BLASTX nr result
ID: Atropa21_contig00020394
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00020394
(1878 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 155 9e-97
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 151 4e-96
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 154 1e-95
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 155 1e-95
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 148 6e-95
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 160 8e-95
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 147 9e-94
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 147 1e-93
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 146 9e-93
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 156 3e-88
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 156 3e-88
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 142 5e-85
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 132 1e-84
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 137 3e-78
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 141 9e-76
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 141 1e-75
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 141 1e-75
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera] 127 2e-75
emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera] 128 4e-75
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 140 9e-75
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 155 bits (393), Expect(5) = 9e-97
Identities = 108/313 (34%), Positives = 162/313 (51%), Gaps = 26/313 (8%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
+GY GVKGYKLWC K + SR++ F ES +L+ + V VE + VE S
Sbjct: 892 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISS 951
Query: 761 GELTKEKDQETNVEDESKDVDLEELTINEP-YTIAKGKEERQTRKPECLIDQANCICVXX 937
G +++D N ++ + + P +IAK + +R + P+ I++AN +
Sbjct: 952 GHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIV---- 1007
Query: 938 XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099
A+ + + ++G + V+ D +++ +M EK +
Sbjct: 1008 ---------AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK----NHT 1054
Query: 1100 WMQMGLQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKH 1240
W + L KE+ G S +A L+AK +S+ GID+N++F PV KH
Sbjct: 1055 WELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKH 1114
Query: 1241 SSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLY 1420
SSI D EL+Q+DVK AFL+G+LEE IYM+QP+GF+ GKE+ V +LKKSLY
Sbjct: 1115 SSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLY 1174
Query: 1421 GLKQSPK*WYKRF 1459
GLKQSP+ WYKRF
Sbjct: 1175 GLKQSPRQWYKRF 1187
Score = 108 bits (269), Expect(5) = 9e-97
Identities = 54/100 (54%), Positives = 69/100 (69%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG+EFCS+
Sbjct: 719 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 778
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+C+ GI RH T +T QQN VAERMN+T+I K R LL
Sbjct: 779 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLL 818
Score = 83.2 bits (204), Expect(5) = 9e-97
Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNVVNL--SR 1626
IYL YVD MLI A + ++I LK L+ EF++KDL A KKIL MEI R+ + L S+
Sbjct: 1215 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQ 1274
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
K YIE+VL RFNM+ KP STPLA HF+L
Sbjct: 1275 KGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1303
Score = 57.8 bits (138), Expect(5) = 9e-97
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
V TA +++N P++AID KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 832 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 886
Score = 41.6 bits (96), Expect(5) = 9e-97
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T +L Y+HSDLWGP++ +S G Y+
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYM 721
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 151 bits (382), Expect(5) = 4e-96
Identities = 110/308 (35%), Positives = 156/308 (50%), Gaps = 19/308 (6%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVE-LSGEL 769
L +GY GVKGYKLW K SR++ F+E + N G +E + +S ++
Sbjct: 676 LFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQYVSVQV 735
Query: 770 TKEKDQETN-VEDESKDVDLEELTINEPY--TIAKGKEERQTRKPECLIDQANCICVXXX 940
DQET V ++ D ++ +P IA + +R P LI++ + +
Sbjct: 736 EHVDDQETEIVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMV----- 790
Query: 941 XXXXXXXXAFLVY*SNFLQGC--NTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMG 1114
++ N L+ V+ D +S+ + +M EK G+W +
Sbjct: 791 ----YYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEK----NGTWELVH 842
Query: 1115 LQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHX 1255
L K++ G S + LVAK FS+ G+DYN++F PV KHSSI
Sbjct: 843 LPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRT 902
Query: 1256 XXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQS 1435
DLEL+QLDVK FL+G+LEE IYMDQPEGF+ GKED+V +LK+SLYGLKQS
Sbjct: 903 FFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962
Query: 1436 PK*WYKRF 1459
P+ WYKRF
Sbjct: 963 PRQWYKRF 970
Score = 105 bits (261), Expect(5) = 4e-96
Identities = 59/119 (49%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D+SRK LK K D F AFKE K +IERQ E+ +K L TDNG EFCS+
Sbjct: 505 RYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAF 564
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
+D+C GI RH T T QQN VAERMN+T+I K R ML A+M+ F +++ Y
Sbjct: 565 DDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACY 623
Score = 94.4 bits (233), Expect(5) = 4e-96
Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSR 1626
IYL YVD MLI A + +I LKK L+ EFD+KDL A KKIL MEI R+ N ++ LS+
Sbjct: 998 IYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQ 1057
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
+ YI++VL+RFNM+ KP STP+APHFKL LQ
Sbjct: 1058 QSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQ 1090
Score = 50.8 bits (120), Expect(5) = 4e-96
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +1
Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
+TA +++N P+ ++ KTP E+W G P+ +S L VFG Y HV+ G LE +A
Sbjct: 619 NTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRA 672
Score = 42.7 bits (99), Expect(5) = 4e-96
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H+T+ +L Y+H+DLWGPS+ S G Y+
Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 154 bits (389), Expect(5) = 1e-95
Identities = 113/308 (36%), Positives = 155/308 (50%), Gaps = 19/308 (6%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVE-LSGEL 769
L +GY GVKGYKLW K SR + F+ES + N G +E + +S ++
Sbjct: 676 LFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYVSVQV 735
Query: 770 TKEKDQETN-VEDESKDVDLEELTINEPYT--IAKGKEERQTRKPECLIDQANCICVXXX 940
DQET V ++ D + +P IA + +R P LI++ + +
Sbjct: 736 EHVDDQETEIVGNDVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFS 795
Query: 941 XXXXXXXXAFLVY*SNFLQGCN--TMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMG 1114
N L+ V+ D +S+ + +M EK G+W +
Sbjct: 796 CAEQV---------ENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKN----GTWELVH 842
Query: 1115 LQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHX 1255
L K++ G S +A LVAK FS+ G+DYN++F PV KHSSI
Sbjct: 843 LPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRT 902
Query: 1256 XXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQS 1435
DLEL+QLDVK AFL+G+LEE IYMDQPEGF+ GKED+V +LK+SLYGLKQS
Sbjct: 903 FFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962
Query: 1436 PK*WYKRF 1459
P+ WYKRF
Sbjct: 963 PRQWYKRF 970
Score = 108 bits (269), Expect(5) = 1e-95
Identities = 60/119 (50%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D+SRKV LK K D F AFKE K +IERQ E+ +K LRTDN EFCS+
Sbjct: 505 RYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAF 564
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
+D+C GI RH T T QQN VAERMN+T+I K R ML A+M+ F +++ Y
Sbjct: 565 DDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACY 623
Score = 89.7 bits (221), Expect(5) = 1e-95
Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSR 1626
IYL YVD +LI A + +I LKK L+ EFD+KDL A KKIL MEI R+ N ++ LS+
Sbjct: 998 IYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQ 1057
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
+ YI++VL+ FNM+ KP STP+APHFKL LQ
Sbjct: 1058 QSYIKKVLQCFNMHDAKPVSTPIAPHFKLSALQ 1090
Score = 47.8 bits (112), Expect(5) = 1e-95
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
+TA +++N P+ ++ KTP E+W G P+ +S L VFG Y HV+ LE +A
Sbjct: 619 NTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRA 672
Score = 42.7 bits (99), Expect(5) = 1e-95
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H+T+ +L Y+H+DLWGPS+ S G Y+
Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 155 bits (392), Expect(5) = 1e-95
Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 26/313 (8%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
+GY GVKGYKLWC K + SR++ F ES IL+ + V VE + VE S
Sbjct: 657 LGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 716
Query: 761 GELTKEKDQETNVE-DESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
G +++D N + +D D + + +IAK K +R + P I++A +
Sbjct: 717 GHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIV---- 772
Query: 938 XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099
A+ + + ++G + V+ D +++ +M EK +
Sbjct: 773 ---------AYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK----NHT 819
Query: 1100 WMQMGLQKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKH 1240
W + L KE+ G S +A LVAK +S+ GID+N++F PV KH
Sbjct: 820 WELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKH 879
Query: 1241 SSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLY 1420
SSI D EL+Q++VK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLY
Sbjct: 880 SSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLY 939
Query: 1421 GLKQSPK*WYKRF 1459
GLKQSP+ WYKRF
Sbjct: 940 GLKQSPRQWYKRF 952
Score = 103 bits (258), Expect(5) = 1e-95
Identities = 52/100 (52%), Positives = 68/100 (68%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG+EFCS+
Sbjct: 484 RYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 543
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+C+ GI H T +T QQN VAERMN+T+I K R +L
Sbjct: 544 KSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCML 583
Score = 85.5 bits (210), Expect(5) = 1e-95
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNV--VNLSR 1626
IYL YVD MLI A + ++I LK L+ EF++KDL A KKIL MEI RE + + LS+
Sbjct: 980 IYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 1039
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
K YIE+VL RFNM+ KP STPLA HF+L
Sbjct: 1040 KGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1068
Score = 57.4 bits (137), Expect(5) = 1e-95
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
V TA +++N P +AID KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 597 VSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRA 651
Score = 40.4 bits (93), Expect(5) = 1e-95
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T +L Y+HSDLWGP+ +S G Y+
Sbjct: 453 FNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYM 486
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 148 bits (373), Expect(5) = 6e-95
Identities = 112/331 (33%), Positives = 157/331 (47%), Gaps = 42/331 (12%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSI----LNFRKVFVEFLGNKNENVELS 760
L +GY GVKGYKLW K SR + F+ES + L V + L + VE
Sbjct: 675 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHV 734
Query: 761 GELT--------KEKDQETNVEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPECL 904
+ T ++ D +V D+ D+++ L + E IA+ K +R T+ P+ L
Sbjct: 735 DDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRL 794
Query: 905 IDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGVS 1045
I++ N S + C N D + +S
Sbjct: 795 IEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWIS 834
Query: 1046 SQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKVF 1186
+ +M EK +W + L K++ G S +A LVA+ +
Sbjct: 835 AMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGY 890
Query: 1187 SRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEG 1366
S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPEG
Sbjct: 891 SQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEG 950
Query: 1367 FLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
F+ GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 951 FIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981
Score = 110 bits (274), Expect(5) = 6e-95
Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D+SRKV LK K D F AFK K +IERQ ER +K LRTDNG EFCS
Sbjct: 504 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y
Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622
Score = 89.4 bits (220), Expect(5) = 6e-95
Identities = 52/93 (55%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKILVMEI R+ + ++ LS+
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQ 1068
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
YI++VL+RFNM K STP+APHFKL Q
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101
Score = 51.2 bits (121), Expect(5) = 6e-95
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671
Score = 41.6 bits (96), Expect(5) = 6e-95
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T+ L Y+H+DLWGPSK S G Y+
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 160 bits (405), Expect(5) = 8e-95
Identities = 111/301 (36%), Positives = 160/301 (53%), Gaps = 14/301 (4%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
+GY+ GVKGYKLWC K + SR++ F ES +L+ + V VE + VE S
Sbjct: 594 LGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEHLISS 653
Query: 761 GELTKEKDQETNVE-DESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
G +++D N + +D D + + +IAK + +R T+ P I++AN +
Sbjct: 654 GHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYAL 713
Query: 938 XXXXXXXXXAFLVY*SNFL--QGCNT-MAVNHDGRDGVSSQES----DMGLSEKTIGEEG 1096
A S+ + CN + HD + + S + +K I
Sbjct: 714 SVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPI--RC 771
Query: 1097 SWMQMGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXX 1276
W+ +++ G S +A LVAK +S+ GID+N++F PV KHSSI
Sbjct: 772 KWI---FKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAM 828
Query: 1277 FDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKR 1456
D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP+ WYKR
Sbjct: 829 HDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 888
Query: 1457 F 1459
F
Sbjct: 889 F 889
Score = 105 bits (261), Expect(5) = 8e-95
Identities = 52/100 (52%), Positives = 68/100 (68%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG+E CS+
Sbjct: 421 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIF 480
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+C+ GI RH T +T QQN VAERMN+T+I K R +L
Sbjct: 481 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCML 520
Score = 76.6 bits (187), Expect(5) = 8e-95
Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + ++I LK L+ EF++KDL A KKIL MEI RE + + LS+
Sbjct: 917 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 976
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
K YIE+VL RFNM+ K ST LA HF+L
Sbjct: 977 KCYIEKVLHRFNMHDAKLVSTLLAAHFRL 1005
Score = 56.2 bits (134), Expect(5) = 8e-95
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESK 591
V TA +++N P++AID KTP EVW G P+ +S L VFG Y HV+ G LE +
Sbjct: 534 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPR 587
Score = 41.6 bits (96), Expect(5) = 8e-95
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T +L Y+HSDLWGP++ +S G Y+
Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 423
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 147 bits (370), Expect(5) = 9e-94
Identities = 109/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736
L +GY GVKGYKLW K SR + F+ES + +++ ++ + +
Sbjct: 675 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 733
Query: 737 KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901
+++ + E E+D N V D+ D+++ L + E IA+ K +R T+ P+
Sbjct: 734 VDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKR 793
Query: 902 LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042
LI++ N S + C N D + +
Sbjct: 794 LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 833
Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKV 1183
S+ +M EK +W + L K++ G S +A LVA+
Sbjct: 834 SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889
Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363
+S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPE
Sbjct: 890 YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949
Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
GF+ GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 950 GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981
Score = 110 bits (274), Expect(5) = 9e-94
Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D+SRKV LK K D F AFK K +IERQ ER +K LRTDNG EFCS
Sbjct: 504 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y
Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622
Score = 86.7 bits (213), Expect(5) = 9e-94
Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKIL MEI R+ + ++ LS+
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
YI++VL+RFNM K STP+APHFKL Q
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101
Score = 51.2 bits (121), Expect(5) = 9e-94
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 671
Score = 41.6 bits (96), Expect(5) = 9e-94
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T+ L Y+H+DLWGPSK S G Y+
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 147 bits (370), Expect(5) = 1e-93
Identities = 109/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736
L +GY GVKGYKLW K SR + F+ES + +++ ++ + +
Sbjct: 675 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 733
Query: 737 KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901
+++ + E E+D N V D+ D+++ L + E IA+ K +R T+ P+
Sbjct: 734 VDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKR 793
Query: 902 LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042
LI++ N S + C N D + +
Sbjct: 794 LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 833
Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKER-------------GNF*SGRC*VRA*LVAKV 1183
S+ +M EK +W + L K++ G S +A LVA+
Sbjct: 834 SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889
Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363
+S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPE
Sbjct: 890 YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949
Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
GF+ GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 950 GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 981
Score = 109 bits (273), Expect(5) = 1e-93
Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D+SRKV LK K D F AFK K +IERQ ER +K LRTDNG EFCS
Sbjct: 504 RYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAF 563
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y
Sbjct: 564 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 622
Score = 86.7 bits (213), Expect(5) = 1e-93
Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKIL MEI R+ + ++ LS+
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
YI++VL+RFNM K STP+APHFKL Q
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101
Score = 50.8 bits (120), Expect(5) = 1e-93
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 619 TACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRA 671
Score = 41.6 bits (96), Expect(5) = 1e-93
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T+ L Y+H+DLWGPSK S G Y+
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 506
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 146 bits (369), Expect(5) = 9e-93
Identities = 108/332 (32%), Positives = 160/332 (48%), Gaps = 43/332 (12%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN------------FRKVFVEFLGN 736
L +GY GVKGYKLW K SR + F+ES + +++ ++ + +
Sbjct: 677 LFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQ-VEH 735
Query: 737 KNENVELSGELTKEKDQETN-VEDESKDVDLEE----LTINEPYTIAKGKEERQTRKPEC 901
+++ + E E+D N V D+ D+++ L + E +IA+ K +R T+ P+
Sbjct: 736 VDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKR 795
Query: 902 LIDQANCICVXXXXXXXXXXXAFLVY*SNFLQGCNTMAVN-------------HDGRDGV 1042
LI++ N S + C N D + +
Sbjct: 796 LIEECNL--------------------SYYALSCAEQVENVHEPATYKEAVRCGDSENWI 835
Query: 1043 SSQESDMGLSEKTIGEEGSWMQMGLQKERGNF*-------------SGRC*VRA*LVAKV 1183
S+ +M EK +W + L K++ S +A LVA+
Sbjct: 836 SAMHEEMQSLEKN----STWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARG 891
Query: 1184 FSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPE 1363
+S+ G+DYN++F PV KHSSI DLEL+QLDVK AFL+G+LEE IYMDQPE
Sbjct: 892 YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 951
Query: 1364 GFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
GF+ GKE +V +LK+SLYGLKQSP+ W KRF
Sbjct: 952 GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRF 983
Score = 107 bits (266), Expect(5) = 9e-93
Identities = 60/119 (50%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D+SRKV LK K D F AFK K +IERQ ER +K L TDNG EFCS
Sbjct: 506 RYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAF 565
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
ND+C GI RH T +T QQN VAERMN+T+I + R ML A+M+ F ++ Y
Sbjct: 566 NDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACY 624
Score = 86.7 bits (213), Expect(5) = 9e-93
Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + +I LKKLL+ EFD+KDL + KKIL MEI R+ + ++ LS+
Sbjct: 1011 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1070
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
YI++VL+RFNM K STP+APHFKL Q
Sbjct: 1071 HNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1103
Score = 51.2 bits (121), Expect(5) = 9e-93
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
TA +++N P+ ++ KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 621 TACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 673
Score = 41.6 bits (96), Expect(5) = 9e-93
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T+ L Y+H+DLWGPSK S G Y+
Sbjct: 475 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYM 508
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 156 bits (394), Expect(5) = 3e-88
Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 20/307 (6%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE--LSG 763
+GY GVKGYKLWC K + SR++ F ES IL+ + V VE + VE +S
Sbjct: 720 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 779
Query: 764 ELTKEKDQETNVEDES--KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
EK+ +D +D D + + +IAK K +R + P I++AN +
Sbjct: 780 GHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839
Query: 938 XXXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117
A S + V+ D +++ +M +++ + +W + L
Sbjct: 840 SVAEEIEGNAEPSTYSEAI-------VSDDCNRWITAMHDEM----ESLKKNHTWEFVKL 888
Query: 1118 QKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXX 1258
KE+ G S +A LVAK +S+ GID+N++F P+ KHSSI
Sbjct: 889 PKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948
Query: 1259 XXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSP 1438
D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP
Sbjct: 949 LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008
Query: 1439 K*WYKRF 1459
+ WYKRF
Sbjct: 1009 RQWYKRF 1015
Score = 101 bits (251), Expect(5) = 3e-88
Identities = 50/100 (50%), Positives = 66/100 (66%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T ++D+SRKV LK K AF+ FKE K ++ERQ E+ +K LRTDNG+EFCS+
Sbjct: 547 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+C+ GI H T +T QQN VAERMN +I K R +L
Sbjct: 607 KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646
Score = 66.6 bits (161), Expect(5) = 3e-88
Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + ++I LK L+ EF +KDL A KKIL MEI RE + + LS+
Sbjct: 1043 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQ 1102
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAP 1701
K YI++VL RFNM+ KP L P
Sbjct: 1103 KGYIKKVLRRFNMHDVKPIIFRLCP 1127
Score = 54.3 bits (129), Expect(5) = 3e-88
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
V T +++N P++A D KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 714
Score = 39.7 bits (91), Expect(5) = 3e-88
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T +L Y+HSDLWGP+ +S G Y+
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 156 bits (394), Expect(5) = 3e-88
Identities = 110/307 (35%), Positives = 158/307 (51%), Gaps = 20/307 (6%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE--LSG 763
+GY GVKGYKLWC K + SR++ F ES IL+ + V VE + VE +S
Sbjct: 720 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISS 779
Query: 764 ELTKEKDQETNVEDES--KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
EK+ +D +D D + + +IAK K +R + P I++AN +
Sbjct: 780 GHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839
Query: 938 XXXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117
A S + V+ D +++ +M +++ + +W + L
Sbjct: 840 SVAEEIEGNAEPSTYSEAI-------VSDDCNRWITAMHDEM----ESLKKNHTWEFVKL 888
Query: 1118 QKER-------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXX 1258
KE+ G S +A LVAK +S+ GID+N++F P+ KHSSI
Sbjct: 889 PKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948
Query: 1259 XXXXXXFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSP 1438
D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP
Sbjct: 949 LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008
Query: 1439 K*WYKRF 1459
+ WYKRF
Sbjct: 1009 RQWYKRF 1015
Score = 101 bits (251), Expect(5) = 3e-88
Identities = 50/100 (50%), Positives = 66/100 (66%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T ++D+SRKV LK K AF+ FKE K ++ERQ E+ +K LRTDNG+EFCS+
Sbjct: 547 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+C+ GI H T +T QQN VAERMN +I K R +L
Sbjct: 607 KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646
Score = 66.2 bits (160), Expect(5) = 3e-88
Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSR 1626
IYL YVD MLI A + ++I LK L+ EF +KDL A KKIL MEI RE + + LS+
Sbjct: 1043 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQ 1102
Query: 1627 KRYIERVLERFNMYTCKP 1680
K YI++VL RFNM+ KP
Sbjct: 1103 KGYIKKVLRRFNMHDVKP 1120
Score = 54.3 bits (129), Expect(5) = 3e-88
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
V T +++N P++A D KTP EVW G P+ +S L VFG Y HV+ G LE +A
Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRA 714
Score = 39.7 bits (91), Expect(5) = 3e-88
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T +L Y+HSDLWGP+ +S G Y+
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 142 bits (358), Expect(5) = 5e-85
Identities = 96/294 (32%), Positives = 153/294 (52%), Gaps = 7/294 (2%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILN--FRKVFVEFLGNKNENVE---LSG 763
+GY DGVKG+++W + + I SR++ FDES +L + G+ ++ VE +
Sbjct: 663 VGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQN 722
Query: 764 ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXXX 943
E ++ +E + E +++ E + + +IA+ + R +P + +
Sbjct: 723 ESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQV 782
Query: 944 XXXXXXXAFLVY*SNFLQGCNT--MAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGL 1117
Y L + A D + + ++ L + G + +
Sbjct: 783 AEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQT-WDLVIQPSGRKIITCKWVF 841
Query: 1118 QKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQQ 1297
+K+ G + +A +VA+ F+++EG+DYNEIF PV +H+SI +LEL+Q
Sbjct: 842 KKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQ 901
Query: 1298 LDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
LDVK AFL+G+LEE IYM QP+GF GKE+HV +LKKSLYGLKQSP+ WYKRF
Sbjct: 902 LDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRF 955
Score = 108 bits (269), Expect(5) = 5e-85
Identities = 54/100 (54%), Positives = 70/100 (70%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + I+D+SR V ++K K +AF+ FKE K L+E Q + IK LRTDNGLEFC E
Sbjct: 490 RFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEF 549
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+ FC+ GI+RH T RNT QQN VAERMN+TL+E+ R +L
Sbjct: 550 DQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCML 589
Score = 67.4 bits (163), Expect(5) = 5e-85
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Frame = +1
Query: 1456 IYLR*YVD-MLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEIL--RENNVVNLSR 1626
IYL YVD MLI A I LK LL+ EF++KDL A +KIL MEI+ RE + LS+
Sbjct: 984 IYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQ 1043
Query: 1627 KRYIERVLERFNMYTCKPGSTPLAPHFKL 1713
+ YI++VL RF M + KP TP A + L
Sbjct: 1044 RSYIQKVLARFGMSSSKPIDTPSAANIHL 1072
Score = 54.3 bits (129), Expect(5) = 5e-85
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKAKNRV 606
V TA +++N P I KTP E+W G+ + +S L FG YYHV+EG LE +AK V
Sbjct: 603 VSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGV 661
Score = 34.7 bits (78), Expect(5) = 5e-85
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDG 94
F H+T+ L YIHSD WGP ++ S G
Sbjct: 459 FPKAIHRTKGTLDYIHSDCWGPCRVESLGG 488
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 132 bits (332), Expect(5) = 1e-84
Identities = 107/302 (35%), Positives = 139/302 (46%), Gaps = 13/302 (4%)
Frame = +2
Query: 593 LRIGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELT 772
L +GY GVKGYKLW K SR + F NE+V + L
Sbjct: 413 LFLGYGSGVKGYKLWNPETNKTFMSRSVIF-------------------NESVMFNDSLP 453
Query: 773 KEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXXXXXX 952
T+ +DE IA + +R P LI++ + +
Sbjct: 454 ------TDPQDEP---------------IAHRRTKRSCGAPVRLIEECDMV--------- 483
Query: 953 XXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGSWMQMGLQKER- 1129
AF S Q NT+ V+ QE L + G+W + L K++
Sbjct: 484 --YYAF----SCAEQVKNTLEPATYTEAVVAMQEEMQSLEKN-----GTWELVHLPKQKK 532
Query: 1130 ------------GNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXX 1273
G S +A LVAK FS+ G+DYN++F PV KHSSI
Sbjct: 533 PVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVA 592
Query: 1274 XFDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYK 1453
DLEL+QLDVK AFL+G+LEE IYMDQPEGF+ GKE +V +LK+S YGLKQSP+ WYK
Sbjct: 593 MHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLKQSPRQWYK 652
Query: 1454 RF 1459
RF
Sbjct: 653 RF 654
Score = 102 bits (254), Expect(5) = 1e-84
Identities = 59/119 (49%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T I+D SRKV LK K D F AFKE K +IERQ E+ +K LRTDNG EFCS+
Sbjct: 242 RYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNGGEFCSDAF 301
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVFGLNSSHCFSY 449
+D+ GI RH T T QQN VAERMN+T+I K ML A+M+ F +++ Y
Sbjct: 302 DDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACY 360
Score = 85.9 bits (211), Expect(5) = 1e-84
Identities = 50/92 (54%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Frame = +1
Query: 1456 IYLR*YVDMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENN--VVNLSRK 1629
IYL DMLI A + +I LKK L+ EFD+KDL A KKIL MEI R+ N ++ LS++
Sbjct: 682 IYLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQ 741
Query: 1630 RYIERVLERFNMYTCKPGSTPLAPHFKLLELQ 1725
YI+ VL+RFNM+ K S P+APHFKL LQ
Sbjct: 742 SYIKNVLQRFNMHDAKLVSIPIAPHFKLSVLQ 773
Score = 48.1 bits (113), Expect(5) = 1e-84
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +1
Query: 433 HTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
+TA +++N P+ ++ KTP EVW G + +S L VFG Y HV+ G LE +A
Sbjct: 356 NTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAHVDNGKLEPRA 409
Score = 37.0 bits (84), Expect(5) = 1e-84
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+ H+ + +L Y+H+DLWGPS S G Y+
Sbjct: 211 FNISVHRIKGILDYVHADLWGPSHKPSLGGARYM 244
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 137 bits (344), Expect(5) = 3e-78
Identities = 104/301 (34%), Positives = 155/301 (51%), Gaps = 14/301 (4%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFR---KVFVEFLGNKNENVE---LS 760
+GY GVKGYKLWC K + SR++ F ES +L+ + V VE + VE S
Sbjct: 646 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISS 705
Query: 761 GELTKEKDQETNVEDES-KDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXX 937
G ++++ N++ +D D + + ++IAK K +R + P I++AN +
Sbjct: 706 GHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIV---- 761
Query: 938 XXXXXXXXXAFLVY*SNFLQG------CNTMAVNHDGRDGVSSQESDMGLSEKTIGEEGS 1099
A+ + + ++G + V+ D +++ +M EK +
Sbjct: 762 ---------AYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKN----HT 808
Query: 1100 WMQMGLQKERGNF*SGRC*VRA*LVAKVFSRKEGID-YNEIFYPVAKHSSIHXXXXXXXX 1276
W + L KE+ RC +F RKEG+ +E Y K SSI
Sbjct: 809 WELVKLPKEKKPI---RC-------KWIFKRKEGMSPSDEARY---KASSIRTLLSIVAM 855
Query: 1277 FDLELQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKR 1456
+D EL+Q+DVK AFL+G+LEE IYM+QPEGF+ GKE+ V +LKKSLYGLKQSP+ WYKR
Sbjct: 856 YDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 915
Query: 1457 F 1459
F
Sbjct: 916 F 916
Score = 106 bits (264), Expect(5) = 3e-78
Identities = 52/100 (52%), Positives = 69/100 (69%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R + T ++D+SRKV LK K AF+ FKE K ++ERQ ER +K LRTDNG++FCS+
Sbjct: 473 RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIF 532
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
+C+ GI RH T +T QQN VAERMN+T+I K R +L
Sbjct: 533 KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCML 572
Score = 53.1 bits (126), Expect(5) = 3e-78
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVNEGNLESKA 594
V TA +++N P++AID KTP +VW G P+ +S L VFG Y HV+ LE +A
Sbjct: 586 VSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRA 640
Score = 46.2 bits (108), Expect(5) = 3e-78
Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 1456 IYLR*YV-DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE 1602
IYL YV DMLI A + +I LK L+ EF++KDL A KKIL MEI RE
Sbjct: 944 IYLLLYVNDMLIAAKDKLEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 993
Score = 41.6 bits (96), Expect(5) = 3e-78
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 5 FSTGKHKTRRVLYYIHSDLWGPSKLSSKDGKSYL 106
F+T H T +L Y+HSDLWGP++ +S G Y+
Sbjct: 442 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 475
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 141 bits (356), Expect(5) = 9e-76
Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
+GY D VKGY+LW + K + SRD+ F E+ + + +K N + + E + +E
Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQK-------NDSTSKETAIVQMEE 729
Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
K +E++ E++ V E+ EP + G + RQT+KP D + C+
Sbjct: 730 KSKESD-SSEAESVHEEQ----EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784
Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
L N M H+ + + ++ ++ K IG + W+
Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838
Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
K GN R RA LV K +++KEGID+NEIF PV + ++I DL
Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894
Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951
Score = 90.1 bits (222), Expect(5) = 9e-76
Identities = 49/100 (49%), Positives = 64/100 (64%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R +FI+D+SR++ V +K K D F FK K IE + E+ IK LRTDNG E+ E
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEF 560
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
FC+ GI R T +T QQN VAERMN+TL+E+TR +L
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600
Score = 72.8 bits (177), Expect(5) = 9e-76
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +1
Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
DML+V N ++ LK L +EFD+KDL KIL M+I R+ + + LS+K Y+ +VL
Sbjct: 988 DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047
Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
RFNM CKP STPL +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068
Score = 47.8 bits (112), Expect(5) = 9e-76
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 436 TASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRVC 609
TA +++N P+ AID KTP E+W G+P +S L VFG P Y N + + K+R C
Sbjct: 616 TACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKC 674
Score = 23.5 bits (49), Expect(5) = 9e-76
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
+++ +L IHSD+W ++S + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSF 506
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 141 bits (356), Expect(5) = 1e-75
Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
+GY D VKGY+LW + K + SRD+ F E+ + + +K N + + E + +E
Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQK-------NDSTSKETAIVQMEE 729
Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
K +E++ E++ V E+ EP + G + RQT+KP D + C+
Sbjct: 730 KSKESD-SSEAESVHEEQ----EPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784
Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
L N M H+ + + ++ ++ K IG + W+
Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838
Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
K GN R RA LV K +++KEGID+NEIF PV + ++I DL
Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894
Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951
Score = 88.2 bits (217), Expect(5) = 1e-75
Identities = 48/100 (48%), Positives = 63/100 (63%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R +FI+D+SR++ V +K K D F FK K IE + + IK LRTDNG E+ E
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEF 560
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
FC+ GI R T +T QQN VAERMN+TL+E+TR +L
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600
Score = 72.8 bits (177), Expect(5) = 1e-75
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +1
Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRENNVVN--LSRKRYIERVL 1650
DML+V N ++ LK L +EFD+KDL KIL M+I R+ + LS+K Y+ +VL
Sbjct: 988 DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVL 1047
Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
RFNM CKP STPL +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068
Score = 48.9 bits (115), Expect(5) = 1e-75
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606
V TA +++N P+ AID KTP E+W G+P +S L VFG P Y N + + K+R
Sbjct: 614 VKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673
Query: 607 C 609
C
Sbjct: 674 C 674
Score = 23.5 bits (49), Expect(5) = 1e-75
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
+++ +L IHSD+W ++S + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPEISLGGARYFVSF 506
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 141 bits (356), Expect(5) = 1e-75
Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 10/297 (3%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
+GY D VKGY+LW + K + SRD+ F E+ + + +K N + + E + +E
Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQK-------NDSTSKETAIVQMEE 729
Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
K +E++ E++ V E+ EP + G + RQT+KP D + C+
Sbjct: 730 KSKESD-SSEAEPVHEEQ----EPDDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCLITE 784
Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
L N M H+ + + ++ ++ K IG + W+
Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK--WVY 838
Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
K GN R RA LV K +++KEGID+NEIF PV + ++I DL
Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894
Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951
Score = 87.4 bits (215), Expect(5) = 1e-75
Identities = 48/100 (48%), Positives = 63/100 (63%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R +FI+D+SR++ V +K K D F FK K IE + + IK LRTDNG E+ E
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRMLL 395
FC+ GI R T +T QQN VAERMN+TL+E+TR +L
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAML 600
Score = 72.8 bits (177), Expect(5) = 1e-75
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +1
Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
DML+V N ++ LK L +EFD+KDL KIL M+I R+ + + LS+K Y+ +VL
Sbjct: 988 DMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047
Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
RFNM CKP STPL +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068
Score = 48.9 bits (115), Expect(5) = 1e-75
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606
V TA +++N P+ AID KTP E+W G+P +S L VFG P Y N + + K+R
Sbjct: 614 VKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673
Query: 607 C 609
C
Sbjct: 674 C 674
Score = 24.3 bits (51), Expect(5) = 1e-75
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
+++ +L IHSD+W +LS + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPELSLGGARYFVSF 506
>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
Length = 1261
Score = 127 bits (320), Expect(5) = 2e-75
Identities = 101/295 (34%), Positives = 143/295 (48%), Gaps = 8/295 (2%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFV----EFLGNKNENVELSG- 763
IGY D GY+ W K I SR++ F+E + R E K+E V L
Sbjct: 631 IGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDEL 690
Query: 764 -ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXX 940
E T +K E + E+ + VDL + + R TR P+ N + +
Sbjct: 691 TESTVQKGGEEDKENVNSQVDLSTPIVEVR------RSSRNTRPPQRYSPVLNYLLLTDG 744
Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMG--LSEKTIGEEGSWMQMG 1114
A LQ N+ +D + S + L+E +G++ +
Sbjct: 745 GEPECYDEA--------LQDENSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWV 796
Query: 1115 LQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQ 1294
+ + + S R +A LV K F +KEGIDY EIF PV K S+I +L L+
Sbjct: 797 YRIKNEHDGSKR--YKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLE 854
Query: 1295 QLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
QLDVK AFL+GDLEE +YM QPEGF+ G+E+ V +L+KSLYGLKQ+P+ WYK+F
Sbjct: 855 QLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKF 909
Score = 83.2 bits (204), Expect(5) = 2e-75
Identities = 45/99 (45%), Positives = 58/99 (58%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R TFIND SRKV V LK K D F FK+ K ++E + +K LR+DNG E+
Sbjct: 455 RYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGF 514
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRML 392
+++C GI T T QQN VAERMN+TL E+ R +
Sbjct: 515 SEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 553
Score = 83.2 bits (204), Expect(5) = 2e-75
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
DMLI ++I KIN LKK L+K+F +KDL A K+IL M I+R+ N + LS+ Y+++VL
Sbjct: 945 DMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 1004
Query: 1651 ERFNMYTCKPGSTPLAPHFKLLELQ 1725
RFNM KP STPL HFKL + Q
Sbjct: 1005 XRFNMNEAKPVSTPLGSHFKLSKEQ 1029
Score = 48.5 bits (114), Expect(5) = 2e-75
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHV-NEGNLESKAKNRV 606
V TA++++N P+ ++F+ P EVW G+ FS+L VFG +Y H+ ++ + AK+++
Sbjct: 568 VSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKI 627
Query: 607 C 609
C
Sbjct: 628 C 628
Score = 32.0 bits (71), Expect(5) = 2e-75
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 11 TGKHKTRRVLYYIHSDLWGPSKLSSKDGKSY 103
TG+ L +H+DLWGPS ++S G Y
Sbjct: 426 TGRTPKAEKLELVHTDLWGPSPVASLGGSRY 456
>emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]
Length = 1246
Score = 128 bits (321), Expect(5) = 4e-75
Identities = 101/295 (34%), Positives = 143/295 (48%), Gaps = 8/295 (2%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFV----EFLGNKNENVELSG- 763
IGY D GY+ W K I SR++ F+E + R E K+E V L
Sbjct: 640 IGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDEL 699
Query: 764 -ELTKEKDQETNVEDESKDVDLEELTINEPYTIAKGKEERQTRKPECLIDQANCICVXXX 940
E T +K E + E+ + VDL + + R TR P+ N + +
Sbjct: 700 TESTVQKGGEEDKENVNSQVDLSTPVVEVR------RSSRNTRPPQRYSPVLNYLLLTDG 753
Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQESDMG--LSEKTIGEEGSWMQMG 1114
A LQ N+ +D + S + L+E +G++ +
Sbjct: 754 GEPECYDEA--------LQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWV 805
Query: 1115 LQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLELQ 1294
+ + + S R +A LV K F +KEGIDY EIF PV K S+I +L L+
Sbjct: 806 YRIKNEHDGSKR--YKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLE 863
Query: 1295 QLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
QLDVK AFL+GDLEE +YM QPEGF+ G+E+ V +L+KSLYGLKQ+P+ WYK+F
Sbjct: 864 QLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKF 918
Score = 83.2 bits (204), Expect(5) = 4e-75
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
DMLI ++I KIN LKK L+K+F +KDL A K+IL M I+R+ N + LS+ Y+++VL
Sbjct: 954 DMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 1013
Query: 1651 ERFNMYTCKPGSTPLAPHFKLLELQ 1725
RFNM KP STPL HFKL + Q
Sbjct: 1014 SRFNMNEAKPVSTPLGSHFKLSKEQ 1038
Score = 81.6 bits (200), Expect(5) = 4e-75
Identities = 44/99 (44%), Positives = 58/99 (58%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R TFI+D SRKV V LK K D F FK+ K ++E + +K LR+DNG E+
Sbjct: 464 RYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETETGLKVKCLRSDNGGEYIDGGF 523
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTRML 392
+++C GI T T QQN VAERMN+TL E+ R +
Sbjct: 524 SEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSM 562
Score = 48.5 bits (114), Expect(5) = 4e-75
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHV-NEGNLESKAKNRV 606
V TA++++N P+ ++F+ P EVW G+ FS+L VFG +Y H+ ++ + AK+++
Sbjct: 577 VSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKI 636
Query: 607 C 609
C
Sbjct: 637 C 637
Score = 32.0 bits (71), Expect(5) = 4e-75
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 11 TGKHKTRRVLYYIHSDLWGPSKLSSKDGKSY 103
TG+ L +H+DLWGPS ++S G Y
Sbjct: 435 TGRTPKAEKLELVHTDLWGPSPVASLGGSRY 465
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 140 bits (352), Expect(5) = 9e-75
Identities = 106/297 (35%), Positives = 148/297 (49%), Gaps = 10/297 (3%)
Frame = +2
Query: 599 IGYVDGVKGYKLWCLSLLKFIASRDITFDESSILNFRKVFVEFLGNKNENVELSGELTKE 778
+GY D VKGY+LW + K + SRD+ F E+ + + +K F +E E +KE
Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTFKETAILQIE---EKSKE 733
Query: 779 KDQETNVEDESKDVDLEELTINEPYTIAKG--KEERQTRKPECLIDQA----NCICVXXX 940
D E++ V E+ EP + G + RQT+KP D + C+
Sbjct: 734 SDSS-----EAESVHEEQ----EPDDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCLIAE 784
Query: 941 XXXXXXXXAFLVY*SNFLQGCNTMAVNHDGRDGVSSQES----DMGLSEKTIGEEGSWMQ 1108
L N M H+ + + ++ ++ K IG + W+
Sbjct: 785 EGEPSTFHEAL----NGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNK--WVY 838
Query: 1109 MGLQKERGNF*SGRC*VRA*LVAKVFSRKEGIDYNEIFYPVAKHSSIHXXXXXXXXFDLE 1288
K GN R RA LV K +++KEGID+NEIF PV + ++I DL
Sbjct: 839 K--IKRDGNDQVER--YRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLH 894
Query: 1289 LQQLDVKIAFLYGDLEETIYMDQPEGFLADGKEDHVYQLKKSLYGLKQSPK*WYKRF 1459
L+QLDVK AFL+G+LEE IYM QPEGF GKE+ V +L KSLYGLKQ+P+ WYKRF
Sbjct: 895 LEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRF 951
Score = 87.8 bits (216), Expect(5) = 9e-75
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Frame = +3
Query: 96 RVIFTFINDFSRKV*VCLLKAKCDAFEAFKE*KFLIERQMERTIKYLRTDNGLEFCSEEL 275
R +FI+D+SR++ V +K K D F FK K IE + + IK LRTDNG E+ E
Sbjct: 501 RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560
Query: 276 NDFCEVHGISRHGTFRNTSQQNVVAERMNKTLIEKTR-MLL*AKMSNVF 419
FC+ GI R T +T QQN VAERMN+TL+E+TR ML A+M+ F
Sbjct: 561 LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSF 609
Score = 71.2 bits (173), Expect(5) = 9e-75
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +1
Query: 1477 DMLIVANNITKINALKKLLNKEFDVKDL*ATKKILVMEILRE--NNVVNLSRKRYIERVL 1650
D+L+V N ++ LK L +EFD+KDL KIL M+I R+ + + LS+K Y+ +VL
Sbjct: 988 DILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVL 1047
Query: 1651 ERFNMYTCKPGSTPLAPHFKL 1713
RFNM CKP STPL +FKL
Sbjct: 1048 RRFNMQDCKPISTPLPVNFKL 1068
Score = 47.4 bits (111), Expect(5) = 9e-75
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 VHTASHIVN*YPAFAIDFKTPNEVWLGEPSIFSYL*VFGFPTYYHVN-EGNLESKAKNRV 606
V TA +++N P+ ID KTP E+W G+P +S L VFG P Y N + + K+R
Sbjct: 614 VKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673
Query: 607 C 609
C
Sbjct: 674 C 674
Score = 25.8 bits (55), Expect(5) = 9e-75
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 23 KTRRVLYYIHSDLWGPSKLSSKDGKSYLHF 112
+++ +L IHSD+W KLS + ++ F
Sbjct: 477 RSKHILDLIHSDVWESPKLSLGGARYFVSF 506