BLASTX nr result
ID: Atropa21_contig00020767
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00020767
(706 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 66 7e-20
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 75 5e-18
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 72 1e-16
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 72 2e-15
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 72 2e-15
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 69 5e-15
gb|ABA98327.2| transposon protein, putative, CACTA, En/Spm sub-c... 62 3e-14
ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668... 78 7e-14
gb|EEC75227.1| hypothetical protein OsI_11496 [Oryza sativa Indi... 64 1e-13
gb|ABF95850.1| retrotransposon protein, putative, unclassified [... 64 1e-13
gb|EEE59033.1| hypothetical protein OsJ_10782 [Oryza sativa Japo... 64 1e-13
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ... 70 1e-13
gb|ABF97084.1| retrotransposon protein, putative, unclassified [... 70 1e-13
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 61 1e-13
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 75 2e-13
gb|ABA98536.1| retrotransposon protein, putative, unclassified [... 68 2e-13
ref|XP_004963470.1| PREDICTED: uncharacterized protein LOC101764... 72 3e-13
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 72 3e-13
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 72 3e-13
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 73 4e-13
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 65.9 bits (159), Expect(3) = 7e-20
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +3
Query: 456 AWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCIS 632
+W VI +I +LDF G + K +N T + +IPK+D A YRPIAC + L+K IS
Sbjct: 472 SWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIIS 531
Query: 633 KLLCSRFNNVLPSIVNPTQAAFV 701
K+L R V+ +V+ Q F+
Sbjct: 532 KILTKRLQAVITEVVDCAQTGFI 554
Score = 46.2 bits (108), Expect(3) = 7e-20
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = +1
Query: 37 EEKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYFF 156
EEKDL A+ R+++ +D+S+L Q+S+ W+ D N+K+FF
Sbjct: 328 EEKDLIAQLRKWSTIDESILKQKSRIQWLSLGDSNSKFFF 367
Score = 31.6 bits (70), Expect(3) = 7e-20
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 251 YYQQLLGDSSGPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSSG 424
+Y++LLG SS + D G K+ L++P T Q+I +++ I+ K+ G
Sbjct: 403 FYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPG 460
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 75.1 bits (183), Expect(3) = 5e-18
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +3
Query: 450 RVAWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKC 626
+ +W++IGD + + +LDF G + K +N T + ++PK + +RPIAC +V++K
Sbjct: 150 KCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKI 209
Query: 627 ISKLLCSRFNNVLPSIVNPTQAAFVK 704
ISK+L SR VL S+V+ Q+AFVK
Sbjct: 210 ISKILTSRMQGVLNSVVSENQSAFVK 235
Score = 34.7 bits (78), Expect(3) = 5e-18
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 40 EKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYF 153
EK + +++ +++ + +Q+S+A WI+ D NTK+F
Sbjct: 9 EKICLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFF 46
Score = 27.7 bits (60), Expect(3) = 5e-18
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 251 YYQQLLGDSSGPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSSG 424
+Y +L+G S D +GP + Q L FT ++K +FS++ +K+ G
Sbjct: 83 FYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPG 140
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 71.6 bits (174), Expect(3) = 1e-16
Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 456 AWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCIS 632
+W ++G ++ + + +F + G LLK N T I++IPK+ +P S +RPI+C N L+K I+
Sbjct: 478 SWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIA 537
Query: 633 KLLCSRFNNVLPSIVNPTQAAFV 701
+LL R +L +++ Q+AF+
Sbjct: 538 RLLTDRLQRLLSGVISSAQSAFL 560
Score = 33.9 bits (76), Expect(3) = 1e-16
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 206 LVEA*EGQMSEVFVKYYQQLLGDSSGPR-KPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDI 382
LV++ EG + ++ Y+ LLGD P + + + Q C+L F+ +DI
Sbjct: 394 LVDSQEGIL-DLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDI 452
Query: 383 KKSIFSINVNKSSGPN 430
+ ++FS+ NKS GP+
Sbjct: 453 RAALFSLPRNKSCGPD 468
Score = 26.9 bits (58), Expect(3) = 1e-16
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 82 DKSLLLQRSKATWIR*SDDNTKYF 153
++S Q+S+ +W D NTKYF
Sbjct: 348 EESFFRQKSRISWFAEGDGNTKYF 371
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 71.6 bits (174), Expect(3) = 2e-15
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 450 RVAWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKC 626
R W +IG ++ + +F + G LLK N T +++IPK + S++RPI+C N L+K
Sbjct: 336 RDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKV 395
Query: 627 ISKLLCSRFNNVLPSIVNPTQAAFV 701
ISKLL SR +L +++ +Q+AF+
Sbjct: 396 ISKLLTSRLQGLLSAVIGHSQSAFL 420
Score = 30.8 bits (68), Expect(3) = 2e-15
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 245 VKYYQQLLGDSSGP-RKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSS 421
V YY++LLG P + + + +Q +L K FT +IK + S+ NK+S
Sbjct: 266 VTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTS 325
Query: 422 GPN----EWWRVMQSSLG 463
GP+ E++R S +G
Sbjct: 326 GPDGYSVEFFRDTWSIIG 343
Score = 26.2 bits (56), Expect(3) = 2e-15
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 82 DKSLLLQRSKATWIR*SDDNTKYF 153
++S QRS+ +W D NT YF
Sbjct: 208 EESFFHQRSRVSWFAEGDSNTHYF 231
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 71.6 bits (174), Expect(3) = 2e-15
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 450 RVAWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKC 626
R W +IG ++ + +F + G LLK N T +++IPK + S++RPI+C N L+K
Sbjct: 336 RDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKV 395
Query: 627 ISKLLCSRFNNVLPSIVNPTQAAFV 701
ISKLL SR +L +++ +Q+AF+
Sbjct: 396 ISKLLTSRLQGLLSAVIGHSQSAFL 420
Score = 30.8 bits (68), Expect(3) = 2e-15
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 245 VKYYQQLLGDSSGP-RKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSS 421
V YY++LLG P + + + +Q +L K FT +IK + S+ NK+S
Sbjct: 266 VTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTS 325
Query: 422 GPN----EWWRVMQSSLG 463
GP+ E++R S +G
Sbjct: 326 GPDGYSVEFFRDTWSIIG 343
Score = 26.2 bits (56), Expect(3) = 2e-15
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 82 DKSLLLQRSKATWIR*SDDNTKYF 153
++S QRS+ +W D NT YF
Sbjct: 208 EESFFHQRSRVSWFAEGDSNTHYF 231
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 68.9 bits (167), Expect(3) = 5e-15
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W +IG ++ + +F G LLK N T +++IPK+ + S +RPI+C N ++K ISK
Sbjct: 376 WPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISK 435
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
LL R + LP+ ++ +Q+AF+
Sbjct: 436 LLTDRLKDFLPAAISHSQSAFM 457
Score = 29.3 bits (64), Expect(3) = 5e-15
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 40 EKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYF 153
E + K+R + S QRS+ W+R D N+ YF
Sbjct: 231 EAETQRKWRILAEAEASFFYQRSRVNWLREGDMNSSYF 268
Score = 28.9 bits (63), Expect(3) = 5e-15
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 245 VKYYQQLLGDSSG-PRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSS 421
V+Y+Q LG G P S + Q L PF+ + IK + FS+ NK+S
Sbjct: 303 VEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKAS 362
Query: 422 GPN 430
GP+
Sbjct: 363 GPD 365
>gb|ABA98327.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group]
Length = 2042
Score = 62.0 bits (149), Expect(3) = 3e-14
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDFNIGLL-LKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W VI D+ + +F+ G L + ++N +I +IPKV R QYRPI N FK +K
Sbjct: 1633 WHVIKHDLLTMFNEFHAGELPIFSLNFGVITLIPKVKEANRIQQYRPICLLNASFKIFTK 1692
Query: 636 LLCSRFNNVLPSIVNPTQAAFVK 704
+ +R N+V IV+PTQ AF++
Sbjct: 1693 VATNRINSVADRIVSPTQTAFMR 1715
Score = 37.0 bits (84), Expect(3) = 3e-14
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +2
Query: 248 KYYQQLLGDSSGPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSSGP 427
++Y++L G DA P+V + L+ PF+ ++++++IF + NK+ GP
Sbjct: 1562 EFYKKLFGPPDASTLSFDANRIDDIPQVTEAENDHLIAPFSEEEVREAIFDMETNKAPGP 1621
Query: 428 N--------EWWRVMQSSL 460
+ ++W V++ L
Sbjct: 1622 DGILAEFYQKFWHVIKHDL 1640
Score = 25.4 bits (54), Expect(3) = 3e-14
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 40 EKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYF 153
+KDL A+ R + QR+K +R D+NTKY+
Sbjct: 1493 DKDLVAQLLREEEIK---WYQRAKTDDVRLGDNNTKYY 1527
>ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668020 [Glycine max]
Length = 603
Score = 77.8 bits (190), Expect(2) = 7e-14
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +3
Query: 456 AWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCIS 632
AW++IGDDI V +F G +LK +N +I +IPK D + + +RPI+C N+L+K +S
Sbjct: 292 AWNIIGDDIFEAVNEFFTTGKILKQLNHAIIALIPKHDQASQVNHFRPISCCNLLYKIVS 351
Query: 633 KLLCSRFNNVLPSIVNPTQAAFVK 704
K+L +R VL +I+ TQ AF+K
Sbjct: 352 KILANRIAPVLETIIGETQTAFIK 375
Score = 25.8 bits (55), Expect(2) = 7e-14
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +2
Query: 221 EGQMSEVFVKYYQQLLGDSSGPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFS 400
+ +++ FV +++ L + P+ +GPKV ++ LL P + Q++ I
Sbjct: 214 QDEIALAFVNHFRNLFSAHELTQTPS-ISICNRGPKVPIDCFAALLCPTSKQEVWNVISV 272
Query: 401 INVNKSSGPN 430
++ NK+ GP+
Sbjct: 273 MDNNKAPGPD 282
>gb|EEC75227.1| hypothetical protein OsI_11496 [Oryza sativa Indica Group]
Length = 1059
Score = 64.3 bits (155), Expect(3) = 1e-13
Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDFNI-GLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W V+ ++ V +F + G++L +N T I++IPKV P + ++RPI+ NV++K +SK
Sbjct: 218 WAVLKKEVTTAVRNFFLQGVMLAGVNDTSIVLIPKVSKPEQLKEFRPISLCNVIYKVVSK 277
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
+ +R +L I++ TQ+AF+
Sbjct: 278 CMVNRLRPILKDIISVTQSAFI 299
Score = 31.6 bits (70), Expect(3) = 1e-13
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 37 EEKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYF 153
E + LYA+ ++ + LQRS+ W++ D NTK+F
Sbjct: 75 EIRMLYARMDELLYREEMMWLQRSRVAWLKEGDRNTKFF 113
Score = 26.6 bits (57), Expect(3) = 1e-13
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 227 QMSEVFVKYYQQL-LGDSS-GPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFS 400
+M + +++Q L L D+S PR+ DA + P+V L KPF+ +I ++F
Sbjct: 142 EMEHMAREFFQTLYLKDNSVDPRELIDALT----PRVDDGMNAGLCKPFSDDEIAYALFQ 197
Query: 401 INVNKSSGPN 430
I K+ GP+
Sbjct: 198 IGPLKAPGPD 207
>gb|ABF95850.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 940
Score = 64.3 bits (155), Expect(3) = 1e-13
Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDFNI-GLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W V+ ++ V +F + G++L +N T I++IPKV P + ++RPI+ NV++K +SK
Sbjct: 183 WAVLKKEVTTAVRNFFLQGVMLAGVNDTSIVLIPKVSKPEQLKEFRPISLCNVIYKVVSK 242
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
+ +R +L I++ TQ+AF+
Sbjct: 243 CMVNRLRPILKDIISVTQSAFI 264
Score = 31.2 bits (69), Expect(3) = 1e-13
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 37 EEKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYF 153
E + LYA+ ++ + LQRS+ W++ D NTK+F
Sbjct: 40 EIRMLYARMDELLYREEIMWLQRSRVAWLKEGDRNTKFF 78
Score = 26.9 bits (58), Expect(3) = 1e-13
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 227 QMSEVFVKYYQQL-LGDSS-GPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFS 400
+M + +++Q L L D+S PR+ DA + P+V L KPF+ +I ++F
Sbjct: 107 EMEHMAREFFQTLYLKDNSVDPRELIDALT----PRVDDGMNAGLCKPFSYDEIADALFQ 162
Query: 401 INVNKSSGPN 430
I K+ GP+
Sbjct: 163 IGPLKAPGPD 172
>gb|EEE59033.1| hypothetical protein OsJ_10782 [Oryza sativa Japonica Group]
Length = 850
Score = 64.3 bits (155), Expect(3) = 1e-13
Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDFNI-GLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W V+ ++ V +F + G++L +N T I++IPKV P + ++RPI+ NV++K +SK
Sbjct: 183 WAVLKKEVTTAVRNFFLQGVMLAGVNDTSIVLIPKVSKPEQLKEFRPISLCNVIYKVVSK 242
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
+ +R +L I++ TQ+AF+
Sbjct: 243 CMVNRLRPILKDIISVTQSAFI 264
Score = 31.2 bits (69), Expect(3) = 1e-13
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 37 EEKDLYAKFRRYNNLDKSLLLQRSKATWIR*SDDNTKYF 153
E + LYA+ ++ + LQRS+ W++ D NTK+F
Sbjct: 40 EIRMLYARMDELLYREEIMWLQRSRVAWLKEGDRNTKFF 78
Score = 26.9 bits (58), Expect(3) = 1e-13
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 227 QMSEVFVKYYQQL-LGDSS-GPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFS 400
+M + +++Q L L D+S PR+ DA + P+V L KPF+ +I ++F
Sbjct: 107 EMEHMAREFFQTLYLKDNSVDPRELIDALT----PRVDDGMNAGLCKPFSYDEIADALFQ 162
Query: 401 INVNKSSGPN 430
I K+ GP+
Sbjct: 163 IGPLKAPGPD 172
>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1185
Score = 70.5 bits (171), Expect(2) = 1e-13
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLD-FNIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
WD++ D+ VLD N + N T +++IPKVD P R +Q+RPI+ NV++K ISK
Sbjct: 323 WDMLESDLVKEVLDAINTMKIPDGWNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISK 382
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
+L +R +LP I++ Q+AFV
Sbjct: 383 MLANRLKCLLPEIISDQQSAFV 404
Score = 32.3 bits (72), Expect(2) = 1e-13
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = +2
Query: 221 EGQMSEVFVKYYQQLLGDSSGPRKPTDAKSFAQGP-KVIVEQ*CDLLKPFT*QDIKKSIF 397
E +MS + Y+Q L S D S KV + LL P+T +++K ++F
Sbjct: 245 EDRMSNIVYGYFQNLF---SAEVTQIDGSSLLDVQRKVTGDMNFGLLAPYTAEEVKNALF 301
Query: 398 SINVNKSSGPN--------EWWRVMQSSL 460
SI K+ GP+ +W +++S L
Sbjct: 302 SIGDLKAPGPDGLHAVFYKRFWDMLESDL 330
>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1184
Score = 70.5 bits (171), Expect(2) = 1e-13
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLD-FNIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
WD++ D+ VLD N + N T +++IPKVD P R +Q+RPI+ NV++K ISK
Sbjct: 323 WDMLESDLVKEVLDAINTMKIPDGWNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISK 382
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
+L +R +LP I++ Q+AFV
Sbjct: 383 MLANRLKCLLPEIISDQQSAFV 404
Score = 32.3 bits (72), Expect(2) = 1e-13
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = +2
Query: 221 EGQMSEVFVKYYQQLLGDSSGPRKPTDAKSFAQGP-KVIVEQ*CDLLKPFT*QDIKKSIF 397
E +MS + Y+Q L S D S KV + LL P+T +++K ++F
Sbjct: 245 EDRMSNIVYGYFQNLF---SAEVTQIDGSSLLDVQRKVTGDMNFGLLAPYTAEEVKNALF 301
Query: 398 SINVNKSSGPN--------EWWRVMQSSL 460
SI K+ GP+ +W +++S L
Sbjct: 302 SIGDLKAPGPDGLHAVFYKRFWDMLESDL 330
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 60.8 bits (146), Expect(3) = 1e-13
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Frame = +3
Query: 459 WDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYN----VLFK 623
W VIG ++ + V +F +LLK N T +++IPK+ + + + +RPI+C + L+K
Sbjct: 428 WSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYK 487
Query: 624 CISKLLCSRFNNVLPSIVNPTQAAFV 701
I++LL +R +L +++P Q+AF+
Sbjct: 488 VIARLLTNRLQCLLSQVISPFQSAFL 513
Score = 32.3 bits (72), Expect(3) = 1e-13
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 230 MSEVFVKYYQQLLGDSSGPRKPTDAKSFAQGP-KVIVEQ*CDLLKPFT*QDIKKSIFSIN 406
+ E ++Y+ LLG GP P + +Q +L F+ QDIK + FS
Sbjct: 350 IKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFP 409
Query: 407 VNKSSGPN 430
NK+SGP+
Sbjct: 410 SNKTSGPD 417
Score = 28.9 bits (63), Expect(3) = 1e-13
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 82 DKSLLLQRSKATWIR*SDDNTKYF 153
++S QRS+ TW+ D NT YF
Sbjct: 297 EESFFCQRSRVTWMGEGDSNTSYF 320
>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1365
Score = 75.1 bits (183), Expect(2) = 2e-13
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W ++G+DI V F G +L+ N T I +IPKV+ P +A Q+RPI+ NV++K ISK
Sbjct: 473 WSIVGEDIWRAVSHFFTTGYILQEWNQTNICLIPKVERPEQACQFRPISLCNVIYKIISK 532
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
++ +R +L SIV P Q AFV
Sbjct: 533 IIANRLKPILKSIVTPYQNAFV 554
Score = 27.3 bits (59), Expect(2) = 2e-13
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 323 PKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSSGPN 430
P++ + Q DL+KP T ++++ +F + K+ GP+
Sbjct: 427 PQIDLMQREDLIKPVTREEVRNVVFQMGSLKAPGPD 462
>gb|ABA98536.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 867
Score = 67.8 bits (164), Expect(3) = 2e-13
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +3
Query: 450 RVAWDVIGDDICNVVLDFNIGLL-LKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKC 626
+V WDVI DD+ ++ DF+ G L L ++N II++PK ++ QYRPI NV FK
Sbjct: 733 QVFWDVIKDDMLDLFRDFHNGTLPLFSLNFGTIILLPKCAEAMKIQQYRPICLLNVSFKI 792
Query: 627 ISKLLCSRFNNVLPSIVNPTQAAFV 701
+K+ +R +V +++PTQ AF+
Sbjct: 793 FTKVATNRIMSVAQKVISPTQTAFI 817
Score = 32.3 bits (72), Expect(3) = 2e-13
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 251 YYQQLLGDSSGPRKPTDAKSFAQGPKVIVEQ*CDLLKPFT*QDIKKSIFSINVNKSSGPN 430
YY+ L G D +F P+V + L++ F ++IK++IF + NK+ GP+
Sbjct: 666 YYKDLFGPPDDSDLQFDENNFVDIPQVSQLENEALIQEFIEKEIKEAIFQMEHNKALGPD 725
Score = 21.6 bits (44), Expect(3) = 2e-13
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 100 QRSKATWIR*SDDNTKYF 153
QR+K I D NTKYF
Sbjct: 613 QRAKTKDILEGDSNTKYF 630
>ref|XP_004963470.1| PREDICTED: uncharacterized protein LOC101764448 [Setaria italica]
Length = 1051
Score = 72.0 bits (175), Expect(2) = 3e-13
Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 441 GLCRVAWDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVL 617
G + W+ +G ++ + VL F N G + +++N+T +++IPKV HP Q+RPI+ NV+
Sbjct: 725 GFFQFHWEAVGQNVMDAVLHFLNGGRMPESVNSTTLVLIPKVKHPQEMKQFRPISLCNVI 784
Query: 618 FKCISKLLCSRFNNVLPSIVNPTQAAFV 701
+K SK+L +R L I++ Q+AFV
Sbjct: 785 YKICSKILANRLRGCLDEIISEEQSAFV 812
Score = 29.6 bits (65), Expect(2) = 3e-13
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 353 LLKPFT*QDIKKSIFSINVNKSSGPN 430
L KPFT +++K ++F + NK+ GP+
Sbjct: 695 LTKPFTPEEVKAALFMMGPNKAPGPD 720
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 72.4 bits (176), Expect(2) = 3e-13
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W V+G ++ V +F G LLK N T +++IPK+ + + + +RPI+C N L+K I+K
Sbjct: 480 WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
LL SR +L +++P+Q+AF+
Sbjct: 540 LLTSRLKKLLNEVISPSQSAFL 561
Score = 28.9 bits (63), Expect(2) = 3e-13
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 335 VEQ*CDLLKPFT*QDIKKSIFSINVNKSSGPN 430
V+Q DL + F+ DI+++ FS+ NK+SGP+
Sbjct: 438 VDQINDLERSFSDLDIQEAFFSLPRNKASGPD 469
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 72.4 bits (176), Expect(2) = 3e-13
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +3
Query: 459 WDVIGDDICNVVLDF-NIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCISK 635
W V+G ++ V +F G LLK N T +++IPK+ + + + +RPI+C N L+K I+K
Sbjct: 480 WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539
Query: 636 LLCSRFNNVLPSIVNPTQAAFV 701
LL SR +L +++P+Q+AF+
Sbjct: 540 LLTSRLKKLLNEVISPSQSAFL 561
Score = 28.9 bits (63), Expect(2) = 3e-13
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 335 VEQ*CDLLKPFT*QDIKKSIFSINVNKSSGPN 430
V+Q DL + F+ DI+++ FS+ NK+SGP+
Sbjct: 438 VDQINDLERSFSDLDIQEAFFSLPRNKASGPD 469
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 72.8 bits (177), Expect(2) = 4e-13
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +3
Query: 456 AWDVIGDDICNVVLD--FNIGLLLKTMNTTMIIIIPKVDHPVRASQYRPIACYNVLFKCI 629
AW VIGD++ + F+ G LL +N+T+I ++PKV +P S +RPI+C N +K I
Sbjct: 304 AWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKII 363
Query: 630 SKLLCSRFNNVLPSIVNPTQAAFV 701
+KLL +R L IV P+Q+ F+
Sbjct: 364 AKLLANRLKGTLHLIVGPSQSTFI 387
Score = 28.1 bits (61), Expect(2) = 4e-13
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 353 LLKPFT*QDIKKSIFSINVNKSSGPN 430
L FT DI+ FS+N NKS GP+
Sbjct: 269 LCNEFTHDDIRAVFFSMNPNKSPGPD 294