BLASTX nr result

ID: Atropa21_contig00020394 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00020394
         (1878 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   155   9e-97
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   151   4e-96
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   154   1e-95
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     155   1e-95
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   148   6e-95
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     160   8e-95
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   147   9e-94
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   147   1e-93
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           146   9e-93
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   156   3e-88
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     156   3e-88
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   142   5e-85
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   132   1e-84
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   137   3e-78
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              141   9e-76
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              141   1e-75
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              141   1e-75
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]   127   2e-75
emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]   128   4e-75
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              140   9e-75

>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  155 bits (393), Expect(5) = 9e-97
 Identities = 108/313 (34%), Positives = 162/313 (51%), Gaps = 26/313 (8%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
            +GY  GVKGYKLWC    K + SR++ F ES +L+ +    V VE     +  VE    S
Sbjct: 892  LGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISS 951

Query: 761  GELTKEKDQETNVEDESKDVDLEELTINEP-YTIAKGKEERQTRKPECLIDQANCICVXX 937
            G   +++D   N ++   +     +    P  +IAK + +R  + P+  I++AN +    
Sbjct: 952  GHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIV---- 1007

Query: 938  XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099
                     A+ +  +  ++G       +   V+ D    +++   +M   EK      +
Sbjct: 1008 ---------AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK----NHT 1054

Query: 1100 WMQMGLQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKH 1240
            W  + L KE+             G   S     +A L+AK +S+  GID+N++F PV KH
Sbjct: 1055 WELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKH 1114

Query: 1241 SSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLY 1420
            SSI          D EL+Q+DVK AFL+G+LEE IYM+QP+GF+  GKE+ V +LKKSLY
Sbjct: 1115 SSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLY 1174

Query: 1421 GLKQSPK*WYKRF 1459
            GLKQSP+ WYKRF
Sbjct: 1175 GLKQSPRQWYKRF 1187



 Score =  108 bits (269), Expect(5) = 9e-97
 Identities = 54/100 (54%), Positives = 69/100 (69%)
 Frame = +3

Query: 96   RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
            R + T ++D+SRKV    LK K  AF+ FKE K ++ERQ ER +K LRTDNG+EFCS+  
Sbjct: 719  RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 778

Query: 276  NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
              +C+  GI RH T  +T QQN VAERMN+T+I K R LL
Sbjct: 779  KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLL 818



 Score = 83.2 bits (204), Expect(5) = 9e-97
 Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNVVNL--SR 1626
            IYL  YVD MLI A + ++I  LK  L+ EF++KDL A KKIL MEI R+ +   L  S+
Sbjct: 1215 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQ 1274

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
            K YIE+VL RFNM+  KP STPLA HF+L
Sbjct: 1275 KGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1303



 Score = 57.8 bits (138), Expect(5) = 9e-97
 Identities = 28/55 (50%), Positives = 37/55 (67%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           V TA +++N  P++AID KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 832 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 886



 Score = 41.6 bits (96), Expect(5) = 9e-97
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T  +L Y+HSDLWGP++ +S  G  Y+
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYM 721


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  151 bits (382), Expect(5) = 4e-96
 Identities = 110/308 (35%), Positives = 156/308 (50%), Gaps = 19/308 (6%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVE-LSGEL 769
            L +GY  GVKGYKLW     K   SR++ F+E  + N         G  +E  + +S ++
Sbjct: 676  LFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQYVSVQV 735

Query: 770  TKEKDQETN-VEDESKDVDLEELTINEPY--TIAKGKEERQTRKPECLIDQANCICVXXX 940
                DQET  V ++  D      ++ +P    IA  + +R    P  LI++ + +     
Sbjct: 736  EHVDDQETEIVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMV----- 790

Query: 941  XXXXXXXXAFLVY*SNFLQGC--NTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMG 1114
                    ++     N L+        V+ D    +S+ + +M   EK     G+W  + 
Sbjct: 791  ----YYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEK----NGTWELVH 842

Query: 1115 LQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHX 1255
            L K++             G   S     +  LVAK FS+  G+DYN++F PV KHSSI  
Sbjct: 843  LPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRT 902

Query: 1256 XXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQS 1435
                    DLEL+QLDVK  FL+G+LEE IYMDQPEGF+  GKED+V +LK+SLYGLKQS
Sbjct: 903  FFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962

Query: 1436 PK*WYKRF 1459
            P+ WYKRF
Sbjct: 963  PRQWYKRF 970



 Score =  105 bits (261), Expect(5) = 4e-96
 Identities = 59/119 (49%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D+SRK     LK K D F AFKE K +IERQ E+ +K L TDNG EFCS+  
Sbjct: 505 RYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAF 564

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           +D+C   GI RH T   T QQN VAERMN+T+I K R ML  A+M+  F   +++   Y
Sbjct: 565 DDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACY 623



 Score = 94.4 bits (233), Expect(5) = 4e-96
 Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSR 1626
            IYL  YVD MLI A +  +I  LKK L+ EFD+KDL A KKIL MEI R+ N  ++ LS+
Sbjct: 998  IYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQ 1057

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
            + YI++VL+RFNM+  KP STP+APHFKL  LQ
Sbjct: 1058 QSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQ 1090



 Score = 50.8 bits (120), Expect(5) = 4e-96
 Identities = 23/54 (42%), Positives = 35/54 (64%)
 Frame = +1

Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           +TA +++N  P+  ++ KTP E+W G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 619 NTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRA 672



 Score = 42.7 bits (99), Expect(5) = 4e-96
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H+T+ +L Y+H+DLWGPS+  S  G  Y+
Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  154 bits (389), Expect(5) = 1e-95
 Identities = 113/308 (36%), Positives = 155/308 (50%), Gaps = 19/308 (6%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVE-LSGEL 769
            L +GY  GVKGYKLW     K   SR + F+ES + N         G  +E  + +S ++
Sbjct: 676  LFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYVSVQV 735

Query: 770  TKEKDQETN-VEDESKDVDLEELTINEPYT--IAKGKEERQTRKPECLIDQANCICVXXX 940
                DQET  V ++  D       + +P    IA  + +R    P  LI++ + +     
Sbjct: 736  EHVDDQETEIVGNDVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFS 795

Query: 941  XXXXXXXXAFLVY*SNFLQGCN--TMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMG 1114
                           N L+        V+ D    +S+ + +M   EK     G+W  + 
Sbjct: 796  CAEQV---------ENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKN----GTWELVH 842

Query: 1115 LQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHX 1255
            L K++             G   S     +A LVAK FS+  G+DYN++F PV KHSSI  
Sbjct: 843  LPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRT 902

Query: 1256 XXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQS 1435
                    DLEL+QLDVK AFL+G+LEE IYMDQPEGF+  GKED+V +LK+SLYGLKQS
Sbjct: 903  FFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962

Query: 1436 PK*WYKRF 1459
            P+ WYKRF
Sbjct: 963  PRQWYKRF 970



 Score =  108 bits (269), Expect(5) = 1e-95
 Identities = 60/119 (50%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D+SRKV    LK K D F AFKE K +IERQ E+ +K LRTDN  EFCS+  
Sbjct: 505 RYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAF 564

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           +D+C   GI RH T   T QQN VAERMN+T+I K R ML  A+M+  F   +++   Y
Sbjct: 565 DDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACY 623



 Score = 89.7 bits (221), Expect(5) = 1e-95
 Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSR 1626
            IYL  YVD +LI A +  +I  LKK L+ EFD+KDL A KKIL MEI R+ N  ++ LS+
Sbjct: 998  IYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQ 1057

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
            + YI++VL+ FNM+  KP STP+APHFKL  LQ
Sbjct: 1058 QSYIKKVLQCFNMHDAKPVSTPIAPHFKLSALQ 1090



 Score = 47.8 bits (112), Expect(5) = 1e-95
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +1

Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           +TA +++N  P+  ++ KTP E+W G P+ +S L VFG   Y HV+   LE +A
Sbjct: 619 NTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRA 672



 Score = 42.7 bits (99), Expect(5) = 1e-95
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H+T+ +L Y+H+DLWGPS+  S  G  Y+
Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  155 bits (392), Expect(5) = 1e-95
 Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 26/313 (8%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
            +GY  GVKGYKLWC    K + SR++ F ES IL+ +    V VE     +  VE    S
Sbjct: 657  LGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 716

Query: 761  GELTKEKDQETNVE-DESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
            G   +++D   N +    +D D   +  +   +IAK K +R  + P   I++A  +    
Sbjct: 717  GHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIV---- 772

Query: 938  XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099
                     A+ +  +  ++G       +   V+ D    +++   +M   EK      +
Sbjct: 773  ---------AYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK----NHT 819

Query: 1100 WMQMGLQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKH 1240
            W  + L KE+             G   S     +A LVAK +S+  GID+N++F PV KH
Sbjct: 820  WELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKH 879

Query: 1241 SSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLY 1420
            SSI          D EL+Q++VK AFL+G+LEE IYM+QPEGF+  GKE+ V +LKKSLY
Sbjct: 880  SSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLY 939

Query: 1421 GLKQSPK*WYKRF 1459
            GLKQSP+ WYKRF
Sbjct: 940  GLKQSPRQWYKRF 952



 Score =  103 bits (258), Expect(5) = 1e-95
 Identities = 52/100 (52%), Positives = 68/100 (68%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T ++D+SRKV    LK K  AF+ FKE K ++ERQ ER +K LRTDNG+EFCS+  
Sbjct: 484 RYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 543

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             +C+  GI  H T  +T QQN VAERMN+T+I K R +L
Sbjct: 544 KSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCML 583



 Score = 85.5 bits (210), Expect(5) = 1e-95
 Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNV--VNLSR 1626
            IYL  YVD MLI A + ++I  LK  L+ EF++KDL A KKIL MEI RE +   + LS+
Sbjct: 980  IYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 1039

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
            K YIE+VL RFNM+  KP STPLA HF+L
Sbjct: 1040 KGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1068



 Score = 57.4 bits (137), Expect(5) = 1e-95
 Identities = 28/55 (50%), Positives = 36/55 (65%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           V TA +++N  P +AID KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 597 VSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRA 651



 Score = 40.4 bits (93), Expect(5) = 1e-95
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T  +L Y+HSDLWGP+  +S  G  Y+
Sbjct: 453 FNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYM 486


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  148 bits (373), Expect(5) = 6e-95
 Identities = 112/331 (33%), Positives = 157/331 (47%), Gaps = 42/331 (12%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSI----LNFRKVFVEFLGNKNENVELS 760
            L +GY  GVKGYKLW     K   SR + F+ES +    L    V  + L   +  VE  
Sbjct: 675  LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHV 734

Query: 761  GELT--------KEKDQETNVEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPECL 904
             + T        ++ D   +V D+    D+++    L + E   IA+ K +R T+ P+ L
Sbjct: 735  DDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRL 794

Query: 905  IDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGVS 1045
            I++ N                     S +   C     N              D  + +S
Sbjct: 795  IEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWIS 834

Query: 1046 SQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKVF 1186
            +   +M   EK      +W  + L K++             G   S     +A LVA+ +
Sbjct: 835  AMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGY 890

Query: 1187 SRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEG 1366
            S+  G+DYN++F PV KHSSI          DLEL+QLDVK AFL+G+LEE IYMDQPEG
Sbjct: 891  SQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEG 950

Query: 1367 FLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            F+  GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 951  FIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981



 Score =  110 bits (274), Expect(5) = 6e-95
 Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D+SRKV    LK K D F AFK  K +IERQ ER +K LRTDNG EFCS   
Sbjct: 504 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           ND+C   GI RH T  +T QQN VAERMN+T+I + R ML  A+M+  F   ++    Y
Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622



 Score = 89.4 bits (220), Expect(5) = 6e-95
 Identities = 52/93 (55%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A +  +I  LKKLL+ EFD+KDL + KKILVMEI R+  + ++ LS+
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQ 1068

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
              YI++VL+RFNM   K  STP+APHFKL   Q
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101



 Score = 51.2 bits (121), Expect(5) = 6e-95
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +1

Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           TA +++N  P+  ++ KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671



 Score = 41.6 bits (96), Expect(5) = 6e-95
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T+  L Y+H+DLWGPSK  S  G  Y+
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  160 bits (405), Expect(5) = 8e-95
 Identities = 111/301 (36%), Positives = 160/301 (53%), Gaps = 14/301 (4%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
            +GY+ GVKGYKLWC    K + SR++ F ES +L+ +    V VE     +  VE    S
Sbjct: 594  LGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEHLISS 653

Query: 761  GELTKEKDQETNVE-DESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
            G   +++D   N +    +D D   +  +   +IAK + +R T+ P   I++AN +    
Sbjct: 654  GHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYAL 713

Query: 938  XXXXXXXXXAFLVY*SNFL--QGCNT-MAVNHDGRDGVSSQES----DMGLSEKTIGEEG 1096
                     A     S+ +    CN  +   HD  + +    S     +   +K I    
Sbjct: 714  SVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPI--RC 771

Query: 1097 SWMQMGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXX 1276
             W+    +++ G   S     +A LVAK +S+  GID+N++F PV KHSSI         
Sbjct: 772  KWI---FKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAM 828

Query: 1277 FDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKR 1456
             D EL+Q+DVK AFL+G+LEE IYM+QPEGF+  GKE+ V +LKKSLYGLKQSP+ WYKR
Sbjct: 829  HDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 888

Query: 1457 F 1459
            F
Sbjct: 889  F 889



 Score =  105 bits (261), Expect(5) = 8e-95
 Identities = 52/100 (52%), Positives = 68/100 (68%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T ++D+SRKV    LK K  AF+ FKE K ++ERQ ER +K LRTDNG+E CS+  
Sbjct: 421 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIF 480

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             +C+  GI RH T  +T QQN VAERMN+T+I K R +L
Sbjct: 481 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCML 520



 Score = 76.6 bits (187), Expect(5) = 8e-95
 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A + ++I  LK  L+ EF++KDL A KKIL MEI RE  +  + LS+
Sbjct: 917  IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 976

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
            K YIE+VL RFNM+  K  ST LA HF+L
Sbjct: 977  KCYIEKVLHRFNMHDAKLVSTLLAAHFRL 1005



 Score = 56.2 bits (134), Expect(5) = 8e-95
 Identities = 27/54 (50%), Positives = 36/54 (66%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESK 591
           V TA +++N  P++AID KTP EVW G P+ +S L VFG   Y HV+ G LE +
Sbjct: 534 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPR 587



 Score = 41.6 bits (96), Expect(5) = 8e-95
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T  +L Y+HSDLWGP++ +S  G  Y+
Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 423


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  147 bits (370), Expect(5) = 9e-94
 Identities = 109/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736
            L +GY  GVKGYKLW     K   SR + F+ES +               +++ ++ + +
Sbjct: 675  LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 733

Query: 737  KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901
             +++  +  E   E+D   N V D+    D+++    L + E   IA+ K +R T+ P+ 
Sbjct: 734  VDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKR 793

Query: 902  LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042
            LI++ N                     S +   C     N              D  + +
Sbjct: 794  LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 833

Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKV 1183
            S+   +M   EK      +W  + L K++             G   S     +A LVA+ 
Sbjct: 834  SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889

Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363
            +S+  G+DYN++F PV KHSSI          DLEL+QLDVK AFL+G+LEE IYMDQPE
Sbjct: 890  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949

Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            GF+  GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 950  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981



 Score =  110 bits (274), Expect(5) = 9e-94
 Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D+SRKV    LK K D F AFK  K +IERQ ER +K LRTDNG EFCS   
Sbjct: 504 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           ND+C   GI RH T  +T QQN VAERMN+T+I + R ML  A+M+  F   ++    Y
Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622



 Score = 86.7 bits (213), Expect(5) = 9e-94
 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A +  +I  LKKLL+ EFD+KDL + KKIL MEI R+  + ++ LS+
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
              YI++VL+RFNM   K  STP+APHFKL   Q
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101



 Score = 51.2 bits (121), Expect(5) = 9e-94
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +1

Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           TA +++N  P+  ++ KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671



 Score = 41.6 bits (96), Expect(5) = 9e-94
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T+  L Y+H+DLWGPSK  S  G  Y+
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  147 bits (370), Expect(5) = 1e-93
 Identities = 109/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736
            L +GY  GVKGYKLW     K   SR + F+ES +               +++ ++ + +
Sbjct: 675  LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 733

Query: 737  KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901
             +++  +  E   E+D   N V D+    D+++    L + E   IA+ K +R T+ P+ 
Sbjct: 734  VDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKR 793

Query: 902  LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042
            LI++ N                     S +   C     N              D  + +
Sbjct: 794  LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 833

Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKV 1183
            S+   +M   EK      +W  + L K++             G   S     +A LVA+ 
Sbjct: 834  SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889

Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363
            +S+  G+DYN++F PV KHSSI          DLEL+QLDVK AFL+G+LEE IYMDQPE
Sbjct: 890  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949

Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            GF+  GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 950  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981



 Score =  109 bits (273), Expect(5) = 1e-93
 Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D+SRKV    LK K D F AFK  K +IERQ ER +K LRTDNG EFCS   
Sbjct: 504 RYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           ND+C   GI RH T  +T QQN VAERMN+T+I + R ML  A+M+  F   ++    Y
Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622



 Score = 86.7 bits (213), Expect(5) = 1e-93
 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A +  +I  LKKLL+ EFD+KDL + KKIL MEI R+  + ++ LS+
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
              YI++VL+RFNM   K  STP+APHFKL   Q
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101



 Score = 50.8 bits (120), Expect(5) = 1e-93
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +1

Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           TA +++N  P+  ++ KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRA 671



 Score = 41.6 bits (96), Expect(5) = 1e-93
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T+  L Y+H+DLWGPSK  S  G  Y+
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  146 bits (369), Expect(5) = 9e-93
 Identities = 108/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736
            L +GY  GVKGYKLW     K   SR + F+ES +               +++ ++ + +
Sbjct: 677  LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 735

Query: 737  KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901
             +++  +  E   E+D   N V D+    D+++    L + E  +IA+ K +R T+ P+ 
Sbjct: 736  VDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKR 795

Query: 902  LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042
            LI++ N                     S +   C     N              D  + +
Sbjct: 796  LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 835

Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKERGNF*-------------SGRC*VRA*LVAKV 1183
            S+   +M   EK      +W  + L K++                 S     +A LVA+ 
Sbjct: 836  SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARG 891

Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363
            +S+  G+DYN++F PV KHSSI          DLEL+QLDVK AFL+G+LEE IYMDQPE
Sbjct: 892  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 951

Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            GF+  GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 952  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 983



 Score =  107 bits (266), Expect(5) = 9e-93
 Identities = 60/119 (50%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D+SRKV    LK K D F AFK  K +IERQ ER +K L TDNG EFCS   
Sbjct: 506 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAF 565

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           ND+C   GI RH T  +T QQN VAERMN+T+I + R ML  A+M+  F   ++    Y
Sbjct: 566 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 624



 Score = 86.7 bits (213), Expect(5) = 9e-93
 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A +  +I  LKKLL+ EFD+KDL + KKIL MEI R+  + ++ LS+
Sbjct: 1011 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1070

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
              YI++VL+RFNM   K  STP+APHFKL   Q
Sbjct: 1071 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1103



 Score = 51.2 bits (121), Expect(5) = 9e-93
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +1

Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           TA +++N  P+  ++ KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 621 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 673



 Score = 41.6 bits (96), Expect(5) = 9e-93
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T+  L Y+H+DLWGPSK  S  G  Y+
Sbjct: 475 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 508


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  156 bits (394), Expect(5) = 3e-88
 Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 20/307 (6%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE--LSG 763
            +GY  GVKGYKLWC    K + SR++ F ES IL+ +    V VE     +  VE  +S 
Sbjct: 720  LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 779

Query: 764  ELTKEKDQETNVEDES--KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
                EK+     +D    +D D   +  +   +IAK K +R  + P   I++AN +    
Sbjct: 780  GHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839

Query: 938  XXXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117
                     A     S  +       V+ D    +++   +M    +++ +  +W  + L
Sbjct: 840  SVAEEIEGNAEPSTYSEAI-------VSDDCNRWITAMHDEM----ESLKKNHTWEFVKL 888

Query: 1118 QKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXX 1258
             KE+             G   S     +A LVAK +S+  GID+N++F P+ KHSSI   
Sbjct: 889  PKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948

Query: 1259 XXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSP 1438
                   D EL+Q+DVK AFL+G+LEE IYM+QPEGF+  GKE+ V +LKKSLYGLKQSP
Sbjct: 949  LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008

Query: 1439 K*WYKRF 1459
            + WYKRF
Sbjct: 1009 RQWYKRF 1015



 Score =  101 bits (251), Expect(5) = 3e-88
 Identities = 50/100 (50%), Positives = 66/100 (66%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T ++D+SRKV    LK K  AF+ FKE K ++ERQ E+ +K LRTDNG+EFCS+  
Sbjct: 547 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             +C+  GI  H T  +T QQN VAERMN  +I K R +L
Sbjct: 607 KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646



 Score = 66.6 bits (161), Expect(5) = 3e-88
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A + ++I  LK  L+ EF +KDL A KKIL MEI RE  +  + LS+
Sbjct: 1043 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQ 1102

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAP 1701
            K YI++VL RFNM+  KP    L P
Sbjct: 1103 KGYIKKVLRRFNMHDVKPIIFRLCP 1127



 Score = 54.3 bits (129), Expect(5) = 3e-88
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           V T  +++N  P++A D KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 714



 Score = 39.7 bits (91), Expect(5) = 3e-88
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T  +L Y+HSDLWGP+  +S  G  Y+
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  156 bits (394), Expect(5) = 3e-88
 Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 20/307 (6%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE--LSG 763
            +GY  GVKGYKLWC    K + SR++ F ES IL+ +    V VE     +  VE  +S 
Sbjct: 720  LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 779

Query: 764  ELTKEKDQETNVEDES--KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
                EK+     +D    +D D   +  +   +IAK K +R  + P   I++AN +    
Sbjct: 780  GHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839

Query: 938  XXXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117
                     A     S  +       V+ D    +++   +M    +++ +  +W  + L
Sbjct: 840  SVAEEIEGNAEPSTYSEAI-------VSDDCNRWITAMHDEM----ESLKKNHTWEFVKL 888

Query: 1118 QKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXX 1258
             KE+             G   S     +A LVAK +S+  GID+N++F P+ KHSSI   
Sbjct: 889  PKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948

Query: 1259 XXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSP 1438
                   D EL+Q+DVK AFL+G+LEE IYM+QPEGF+  GKE+ V +LKKSLYGLKQSP
Sbjct: 949  LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008

Query: 1439 K*WYKRF 1459
            + WYKRF
Sbjct: 1009 RQWYKRF 1015



 Score =  101 bits (251), Expect(5) = 3e-88
 Identities = 50/100 (50%), Positives = 66/100 (66%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T ++D+SRKV    LK K  AF+ FKE K ++ERQ E+ +K LRTDNG+EFCS+  
Sbjct: 547 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             +C+  GI  H T  +T QQN VAERMN  +I K R +L
Sbjct: 607 KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646



 Score = 66.2 bits (160), Expect(5) = 3e-88
 Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
            IYL  YVD MLI A + ++I  LK  L+ EF +KDL A KKIL MEI RE  +  + LS+
Sbjct: 1043 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQ 1102

Query: 1627 KRYIERVLERFNMYTCKP 1680
            K YI++VL RFNM+  KP
Sbjct: 1103 KGYIKKVLRRFNMHDVKP 1120



 Score = 54.3 bits (129), Expect(5) = 3e-88
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           V T  +++N  P++A D KTP EVW G P+ +S L VFG   Y HV+ G LE +A
Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 714



 Score = 39.7 bits (91), Expect(5) = 3e-88
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T  +L Y+HSDLWGP+  +S  G  Y+
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  142 bits (358), Expect(5) = 5e-85
 Identities = 96/294 (32%), Positives = 153/294 (52%), Gaps = 7/294 (2%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN--FRKVFVEFLGNKNENVE---LSG 763
            +GY DGVKG+++W  +  + I SR++ FDES +L    +       G+ ++ VE   +  
Sbjct: 663  VGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQN 722

Query: 764  ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXXX 943
            E   ++ +E + E +++    E +  +   +IA+ +  R   +P       + +      
Sbjct: 723  ESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQV 782

Query: 944  XXXXXXXAFLVY*SNFLQGCNT--MAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117
                       Y    L   +    A   D  + +   ++   L  +  G +    +   
Sbjct: 783  AEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQT-WDLVIQPSGRKIITCKWVF 841

Query: 1118 QKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQ 1297
            +K+ G   +     +A +VA+ F+++EG+DYNEIF PV +H+SI          +LEL+Q
Sbjct: 842  KKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQ 901

Query: 1298 LDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            LDVK AFL+G+LEE IYM QP+GF   GKE+HV +LKKSLYGLKQSP+ WYKRF
Sbjct: 902  LDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRF 955



 Score =  108 bits (269), Expect(5) = 5e-85
 Identities = 54/100 (54%), Positives = 70/100 (70%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   + I+D+SR   V ++K K +AF+ FKE K L+E Q  + IK LRTDNGLEFC  E 
Sbjct: 490 RFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEF 549

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
           + FC+  GI+RH T RNT QQN VAERMN+TL+E+ R +L
Sbjct: 550 DQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCML 589



 Score = 67.4 bits (163), Expect(5) = 5e-85
 Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEIL--RENNVVNLSR 1626
            IYL  YVD MLI A     I  LK LL+ EF++KDL A +KIL MEI+  RE   + LS+
Sbjct: 984  IYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQ 1043

Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
            + YI++VL RF M + KP  TP A +  L
Sbjct: 1044 RSYIQKVLARFGMSSSKPIDTPSAANIHL 1072



 Score = 54.3 bits (129), Expect(5) = 5e-85
 Identities = 27/59 (45%), Positives = 36/59 (61%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKAKNRV 606
           V TA +++N  P   I  KTP E+W G+ + +S L  FG   YYHV+EG LE +AK  V
Sbjct: 603 VSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGV 661



 Score = 34.7 bits (78), Expect(5) = 5e-85
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDG 94
           F    H+T+  L YIHSD WGP ++ S  G
Sbjct: 459 FPKAIHRTKGTLDYIHSDCWGPCRVESLGG 488


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
            gi|18542925|gb|AAL75759.1| Putative pol polyprotein
            [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1005

 Score =  132 bits (332), Expect(5) = 1e-84
 Identities = 107/302 (35%), Positives = 139/302 (46%), Gaps = 13/302 (4%)
 Frame = +2

Query: 593  LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELT 772
            L +GY  GVKGYKLW     K   SR + F                   NE+V  +  L 
Sbjct: 413  LFLGYGSGVKGYKLWNPETNKTFMSRSVIF-------------------NESVMFNDSLP 453

Query: 773  KEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXXXXXX 952
                  T+ +DE                IA  + +R    P  LI++ + +         
Sbjct: 454  ------TDPQDEP---------------IAHRRTKRSCGAPVRLIEECDMV--------- 483

Query: 953  XXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGLQKER- 1129
                AF    S   Q  NT+         V+ QE    L +      G+W  + L K++ 
Sbjct: 484  --YYAF----SCAEQVKNTLEPATYTEAVVAMQEEMQSLEKN-----GTWELVHLPKQKK 532

Query: 1130 ------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXX 1273
                        G   S     +A LVAK FS+  G+DYN++F PV KHSSI        
Sbjct: 533  PVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVA 592

Query: 1274 XFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYK 1453
              DLEL+QLDVK AFL+G+LEE IYMDQPEGF+  GKE +V +LK+S YGLKQSP+ WYK
Sbjct: 593  MHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLKQSPRQWYK 652

Query: 1454 RF 1459
            RF
Sbjct: 653  RF 654



 Score =  102 bits (254), Expect(5) = 1e-84
 Identities = 59/119 (49%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T I+D SRKV    LK K D F AFKE K +IERQ E+ +K LRTDNG EFCS+  
Sbjct: 242 RYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNGGEFCSDAF 301

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
           +D+    GI RH T   T QQN VAERMN+T+I K   ML  A+M+  F   +++   Y
Sbjct: 302 DDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACY 360



 Score = 85.9 bits (211), Expect(5) = 1e-84
 Identities = 50/92 (54%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
 Frame = +1

Query: 1456 IYLR*YVDMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSRK 1629
            IYL    DMLI A +  +I  LKK L+ EFD+KDL A KKIL MEI R+ N  ++ LS++
Sbjct: 682  IYLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQ 741

Query: 1630 RYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
             YI+ VL+RFNM+  K  S P+APHFKL  LQ
Sbjct: 742  SYIKNVLQRFNMHDAKLVSIPIAPHFKLSVLQ 773



 Score = 48.1 bits (113), Expect(5) = 1e-84
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +1

Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           +TA +++N  P+  ++ KTP EVW G  + +S L VFG   Y HV+ G LE +A
Sbjct: 356 NTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAHVDNGKLEPRA 409



 Score = 37.0 bits (84), Expect(5) = 1e-84
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+   H+ + +L Y+H+DLWGPS   S  G  Y+
Sbjct: 211 FNISVHRIKGILDYVHADLWGPSHKPSLGGARYM 244


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  137 bits (344), Expect(5) = 3e-78
 Identities = 104/301 (34%), Positives = 155/301 (51%), Gaps = 14/301 (4%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
            +GY  GVKGYKLWC    K + SR++ F ES +L+ +    V VE     +  VE    S
Sbjct: 646  LGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISS 705

Query: 761  GELTKEKDQETNVEDES-KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
            G   ++++   N++    +D D   +  +  ++IAK K +R  + P   I++AN +    
Sbjct: 706  GHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIV---- 761

Query: 938  XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099
                     A+ +  +  ++G       +   V+ D    +++   +M   EK      +
Sbjct: 762  ---------AYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKN----HT 808

Query: 1100 WMQMGLQKERGNF*SGRC*VRA*LVAKVFSRKEGID-YNEIFYPVAKHSSIHXXXXXXXX 1276
            W  + L KE+      RC         +F RKEG+   +E  Y   K SSI         
Sbjct: 809  WELVKLPKEKKPI---RC-------KWIFKRKEGMSPSDEARY---KASSIRTLLSIVAM 855

Query: 1277 FDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKR 1456
            +D EL+Q+DVK AFL+G+LEE IYM+QPEGF+  GKE+ V +LKKSLYGLKQSP+ WYKR
Sbjct: 856  YDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 915

Query: 1457 F 1459
            F
Sbjct: 916  F 916



 Score =  106 bits (264), Expect(5) = 3e-78
 Identities = 52/100 (52%), Positives = 69/100 (69%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R + T ++D+SRKV    LK K  AF+ FKE K ++ERQ ER +K LRTDNG++FCS+  
Sbjct: 473 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIF 532

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             +C+  GI RH T  +T QQN VAERMN+T+I K R +L
Sbjct: 533 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCML 572



 Score = 53.1 bits (126), Expect(5) = 3e-78
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
           V TA +++N  P++AID KTP +VW G P+ +S L VFG   Y HV+   LE +A
Sbjct: 586 VSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRA 640



 Score = 46.2 bits (108), Expect(5) = 3e-78
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +1

Query: 1456 IYLR*YV-DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE 1602
            IYL  YV DMLI A +  +I  LK  L+ EF++KDL A KKIL MEI RE
Sbjct: 944  IYLLLYVNDMLIAAKDKLEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 993



 Score = 41.6 bits (96), Expect(5) = 3e-78
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +2

Query: 5   FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
           F+T  H T  +L Y+HSDLWGP++ +S  G  Y+
Sbjct: 442 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 475


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  141 bits (356), Expect(5) = 9e-76
 Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
            +GY D VKGY+LW  +  K + SRD+ F E+ + + +K       N + + E +    +E
Sbjct: 677  LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQK-------NDSTSKETAIVQMEE 729

Query: 779  KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
            K +E++   E++ V  E+    EP  +  G  +  RQT+KP    D      +  C+   
Sbjct: 730  KSKESD-SSEAESVHEEQ----EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784

Query: 941  XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
                      L    N       M   H+  + +   ++    ++    K IG +  W+ 
Sbjct: 785  EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838

Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
                K  GN    R   RA LV K +++KEGID+NEIF PV + ++I          DL 
Sbjct: 839  K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894

Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            L+QLDVK AFL+G+LEE IYM QPEGF   GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895  LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951



 Score = 90.1 bits (222), Expect(5) = 9e-76
 Identities = 49/100 (49%), Positives = 64/100 (64%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   +FI+D+SR++ V  +K K D F  FK  K  IE + E+ IK LRTDNG E+   E 
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEF 560

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             FC+  GI R  T  +T QQN VAERMN+TL+E+TR +L
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600



 Score = 72.8 bits (177), Expect(5) = 9e-76
 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
            DML+V  N  ++  LK  L +EFD+KDL    KIL M+I R+  +  + LS+K Y+ +VL
Sbjct: 988  DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047

Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
             RFNM  CKP STPL  +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068



 Score = 47.8 bits (112), Expect(5) = 9e-76
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRVC 609
           TA +++N  P+ AID KTP E+W G+P  +S L VFG P Y   N +   +   K+R C
Sbjct: 616 TACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKC 674



 Score = 23.5 bits (49), Expect(5) = 9e-76
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 23  KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
           +++ +L  IHSD+W   ++S    + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSF 506


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  141 bits (356), Expect(5) = 1e-75
 Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
            +GY D VKGY+LW  +  K + SRD+ F E+ + + +K       N + + E +    +E
Sbjct: 677  LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQK-------NDSTSKETAIVQMEE 729

Query: 779  KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
            K +E++   E++ V  E+    EP  +  G  +  RQT+KP    D      +  C+   
Sbjct: 730  KSKESD-SSEAESVHEEQ----EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784

Query: 941  XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
                      L    N       M   H+  + +   ++    ++    K IG +  W+ 
Sbjct: 785  EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838

Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
                K  GN    R   RA LV K +++KEGID+NEIF PV + ++I          DL 
Sbjct: 839  K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894

Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            L+QLDVK AFL+G+LEE IYM QPEGF   GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895  LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951



 Score = 88.2 bits (217), Expect(5) = 1e-75
 Identities = 48/100 (48%), Positives = 63/100 (63%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   +FI+D+SR++ V  +K K D F  FK  K  IE +  + IK LRTDNG E+   E 
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEF 560

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             FC+  GI R  T  +T QQN VAERMN+TL+E+TR +L
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600



 Score = 72.8 bits (177), Expect(5) = 1e-75
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNVVN--LSRKRYIERVL 1650
            DML+V  N  ++  LK  L +EFD+KDL    KIL M+I R+   +   LS+K Y+ +VL
Sbjct: 988  DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVL 1047

Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
             RFNM  CKP STPL  +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068



 Score = 48.9 bits (115), Expect(5) = 1e-75
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606
           V TA +++N  P+ AID KTP E+W G+P  +S L VFG P Y   N +   +   K+R 
Sbjct: 614 VKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673

Query: 607 C 609
           C
Sbjct: 674 C 674



 Score = 23.5 bits (49), Expect(5) = 1e-75
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 23  KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
           +++ +L  IHSD+W   ++S    + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSF 506


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  141 bits (356), Expect(5) = 1e-75
 Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
            +GY D VKGY+LW  +  K + SRD+ F E+ + + +K       N + + E +    +E
Sbjct: 677  LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQK-------NDSTSKETAIVQMEE 729

Query: 779  KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
            K +E++   E++ V  E+    EP  +  G  +  RQT+KP    D      +  C+   
Sbjct: 730  KSKESD-SSEAEPVHEEQ----EPDDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784

Query: 941  XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
                      L    N       M   H+  + +   ++    ++    K IG +  W+ 
Sbjct: 785  EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838

Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
                K  GN    R   RA LV K +++KEGID+NEIF PV + ++I          DL 
Sbjct: 839  K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894

Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            L+QLDVK AFL+G+LEE IYM QPEGF   GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895  LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951



 Score = 87.4 bits (215), Expect(5) = 1e-75
 Identities = 48/100 (48%), Positives = 63/100 (63%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   +FI+D+SR++ V  +K K D F  FK  K  IE +  + IK LRTDNG E+   E 
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
             FC+  GI R  T  +T QQN VAERMN+TL+E+TR +L
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600



 Score = 72.8 bits (177), Expect(5) = 1e-75
 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
            DML+V  N  ++  LK  L +EFD+KDL    KIL M+I R+  +  + LS+K Y+ +VL
Sbjct: 988  DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047

Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
             RFNM  CKP STPL  +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068



 Score = 48.9 bits (115), Expect(5) = 1e-75
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606
           V TA +++N  P+ AID KTP E+W G+P  +S L VFG P Y   N +   +   K+R 
Sbjct: 614 VKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673

Query: 607 C 609
           C
Sbjct: 674 C 674



 Score = 24.3 bits (51), Expect(5) = 1e-75
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 23  KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
           +++ +L  IHSD+W   +LS    + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPELSLGGARYFVSF 506


>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
          Length = 1261

 Score =  127 bits (320), Expect(5) = 2e-75
 Identities = 101/295 (34%), Positives = 143/295 (48%), Gaps = 8/295 (2%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFV----EFLGNKNENVELSG- 763
            IGY D   GY+ W     K I SR++ F+E  +   R        E    K+E V L   
Sbjct: 631  IGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDEL 690

Query: 764  -ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXX 940
             E T +K  E + E+ +  VDL    +         +  R TR P+      N + +   
Sbjct: 691  TESTVQKGGEEDKENVNSQVDLSTPIVEVR------RSSRNTRPPQRYSPVLNYLLLTDG 744

Query: 941  XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMG--LSEKTIGEEGSWMQMG 1114
                    A        LQ  N+       +D + S   +    L+E  +G++    +  
Sbjct: 745  GEPECYDEA--------LQDENSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWV 796

Query: 1115 LQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQ 1294
             + +  +  S R   +A LV K F +KEGIDY EIF PV K S+I          +L L+
Sbjct: 797  YRIKNEHDGSKR--YKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLE 854

Query: 1295 QLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            QLDVK AFL+GDLEE +YM QPEGF+  G+E+ V +L+KSLYGLKQ+P+ WYK+F
Sbjct: 855  QLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKF 909



 Score = 83.2 bits (204), Expect(5) = 2e-75
 Identities = 45/99 (45%), Positives = 58/99 (58%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   TFIND SRKV V  LK K D F  FK+ K ++E +    +K LR+DNG E+     
Sbjct: 455 RYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 514

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRML 392
           +++C   GI    T   T QQN VAERMN+TL E+ R +
Sbjct: 515 SEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 553



 Score = 83.2 bits (204), Expect(5) = 2e-75
 Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
            DMLI  ++I KIN LKK L+K+F +KDL A K+IL M I+R+  N  + LS+  Y+++VL
Sbjct: 945  DMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 1004

Query: 1651 ERFNMYTCKPGSTPLAPHFKLLELQ 1725
             RFNM   KP STPL  HFKL + Q
Sbjct: 1005 XRFNMNEAKPVSTPLGSHFKLSKEQ 1029



 Score = 48.5 bits (114), Expect(5) = 2e-75
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHV-NEGNLESKAKNRV 606
           V TA++++N  P+  ++F+ P EVW G+   FS+L VFG  +Y H+ ++   +  AK+++
Sbjct: 568 VSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKI 627

Query: 607 C 609
           C
Sbjct: 628 C 628



 Score = 32.0 bits (71), Expect(5) = 2e-75
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 11  TGKHKTRRVLYYIHSDLWGPSKLSSKDGKSY 103
           TG+      L  +H+DLWGPS ++S  G  Y
Sbjct: 426 TGRTPKAEKLELVHTDLWGPSPVASLGGSRY 456


>emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]
          Length = 1246

 Score =  128 bits (321), Expect(5) = 4e-75
 Identities = 101/295 (34%), Positives = 143/295 (48%), Gaps = 8/295 (2%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFV----EFLGNKNENVELSG- 763
            IGY D   GY+ W     K I SR++ F+E  +   R        E    K+E V L   
Sbjct: 640  IGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDEL 699

Query: 764  -ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXX 940
             E T +K  E + E+ +  VDL    +         +  R TR P+      N + +   
Sbjct: 700  TESTVQKGGEEDKENVNSQVDLSTPVVEVR------RSSRNTRPPQRYSPVLNYLLLTDG 753

Query: 941  XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMG--LSEKTIGEEGSWMQMG 1114
                    A        LQ  N+       +D + S   +    L+E  +G++    +  
Sbjct: 754  GEPECYDEA--------LQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWV 805

Query: 1115 LQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQ 1294
             + +  +  S R   +A LV K F +KEGIDY EIF PV K S+I          +L L+
Sbjct: 806  YRIKNEHDGSKR--YKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLE 863

Query: 1295 QLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            QLDVK AFL+GDLEE +YM QPEGF+  G+E+ V +L+KSLYGLKQ+P+ WYK+F
Sbjct: 864  QLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKF 918



 Score = 83.2 bits (204), Expect(5) = 4e-75
 Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
            DMLI  ++I KIN LKK L+K+F +KDL A K+IL M I+R+  N  + LS+  Y+++VL
Sbjct: 954  DMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 1013

Query: 1651 ERFNMYTCKPGSTPLAPHFKLLELQ 1725
             RFNM   KP STPL  HFKL + Q
Sbjct: 1014 SRFNMNEAKPVSTPLGSHFKLSKEQ 1038



 Score = 81.6 bits (200), Expect(5) = 4e-75
 Identities = 44/99 (44%), Positives = 58/99 (58%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   TFI+D SRKV V  LK K D F  FK+ K ++E +    +K LR+DNG E+     
Sbjct: 464 RYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETETGLKVKCLRSDNGGEYIDGGF 523

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRML 392
           +++C   GI    T   T QQN VAERMN+TL E+ R +
Sbjct: 524 SEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 562



 Score = 48.5 bits (114), Expect(5) = 4e-75
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHV-NEGNLESKAKNRV 606
           V TA++++N  P+  ++F+ P EVW G+   FS+L VFG  +Y H+ ++   +  AK+++
Sbjct: 577 VSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKI 636

Query: 607 C 609
           C
Sbjct: 637 C 637



 Score = 32.0 bits (71), Expect(5) = 4e-75
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 11  TGKHKTRRVLYYIHSDLWGPSKLSSKDGKSY 103
           TG+      L  +H+DLWGPS ++S  G  Y
Sbjct: 435 TGRTPKAEKLELVHTDLWGPSPVASLGGSRY 465


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  140 bits (352), Expect(5) = 9e-75
 Identities = 106/297 (35%), Positives = 148/297 (49%), Gaps = 10/297 (3%)
 Frame = +2

Query: 599  IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
            +GY D VKGY+LW  +  K + SRD+ F E+ + + +K    F       +E   E +KE
Sbjct: 677  LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTFKETAILQIE---EKSKE 733

Query: 779  KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
             D       E++ V  E+    EP  +  G  +  RQT+KP    D      +  C+   
Sbjct: 734  SDSS-----EAESVHEEQ----EPDDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCLIAE 784

Query: 941  XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
                      L    N       M   H+  + +   ++    ++    K IG +  W+ 
Sbjct: 785  EGEPSTFHEAL----NGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNK--WVY 838

Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
                K  GN    R   RA LV K +++KEGID+NEIF PV + ++I          DL 
Sbjct: 839  K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894

Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
            L+QLDVK AFL+G+LEE IYM QPEGF   GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895  LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951



 Score = 87.8 bits (216), Expect(5) = 9e-75
 Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
 Frame = +3

Query: 96  RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
           R   +FI+D+SR++ V  +K K D F  FK  K  IE +  + IK LRTDNG E+   E 
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560

Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVF 419
             FC+  GI R  T  +T QQN VAERMN+TL+E+TR ML  A+M+  F
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSF 609



 Score = 71.2 bits (173), Expect(5) = 9e-75
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
            D+L+V  N  ++  LK  L +EFD+KDL    KIL M+I R+  +  + LS+K Y+ +VL
Sbjct: 988  DILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047

Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
             RFNM  CKP STPL  +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068



 Score = 47.4 bits (111), Expect(5) = 9e-75
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606
           V TA +++N  P+  ID KTP E+W G+P  +S L VFG P Y   N +   +   K+R 
Sbjct: 614 VKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673

Query: 607 C 609
           C
Sbjct: 674 C 674



 Score = 25.8 bits (55), Expect(5) = 9e-75
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 23  KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
           +++ +L  IHSD+W   KLS    + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPKLSLGGARYFVSF 506


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