BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00018962
         (2034 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   162   2e-94
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    162   2e-94
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]   169   3e-93
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]                    150   1e-89
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]   160   9e-89
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  164   2e-88
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]              147   1e-86
gb|AAB82754.1| retrofit [Oryza longistaminata]                        165   1e-86
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   170   2e-86
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   161   3e-86
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   162   3e-86
emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]   165   4e-85
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   163   4e-85
ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846...   155   4e-85
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   161   5e-85
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   165   1e-84
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   151   1e-84
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia...   158   4e-84
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  165   6e-84
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   159   6e-84

>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
            gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  162 bits (411), Expect(4) = 2e-94
 Identities = 81/157 (51%), Positives = 103/157 (65%)
 Frame = +2

Query: 431  VVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAIAAQ 610
            +V C+ +F  K+    S++RYK R +AK + QRPGLDY  TFS V+K T +R+VL +A  
Sbjct: 997  IVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1056

Query: 611  CSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTWYT* 790
             SWPI  LDVNN FLQG+L + VYM  PP F       Y CKL+KA+YGL QA R WY  
Sbjct: 1057 RSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVE 1116

Query: 791  LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            L N  ++IG V S SD+SLF+L      VY+L+YVDD
Sbjct: 1117 LRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDD 1153



 Score =  139 bits (350), Expect(4) = 2e-94
 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%)
 Frame = +3

Query: 987  LHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDLAVYV 1166
            LHYFLG+E    PT ++LSQ +Y +DLL   +M   K V+TPM  +              
Sbjct: 1183 LHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDP 1242

Query: 1167 SLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHIGSPSK- 1343
            + YR I+G LQYL+FTRPDI +AV++LS FMH P   H +A +R+LRYL     G+P+  
Sbjct: 1243 TEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYL----AGTPNHG 1298

Query: 1344 --LTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTEVEY 1511
              L    + +       DW   +++  +  G + +   + + +  +K+K + RSSTE EY
Sbjct: 1299 IFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY 1358

Query: 1512 RVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            R V    SE+              + PP + CDNV  TY+C  PVF
Sbjct: 1359 RSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVF 1404



 Score = 75.5 bits (184), Expect(4) = 2e-94
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLVTF 1825
            FHSRMKH+AI++HFIR QVQ  AL V H+ + DQ+AD LTKPLSRTAF     K+ +   
Sbjct: 1404 FHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

Query: 1826 TPN 1834
             P+
Sbjct: 1464 PPS 1466



 Score = 40.8 bits (94), Expect(4) = 2e-94
 Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
 Frame = +3

Query: 45   SPTQSALILLPPTTTSKPHIT*TYSRRTNKVTASV*APPRTTKSLPPHLNDLPPQ*KSAT 224
            SP+Q A  L  P  +S    + T S  ++  + +   PP      PP L  +      A 
Sbjct: 867  SPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPT---PPSILIHPPPPLAQIVNNNNQAP 923

Query: 225  LS-HLMIT***TNSLKP--KNFLAKINFAPLIPRSYRQAQLYPQW*EAMKAEYDALVRN* 395
            L+ H M T      +KP  K  LA    A   PR+  QA    +W  AM +E +A + N 
Sbjct: 924  LNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNH 983

Query: 396  TWDLVP-----VISLGMLWI 440
            TWDLVP     V  +G  WI
Sbjct: 984  TWDLVPPPPSHVTIVGCRWI 1003


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  162 bits (411), Expect(4) = 2e-94
 Identities = 81/157 (51%), Positives = 103/157 (65%)
 Frame = +2

Query: 431  VVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAIAAQ 610
            +V C+ +F  K+    S++RYK R +AK + QRPGLDY  TFS V+K T +R+VL +A  
Sbjct: 962  IVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1021

Query: 611  CSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTWYT* 790
             SWPI  LDVNN FLQG+L + VYM  PP F       Y CKL+KA+YGL QA R WY  
Sbjct: 1022 RSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVE 1081

Query: 791  LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            L N  ++IG V S SD+SLF+L      VY+L+YVDD
Sbjct: 1082 LRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDD 1118



 Score =  139 bits (350), Expect(4) = 2e-94
 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%)
 Frame = +3

Query: 987  LHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDLAVYV 1166
            LHYFLG+E    PT ++LSQ +Y +DLL   +M   K V+TPM  +              
Sbjct: 1148 LHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDP 1207

Query: 1167 SLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHIGSPSK- 1343
            + YR I+G LQYL+FTRPDI +AV++LS FMH P   H +A +R+LRYL     G+P+  
Sbjct: 1208 TEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYL----AGTPNHG 1263

Query: 1344 --LTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTEVEY 1511
              L    + +       DW   +++  +  G + +   + + +  +K+K + RSSTE EY
Sbjct: 1264 IFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY 1323

Query: 1512 RVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            R V    SE+              + PP + CDNV  TY+C  PVF
Sbjct: 1324 RSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVF 1369



 Score = 75.5 bits (184), Expect(4) = 2e-94
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLVTF 1825
            FHSRMKH+AI++HFIR QVQ  AL V H+ + DQ+AD LTKPLSRTAF     K+ +   
Sbjct: 1369 FHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1428

Query: 1826 TPN 1834
             P+
Sbjct: 1429 PPS 1431



 Score = 40.8 bits (94), Expect(4) = 2e-94
 Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
 Frame = +3

Query: 45   SPTQSALILLPPTTTSKPHIT*TYSRRTNKVTASV*APPRTTKSLPPHLNDLPPQ*KSAT 224
            SP+Q A  L  P  +S    + T S  ++  + +   PP      PP L  +      A 
Sbjct: 832  SPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPT---PPSILIHPPPPLAQIVNNNNQAP 888

Query: 225  LS-HLMIT***TNSLKP--KNFLAKINFAPLIPRSYRQAQLYPQW*EAMKAEYDALVRN* 395
            L+ H M T      +KP  K  LA    A   PR+  QA    +W  AM +E +A + N 
Sbjct: 889  LNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNH 948

Query: 396  TWDLVP-----VISLGMLWI 440
            TWDLVP     V  +G  WI
Sbjct: 949  TWDLVPPPPSHVTIVGCRWI 968


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score =  169 bits (427), Expect(4) = 3e-93
 Identities = 88/164 (53%), Positives = 108/164 (65%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            PS+ S+NVV CK +FR K     SIDR+K RL+AK F QRP +DY+ TFS VVKPT + L
Sbjct: 689  PSNPSQNVVGCKWIFRTKRNSDGSIDRFKARLVAKGFHQRPDIDYYDTFSPVVKPTTIML 748

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            VL++A    W +  LDVNNVFLQG+L E VYM  PP F      ++ CKLKKAIYGL QA
Sbjct: 749  VLSVAVSNGWILRQLDVNNVFLQGTLTEHVYMTQPPGFIDQDSPSHVCKLKKAIYGLKQA 808

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY  L +  +  G   S +D+SLF+L   G  VY L+YVDD
Sbjct: 809  PRAWYQELRSFLLQFGFTNSHADTSLFVLKFRGHLVYFLVYVDD 852



 Score =  133 bits (334), Expect(4) = 3e-93
 Identities = 83/234 (35%), Positives = 114/234 (48%), Gaps = 9/234 (3%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG L YFLGVE+        LSQ +Y +DLL   HM++ K V TP+ S         D 
Sbjct: 878  DLGKLSYFLGVEIVPNSQGFLLSQRRYLLDLLARTHMSEAKPVQTPLPSGTKISLHSGDK 937

Query: 1155 AVYVSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHT---- 1322
                + +R ++G LQYL  TR DI FA +KLS FMH P   HW   +RLLRYL  T    
Sbjct: 938  LSDPTEFRAVVGSLQYLLLTRLDIAFAANKLSQFMHTPTTEHWTLVKRLLRYLCGTPDHS 997

Query: 1323 ---HIGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSIS 1487
               +  SP  L         +    DW    ++ ++    + +   N + +  +K+K+I+
Sbjct: 998  LQLYCDSPLSLHAFSDALHAY-SDADWAGDPDDFSSTGAYIVYLGRNPISWSSKKQKNIA 1056

Query: 1488 RSSTEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            RSSTE EYR V    +E+N                P + CDNV  T +C+ PVF
Sbjct: 1057 RSSTEAEYRFVANTAAELNWVSSLLCDLGIQLPTCPVIYCDNVGATQVCSNPVF 1110



 Score = 68.9 bits (167), Expect(4) = 3e-93
 Identities = 35/63 (55%), Positives = 43/63 (68%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLVTF 1825
            FHSRMKHVA +FHFIR+QVQ+  L V H+ S DQ+AD+LTK L R  FL    K+ L   
Sbjct: 1110 FHSRMKHVAFDFHFIRDQVQKGILRVAHVSSTDQLADLLTKSLPRARFLFLRDKIGLSCR 1169

Query: 1826 TPN 1834
             P+
Sbjct: 1170 APS 1172



 Score = 43.1 bits (100), Expect(4) = 3e-93
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +3

Query: 306 LIPRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
           L P +  QA   P+W +AM  EYDALVRN TW+LVP
Sbjct: 654 LEPTTPTQALKDPKWRKAMSEEYDALVRNGTWELVP 689


>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
          Length = 1429

 Score =  150 bits (378), Expect(4) = 1e-89
 Identities = 72/160 (45%), Positives = 103/160 (64%)
 Frame = +2

Query: 422  SRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAI 601
            +++V+ CK +F +K+    SI RYK RL+A+ F Q+ G+DY  TFS V+K T +R VL +
Sbjct: 958  AKHVISCKWIFTLKYNVDGSIARYKARLVARGFNQQYGIDYSETFSPVIKSTTIRTVLEV 1017

Query: 602  AAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTW 781
            A + +W IH +D+NN FLQG+L E VY+  PP F      ++ C+L KA+YGL QA R W
Sbjct: 1018 AVKRNWSIHQVDINNAFLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAW 1077

Query: 782  YT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            Y  L    +  G V S +D+SLFI   +   +Y+L+YVDD
Sbjct: 1078 YQELRRFLLQAGFVNSLADASLFIYNRHNTFMYVLVYVDD 1117



 Score =  149 bits (376), Expect(4) = 1e-89
 Identities = 89/230 (38%), Positives = 121/230 (52%), Gaps = 5/230 (2%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG L YFLG+E T T   ++L Q KY  DLL + +M D K VSTPM+ T     L    
Sbjct: 1142 DLGPLSYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSGTA 1201

Query: 1155 AVYVSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHT---- 1322
                + YR ++G LQYL+FTRPDI FAV++LS FMH P   HW+A +R+LRYL  T    
Sbjct: 1202 LDDATEYRTVLGSLQYLAFTRPDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAGTKSHG 1261

Query: 1323 -HIGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVFQKEKSISRSST 1499
              + S + LT +      +   LD   +        G  P   ++    +K++S++RSST
Sbjct: 1262 IFLRSDTPLTIHAFSDADWGCDLDAYLSTNAYIVYFGGSPVSWSS----KKQRSVARSST 1317

Query: 1500 EVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            E EYR V    SE+              +  P + CDN+  TY+C  PVF
Sbjct: 1318 EAEYRAVANTASELRWLCSLLLEMGISQTTVPVIYCDNIGATYLCANPVF 1367



 Score = 65.1 bits (157), Expect(4) = 1e-89
 Identities = 30/63 (47%), Positives = 41/63 (65%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLVTF 1825
            FHSRMKHVA+++HF+R  +Q  AL V H+ + DQ+AD LTKPL R  F     K+ +   
Sbjct: 1367 FHSRMKHVALDYHFVRGYIQSGALRVSHVSTKDQLADALTKPLPRPRFTELNSKIGVQEL 1426

Query: 1826 TPN 1834
             P+
Sbjct: 1427 PPS 1429



 Score = 37.4 bits (85), Expect(4) = 1e-89
 Identities = 40/140 (28%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
 Frame = +3

Query: 21   SSKHICFSSPTQSALILLPPTTTSKPHIT*TYSRRTNKVTASV*APPRTTKSLPPH---- 188
            S+  +  S PT  +    P    + P         TN+   S   P   T S+  H    
Sbjct: 815  STGQVSVSGPTSQSPHTTPTNQNTSPLSKSPNPTNTNQSQNST-PPTSPTTSVHQHSPTP 873

Query: 189  --LNDLPPQ*KSATLSHLMIT***TNSLKPK---NFLAKINFA-PLIPRSYRQAQLYPQW 350
              L   PP        H M T       KPK   N    +  + P IP +  QA   P W
Sbjct: 874  SPLPQNPPLPPPPQNDHPMRTRAKNQITKPKTKFNLTTSLTSSKPTIPTTVAQALKDPNW 933

Query: 351  *EAMKAEYDALVRN*TWDLV 410
              AM  E +A ++N TWDLV
Sbjct: 934  RNAMSEEINAQMKNHTWDLV 953


>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
          Length = 1112

 Score =  160 bits (404), Expect(4) = 9e-89
 Identities = 82/164 (50%), Positives = 103/164 (62%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            PS   +N+  CK +FR K+ P  SIDRYK RL+AK F Q PG  Y  TFS V+KPT VRL
Sbjct: 651  PSHPXQNLXGCKWIFRTKYLPNGSIDRYKARLVAKGFHQXPGXXYSETFSPVIKPTTVRL 710

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            VL++A    W +  LD NN FLQG+L E  +M  PP F    H  + CKL+KAIYGL QA
Sbjct: 711  VLSLAVXQGWSLRQLDXNNXFLQGTLTEDXFMSQPPGFIDRDHPHHVCKLRKAIYGLKQA 770

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY  L    +  G + S  D+SLFI  N+G  +Y+L++VDD
Sbjct: 771  PRAWYHELRQFLLQFGFINSIVDTSLFIFNNHGTILYLLVHVDD 814



 Score =  139 bits (350), Expect(4) = 9e-89
 Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 3/228 (1%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG L YFLGVEVTS    ++LSQHKY  DLL+  HM + K   TP+ +T   + L+   
Sbjct: 840  DLGPLTYFLGVEVTSHTNGLFLSQHKYIADLLNRTHMTEAKPAPTPL-ATSPILTLQSGT 898

Query: 1155 AVY-VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHIG 1331
             +   + YR ++G LQYLS TRPDI + V+KLS FMH P   HW A +RLLRYL  T   
Sbjct: 899  PLSNPTEYRTMVGSLQYLSLTRPDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDH 958

Query: 1332 SPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTEV 1505
              +   T+     +F    DW   +++  +    + +   N + +  +K+++++RSST+ 
Sbjct: 959  GITLRRTSPLALHVF-SDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTKA 1017

Query: 1506 EYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            EYR V +  +E+                 P + CDNV  T + + PVF
Sbjct: 1018 EYRSVASTAAEICWICSLLTELGVTLPQQPVIYCDNVGATNLYSNPVF 1065



 Score = 51.2 bits (121), Expect(4) = 9e-89
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +3

Query: 177 LPPHLNDLPPQ*KSATLSHLMIT***TNSLKP---KNFLAKINFAPLIPRSYRQAQLYPQ 347
           LPP  ND       +   H+++T    N  KP    N  A +    L P +  QA   P+
Sbjct: 570 LPPTQNDPNQPPDLSPSPHVIVTRSKHNIHKPIQKXNLTAXLQQPTLEPTTVTQALKDPK 629

Query: 348 W*EAMKAEYDALVRN*TWDLVP 413
           W +AM AE+DAL+RN TWDLVP
Sbjct: 630 WRQAMSAEFDALLRNGTWDLVP 651



 Score = 48.5 bits (114), Expect(4) = 9e-89
 Identities = 20/33 (60%), Positives = 27/33 (81%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSAD 1744
            FHSRMKHVA+++HFIREQVQ   L V H+ +++
Sbjct: 1065 FHSRMKHVALDYHFIREQVQNGLLRVSHISASE 1097


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  164 bits (414), Expect(4) = 2e-88
 Identities = 80/164 (48%), Positives = 108/164 (65%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P +  +NV+ CK +++IK K   ++DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 961  PYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 1020

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            +L+IA    W +  LDV N FL G LEE VYM+ PP FES     Y CKL KA+YGL QA
Sbjct: 1021 ILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQA 1080

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+   + +G   SK+D+SLF L   G+ +++L+YVDD
Sbjct: 1081 PRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1124



 Score =  136 bits (342), Expect(4) = 2e-88
 Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 14/239 (5%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EVT  P  I L+Q KYA DLL  ++M++CK VSTP++       +   L
Sbjct: 1150 DLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLS-------VSEKL 1202

Query: 1155 AVY---------VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLR 1307
             +Y          + YR I+G LQYL+ TRPDI ++V+K+  F+H P   HW A +R+LR
Sbjct: 1203 TLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILR 1262

Query: 1308 YLKH-THIGSPSKLTTNRSFTCLF--*LRLDWKSTRENINNRLGCLPWELTNLLVF--QK 1472
            YL   T +G    L  ++S + L       DW  + ++  +  G   +  +NL+ +  +K
Sbjct: 1263 YLNQCTSLG----LNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARK 1318

Query: 1473 EKSISRSSTEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            + ++SRSSTE EY+ V    +E+                   + CDN+   Y+   PVF
Sbjct: 1319 QPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVF 1377



 Score = 59.7 bits (143), Expect(4) = 2e-88
 Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHF-HKLDL 1816
            FH+R KH+ +++HF+RE+V QK LE+  + S DQVAD  TK LS    L HF H L+L
Sbjct: 1377 FHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS-VRLLEHFKHNLNL 1433



 Score = 38.1 bits (87), Expect(4) = 2e-88
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 312  PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
            P++ ++A     W  AM+AEYDAL++N TW LVP
Sbjct: 928  PQNDKEALGDKNWKAAMEAEYDALIKNDTWHLVP 961


>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
          Length = 1534

 Score =  147 bits (371), Expect(4) = 1e-86
 Identities = 77/164 (46%), Positives = 102/164 (62%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P   ++NV+  K +F +K+ P  ++DRYK RL+A+ F Q+ GL Y  TFS VVK   +RL
Sbjct: 1058 PPKPNQNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQQYGLHYSETFSPVVKSLTIRL 1117

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            VL +A   SW I  LDVNN FLQG+L + VY+  PP F       + C+LKKA+YGL QA
Sbjct: 1118 VLQLAVSRSWTIKQLDVNNAFLQGTLTDEVYVTQPPGFIDPDRPHHVCRLKKALYGLKQA 1177

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY  L N   S+G   S +D+S+F+  N    VY L+YVDD
Sbjct: 1178 PRAWYQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCLVYVDD 1221



 Score =  141 bits (356), Expect(4) = 1e-86
 Identities = 89/228 (39%), Positives = 118/228 (51%), Gaps = 7/228 (3%)
 Frame = +3

Query: 987  LHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDLAV-Y 1163
            L YFLG+E T T   ++L QHKY  DLL  M M D K VSTPM +T   + L   +A+  
Sbjct: 1251 LVYFLGIEATRTSQGLHLMQHKYVYDLLSRMKMLDAKPVSTPM-ATHPKLSLYSGIALDE 1309

Query: 1164 VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHIGSPSK 1343
               YR +IG LQYL+FTRPDI +AV++LS FMH P   HW+A +R+LRYL  T       
Sbjct: 1310 PGEYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDIHWQAAKRVLRYLAGTATHG-IL 1368

Query: 1344 LTTNRSFTCLF*LRLDWKSTRENINNR------LGCLPWELTNLLVFQKEKSISRSSTEV 1505
            L +N   +       DW    ++  +       LG  P   ++    +K+K ++RSSTE 
Sbjct: 1369 LRSNSPLSLHAFSDADWAGDNDDFVSTNAYIVYLGSTPIAWSS----KKQKGVARSSTEA 1424

Query: 1506 EYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            EYR V    SE+                 P + CDNV  TY+   PVF
Sbjct: 1425 EYRAVANTTSEIRWVCSLLTELGITLPKMPVIYCDNVGATYLSANPVF 1472



 Score = 67.4 bits (163), Expect(4) = 1e-86
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLVTF 1825
            FHSRMKH+A+++HFIR+ V   AL V H+ + DQ+AD LTKPL R  FL+   K+ +   
Sbjct: 1472 FHSRMKHLALDYHFIRDNVSAGALRVSHISTHDQLADALTKPLPRQHFLQFSSKIGVSKL 1531

Query: 1826 TPN 1834
             P+
Sbjct: 1532 PPS 1534



 Score = 35.8 bits (81), Expect(4) = 1e-86
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 153  APPRTTKSLPPHLNDLPPQ*KSATLSHLMIT***TNSLKPK---NFLAK-INFAPLIPRS 320
            +P  +T +     N  PP     T +H M T    +  KPK   + LAK +   P IP +
Sbjct: 971  SPSSSTSATSTVPNPPPPP---PTNNHPMRTRAKNHITKPKTKLSLLAKTVQTRPQIPNT 1027

Query: 321  YRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
              QA    +W  AM  E +A +RN T++LVP
Sbjct: 1028 VNQALRDEKWRNAMGEEINAQIRNNTFELVP 1058


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  165 bits (418), Expect(4) = 1e-86
 Identities = 80/164 (48%), Positives = 109/164 (66%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P +  +N++ CK +++IK K   ++DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 970  PYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 1029

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            +L+IA    W +  LDV N FL G LEE VYM+ PP FESS    Y CKL KA+YGL QA
Sbjct: 1030 ILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQA 1089

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+   + +G   SK+D+SLF L   G+ +++L+YVDD
Sbjct: 1090 PRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDD 1133



 Score =  132 bits (332), Expect(4) = 1e-86
 Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 10/235 (4%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLE-ID 1151
            DLG LHYFLG+EVT     + L+Q KYA DLL  ++M++CK VSTP++ +      E   
Sbjct: 1159 DLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSP 1218

Query: 1152 LAVYVSL-YRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKH-TH 1325
            L    ++ YR I+G LQYL+ TRPDI ++V+K+  F+H P  SHW A +R+LRYL   T 
Sbjct: 1219 LGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTS 1278

Query: 1326 IG-----SPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSI 1484
            +G     S S L    S         DW  + ++  +  G   +  +NL+ +  +K+ ++
Sbjct: 1279 LGLHIHKSASTLVHGYS-------DADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTV 1331

Query: 1485 SRSSTEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            SRSSTE EY+ V    +E+                   + CDN+   Y+   PVF
Sbjct: 1332 SRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVF 1386



 Score = 58.5 bits (140), Expect(4) = 1e-86
 Identities = 27/57 (47%), Positives = 37/57 (64%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDL 1816
            FH+R KH+ +++HF+RE+V QK LE+  + S DQVAD  TK LS        H L+L
Sbjct: 1386 FHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFKHNLNL 1442



 Score = 35.8 bits (81), Expect(4) = 1e-86
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 312  PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
            P++ ++A     W +AM+ EY+AL++N TW LVP
Sbjct: 937  PQNDKEALGDKNWRDAMETEYNALIKNDTWHLVP 970


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score =  170 bits (431), Expect(4) = 2e-86
 Identities = 84/164 (51%), Positives = 108/164 (65%)
 Frame = +2

Query: 410 PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
           P    +N++DCK +++IK K   SIDRYK RL+AK F QR G+DY  TFS+VVK   +RL
Sbjct: 459 PPTQGKNIIDCKWMYKIKRKADGSIDRYKARLVAKGFKQRYGIDYEDTFSLVVKAATIRL 518

Query: 590 VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
           +L+IA    W +  LDV N FL G LEE VYMR PP FE+     Y CKL KA+YGL QA
Sbjct: 519 ILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQA 578

Query: 770 LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            R WY+ L+     +G + SK+D+SLF     G T++IL+YVDD
Sbjct: 579 PRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFILVYVDD 622



 Score =  129 bits (324), Expect(4) = 2e-86
 Identities = 80/229 (34%), Positives = 118/229 (51%), Gaps = 4/229 (1%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTST--CSFVDLEI 1148
            DLG LHYFLG+EV      + LSQ  YA D+L    M+ CK  STP+++T   S  D + 
Sbjct: 648  DLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDF 707

Query: 1149 DLAVYVSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHI 1328
                  S YR I+G LQYL+ TR D+ F V+K+  F+H+P   HW A +R+LRY+K T +
Sbjct: 708  LGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGT-V 766

Query: 1329 GSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTE 1502
                +   + S         DW    ++  +  G   +   NL+ +  +K+ ++SRSSTE
Sbjct: 767  EFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTE 826

Query: 1503 VEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
             EY+ +  A +EV               +   + CDN+  TY+   PVF
Sbjct: 827  AEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVF 875



 Score = 58.2 bits (139), Expect(4) = 2e-86
 Identities = 24/57 (42%), Positives = 40/57 (70%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDL 1816
            FH+R KH+ I++HF+REQV +K L+++ + + DQ+AD  TK L   +  ++ H L+L
Sbjct: 875  FHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAPSLAQYRHNLNL 931



 Score = 33.5 bits (75), Expect(4) = 2e-86
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
           P + R+A     W  AM+ EY A + N TW LVP
Sbjct: 426 PENLREAMANSNWRLAMEQEYSAFMSNKTWHLVP 459


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  161 bits (408), Expect(4) = 3e-86
 Identities = 82/164 (50%), Positives = 104/164 (63%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P    RNV+DCK +++IK K   S+DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 972  PPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 1031

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            VL+IA    W +  LDV N FL G LEE VYM+ PP +E      Y CKL KA+YGL QA
Sbjct: 1032 VLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQA 1091

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+     +G   SK D+SLF     G+ +++LIYVDD
Sbjct: 1092 PRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDD 1135



 Score =  140 bits (354), Expect(4) = 3e-86
 Identities = 86/230 (37%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EV      I L+Q KYA DLL  ++M DCK VSTP++++      E DL
Sbjct: 1161 DLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDL 1220

Query: 1155 A--VYVSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKH-TH 1325
               +  + YR ++G LQYL+ TRPDI F V+K+  F+H P   HW A +R+LRYLK  T 
Sbjct: 1221 LGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTK 1280

Query: 1326 IGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSST 1499
            +G   KL  ++S         DW  + ++  +  G   +   NL+ +  +K+ ++SRSST
Sbjct: 1281 LG--LKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRSST 1338

Query: 1500 EVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            E EY+ +  A +E+                   + CDN+   Y+ + PVF
Sbjct: 1339 ESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVF 1388



 Score = 54.7 bits (130), Expect(4) = 3e-86
 Identities = 25/57 (43%), Positives = 36/57 (63%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDL 1816
            FH+R KH+ +++HF+RE+V QK LE+  + + DQVAD  TK L         H L+L
Sbjct: 1388 FHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKHNLNL 1444



 Score = 33.5 bits (75), Expect(4) = 3e-86
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 312  PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
            P++   A     W +AM  EY+AL+ N TW LVP
Sbjct: 939  PKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVP 972


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
           gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
           Japonica Group]
          Length = 821

 Score =  162 bits (411), Expect(4) = 3e-86
 Identities = 81/164 (49%), Positives = 105/164 (64%)
 Frame = +2

Query: 410 PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
           P    RNV+DCK ++++K K   S+DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 340 PPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 399

Query: 590 VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
           VL++A    W +  LDV N FL G LEE VYM  PP +E      Y CKL KA+YGL QA
Sbjct: 400 VLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQA 459

Query: 770 LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            R WY+ L+     +G V SK+D+SLF      V++++LIYVDD
Sbjct: 460 PRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDD 503



 Score =  137 bits (344), Expect(4) = 3e-86
 Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 7/232 (3%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EV      + LSQ KYA DLL  + M +CK VSTP++++     L ++ 
Sbjct: 529  DLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTS---EKLSVNE 585

Query: 1155 AVYV-----SLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKH 1319
               +     + YR ++G LQYL+ TRPDI F+++K+  F+H P  +HW A +R+LRY+K+
Sbjct: 586  GTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKY 645

Query: 1320 THIGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRS 1493
            T + +  K   N S         DW  + ++  +  G   +   NL+ +  +K+ ++SRS
Sbjct: 646  T-VDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRS 704

Query: 1494 STEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            STE EY+ +  A +E+                   + CDN+   Y+   P+F
Sbjct: 705  STEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIF 756



 Score = 53.5 bits (127), Expect(4) = 3e-86
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPL 1774
            FH+R KH+ ++FHF+RE+V +K LE+ ++ + DQVAD  TK +
Sbjct: 756  FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 798



 Score = 37.4 bits (85), Expect(4) = 3e-86
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 312 PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
           P+S  +A     W EAM AEY AL+ N TW LVP
Sbjct: 307 PQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVP 340


>emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score =  165 bits (418), Expect(3) = 4e-85
 Identities = 80/156 (51%), Positives = 103/156 (66%)
 Frame = +2

Query: 434  VDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAIAAQC 613
            V CK +FR+K K   S+D++KTRL+AK +TQRPGLDY  TFS VV+P  +R VL IA   
Sbjct: 907  VGCKWVFRVKRKADGSVDKFKTRLVAKDYTQRPGLDYKETFSPVVRPATIRCVLTIAVMN 966

Query: 614  SWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTWYT*L 793
             WP+  +D+NN FL G+L E VYM  PP F+ +    + C+L+KAIYGL QA R WYT L
Sbjct: 967  GWPLRQMDINNAFLHGTLTETVYMMQPPGFKDTSKPDHVCRLRKAIYGLRQAPRAWYTTL 1026

Query: 794  TNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
                  +G   SK+DSSLFI  +  +  Y L+YVDD
Sbjct: 1027 RTALFQLGFKNSKADSSLFIYTHGPIICYFLVYVDD 1062



 Score =  159 bits (403), Expect(3) = 4e-85
 Identities = 106/278 (38%), Positives = 148/278 (53%), Gaps = 5/278 (1%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            D+G   +FLGVEV  T   ++LSQH+Y  DLL   +M   K VSTP+++T S    +   
Sbjct: 1088 DMGNHSFFLGVEVIPTRAGLFLSQHQYIRDLLSTTNMLGAKDVSTPLSTTASLKLFDGTA 1147

Query: 1155 AVYVSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHIGS 1334
             V  + +RR+IG LQYLS TRPDI FAV+KLS FMH P  +HW AT+RLLRYLK T I  
Sbjct: 1148 PVDSTDFRRVIGSLQYLSLTRPDISFAVNKLSQFMHKPTTAHWTATKRLLRYLKQT-IFH 1206

Query: 1335 PSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTEVE 1508
              +LT N +         DW    ++  +    + +  TN + +  +K+++I+RSSTE E
Sbjct: 1207 GIQLTRNTTSVLTTFSDADWVGNVDDRTSTSAYISFLGTNPISWSSKKQRAIARSSTEAE 1266

Query: 1509 YRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPV--FIVG*SMLLLIF 1682
            YR +  A SE                 PP +LCDN+  T++   PV    +    + L F
Sbjct: 1267 YRALANATSETVWLNSLHHELGFPLKVPPLLLCDNLGATHLSFNPVNHSRMKYIQIDLHF 1326

Query: 1683 ILFVSKFNKRHLRFV-TFTLLIKLLTSSPSLFRVQLFC 1793
            +  + +    H+R V T   L  LLT   S  R +L C
Sbjct: 1327 VRELVQNGTLHVRHVHTQDQLADLLTKPLSRQRTELLC 1364



 Score = 40.8 bits (94), Expect(3) = 4e-85
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = +3

Query: 231  HLMIT***TNSLKPKNF-LAKINFAPLI--PRSYRQAQLYPQW*EAMKAEYDALVRN*TW 401
            H M T    N  KPK   L   +  PL   P    QA  +PQW +AM  E  AL+++ TW
Sbjct: 836  HKMTTRSMNNIFKPKQLHLVSKHPIPLAIEPTCATQAVNHPQWRDAMSTELTALMKHGTW 895

Query: 402  DLVPVI----SLGMLWI 440
            DLVP +     +G  W+
Sbjct: 896  DLVPPLPNCTPVGCKWV 912


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  163 bits (413), Expect(4) = 4e-85
 Identities = 81/164 (49%), Positives = 106/164 (64%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P    RNV+DCK ++++K K   S+DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 918  PPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 977

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            VL++A    W +  LDV N FL G LEE VYM+ PP +E      Y CKL KA+YGL QA
Sbjct: 978  VLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQA 1037

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+     +G V SK+D+SLF      V++++LIYVDD
Sbjct: 1038 PRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDD 1081



 Score =  134 bits (338), Expect(4) = 4e-85
 Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 7/232 (3%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EV      + LSQ KYA DLL  + M +CK VSTP++++     L ++ 
Sbjct: 1107 DLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTS---EKLSVNE 1163

Query: 1155 AVYV-----SLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKH 1319
               +     + YR ++G LQYL+ TRPDI F+++K+  F+H P  +HW A +R+LRY+K+
Sbjct: 1164 GTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKY 1223

Query: 1320 THIGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRS 1493
            T + +  K   N S         DW  + ++  +  G   +   NL+ +  +K+ ++SRS
Sbjct: 1224 T-VDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRS 1282

Query: 1494 STEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            S E EY+ +  A +E+                   + CDN+   Y+   P+F
Sbjct: 1283 SIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIF 1334



 Score = 53.5 bits (127), Expect(4) = 4e-85
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPL 1774
            FH+R KH+ ++FHF+RE+V +K LE+ ++ + DQVAD  TK +
Sbjct: 1334 FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 1376



 Score = 35.0 bits (79), Expect(4) = 4e-85
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3

Query: 315 RSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
           +S  +A     W EAM AEY AL+ N TW LVP
Sbjct: 886 KSLEEAVNNKHWKEAMDAEYMALIENKTWHLVP 918


>ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846463 [Brachypodium
           distachyon]
          Length = 989

 Score =  155 bits (393), Expect(4) = 4e-85
 Identities = 78/158 (49%), Positives = 108/158 (68%)
 Frame = +2

Query: 428 NVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAIAA 607
           N+V  + +F+ K  P   +D+YK RL+A+ FTQ+ G+DYH TFS VVKP  VRLVL++AA
Sbjct: 517 NIVGSRWIFKTKFCPDGLVDKYKARLVARGFTQQYGIDYHDTFSPVVKPVTVRLVLSLAA 576

Query: 608 QCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTWYT 787
              W +  +DV+N FL G L E VYM+ PP FE  +   + CKL++A+YGL Q+ R WY 
Sbjct: 577 SRGWCLRQVDVSNSFLHGFLTEEVYMQQPPGFEDPRCPQHVCKLQRALYGLKQSPRAWYA 636

Query: 788 *LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            L++    +G V SK+D+SLFI  + GV VY+L+YVDD
Sbjct: 637 CLSDKLHQLGFVASKADTSLFIFDHQGVMVYMLVYVDD 674



 Score =  131 bits (329), Expect(4) = 4e-85
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 4/229 (1%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFV-DLEID 1151
            DLG L YFLG+E   +   + L QHKYA+DLL   +M  C+ V+TPM+++     DL   
Sbjct: 700  DLGRLEYFLGIEAAYSFEGMVLMQHKYALDLLHRANMEQCRPVTTPMSTSDKLTRDLGEP 759

Query: 1152 LAVYVSL-YRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHI 1328
            L +  S  YR +IG LQYL+ TRPD+ FAV+K+  ++  P  +H++  +R+LR++K   +
Sbjct: 760  LGLEDSFKYRSLIGGLQYLTLTRPDLSFAVNKVCQYLSQPTTAHYEVVKRILRFVKGI-V 818

Query: 1329 GSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTE 1502
             +  +   + S         DW    ++  +  G   +   NL+ +  +K+ ++SRSSTE
Sbjct: 819  STGLRFQRSSSTRLGIFTDADWAGCSDDRRSTGGFAVFLGPNLVSWSSRKQPTVSRSSTE 878

Query: 1503 VEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
             EY+V+    +E               S PP + CDN+  TY+   PVF
Sbjct: 879  AEYKVLANGTAEAIWIQSVLKELGVYQSRPPVLWCDNIGATYLSANPVF 927



 Score = 62.0 bits (149), Expect(4) = 4e-85
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLV 1819
            FH+R KH+ I+FHF+RE+V   AL+VR + +ADQ+ADV TKP ++    R    L+LV
Sbjct: 927  FHARTKHIEIDFHFVREKVALGALDVRSISTADQLADVFTKPATQLTLHRFSTNLNLV 984



 Score = 37.7 bits (86), Expect(4) = 4e-85
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +3

Query: 318 SYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
           S+R A   P W  AM+A++DAL +N TW LVP
Sbjct: 480 SHRMALTEPAWHAAMEAKFDALQKNQTWTLVP 511


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  161 bits (407), Expect(4) = 5e-85
 Identities = 81/164 (49%), Positives = 106/164 (64%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P    RNV+DCK +++IK K   S+DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 956  PPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 1015

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            +L+IA    W +  LDV N FL G LEE VYM+ PP +E+     Y CKL KA+YGL QA
Sbjct: 1016 ILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQA 1075

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+     +G   SK+D+SLF      +T+++LIYVDD
Sbjct: 1076 PRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDD 1119



 Score =  141 bits (355), Expect(4) = 5e-85
 Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 4/229 (1%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EVT  P  I +SQ KYA DLL  ++M+DCK V+TP++++   +  +  +
Sbjct: 1145 DLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTI 1204

Query: 1155 --AVYVSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHI 1328
                  + YR I+G LQYL+ TR DI F+V+K+  F+HNP   HW A +R+LRY+K    
Sbjct: 1205 LGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQC-T 1263

Query: 1329 GSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTE 1502
            G   ++  + S         DW    ++  +  G   +   NL+ +  +K+ ++SRSSTE
Sbjct: 1264 GLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTE 1323

Query: 1503 VEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
             EY+ +  A +E+               A   + CDN+   Y+   PVF
Sbjct: 1324 AEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVF 1372



 Score = 51.2 bits (121), Expect(4) = 5e-85
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPL 1774
            FH+R KH+ +++HF+RE+V +K L+V ++ + DQVAD  TK L
Sbjct: 1372 FHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKAL 1414



 Score = 32.7 bits (73), Expect(4) = 5e-85
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 312  PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
            P + + A     W  AM AEY AL++N TW LVP
Sbjct: 923  PENLQDALQNNNWKCAMDAEYMALIKNNTWHLVP 956


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  165 bits (417), Expect(4) = 1e-84
 Identities = 81/164 (49%), Positives = 109/164 (66%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P +  +N++ CK ++++K K   ++DRYKTRLIAK F QR G+DY  TFS VVK   +R+
Sbjct: 973  PYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATIRI 1032

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            +L+IA    W +  LDV N FL G LEE VYM+ PP FESS    Y CKL KA+YGL QA
Sbjct: 1033 ILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQA 1092

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+     +G   SK+D+SLF L   G+ +++L+YVDD
Sbjct: 1093 PRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1136



 Score =  127 bits (319), Expect(4) = 1e-84
 Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EVT     + L+Q KYA D+L  ++M++CK VSTP++       +   L
Sbjct: 1162 DLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLS-------VSEKL 1214

Query: 1155 AVY---------VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLR 1307
             +Y          + YR I+G LQYL+ TRPDI ++V+K+  F+H P  SHW A +R+LR
Sbjct: 1215 TLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILR 1274

Query: 1308 YLKH-THIGSPSKLTTNRSFTCLF--*LRLDWKSTRENINNRLGCLPWELTNLLVF--QK 1472
            YL   T +G    L  ++S + L       D   + ++  +  G   +  +NL+ +  +K
Sbjct: 1275 YLNQCTSLG----LHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARK 1330

Query: 1473 EKSISRSSTEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            + ++SRSSTE EY+ V    +E+                   + CDN+   Y+   PVF
Sbjct: 1331 QPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVF 1389



 Score = 57.0 bits (136), Expect(4) = 1e-84
 Identities = 26/57 (45%), Positives = 37/57 (64%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDL 1816
            FH++ KH+ +++HF+RE+V QK LE+  + S DQVAD  TK LS        H L+L
Sbjct: 1389 FHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNL 1445



 Score = 35.8 bits (81), Expect(4) = 1e-84
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 312  PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
            P++ ++A     W +AM+ EY+AL++N TW LVP
Sbjct: 940  PQNDKEALGDKNWRDAMETEYNALIKNDTWHLVP 973


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 900

 Score =  151 bits (381), Expect(4) = 1e-84
 Identities = 77/159 (48%), Positives = 103/159 (64%)
 Frame = +2

Query: 425 RNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAIA 604
           +N++D K +++IK K   +IDRYK RL+AK F QR G+DY  TFS VVK   +RLVL+IA
Sbjct: 422 KNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLVLSIA 481

Query: 605 AQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTWY 784
               W +  LDV N FL G L+E VYMR PP FE ++   + CKL KA+YGL QA R WY
Sbjct: 482 MSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWY 541

Query: 785 T*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
           + L+     +G   SK+D+SLF        +++L+YVDD
Sbjct: 542 SRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLVYVDD 580



 Score =  136 bits (343), Expect(4) = 1e-84
 Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 14/239 (5%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EV  TP  + LSQ +Y  +LL+ ++M  CK VSTP+ ST   + +EI  
Sbjct: 606  DLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTPL-STAEKLSVEIGD 664

Query: 1155 AVY---VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTH 1325
             +    V+ YR I+G LQYL+ TRPDI ++V+K+  F+  P  +HW A +R+LRYLK T 
Sbjct: 665  ELGPSDVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQTPTTAHWSAVKRILRYLKGT- 723

Query: 1326 IGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELT---------NLLVF--QK 1472
            +    K+  + S         DW  + ++  +  G      T         NL+ +  +K
Sbjct: 724  LDLGLKIVKSSSNLVSAFSDADWAGSVDDRRSTGGFADRRSTGGFAVFFGDNLISWSARK 783

Query: 1473 EKSISRSSTEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            + ++SRSSTE EY+ +  A +E+                   + CDN+  TY+   PVF
Sbjct: 784  QATVSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVF 842



 Score = 63.9 bits (154), Expect(4) = 1e-84
 Identities = 28/58 (48%), Positives = 40/58 (68%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLV 1819
            FH+R KH+ +++HF+REQV QK L++  + S DQVAD  TKP+S    +   H L+LV
Sbjct: 842  FHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIGFRHNLNLV 899



 Score = 33.5 bits (75), Expect(4) = 1e-84
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 312 PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVPVI 419
           P S ++A     W +AM  E+ AL+ N TW LVP +
Sbjct: 384 PSSLQEALSSANWKQAMDKEFSALLHNKTWHLVPPV 419


>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268438|emb|CAB80958.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1474

 Score =  158 bits (399), Expect(3) = 4e-84
 Identities = 82/160 (51%), Positives = 106/160 (66%)
 Frame = +2

Query: 422  SRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRLVLAI 601
            S+ +V CK +F++K+ P  +ID+YK RL+AK F Q+ G+DY  TFS V+K T +RLVL +
Sbjct: 1002 SQLLVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYAETFSPVIKSTTIRLVLDV 1061

Query: 602  AAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQALRTW 781
            A +  W I  LDVNN FLQG+L E VYM  PP F      T+ C+L+KAIYGL QA R W
Sbjct: 1062 AVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLRKAIYGLKQAPRAW 1121

Query: 782  YT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
            Y  L     +IG V S SD+SLFI  +    VY+L+YVDD
Sbjct: 1122 YMELKQHLFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDD 1161



 Score =  136 bits (343), Expect(3) = 4e-84
 Identities = 82/223 (36%), Positives = 116/223 (52%), Gaps = 2/223 (0%)
 Frame = +3

Query: 987  LHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDLAVYV 1166
            LHYFLG+E T T   ++L Q KY  DLL + +MAD K V TP+ ++              
Sbjct: 1191 LHYFLGIEATRTKQGLHLMQRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDA 1250

Query: 1167 SLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKHTHIGSPSKL 1346
            S YR ++G LQYL+FTRPDI +AV++LS  M  P   HW+A +R+LRYL  T        
Sbjct: 1251 SEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGIFLD 1310

Query: 1347 TTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSSTEVEYRVV 1520
            TT+      F    DW    ++  +    + +   N + +  +K++ ++RSSTE EYR V
Sbjct: 1311 TTSPLNLHAF-SDADWAGDSDDYVSTNAYVIYLGKNPISWSSKKQRGVARSSTESEYRAV 1369

Query: 1521 VAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
              A SEV                 P++ CDN+  TY+C  PVF
Sbjct: 1370 ANAASEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYLCANPVF 1412



 Score = 67.8 bits (164), Expect(3) = 4e-84
 Identities = 31/63 (49%), Positives = 42/63 (66%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDLVTF 1825
            FHSRMKH+AI++HF+R  +Q  AL V H+ + DQ+AD LTKPLSR  F     K+ +   
Sbjct: 1412 FHSRMKHIAIDYHFVRNMIQSGALRVSHVSTRDQLADALTKPLSRAHFQSARFKIGVRQL 1471

Query: 1826 TPN 1834
             P+
Sbjct: 1472 PPS 1474


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  165 bits (417), Expect(4) = 6e-84
 Identities = 81/164 (49%), Positives = 110/164 (67%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P +  +N++ CK ++++K K   ++DRYKTRLIAK F QR G+DY  TFS VVK   +R+
Sbjct: 973  PYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATIRI 1032

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            +L+IA    W +  LDV N FL+G LEE VYM+ PP FESS    Y CKL KA+YGL QA
Sbjct: 1033 ILSIAVSRGWNLRQLDVQNDFLRGFLEEEVYMQQPPGFESSSKRDYVCKLNKALYGLKQA 1092

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY+ L+     +G   SK+D+SLF L   G+ +++L+YVDD
Sbjct: 1093 PRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1136



 Score =  125 bits (313), Expect(4) = 6e-84
 Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 18/243 (7%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EVT     + L+Q KYA D+L  ++M++C  VSTP++       +   L
Sbjct: 1162 DLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCTPVSTPLS-------VSEKL 1214

Query: 1155 AVY---------VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLR 1307
             +Y          + YR I+G LQYL+ TRPDI ++V+K+  F+H P  SHW A +R+LR
Sbjct: 1215 TLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILR 1274

Query: 1308 YLK-------HTHIGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF 1466
            YL        H H  S S L    S         D   + ++  +  G   +  +NL+ +
Sbjct: 1275 YLNQCTSPGLHVH-KSASTLVHGYS-------DADGAGSIDDRKSTGGFAVFLGSNLVSW 1326

Query: 1467 --QKEKSISRSSTEVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTY 1640
              +K+ ++SRSSTE EY+ V    +E+                   + CDN+   Y+   
Sbjct: 1327 SARKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSAN 1386

Query: 1641 PVF 1649
            PVF
Sbjct: 1387 PVF 1389



 Score = 57.0 bits (136), Expect(4) = 6e-84
 Identities = 26/57 (45%), Positives = 37/57 (64%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLSRTAFLRHFHKLDL 1816
            FH++ KH+ +++HF+RE+V QK LE+  + S DQVAD  TK LS        H L+L
Sbjct: 1389 FHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNL 1445



 Score = 35.8 bits (81), Expect(4) = 6e-84
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 312  PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
            P++ ++A     W +AM+ EY+AL++N TW LVP
Sbjct: 940  PQNDKEALGDKNWRDAMETEYNALIKNDTWHLVP 973


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  159 bits (403), Expect(4) = 6e-84
 Identities = 79/164 (48%), Positives = 104/164 (63%)
 Frame = +2

Query: 410  PSDFSRNVVDCK*LFRIKHKPAESIDRYKTRLIAKSFTQRPGLDYHSTFSVVVKPTMVRL 589
            P    RN++D K +++IK K   S+DRYK RL+AK F QR G+DY  TFS VVK   +R+
Sbjct: 781  PPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI 840

Query: 590  VLAIAAQCSWPIHLLDVNNVFLQGSLEE*VYMR*PPDFESSQHSTYDCKLKKAIYGLTQA 769
            +L+IA    W +  LDV N FL G LEE VYM+ PP +E   H  Y CKL KA+YGL QA
Sbjct: 841  ILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQA 900

Query: 770  LRTWYT*LTNC*ISIGLVKSKSDSSLFILFNYGVTVYILIYVDD 901
             R WY  L+     +G   SK+D+SLF     G+ +++L+YVDD
Sbjct: 901  PRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDD 944



 Score =  136 bits (343), Expect(4) = 6e-84
 Identities = 84/230 (36%), Positives = 124/230 (53%), Gaps = 5/230 (2%)
 Frame = +3

Query: 975  DLGILHYFLGVEVTSTPTAIYLSQHKYAMDLLDEMHMADCKGVSTPMTSTCSFVDLEIDL 1154
            DLG LHYFLG+EV    + I L+Q KY  DLL  + M DCK VSTP++++      E DL
Sbjct: 970  DLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDL 1029

Query: 1155 AVY--VSLYRRIIGKLQYLSFTRPDIGFAVSKLSHFMHNPKLSHWKATRRLLRYLKH-TH 1325
                  S YR ++G LQYL+ TRPDI F V+K+  F+H P + HW A +R+LRYLK  T 
Sbjct: 1030 LGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTK 1089

Query: 1326 IGSPSKLTTNRSFTCLF*LRLDWKSTRENINNRLGCLPWELTNLLVF--QKEKSISRSST 1499
            +G   K++ ++S         DW    ++  +  G   +   NL+ +  +K+ ++ RSST
Sbjct: 1090 LG--LKISKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQATVPRSST 1147

Query: 1500 EVEYRVVVAAISEVNXXXXXXXXXXXXXSAPPTVLCDNVSTTYICTYPVF 1649
            E EY+ +  A +E+                   + CDN+   Y+ + PVF
Sbjct: 1148 ESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVF 1197



 Score = 55.5 bits (132), Expect(4) = 6e-84
 Identities = 23/44 (52%), Positives = 34/44 (77%)
 Frame = +2

Query: 1646 FHSRMKHVAINFHFIREQVQQKALEVRHLHSADQVADVLTKPLS 1777
            FH+R KH+ +++HF+RE++Q+K LEV  + + DQVAD  TK LS
Sbjct: 1197 FHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALS 1240



 Score = 31.2 bits (69), Expect(4) = 6e-84
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 PRSYRQAQLYPQW*EAMKAEYDALVRN*TWDLVP 413
           PR    A     W  AM A++ AL+ N TW LVP
Sbjct: 748 PRDLHDALHDTNWKHAMDAKFTALLHNKTWHLVP 781