BLASTX nr result
ID: Atropa21_contig00020394
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00020394 (1878 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 155 9e-97 gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 151 4e-96 gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 154 1e-95 gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 155 1e-95 gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 148 6e-95 gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 160 8e-95 gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 147 9e-94 gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 147 1e-93 emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 146 9e-93 gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 156 3e-88 gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 156 3e-88 gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 142 5e-85 gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 132 1e-84 gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 137 3e-78 gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 141 9e-76 gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 141 1e-75 gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 141 1e-75 emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera] 127 2e-75 emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera] 128 4e-75 gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 140 9e-75 >gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 2340 Score = 155 bits (393), Expect(5) = 9e-97 Identities = 108/313 (34%), Positives = 162/313 (51%), Gaps = 26/313 (8%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760 +GY GVKGYKLWC K + SR++ F ES +L+ + V VE + VE S Sbjct: 892 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISS 951 Query: 761 GELTKEKDQETNVEDESKDVDLEELTINEP-YTIAKGKEERQTRKPECLIDQANCICVXX 937 G +++D N ++ + + P +IAK + +R + P+ I++AN + Sbjct: 952 GHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIV---- 1007 Query: 938 XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099 A+ + + ++G + V+ D +++ +M EK + Sbjct: 1008 ---------AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK----NHT 1054 Query: 1100 WMQMGLQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKH 1240 W + L KE+ G S +A L+AK +S+ GID+N++F PV KH Sbjct: 1055 WELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKH 1114 Query: 1241 SSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLY 1420 SSI D EL+Q+DVK AFL+G+LEE IYM+QP+GF+ GKE+ V +LKKSLY Sbjct: 1115 SSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLY 1174 Query: 1421 GLKQSPK*WYKRF 1459 GLKQSP+ WYKRF Sbjct: 1175 GLKQSPRQWYKRF 1187 Score = 108 bits (269), Expect(5) = 9e-97 Identities = 54/100 (54%), Positives = 69/100 (69%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG+EFCS+ Sbjct: 719 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 778 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 +C+ GI RH T +T QQN VAERMN+T+I K R LL Sbjct: 779 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLL 818 Score = 83.2 bits (204), Expect(5) = 9e-97 Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 3/89 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNVVNL--SR 1626 IYL YVD MLI A + ++I LK L+ EF++KDL A KKIL MEI R+ + L S+ Sbjct: 1215 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQ 1274 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713 K YIE+VL RFNM+ KP STPLA HF+L Sbjct: 1275 KGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1303 Score = 57.8 bits (138), Expect(5) = 9e-97 Identities = 28/55 (50%), Positives = 37/55 (67%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 V TA +++N P++AID KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 832 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 886 Score = 41.6 bits (96), Expect(5) = 9e-97 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T +L Y+HSDLWGP++ +S G Y+ Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYM 721 >gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group] gi|53370655|gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica Group] gi|108710286|gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1322 Score = 151 bits (382), Expect(5) = 4e-96 Identities = 110/308 (35%), Positives = 156/308 (50%), Gaps = 19/308 (6%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVE-LSGEL 769 L +GY GVKGYKLW K SR++ F+E + N G +E + +S ++ Sbjct: 676 LFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQYVSVQV 735 Query: 770 TKEKDQETN-VEDESKDVDLEELTINEPY--TIAKGKEERQTRKPECLIDQANCICVXXX 940 DQET V ++ D ++ +P IA + +R P LI++ + + Sbjct: 736 EHVDDQETEIVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMV----- 790 Query: 941 XXXXXXXXAFLVY*SNFLQGC--NTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMG 1114 ++ N L+ V+ D +S+ + +M EK G+W + Sbjct: 791 ----YYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEK----NGTWELVH 842 Query: 1115 LQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHX 1255 L K++ G S + LVAK FS+ G+DYN++F PV KHSSI Sbjct: 843 LPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRT 902 Query: 1256 XXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQS 1435 DLEL+QLDVK FL+G+LEE IYMDQPEGF+ GKED+V +LK+SLYGLKQS Sbjct: 903 FFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962 Query: 1436 PK*WYKRF 1459 P+ WYKRF Sbjct: 963 PRQWYKRF 970 Score = 105 bits (261), Expect(5) = 4e-96 Identities = 59/119 (49%), Positives = 75/119 (63%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D+SRK LK K D F AFKE K +IERQ E+ +K L TDNG EFCS+ Sbjct: 505 RYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAF 564 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 +D+C GI RH T T QQN VAERMN+T+I K R ML A+M+ F +++ Y Sbjct: 565 DDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACY 623 Score = 94.4 bits (233), Expect(5) = 4e-96 Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 3/93 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSR 1626 IYL YVD MLI A + +I LKK L+ EFD+KDL A KKIL MEI R+ N ++ LS+ Sbjct: 998 IYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQ 1057 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 + YI++VL+RFNM+ KP STP+APHFKL LQ Sbjct: 1058 QSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQ 1090 Score = 50.8 bits (120), Expect(5) = 4e-96 Identities = 23/54 (42%), Positives = 35/54 (64%) Frame = +1 Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 +TA +++N P+ ++ KTP E+W G P+ +S L VFG Y HV+ G LE +A Sbjct: 619 NTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRA 672 Score = 42.7 bits (99), Expect(5) = 4e-96 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H+T+ +L Y+H+DLWGPS+ S G Y+ Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507 >gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1278 Score = 154 bits (389), Expect(5) = 1e-95 Identities = 113/308 (36%), Positives = 155/308 (50%), Gaps = 19/308 (6%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVE-LSGEL 769 L +GY GVKGYKLW K SR + F+ES + N G +E + +S ++ Sbjct: 676 LFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYVSVQV 735 Query: 770 TKEKDQETN-VEDESKDVDLEELTINEPYT--IAKGKEERQTRKPECLIDQANCICVXXX 940 DQET V ++ D + +P IA + +R P LI++ + + Sbjct: 736 EHVDDQETEIVGNDVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFS 795 Query: 941 XXXXXXXXAFLVY*SNFLQGCN--TMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMG 1114 N L+ V+ D +S+ + +M EK G+W + Sbjct: 796 CAEQV---------ENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKN----GTWELVH 842 Query: 1115 LQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHX 1255 L K++ G S +A LVAK FS+ G+DYN++F PV KHSSI Sbjct: 843 LPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRT 902 Query: 1256 XXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQS 1435 DLEL+QLDVK AFL+G+LEE IYMDQPEGF+ GKED+V +LK+SLYGLKQS Sbjct: 903 FFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962 Query: 1436 PK*WYKRF 1459 P+ WYKRF Sbjct: 963 PRQWYKRF 970 Score = 108 bits (269), Expect(5) = 1e-95 Identities = 60/119 (50%), Positives = 76/119 (63%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D+SRKV LK K D F AFKE K +IERQ E+ +K LRTDN EFCS+ Sbjct: 505 RYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAF 564 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 +D+C GI RH T T QQN VAERMN+T+I K R ML A+M+ F +++ Y Sbjct: 565 DDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACY 623 Score = 89.7 bits (221), Expect(5) = 1e-95 Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 3/93 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSR 1626 IYL YVD +LI A + +I LKK L+ EFD+KDL A KKIL MEI R+ N ++ LS+ Sbjct: 998 IYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQ 1057 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 + YI++VL+ FNM+ KP STP+APHFKL LQ Sbjct: 1058 QSYIKKVLQCFNMHDAKPVSTPIAPHFKLSALQ 1090 Score = 47.8 bits (112), Expect(5) = 1e-95 Identities = 22/54 (40%), Positives = 34/54 (62%) Frame = +1 Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 +TA +++N P+ ++ KTP E+W G P+ +S L VFG Y HV+ LE +A Sbjct: 619 NTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRA 672 Score = 42.7 bits (99), Expect(5) = 1e-95 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H+T+ +L Y+H+DLWGPS+ S G Y+ Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507 >gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1243 Score = 155 bits (392), Expect(5) = 1e-95 Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 26/313 (8%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760 +GY GVKGYKLWC K + SR++ F ES IL+ + V VE + VE S Sbjct: 657 LGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 716 Query: 761 GELTKEKDQETNVE-DESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937 G +++D N + +D D + + +IAK K +R + P I++A + Sbjct: 717 GHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIV---- 772 Query: 938 XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099 A+ + + ++G + V+ D +++ +M EK + Sbjct: 773 ---------AYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK----NHT 819 Query: 1100 WMQMGLQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKH 1240 W + L KE+ G S +A LVAK +S+ GID+N++F PV KH Sbjct: 820 WELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKH 879 Query: 1241 SSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLY 1420 SSI D EL+Q++VK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLY Sbjct: 880 SSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLY 939 Query: 1421 GLKQSPK*WYKRF 1459 GLKQSP+ WYKRF Sbjct: 940 GLKQSPRQWYKRF 952 Score = 103 bits (258), Expect(5) = 1e-95 Identities = 52/100 (52%), Positives = 68/100 (68%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG+EFCS+ Sbjct: 484 RYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 543 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 +C+ GI H T +T QQN VAERMN+T+I K R +L Sbjct: 544 KSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCML 583 Score = 85.5 bits (210), Expect(5) = 1e-95 Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 3/89 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNV--VNLSR 1626 IYL YVD MLI A + ++I LK L+ EF++KDL A KKIL MEI RE + + LS+ Sbjct: 980 IYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 1039 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713 K YIE+VL RFNM+ KP STPLA HF+L Sbjct: 1040 KGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1068 Score = 57.4 bits (137), Expect(5) = 1e-95 Identities = 28/55 (50%), Positives = 36/55 (65%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 V TA +++N P +AID KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 597 VSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRA 651 Score = 40.4 bits (93), Expect(5) = 1e-95 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T +L Y+HSDLWGP+ +S G Y+ Sbjct: 453 FNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYM 486 >gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1333 Score = 148 bits (373), Expect(5) = 6e-95 Identities = 112/331 (33%), Positives = 157/331 (47%), Gaps = 42/331 (12%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSI----LNFRKVFVEFLGNKNENVELS 760 L +GY GVKGYKLW K SR + F+ES + L V + L + VE Sbjct: 675 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHV 734 Query: 761 GELT--------KEKDQETNVEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPECL 904 + T ++ D +V D+ D+++ L + E IA+ K +R T+ P+ L Sbjct: 735 DDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRL 794 Query: 905 IDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGVS 1045 I++ N S + C N D + +S Sbjct: 795 IEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWIS 834 Query: 1046 SQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKVF 1186 + +M EK +W + L K++ G S +A LVA+ + Sbjct: 835 AMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGY 890 Query: 1187 SRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEG 1366 S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPEG Sbjct: 891 SQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEG 950 Query: 1367 FLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 F+ GKE +V +LK+SLYGLKQSP+ W KRF Sbjct: 951 FIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981 Score = 110 bits (274), Expect(5) = 6e-95 Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D+SRKV LK K D F AFK K +IERQ ER +K LRTDNG EFCS Sbjct: 504 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622 Score = 89.4 bits (220), Expect(5) = 6e-95 Identities = 52/93 (55%), Positives = 66/93 (70%), Gaps = 3/93 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKILVMEI R+ + ++ LS+ Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQ 1068 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 YI++VL+RFNM K STP+APHFKL Q Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101 Score = 51.2 bits (121), Expect(5) = 6e-95 Identities = 24/53 (45%), Positives = 34/53 (64%) Frame = +1 Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671 Score = 41.6 bits (96), Expect(5) = 6e-95 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T+ L Y+H+DLWGPSK S G Y+ Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506 >gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1241 Score = 160 bits (405), Expect(5) = 8e-95 Identities = 111/301 (36%), Positives = 160/301 (53%), Gaps = 14/301 (4%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760 +GY+ GVKGYKLWC K + SR++ F ES +L+ + V VE + VE S Sbjct: 594 LGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEHLISS 653 Query: 761 GELTKEKDQETNVE-DESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937 G +++D N + +D D + + +IAK + +R T+ P I++AN + Sbjct: 654 GHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYAL 713 Query: 938 XXXXXXXXXAFLVY*SNFL--QGCNT-MAVNHDGRDGVSSQES----DMGLSEKTIGEEG 1096 A S+ + CN + HD + + S + +K I Sbjct: 714 SVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPI--RC 771 Query: 1097 SWMQMGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXX 1276 W+ +++ G S +A LVAK +S+ GID+N++F PV KHSSI Sbjct: 772 KWI---FKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAM 828 Query: 1277 FDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKR 1456 D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP+ WYKR Sbjct: 829 HDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 888 Query: 1457 F 1459 F Sbjct: 889 F 889 Score = 105 bits (261), Expect(5) = 8e-95 Identities = 52/100 (52%), Positives = 68/100 (68%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG+E CS+ Sbjct: 421 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIF 480 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 +C+ GI RH T +T QQN VAERMN+T+I K R +L Sbjct: 481 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCML 520 Score = 76.6 bits (187), Expect(5) = 8e-95 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 3/89 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + ++I LK L+ EF++KDL A KKIL MEI RE + + LS+ Sbjct: 917 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 976 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713 K YIE+VL RFNM+ K ST LA HF+L Sbjct: 977 KCYIEKVLHRFNMHDAKLVSTLLAAHFRL 1005 Score = 56.2 bits (134), Expect(5) = 8e-95 Identities = 27/54 (50%), Positives = 36/54 (66%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESK 591 V TA +++N P++AID KTP EVW G P+ +S L VFG Y HV+ G LE + Sbjct: 534 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPR 587 Score = 41.6 bits (96), Expect(5) = 8e-95 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T +L Y+HSDLWGP++ +S G Y+ Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 423 >gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] gi|77549942|gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1373 Score = 147 bits (370), Expect(5) = 9e-94 Identities = 109/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736 L +GY GVKGYKLW K SR + F+ES + +++ ++ + + Sbjct: 675 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 733 Query: 737 KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901 +++ + E E+D N V D+ D+++ L + E IA+ K +R T+ P+ Sbjct: 734 VDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKR 793 Query: 902 LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042 LI++ N S + C N D + + Sbjct: 794 LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 833 Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKV 1183 S+ +M EK +W + L K++ G S +A LVA+ Sbjct: 834 SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889 Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363 +S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPE Sbjct: 890 YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949 Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 GF+ GKE +V +LK+SLYGLKQSP+ W KRF Sbjct: 950 GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981 Score = 110 bits (274), Expect(5) = 9e-94 Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D+SRKV LK K D F AFK K +IERQ ER +K LRTDNG EFCS Sbjct: 504 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622 Score = 86.7 bits (213), Expect(5) = 9e-94 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKIL MEI R+ + ++ LS+ Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 YI++VL+RFNM K STP+APHFKL Q Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101 Score = 51.2 bits (121), Expect(5) = 9e-94 Identities = 24/53 (45%), Positives = 34/53 (64%) Frame = +1 Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671 Score = 41.6 bits (96), Expect(5) = 9e-94 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T+ L Y+H+DLWGPSK S G Y+ Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506 >gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1333 Score = 147 bits (370), Expect(5) = 1e-93 Identities = 109/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736 L +GY GVKGYKLW K SR + F+ES + +++ ++ + + Sbjct: 675 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 733 Query: 737 KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901 +++ + E E+D N V D+ D+++ L + E IA+ K +R T+ P+ Sbjct: 734 VDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKR 793 Query: 902 LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042 LI++ N S + C N D + + Sbjct: 794 LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 833 Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKV 1183 S+ +M EK +W + L K++ G S +A LVA+ Sbjct: 834 SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889 Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363 +S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPE Sbjct: 890 YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949 Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 GF+ GKE +V +LK+SLYGLKQSP+ W KRF Sbjct: 950 GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981 Score = 109 bits (273), Expect(5) = 1e-93 Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D+SRKV LK K D F AFK K +IERQ ER +K LRTDNG EFCS Sbjct: 504 RYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622 Score = 86.7 bits (213), Expect(5) = 1e-93 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKIL MEI R+ + ++ LS+ Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 YI++VL+RFNM K STP+APHFKL Q Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101 Score = 50.8 bits (120), Expect(5) = 1e-93 Identities = 24/53 (45%), Positives = 34/53 (64%) Frame = +1 Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRA 671 Score = 41.6 bits (96), Expect(5) = 1e-93 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T+ L Y+H+DLWGPSK S G Y+ Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506 >emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] Length = 1335 Score = 146 bits (369), Expect(5) = 9e-93 Identities = 108/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736 L +GY GVKGYKLW K SR + F+ES + +++ ++ + + Sbjct: 677 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 735 Query: 737 KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901 +++ + E E+D N V D+ D+++ L + E +IA+ K +R T+ P+ Sbjct: 736 VDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKR 795 Query: 902 LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042 LI++ N S + C N D + + Sbjct: 796 LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 835 Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKERGNF*-------------SGRC*VRA*LVAKV 1183 S+ +M EK +W + L K++ S +A LVA+ Sbjct: 836 SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARG 891 Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363 +S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPE Sbjct: 892 YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 951 Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 GF+ GKE +V +LK+SLYGLKQSP+ W KRF Sbjct: 952 GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 983 Score = 107 bits (266), Expect(5) = 9e-93 Identities = 60/119 (50%), Positives = 74/119 (62%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D+SRKV LK K D F AFK K +IERQ ER +K L TDNG EFCS Sbjct: 506 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAF 565 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y Sbjct: 566 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 624 Score = 86.7 bits (213), Expect(5) = 9e-93 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKIL MEI R+ + ++ LS+ Sbjct: 1011 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1070 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 YI++VL+RFNM K STP+APHFKL Q Sbjct: 1071 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1103 Score = 51.2 bits (121), Expect(5) = 9e-93 Identities = 24/53 (45%), Positives = 34/53 (64%) Frame = +1 Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 621 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 673 Score = 41.6 bits (96), Expect(5) = 9e-93 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T+ L Y+H+DLWGPSK S G Y+ Sbjct: 475 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 508 >gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1312 Score = 156 bits (394), Expect(5) = 3e-88 Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 20/307 (6%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE--LSG 763 +GY GVKGYKLWC K + SR++ F ES IL+ + V VE + VE +S Sbjct: 720 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 779 Query: 764 ELTKEKDQETNVEDES--KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937 EK+ +D +D D + + +IAK K +R + P I++AN + Sbjct: 780 GHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839 Query: 938 XXXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117 A S + V+ D +++ +M +++ + +W + L Sbjct: 840 SVAEEIEGNAEPSTYSEAI-------VSDDCNRWITAMHDEM----ESLKKNHTWEFVKL 888 Query: 1118 QKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXX 1258 KE+ G S +A LVAK +S+ GID+N++F P+ KHSSI Sbjct: 889 PKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948 Query: 1259 XXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSP 1438 D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP Sbjct: 949 LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008 Query: 1439 K*WYKRF 1459 + WYKRF Sbjct: 1009 RQWYKRF 1015 Score = 101 bits (251), Expect(5) = 3e-88 Identities = 50/100 (50%), Positives = 66/100 (66%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T ++D+SRKV LK K AF+ FKE K ++ERQ E+ +K LRTDNG+EFCS+ Sbjct: 547 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 +C+ GI H T +T QQN VAERMN +I K R +L Sbjct: 607 KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646 Score = 66.6 bits (161), Expect(5) = 3e-88 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + ++I LK L+ EF +KDL A KKIL MEI RE + + LS+ Sbjct: 1043 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQ 1102 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAP 1701 K YI++VL RFNM+ KP L P Sbjct: 1103 KGYIKKVLRRFNMHDVKPIIFRLCP 1127 Score = 54.3 bits (129), Expect(5) = 3e-88 Identities = 26/55 (47%), Positives = 35/55 (63%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 V T +++N P++A D KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 714 Score = 39.7 bits (91), Expect(5) = 3e-88 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T +L Y+HSDLWGP+ +S G Y+ Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549 >gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1280 Score = 156 bits (394), Expect(5) = 3e-88 Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 20/307 (6%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE--LSG 763 +GY GVKGYKLWC K + SR++ F ES IL+ + V VE + VE +S Sbjct: 720 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 779 Query: 764 ELTKEKDQETNVEDES--KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937 EK+ +D +D D + + +IAK K +R + P I++AN + Sbjct: 780 GHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839 Query: 938 XXXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117 A S + V+ D +++ +M +++ + +W + L Sbjct: 840 SVAEEIEGNAEPSTYSEAI-------VSDDCNRWITAMHDEM----ESLKKNHTWEFVKL 888 Query: 1118 QKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXX 1258 KE+ G S +A LVAK +S+ GID+N++F P+ KHSSI Sbjct: 889 PKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948 Query: 1259 XXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSP 1438 D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP Sbjct: 949 LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008 Query: 1439 K*WYKRF 1459 + WYKRF Sbjct: 1009 RQWYKRF 1015 Score = 101 bits (251), Expect(5) = 3e-88 Identities = 50/100 (50%), Positives = 66/100 (66%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T ++D+SRKV LK K AF+ FKE K ++ERQ E+ +K LRTDNG+EFCS+ Sbjct: 547 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 +C+ GI H T +T QQN VAERMN +I K R +L Sbjct: 607 KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646 Score = 66.2 bits (160), Expect(5) = 3e-88 Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626 IYL YVD MLI A + ++I LK L+ EF +KDL A KKIL MEI RE + + LS+ Sbjct: 1043 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQ 1102 Query: 1627 KRYIERVLERFNMYTCKP 1680 K YI++VL RFNM+ KP Sbjct: 1103 KGYIKKVLRRFNMHDVKP 1120 Score = 54.3 bits (129), Expect(5) = 3e-88 Identities = 26/55 (47%), Positives = 35/55 (63%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 V T +++N P++A D KTP EVW G P+ +S L VFG Y HV+ G LE +A Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 714 Score = 39.7 bits (91), Expect(5) = 3e-88 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T +L Y+HSDLWGP+ +S G Y+ Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549 >gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1| copia LTR rider [Solanum lycopersicum] Length = 1307 Score = 142 bits (358), Expect(5) = 5e-85 Identities = 96/294 (32%), Positives = 153/294 (52%), Gaps = 7/294 (2%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN--FRKVFVEFLGNKNENVE---LSG 763 +GY DGVKG+++W + + I SR++ FDES +L + G+ ++ VE + Sbjct: 663 VGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQN 722 Query: 764 ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXXX 943 E ++ +E + E +++ E + + +IA+ + R +P + + Sbjct: 723 ESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQV 782 Query: 944 XXXXXXXAFLVY*SNFLQGCNT--MAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117 Y L + A D + + ++ L + G + + Sbjct: 783 AEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQT-WDLVIQPSGRKIITCKWVF 841 Query: 1118 QKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQ 1297 +K+ G + +A +VA+ F+++EG+DYNEIF PV +H+SI +LEL+Q Sbjct: 842 KKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQ 901 Query: 1298 LDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 LDVK AFL+G+LEE IYM QP+GF GKE+HV +LKKSLYGLKQSP+ WYKRF Sbjct: 902 LDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRF 955 Score = 108 bits (269), Expect(5) = 5e-85 Identities = 54/100 (54%), Positives = 70/100 (70%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + I+D+SR V ++K K +AF+ FKE K L+E Q + IK LRTDNGLEFC E Sbjct: 490 RFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEF 549 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 + FC+ GI+RH T RNT QQN VAERMN+TL+E+ R +L Sbjct: 550 DQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCML 589 Score = 67.4 bits (163), Expect(5) = 5e-85 Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Frame = +1 Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEIL--RENNVVNLSR 1626 IYL YVD MLI A I LK LL+ EF++KDL A +KIL MEI+ RE + LS+ Sbjct: 984 IYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQ 1043 Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713 + YI++VL RF M + KP TP A + L Sbjct: 1044 RSYIQKVLARFGMSSSKPIDTPSAANIHL 1072 Score = 54.3 bits (129), Expect(5) = 5e-85 Identities = 27/59 (45%), Positives = 36/59 (61%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKAKNRV 606 V TA +++N P I KTP E+W G+ + +S L FG YYHV+EG LE +AK V Sbjct: 603 VSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGV 661 Score = 34.7 bits (78), Expect(5) = 5e-85 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDG 94 F H+T+ L YIHSD WGP ++ S G Sbjct: 459 FPKAIHRTKGTLDYIHSDCWGPCRVESLGG 488 >gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group] gi|18542925|gb|AAL75759.1| Putative pol polyprotein [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1005 Score = 132 bits (332), Expect(5) = 1e-84 Identities = 107/302 (35%), Positives = 139/302 (46%), Gaps = 13/302 (4%) Frame = +2 Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELT 772 L +GY GVKGYKLW K SR + F NE+V + L Sbjct: 413 LFLGYGSGVKGYKLWNPETNKTFMSRSVIF-------------------NESVMFNDSLP 453 Query: 773 KEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXXXXXX 952 T+ +DE IA + +R P LI++ + + Sbjct: 454 ------TDPQDEP---------------IAHRRTKRSCGAPVRLIEECDMV--------- 483 Query: 953 XXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGLQKER- 1129 AF S Q NT+ V+ QE L + G+W + L K++ Sbjct: 484 --YYAF----SCAEQVKNTLEPATYTEAVVAMQEEMQSLEKN-----GTWELVHLPKQKK 532 Query: 1130 ------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXX 1273 G S +A LVAK FS+ G+DYN++F PV KHSSI Sbjct: 533 PVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVA 592 Query: 1274 XFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYK 1453 DLEL+QLDVK AFL+G+LEE IYMDQPEGF+ GKE +V +LK+S YGLKQSP+ WYK Sbjct: 593 MHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLKQSPRQWYK 652 Query: 1454 RF 1459 RF Sbjct: 653 RF 654 Score = 102 bits (254), Expect(5) = 1e-84 Identities = 59/119 (49%), Positives = 74/119 (62%), Gaps = 1/119 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T I+D SRKV LK K D F AFKE K +IERQ E+ +K LRTDNG EFCS+ Sbjct: 242 RYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNGGEFCSDAF 301 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449 +D+ GI RH T T QQN VAERMN+T+I K ML A+M+ F +++ Y Sbjct: 302 DDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACY 360 Score = 85.9 bits (211), Expect(5) = 1e-84 Identities = 50/92 (54%), Positives = 63/92 (68%), Gaps = 2/92 (2%) Frame = +1 Query: 1456 IYLR*YVDMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSRK 1629 IYL DMLI A + +I LKK L+ EFD+KDL A KKIL MEI R+ N ++ LS++ Sbjct: 682 IYLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQ 741 Query: 1630 RYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725 YI+ VL+RFNM+ K S P+APHFKL LQ Sbjct: 742 SYIKNVLQRFNMHDAKLVSIPIAPHFKLSVLQ 773 Score = 48.1 bits (113), Expect(5) = 1e-84 Identities = 23/54 (42%), Positives = 34/54 (62%) Frame = +1 Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 +TA +++N P+ ++ KTP EVW G + +S L VFG Y HV+ G LE +A Sbjct: 356 NTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAHVDNGKLEPRA 409 Score = 37.0 bits (84), Expect(5) = 1e-84 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+ H+ + +L Y+H+DLWGPS S G Y+ Sbjct: 211 FNISVHRIKGILDYVHADLWGPSHKPSLGGARYM 244 >gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group] gi|20087076|gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group] Length = 1225 Score = 137 bits (344), Expect(5) = 3e-78 Identities = 104/301 (34%), Positives = 155/301 (51%), Gaps = 14/301 (4%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760 +GY GVKGYKLWC K + SR++ F ES +L+ + V VE + VE S Sbjct: 646 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISS 705 Query: 761 GELTKEKDQETNVEDES-KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937 G ++++ N++ +D D + + ++IAK K +R + P I++AN + Sbjct: 706 GHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIV---- 761 Query: 938 XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099 A+ + + ++G + V+ D +++ +M EK + Sbjct: 762 ---------AYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKN----HT 808 Query: 1100 WMQMGLQKERGNF*SGRC*VRA*LVAKVFSRKEGID-YNEIFYPVAKHSSIHXXXXXXXX 1276 W + L KE+ RC +F RKEG+ +E Y K SSI Sbjct: 809 WELVKLPKEKKPI---RC-------KWIFKRKEGMSPSDEARY---KASSIRTLLSIVAM 855 Query: 1277 FDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKR 1456 +D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP+ WYKR Sbjct: 856 YDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 915 Query: 1457 F 1459 F Sbjct: 916 F 916 Score = 106 bits (264), Expect(5) = 3e-78 Identities = 52/100 (52%), Positives = 69/100 (69%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG++FCS+ Sbjct: 473 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIF 532 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 +C+ GI RH T +T QQN VAERMN+T+I K R +L Sbjct: 533 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCML 572 Score = 53.1 bits (126), Expect(5) = 3e-78 Identities = 26/55 (47%), Positives = 36/55 (65%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594 V TA +++N P++AID KTP +VW G P+ +S L VFG Y HV+ LE +A Sbjct: 586 VSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRA 640 Score = 46.2 bits (108), Expect(5) = 3e-78 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Frame = +1 Query: 1456 IYLR*YV-DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE 1602 IYL YV DMLI A + +I LK L+ EF++KDL A KKIL MEI RE Sbjct: 944 IYLLLYVNDMLIAAKDKLEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 993 Score = 41.6 bits (96), Expect(5) = 3e-78 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +2 Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106 F+T H T +L Y+HSDLWGP++ +S G Y+ Sbjct: 442 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 475 >gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 141 bits (356), Expect(5) = 9e-76 Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778 +GY D VKGY+LW + K + SRD+ F E+ + + +K N + + E + +E Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQK-------NDSTSKETAIVQMEE 729 Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940 K +E++ E++ V E+ EP + G + RQT+KP D + C+ Sbjct: 730 KSKESD-SSEAESVHEEQ----EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784 Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108 L N M H+ + + ++ ++ K IG + W+ Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838 Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288 K GN R RA LV K +++KEGID+NEIF PV + ++I DL Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894 Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951 Score = 90.1 bits (222), Expect(5) = 9e-76 Identities = 49/100 (49%), Positives = 64/100 (64%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R +FI+D+SR++ V +K K D F FK K IE + E+ IK LRTDNG E+ E Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEF 560 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 FC+ GI R T +T QQN VAERMN+TL+E+TR +L Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600 Score = 72.8 bits (177), Expect(5) = 9e-76 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%) Frame = +1 Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650 DML+V N ++ LK L +EFD+KDL KIL M+I R+ + + LS+K Y+ +VL Sbjct: 988 DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047 Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713 RFNM CKP STPL +FKL Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068 Score = 47.8 bits (112), Expect(5) = 9e-76 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +1 Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRVC 609 TA +++N P+ AID KTP E+W G+P +S L VFG P Y N + + K+R C Sbjct: 616 TACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKC 674 Score = 23.5 bits (49), Expect(5) = 9e-76 Identities = 8/30 (26%), Positives = 18/30 (60%) Frame = +2 Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112 +++ +L IHSD+W ++S + ++ F Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSF 506 >gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 141 bits (356), Expect(5) = 1e-75 Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778 +GY D VKGY+LW + K + SRD+ F E+ + + +K N + + E + +E Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQK-------NDSTSKETAIVQMEE 729 Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940 K +E++ E++ V E+ EP + G + RQT+KP D + C+ Sbjct: 730 KSKESD-SSEAESVHEEQ----EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784 Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108 L N M H+ + + ++ ++ K IG + W+ Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838 Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288 K GN R RA LV K +++KEGID+NEIF PV + ++I DL Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894 Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951 Score = 88.2 bits (217), Expect(5) = 1e-75 Identities = 48/100 (48%), Positives = 63/100 (63%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R +FI+D+SR++ V +K K D F FK K IE + + IK LRTDNG E+ E Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEF 560 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 FC+ GI R T +T QQN VAERMN+TL+E+TR +L Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600 Score = 72.8 bits (177), Expect(5) = 1e-75 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Frame = +1 Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNVVN--LSRKRYIERVL 1650 DML+V N ++ LK L +EFD+KDL KIL M+I R+ + LS+K Y+ +VL Sbjct: 988 DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVL 1047 Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713 RFNM CKP STPL +FKL Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068 Score = 48.9 bits (115), Expect(5) = 1e-75 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606 V TA +++N P+ AID KTP E+W G+P +S L VFG P Y N + + K+R Sbjct: 614 VKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673 Query: 607 C 609 C Sbjct: 674 C 674 Score = 23.5 bits (49), Expect(5) = 1e-75 Identities = 8/30 (26%), Positives = 18/30 (60%) Frame = +2 Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112 +++ +L IHSD+W ++S + ++ F Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSF 506 >gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 141 bits (356), Expect(5) = 1e-75 Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778 +GY D VKGY+LW + K + SRD+ F E+ + + +K N + + E + +E Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQK-------NDSTSKETAIVQMEE 729 Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940 K +E++ E++ V E+ EP + G + RQT+KP D + C+ Sbjct: 730 KSKESD-SSEAEPVHEEQ----EPDDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784 Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108 L N M H+ + + ++ ++ K IG + W+ Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838 Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288 K GN R RA LV K +++KEGID+NEIF PV + ++I DL Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894 Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951 Score = 87.4 bits (215), Expect(5) = 1e-75 Identities = 48/100 (48%), Positives = 63/100 (63%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R +FI+D+SR++ V +K K D F FK K IE + + IK LRTDNG E+ E Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395 FC+ GI R T +T QQN VAERMN+TL+E+TR +L Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600 Score = 72.8 bits (177), Expect(5) = 1e-75 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%) Frame = +1 Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650 DML+V N ++ LK L +EFD+KDL KIL M+I R+ + + LS+K Y+ +VL Sbjct: 988 DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047 Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713 RFNM CKP STPL +FKL Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068 Score = 48.9 bits (115), Expect(5) = 1e-75 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606 V TA +++N P+ AID KTP E+W G+P +S L VFG P Y N + + K+R Sbjct: 614 VKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673 Query: 607 C 609 C Sbjct: 674 C 674 Score = 24.3 bits (51), Expect(5) = 1e-75 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +2 Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112 +++ +L IHSD+W +LS + ++ F Sbjct: 477 RSKHILDLIHSDVWESPELSLGGARYFVSF 506 >emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera] Length = 1261 Score = 127 bits (320), Expect(5) = 2e-75 Identities = 101/295 (34%), Positives = 143/295 (48%), Gaps = 8/295 (2%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFV----EFLGNKNENVELSG- 763 IGY D GY+ W K I SR++ F+E + R E K+E V L Sbjct: 631 IGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDEL 690 Query: 764 -ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXX 940 E T +K E + E+ + VDL + + R TR P+ N + + Sbjct: 691 TESTVQKGGEEDKENVNSQVDLSTPIVEVR------RSSRNTRPPQRYSPVLNYLLLTDG 744 Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMG--LSEKTIGEEGSWMQMG 1114 A LQ N+ +D + S + L+E +G++ + Sbjct: 745 GEPECYDEA--------LQDENSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWV 796 Query: 1115 LQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQ 1294 + + + S R +A LV K F +KEGIDY EIF PV K S+I +L L+ Sbjct: 797 YRIKNEHDGSKR--YKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLE 854 Query: 1295 QLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 QLDVK AFL+GDLEE +YM QPEGF+ G+E+ V +L+KSLYGLKQ+P+ WYK+F Sbjct: 855 QLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKF 909 Score = 83.2 bits (204), Expect(5) = 2e-75 Identities = 45/99 (45%), Positives = 58/99 (58%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R TFIND SRKV V LK K D F FK+ K ++E + +K LR+DNG E+ Sbjct: 455 RYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 514 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRML 392 +++C GI T T QQN VAERMN+TL E+ R + Sbjct: 515 SEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 553 Score = 83.2 bits (204), Expect(5) = 2e-75 Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%) Frame = +1 Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650 DMLI ++I KIN LKK L+K+F +KDL A K+IL M I+R+ N + LS+ Y+++VL Sbjct: 945 DMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 1004 Query: 1651 ERFNMYTCKPGSTPLAPHFKLLELQ 1725 RFNM KP STPL HFKL + Q Sbjct: 1005 XRFNMNEAKPVSTPLGSHFKLSKEQ 1029 Score = 48.5 bits (114), Expect(5) = 2e-75 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHV-NEGNLESKAKNRV 606 V TA++++N P+ ++F+ P EVW G+ FS+L VFG +Y H+ ++ + AK+++ Sbjct: 568 VSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKI 627 Query: 607 C 609 C Sbjct: 628 C 628 Score = 32.0 bits (71), Expect(5) = 2e-75 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 11 TGKHKTRRVLYYIHSDLWGPSKLSSKDGKSY 103 TG+ L +H+DLWGPS ++S G Y Sbjct: 426 TGRTPKAEKLELVHTDLWGPSPVASLGGSRY 456 >emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera] Length = 1246 Score = 128 bits (321), Expect(5) = 4e-75 Identities = 101/295 (34%), Positives = 143/295 (48%), Gaps = 8/295 (2%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFV----EFLGNKNENVELSG- 763 IGY D GY+ W K I SR++ F+E + R E K+E V L Sbjct: 640 IGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDEL 699 Query: 764 -ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXX 940 E T +K E + E+ + VDL + + R TR P+ N + + Sbjct: 700 TESTVQKGGEEDKENVNSQVDLSTPVVEVR------RSSRNTRPPQRYSPVLNYLLLTDG 753 Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMG--LSEKTIGEEGSWMQMG 1114 A LQ N+ +D + S + L+E +G++ + Sbjct: 754 GEPECYDEA--------LQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWV 805 Query: 1115 LQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQ 1294 + + + S R +A LV K F +KEGIDY EIF PV K S+I +L L+ Sbjct: 806 YRIKNEHDGSKR--YKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLE 863 Query: 1295 QLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 QLDVK AFL+GDLEE +YM QPEGF+ G+E+ V +L+KSLYGLKQ+P+ WYK+F Sbjct: 864 QLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKF 918 Score = 83.2 bits (204), Expect(5) = 4e-75 Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%) Frame = +1 Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650 DMLI ++I KIN LKK L+K+F +KDL A K+IL M I+R+ N + LS+ Y+++VL Sbjct: 954 DMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 1013 Query: 1651 ERFNMYTCKPGSTPLAPHFKLLELQ 1725 RFNM KP STPL HFKL + Q Sbjct: 1014 SRFNMNEAKPVSTPLGSHFKLSKEQ 1038 Score = 81.6 bits (200), Expect(5) = 4e-75 Identities = 44/99 (44%), Positives = 58/99 (58%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R TFI+D SRKV V LK K D F FK+ K ++E + +K LR+DNG E+ Sbjct: 464 RYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETETGLKVKCLRSDNGGEYIDGGF 523 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRML 392 +++C GI T T QQN VAERMN+TL E+ R + Sbjct: 524 SEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 562 Score = 48.5 bits (114), Expect(5) = 4e-75 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHV-NEGNLESKAKNRV 606 V TA++++N P+ ++F+ P EVW G+ FS+L VFG +Y H+ ++ + AK+++ Sbjct: 577 VSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKI 636 Query: 607 C 609 C Sbjct: 637 C 637 Score = 32.0 bits (71), Expect(5) = 4e-75 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 11 TGKHKTRRVLYYIHSDLWGPSKLSSKDGKSY 103 TG+ L +H+DLWGPS ++S G Y Sbjct: 435 TGRTPKAEKLELVHTDLWGPSPVASLGGSRY 465 >gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 140 bits (352), Expect(5) = 9e-75 Identities = 106/297 (35%), Positives = 148/297 (49%), Gaps = 10/297 (3%) Frame = +2 Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778 +GY D VKGY+LW + K + SRD+ F E+ + + +K F +E E +KE Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTFKETAILQIE---EKSKE 733 Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940 D E++ V E+ EP + G + RQT+KP D + C+ Sbjct: 734 SDSS-----EAESVHEEQ----EPDDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCLIAE 784 Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108 L N M H+ + + ++ ++ K IG + W+ Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNK--WVY 838 Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288 K GN R RA LV K +++KEGID+NEIF PV + ++I DL Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894 Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459 L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951 Score = 87.8 bits (216), Expect(5) = 9e-75 Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 1/109 (0%) Frame = +3 Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275 R +FI+D+SR++ V +K K D F FK K IE + + IK LRTDNG E+ E Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560 Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVF 419 FC+ GI R T +T QQN VAERMN+TL+E+TR ML A+M+ F Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSF 609 Score = 71.2 bits (173), Expect(5) = 9e-75 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%) Frame = +1 Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650 D+L+V N ++ LK L +EFD+KDL KIL M+I R+ + + LS+K Y+ +VL Sbjct: 988 DILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047 Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713 RFNM CKP STPL +FKL Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068 Score = 47.4 bits (111), Expect(5) = 9e-75 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +1 Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606 V TA +++N P+ ID KTP E+W G+P +S L VFG P Y N + + K+R Sbjct: 614 VKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673 Query: 607 C 609 C Sbjct: 674 C 674 Score = 25.8 bits (55), Expect(5) = 9e-75 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112 +++ +L IHSD+W KLS + ++ F Sbjct: 477 RSKHILDLIHSDVWESPKLSLGGARYFVSF 506