BLASTX nr result

ID: Atropa21_contig00018271 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00018271
         (508 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006349361.1| PREDICTED: E3 ubiquitin-protein ligase RNF17...   104   1e-20
ref|XP_006349362.1| PREDICTED: E3 ubiquitin-protein ligase RNF17...    59   7e-07
ref|XP_004230479.1| PREDICTED: E3 ubiquitin-protein ligase RNF17...    59   7e-07

>ref|XP_006349361.1| PREDICTED: E3 ubiquitin-protein ligase RNF170-like isoform X1
           [Solanum tuberosum]
          Length = 316

 Score =  104 bits (259), Expect = 1e-20
 Identities = 55/68 (80%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
 Frame = +3

Query: 21  AVKMLLMCLITLPLHYPRCYIWLGYIFNESVSAM*GK*LQ-ILLLIDSWQLMKQIFVVKS 197
           AVKM LMCLI LPLHYP+CYIWLG IF+E VSAM GK L+ ILLLIDS QL+KQIFVV S
Sbjct: 248 AVKMSLMCLIILPLHYPQCYIWLGCIFDEGVSAMLGKWLRLILLLIDSCQLVKQIFVVNS 307

Query: 198 LWSLKILD 221
           LWSLKILD
Sbjct: 308 LWSLKILD 315


>ref|XP_006349362.1| PREDICTED: E3 ubiquitin-protein ligase RNF170-like isoform X2
           [Solanum tuberosum]
          Length = 310

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 29/44 (65%), Positives = 32/44 (72%)
 Frame = +2

Query: 2   FDFLRIGRQNVIDVFDYSAIAXXXXXXXXXXXXQRKRFRHVREI 133
           FDFLRIGRQNVIDVFDYSAIA            +R+RFRHVRE+
Sbjct: 259 FDFLRIGRQNVIDVFDYSAIALSSVLYLVGLYLRRRRFRHVREM 302


>ref|XP_004230479.1| PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Solanum
           lycopersicum]
          Length = 312

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 29/44 (65%), Positives = 32/44 (72%)
 Frame = +2

Query: 2   FDFLRIGRQNVIDVFDYSAIAXXXXXXXXXXXXQRKRFRHVREI 133
           FDFLRIGRQNVIDVFDYSAIA            +R+RFRHVRE+
Sbjct: 261 FDFLRIGRQNVIDVFDYSAIALSSVLYLVGLYLRRRRFRHVREM 304


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