BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00018016
         (2900 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   199   e-118
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   204   e-117
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   180   1e-95
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   174   2e-90
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   176   2e-89
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           176   2e-89
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   191   8e-88
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       175   5e-87
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   171   6e-87
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   169   1e-86
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               170   1e-86
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   175   1e-84
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               172   3e-84
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   166   1e-83
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   161   4e-82
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   164   8e-81
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                168   1e-80
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   164   2e-80
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   168   3e-79
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   166   3e-78

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  199 bits (507), Expect(3) = e-118
 Identities = 102/254 (40%), Positives = 149/254 (58%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L+ M+K LGFP  FI WIM C+ T  YSI LN          +GLR GDP+SP LF + M
Sbjct: 600  LESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSM 659

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
            EYLSR +  + + P F FH KC  I L H+  ADD+L+F + +  S+  ++    +F+ A
Sbjct: 660  EYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKA 719

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S LQ +  +S I+   +  +  E +        GSL FRYLGV +++K++N   C+ L D
Sbjct: 720  SGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLID 779

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            K++ R + W +  LSYAGR+QL+ ++L  + +YW  IF LPKK++K +   CR FLW G 
Sbjct: 780  KITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGT 839

Query: 1422 EEIRKVSLVACDLV 1381
             +    + VA D +
Sbjct: 840  VDTSYKAPVAWDFL 853



 Score =  184 bits (466), Expect(3) = e-118
 Identities = 94/253 (37%), Positives = 146/253 (57%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            LKQKS++ W++  D N+KFF   +K R+  N +  +++ +    +E  +  N     Y +
Sbjct: 347  LKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRR 406

Query: 2720 LLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRS 2541
            LLGTS    E +   VV+ G  +S      LVQ +T +EI  AL  I   KA G D F S
Sbjct: 407  LLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNS 466

Query: 2540 RIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNTI 2361
              FK SW ++  ++   +  FF    M + +N T +T+IPK   A    D+RPI+CC+T+
Sbjct: 467  VFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTL 526

Query: 2360 YMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIKI 2181
            Y +ISK++  RL+ V+  ++   Q  F+  R IG NIL+  +L+R Y R++ +  C+IK+
Sbjct: 527  YKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKV 586

Query: 2180 DLKKAYDSMEWEF 2142
            D++KAYDS+EW F
Sbjct: 587  DIRKAYDSVEWVF 599



 Score = 93.6 bits (231), Expect(3) = e-118
 Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 7/237 (2%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYEPSVNXX 1199
            QPK+ GGL V N ++ N+AA++K +W I  K D LWV+WVN  YIK  +      S N  
Sbjct: 855  QPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTS 914

Query: 1198 XXXXXXXXXXXXXKDGYVGNGWQMADG--QYSIKSHYSWRRGAMETWQASK*TWSTMNIP 1025
                                GW+       +SIK  Y   +   E     +   +    P
Sbjct: 915  WILRKIFESRELLTR---TGGWEAVSNHMNFSIKKTYKLLQEDYENVVWKRLICNNKATP 971

Query: 1024 KHCFISCLAGHNRLLTRQKLKRIGIIDDDKCGLCGEDVEKMKHLLFECSFSKKCLCNMLL 845
            K  FI  LA  NRL T +++ R        C +CG ++E ++HL F C +SK+    +LL
Sbjct: 972  KSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNCIYSKEIWGKVLL 1031

Query: 844  WMGLGVQ-----NTELLGLWSRMTIYKKGRNKREFIATVLVALIYNI*RARNEAVWR 689
            ++ L  Q       EL    +R T   K RNK      +    +Y I   RN  V+R
Sbjct: 1032 YLNLQPQADAQAKKELAIKKARST---KDRNK--LYVMMFTESVYAIWLLRNAKVFR 1083


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  204 bits (518), Expect(3) = e-117
 Identities = 97/250 (38%), Positives = 155/250 (62%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L+ ++   GFP +F+ WIM+C++T  YS+ +N       +  +GLR GDP+SP LF +CM
Sbjct: 597  LETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCM 656

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
            EYLSR L+ +   P F FH KC  + + H+  ADD+L+FC+ +  S+  +    + F++A
Sbjct: 657  EYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHA 716

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L  +  +SNI+   +D ++  ++      Q G L FRYLGV +++K++    C+ L +
Sbjct: 717  SGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVE 776

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
             ++ R + W ++ LSYAGR+QLI S+L  + +YW+ IF L KKV++ +  +CR FLW GK
Sbjct: 777  MITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGK 836

Query: 1422 EEIRKVSLVA 1393
             E  K + VA
Sbjct: 837  TEETKKAPVA 846



 Score =  187 bits (475), Expect(3) = e-117
 Identities = 92/253 (36%), Positives = 148/253 (58%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            L+QKS++ W+ Q D N+K F   +KAR   N +  +     +V  +  +     +E Y +
Sbjct: 344  LQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKK 403

Query: 2720 LLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRS 2541
            LLGT       V  + V+ GK +S   K  L++ V + EI  AL  I  +KA G D F +
Sbjct: 404  LLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNA 463

Query: 2540 RIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNTI 2361
              FK SW  +  ++   +Q FF    M R +N  ++T++PK +HA  V +FRPI+CC  I
Sbjct: 464  YFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVI 523

Query: 2360 YMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIKI 2181
            Y +ISK++ NR++ ++  +++  Q+ F+ GR I  NIL+  +L+R Y RK+ +  C++K+
Sbjct: 524  YKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKV 583

Query: 2180 DLKKAYDSMEWEF 2142
            D++KAYDS+EW F
Sbjct: 584  DIRKAYDSVEWSF 596



 Score = 81.6 bits (200), Expect(3) = e-117
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 6/232 (2%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYEPSVNXX 1199
            +PK+ GG  VIN    N AA++K +W I  K D LWV+W++  YIK  D  T    VN  
Sbjct: 852  RPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILT----VNIS 907

Query: 1198 XXXXXXXXXXXXXKD--GYVGNGWQMADG-QYSIKSHYSWRRGAMETWQASK*TWSTMNI 1028
                         +D    +G+  ++  G ++S+K  Y       E  +  +   +    
Sbjct: 908  NQTTWILRKIVKARDHLSNIGDWDEICIGDKFSMKKAYKKISENGERVRWRRLICNNYAT 967

Query: 1027 PKHCFISCLAGHNRLLTRQKLKRIGIIDDDKCGLCGEDVEKMKHLLFECSFSK---KCLC 857
            PK  FI  +  H RL T  ++ R G+  D    LC  D E ++HL F CS+S      +C
Sbjct: 968  PKSKFILWMMLHERLPTVDRISRWGVQCDLNYRLCRNDGETIQHLFFSCSYSAGVWSKIC 1027

Query: 856  NMLLWMGLGVQNTELLGLWSRMTIYKKGRNKREFIATVLVALIYNI*RARNE 701
             ++ +   GV + E++         KKG+     I  +    +Y I + RN+
Sbjct: 1028 YIMRFPNSGVSHQEIISSVCGQARKKKGK----LIVMLYTEFVYAIWKQRNK 1075


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  180 bits (456), Expect(3) = 1e-95
 Identities = 89/248 (35%), Positives = 147/248 (59%)
 Frame = -3

Query: 2121 LGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLSRIL 1942
            LGFP +FI WI  CI T  +S+ +N  + G  +  RGLR G  +SP LFVICM+ LS++L
Sbjct: 619  LGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKML 678

Query: 1941 KRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQTNA 1762
             +      F +H KC+++GL H+  ADD+++   G  +S+  +++  + F   S L+ + 
Sbjct: 679  DKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISL 738

Query: 1761 GESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSARVK 1582
             +S ++ A +   +  ++     +  G L  RYLG+ +  KR++T DC  L +++  R+ 
Sbjct: 739  EKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIG 798

Query: 1581 AWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIRKVS 1402
            +W+SR LSYAGR+ LI+SVL  I ++W + F LP+K ++ L  +C  FLW G E     +
Sbjct: 799  SWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKA 858

Query: 1401 LVACDLVC 1378
             ++  +VC
Sbjct: 859  KISWHMVC 866



 Score =  174 bits (442), Expect(3) = 1e-95
 Identities = 95/255 (37%), Positives = 150/255 (58%), Gaps = 2/255 (0%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            LKQKSK++W    DQNTK FH    AR   N++  I      V ++  +        + +
Sbjct: 357  LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFRE 416

Query: 2720 LLGTSKDDREHVCSSVVQQGKTV--SEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCF 2547
             L    +D E V  + +QQ   V  S+  +  L++ VTA+EI+  L+ +  +K+ GPD +
Sbjct: 417  FLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGY 476

Query: 2546 RSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCN 2367
             S  FK +W+I+G +    VQ FF    + + +N+T++ +IPK   A  + D+RPISCCN
Sbjct: 477  TSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCN 536

Query: 2366 TIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLI 2187
             +Y VISK++ NRL+ VLP  I+ NQ+ FV+ R + +N+L+  +LV+ Y +   +  C I
Sbjct: 537  VLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAI 596

Query: 2186 KIDLKKAYDSMEWEF 2142
            KID+ KA+DS++W F
Sbjct: 597  KIDISKAFDSVQWPF 611



 Score = 46.6 bits (109), Expect(3) = 1e-95
 Identities = 19/58 (32%), Positives = 35/58 (60%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYEPSVN 1205
            +PK+ GGL + +    N+   +K VW I   +++LWVKWV+   ++ A +W  + +V+
Sbjct: 867  KPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  174 bits (442), Expect(3) = 2e-90
 Identities = 90/241 (37%), Positives = 145/241 (60%)
 Frame = -3

Query: 2154 GVGVLKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLF 1975
            G G + E +KA   PP+F+ WI QCI +  +SI ++  + G  K  +GLR GDP+SP LF
Sbjct: 601  GWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLF 660

Query: 1974 VICMEYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIET 1795
            VI ME LSR+L+         +H K   + ++ +  ADD+++F  G   S+  +   +E+
Sbjct: 661  VIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLES 720

Query: 1794 FTNASRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCE 1615
            F N S L+ N  +S +++A ++    ED  +A G+  G+  FRYLG+ +  +++   D  
Sbjct: 721  FKNLSGLEMNTEKSAVYTAGLEDTDKED-TLAFGFVNGTFPFRYLGLPLLHRKLRRSDYS 779

Query: 1614 ILNDKLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFL 1435
             L DK++AR   W++++LS+AGR+QLI+SV+    ++W S FILPK  +K +  +C  FL
Sbjct: 780  QLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFL 839

Query: 1434 W 1432
            W
Sbjct: 840  W 840



 Score =  173 bits (438), Expect(3) = 2e-90
 Identities = 92/259 (35%), Positives = 154/259 (59%), Gaps = 6/259 (2%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            L QKS+V W+   D NT FFH ++ ARR  N +  + D   +      +     ++ + +
Sbjct: 350  LCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKE 409

Query: 2720 LLGTSKDDREHVCSSV-VQQGKTVS-----EDHKGMLVQSVTAKEIKTALWSIHGEKASG 2559
            L G+S     H+ S+  + Q  +++     E+ + +L   V+  +IK+  +++   K+ G
Sbjct: 410  LFGSSS----HLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPG 465

Query: 2558 PDCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPI 2379
            PD + S  FK +W IVG  +I  VQ FFR+  +L   N+T +T++PK  +AD + +FRPI
Sbjct: 466  PDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPI 525

Query: 2378 SCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT* 2199
            SCCN IY VISK++  RL  +LP  IS +Q+ FV+GR + +N+L+  +LV+ + + N + 
Sbjct: 526  SCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISS 585

Query: 2198 SCLIKIDLKKAYDSMEWEF 2142
              ++K+DL+KA+DS+ W F
Sbjct: 586  RGVLKVDLRKAFDSVGWGF 604



 Score = 36.2 bits (82), Expect(3) = 2e-90
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYE 1217
            PK  GGL + N    N+   ++ +W +  + D+LWV W +   ++  ++W  E
Sbjct: 860  PKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAE 912


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  176 bits (446), Expect(3) = 2e-89
 Identities = 89/246 (36%), Positives = 148/246 (60%)
 Frame = -3

Query: 2130 MKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLS 1951
            ++AL  P ++I WI QCI TP ++I++N    G  +  +GLR GDP+SP LFV+ ME  S
Sbjct: 470  LRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFS 529

Query: 1950 RILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQ 1771
            ++L    +     +H K   + ++H+  ADD+++F  G   S+  +   ++ F + S L+
Sbjct: 530  KLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLK 589

Query: 1770 TNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
             N  +S +F A +D  S      A G+  G+   RYLG+ +  +++   D   L +KLSA
Sbjct: 590  VNKDKSQLFQAGLD-LSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSA 648

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R+++W S++LS+AGR QLI+SV+  + ++W S F+LPK  +K++ ++C  FLW G  + R
Sbjct: 649  RLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGR 708

Query: 1410 KVSLVA 1393
            K S V+
Sbjct: 709  KSSKVS 714



 Score =  171 bits (433), Expect(3) = 2e-89
 Identities = 87/257 (33%), Positives = 153/257 (59%), Gaps = 6/257 (2%)
 Frame = -1

Query: 2894 QKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQLL 2715
            Q+S+V+W  + D NT +FH ++ +R++ N++ ++ D    +    Q   +  +  Y +LL
Sbjct: 214  QRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLL 273

Query: 2714 GTSKDDREHVCSSVVQQGKTV------SEDHKGMLVQSVTAKEIKTALWSIHGEKASGPD 2553
            G+ +        S+ Q+   +      S+D    L +S T  EIK A  S+   K SGPD
Sbjct: 274  GSIESP-----FSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPD 328

Query: 2552 CFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISC 2373
             +    F+D+W I+G +V+  +  FF +  +L+  N T + +IPK+ +A  + +FRPISC
Sbjct: 329  GYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISC 388

Query: 2372 CNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SC 2193
             NT+Y VISK++ +RL+ +L  +I  +Q+ F+ GR++ +N+L+  ++V  Y R N +   
Sbjct: 389  LNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRG 448

Query: 2192 LIKIDLKKAYDSMEWEF 2142
            ++K+DLKKA+DS++WEF
Sbjct: 449  MLKVDLKKAFDSVKWEF 465



 Score = 33.5 bits (75), Expect(3) = 2e-89
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWW 1226
            PK+ GGL   +    N+  +++ +W +  +  +LW +W  H  +  A +W
Sbjct: 721  PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  176 bits (446), Expect(3) = 2e-89
 Identities = 89/246 (36%), Positives = 148/246 (60%)
 Frame = -3

Query: 2130 MKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLS 1951
            ++AL  P ++I WI QCI TP ++I++N    G  +  +GLR GDP+SP LFV+ ME  S
Sbjct: 470  LRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFS 529

Query: 1950 RILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQ 1771
            ++L    +     +H K   + ++H+  ADD+++F  G   S+  +   ++ F + S L+
Sbjct: 530  KLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLK 589

Query: 1770 TNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
             N  +S +F A +D  S      A G+  G+   RYLG+ +  +++   D   L +KLSA
Sbjct: 590  VNKDKSQLFQAGLD-LSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSA 648

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R+++W S++LS+AGR QLI+SV+  + ++W S F+LPK  +K++ ++C  FLW G  + R
Sbjct: 649  RLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGR 708

Query: 1410 KVSLVA 1393
            K S V+
Sbjct: 709  KSSKVS 714



 Score =  171 bits (433), Expect(3) = 2e-89
 Identities = 87/257 (33%), Positives = 153/257 (59%), Gaps = 6/257 (2%)
 Frame = -1

Query: 2894 QKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQLL 2715
            Q+S+V+W  + D NT +FH ++ +R++ N++ ++ D    +    Q   +  +  Y +LL
Sbjct: 214  QRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLL 273

Query: 2714 GTSKDDREHVCSSVVQQGKTV------SEDHKGMLVQSVTAKEIKTALWSIHGEKASGPD 2553
            G+ +        S+ Q+   +      S+D    L +S T  EIK A  S+   K SGPD
Sbjct: 274  GSIESP-----FSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPD 328

Query: 2552 CFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISC 2373
             +    F+D+W I+G +V+  +  FF +  +L+  N T + +IPK+ +A  + +FRPISC
Sbjct: 329  GYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISC 388

Query: 2372 CNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SC 2193
             NT+Y VISK++ +RL+ +L  +I  +Q+ F+ GR++ +N+L+  ++V  Y R N +   
Sbjct: 389  LNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRG 448

Query: 2192 LIKIDLKKAYDSMEWEF 2142
            ++K+DLKKA+DS++WEF
Sbjct: 449  MLKVDLKKAFDSVKWEF 465



 Score = 33.5 bits (75), Expect(3) = 2e-89
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWW 1226
            PK+ GGL   +    N+  +++ +W +  +  +LW +W  H  +  A +W
Sbjct: 721  PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  191 bits (486), Expect(3) = 8e-88
 Identities = 100/252 (39%), Positives = 144/252 (57%), Gaps = 1/252 (0%)
 Frame = -3

Query: 2130 MKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLS 1951
            ++A   P   I WI  CI++ ++S+ +N  + G     RGLR GDP+SP LFVI ME LS
Sbjct: 437  LQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLS 496

Query: 1950 R-ILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRL 1774
              I +R+   P F +H +C  + L+H+  ADD+L+FC G+  SV  L      F + S L
Sbjct: 497  LCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSL 556

Query: 1773 QTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLS 1594
            + N  ES IF A +D  S + +   T +  G+   RYLG+ +   ++   DC  L D++ 
Sbjct: 557  KANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIE 616

Query: 1593 ARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEI 1414
             R+K+W ++ LS+AGR+QLI SVL  I  YW+S  ILPKKV+K +    R FLW G    
Sbjct: 617  TRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSG 676

Query: 1413 RKVSLVACDLVC 1378
            R  + VA   +C
Sbjct: 677  RAATKVAWSEIC 688



 Score =  143 bits (360), Expect(3) = 8e-88
 Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 1/254 (0%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            LK+KS+V W+ + D+N+ FF   +   RN N + TI                        
Sbjct: 222  LKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATI------------------------ 257

Query: 2720 LLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRS 2541
                ++ D   +  S               L    T  +I+   +S++  K+ GPD F  
Sbjct: 258  ----NRSDGPDLAKS---------------LCNEFTHDDIRAVFFSMNPNKSPGPDGFNG 298

Query: 2540 RIFKDSWDIVGADVIGV-VQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNT 2364
              F+ +W ++G +V+   V+ FF   ++L  LN+T+IT++PK  +   + DFRPISCCNT
Sbjct: 299  CFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNT 358

Query: 2363 IYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIK 2184
             Y +I+K++ NRL+  L  I+  +Q+TF+ GR IG NIL+ Q+++  Y + +    C   
Sbjct: 359  FYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFM 418

Query: 2183 IDLKKAYDSMEWEF 2142
            +D+ KA D++EW+F
Sbjct: 419  VDMMKANDTVEWDF 432



 Score = 40.8 bits (94), Expect(3) = 8e-88
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWW 1226
            PK  GGL + +    N+A +I ++WN+   + N W  WV    +K   +W
Sbjct: 690  PKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFW 739


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  175 bits (443), Expect(3) = 5e-87
 Identities = 90/251 (35%), Positives = 152/251 (60%)
 Frame = -3

Query: 2130 MKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLS 1951
            ++AL  P KFI WI QCI+TP +++++N G  G  K  +GLR GDP+SP LFV+ ME  S
Sbjct: 610  LRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFS 669

Query: 1950 RILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQ 1771
             +L    E     +H K  ++ ++H+  ADD+++F  G   S+  +   ++ F + S L+
Sbjct: 670  NLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLK 729

Query: 1770 TNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
             N  +S+++ A ++ Q   +   A G+  G+L  RYLG+ +  +++   + E L +K++A
Sbjct: 730  VNKDKSHLYLAGLN-QLESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITA 788

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R ++W ++ LS+AGR+QLI+SV+    ++W S F+LPK  +KR+ ++C  FLW G  E  
Sbjct: 789  RFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQA 848

Query: 1410 KVSLVACDLVC 1378
            K   V+   +C
Sbjct: 849  KGIKVSWAALC 859



 Score =  162 bits (411), Expect(3) = 5e-87
 Identities = 87/253 (34%), Positives = 146/253 (57%), Gaps = 1/253 (0%)
 Frame = -1

Query: 2897 KQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQL 2718
            +QKS+++W  + D NTK+FH +  AR ++NS+  + D   ++    +   +     +  L
Sbjct: 353  RQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSL 412

Query: 2717 LGTSKDDREHVCSSV-VQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRS 2541
            LG   D      + + +      S      L  + + ++I+ AL+S+   K+ GPD F +
Sbjct: 413  LGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTA 472

Query: 2540 RIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNTI 2361
              F DSW IVGA+V   ++ FF +  +L+  N T I +IPK  +     DFRPISC NT+
Sbjct: 473  EFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTL 532

Query: 2360 YMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIKI 2181
            Y VI++++ +RL+++L  +IS  Q+ F+ GR++ +N+L+  DLV  Y   N +   ++K+
Sbjct: 533  YKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKV 592

Query: 2180 DLKKAYDSMEWEF 2142
            DLKKA+DS+ WEF
Sbjct: 593  DLKKAFDSVRWEF 605



 Score = 35.0 bits (79), Expect(3) = 5e-87
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYE 1217
            PK+ GGL +   +  N+   ++ +W +    D+LW  W +  ++    +W  E
Sbjct: 861  PKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVE 913


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  171 bits (432), Expect(3) = 6e-87
 Identities = 90/261 (34%), Positives = 150/261 (57%), Gaps = 8/261 (3%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIK-------DFKRQVHSEPQQAANA 2742
            LKQKSK++W+   D N  +FH   + R+  NS+  I+           ++  E ++  N 
Sbjct: 654  LKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNE 713

Query: 2741 FIELYT-QLLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKA 2565
            F+   +    G S +D  ++ S         S   + +L + VT +EI+  L+++   K+
Sbjct: 714  FLNRQSGDFHGISVEDLRNLMSY------RCSVTDQNILTREVTGEEIQKVLFAMPNNKS 767

Query: 2564 SGPDCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFR 2385
             GPD + S  FK +W + G D I  +Q FF    + + LN T++ +IPK   A  + D+R
Sbjct: 768  PGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYR 827

Query: 2384 PISCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNF 2205
            PISCCN +Y VISK++ NRL+ +LP+ I  NQ+ FV+ R + +N+L+  +LV+ Y +++ 
Sbjct: 828  PISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESV 887

Query: 2204 T*SCLIKIDLKKAYDSMEWEF 2142
            T  C +KID+ KA+DS++W+F
Sbjct: 888  TPRCAMKIDISKAFDSVQWQF 908



 Score =  162 bits (409), Expect(3) = 6e-87
 Identities = 85/255 (33%), Positives = 136/255 (53%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L   ++AL FP  F  WI  CI+T  +S+ +N  + G     RGLR G  +SP LFVICM
Sbjct: 909  LLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICM 968

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
              LS ++          +H KC  IGL H+  ADD+++F  G+  S+  ++   + F   
Sbjct: 969  NVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGR 1028

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S LQ +  +S I+ A +          +  +  G L  RYLG+ +  K++ T D   L +
Sbjct: 1029 SGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIE 1088

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
             +  ++ +W++RSLSYAGR+ L+NSV++ I ++W S + LP   ++ +  +C  FLW G 
Sbjct: 1089 AVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGP 1148

Query: 1422 EEIRKVSLVACDLVC 1378
                K + +A   +C
Sbjct: 1149 VLNPKKAKIAWSSIC 1163



 Score = 39.7 bits (91), Expect(3) = 6e-87
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWT 1223
            QPK  GGL + +    N+ + +K +W +     +LWV W+    I++  +W+
Sbjct: 1164 QPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWS 1215


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  169 bits (429), Expect(3) = 1e-86
 Identities = 86/242 (35%), Positives = 140/242 (57%), Gaps = 2/242 (0%)
 Frame = -1

Query: 2861 DQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQLLGTSKDDREHVC 2682
            D+N K FH  +  R   NS+  I      V +  Q      +  +   L T   D E +C
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMC 150

Query: 2681 SSVVQQ--GKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRSRIFKDSWDIVG 2508
               ++       SED   +L + VT +EIK  ++S+  +K+ GPD + S  +K SW+I+G
Sbjct: 151  VEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIG 210

Query: 2507 ADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNTIYMVISKVMCNR 2328
             +VI  +Q FF    + + +N+T++ +IPK K A  + D+RPISCCN +Y  ISK++ NR
Sbjct: 211  DEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANR 270

Query: 2327 LRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIKIDLKKAYDSMEW 2148
            L+++LP  I  NQ+ FV+ R + +N+L+  +LV+ Y + + +  C +KID+ KA+DS++W
Sbjct: 271  LKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQW 330

Query: 2147 EF 2142
             F
Sbjct: 331  SF 332



 Score =  161 bits (408), Expect(3) = 1e-86
 Identities = 87/255 (34%), Positives = 143/255 (56%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L  ++ A+ FP +FI WI  C++T  +SI +N  + G  +  RGLR G  +SP LFVI M
Sbjct: 333  LTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISM 392

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
            + LSR+L +      F +H +C+++GL H+  ADD+++   G  +SV  +++ +  F   
Sbjct: 393  DVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAK 452

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
              L+    ++ ++ A +   S + +     +  G L  RYLG+ +  KR+ T D   L D
Sbjct: 453  LGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLID 512

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            ++  R+  W+SR LS+AGR+ LINSVL  I ++W + F LP++ +  +  I    LW G 
Sbjct: 513  QIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGP 572

Query: 1422 EEIRKVSLVACDLVC 1378
            E   K + V+ D +C
Sbjct: 573  ELNPKKAKVSWDEIC 587



 Score = 40.4 bits (93), Expect(3) = 1e-86
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWT 1223
            +PK  GGL + +    N+ + +K +W +    D+LWVKW     +K+  +W+
Sbjct: 588  KPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWS 639


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  170 bits (431), Expect(3) = 1e-86
 Identities = 87/251 (34%), Positives = 146/251 (58%)
 Frame = -3

Query: 2130 MKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLS 1951
            + A+ FP  FI WI  CI TP +S+ +N  + G  +  RGLR G  +SP LFVICM+ LS
Sbjct: 169  LTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLS 228

Query: 1950 RILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQ 1771
            ++L +V  +    +H  C+ +GL H+  ADD+++   G  +S+  ++   + F+  S L+
Sbjct: 229  KLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLK 288

Query: 1770 TNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
             +  +S IFSA +   S   +     ++ G L  RYLG+ +  KR+++VD   L +++  
Sbjct: 289  ISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRK 348

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R+ +WSSR LS+AGR  LI+S++    ++W S F LP+  ++ +  +C +FLW G     
Sbjct: 349  RIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNS 408

Query: 1410 KVSLVACDLVC 1378
            K + ++ + VC
Sbjct: 409  KKAKISWNQVC 419



 Score =  152 bits (384), Expect(3) = 1e-86
 Identities = 71/164 (43%), Positives = 113/164 (68%)
 Frame = -1

Query: 2633 MLVQSVTAKEIKTALWSIHGEKASGPDCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLR 2454
            ML + V+A+EIK  L+S+  +K+ GPD F S  FK+SW+I+G + I  +Q FF    + +
Sbjct: 1    MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60

Query: 2453 VLNNTLITIIPKSKHADGVGDFRPISCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVE 2274
             +N+T++ +IPK   +  + D+RPISCCN +Y VISK++ NRL+ +LP  I+ NQ++FV+
Sbjct: 61   GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120

Query: 2273 GRTIGQNILICQDLVRVYKRKNFT*SCLIKIDLKKAYDSMEWEF 2142
             R + +N+L+  DLV+ Y + + +  C IKID+ KA DS++W F
Sbjct: 121  DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSF 164



 Score = 48.9 bits (115), Expect(3) = 1e-86
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYEPSVN 1205
            +PK+ GGL + +    N+   +K VW I    D+LWVKWV H  +K   +W  + + N
Sbjct: 420  KPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENAN 477


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  175 bits (443), Expect(2) = 1e-84
 Identities = 90/255 (35%), Positives = 152/255 (59%), Gaps = 2/255 (0%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            LKQ+SK++W+   D+N K FH  + AR   NS+  I      V S+ ++        + +
Sbjct: 245  LKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFRE 304

Query: 2720 LLGTSKDDREHVCSSVVQQ--GKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCF 2547
             L    +D E +    +Q       S+  K ML   V+A+EI   ++S+  +K+ GPD +
Sbjct: 305  FLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGY 364

Query: 2546 RSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCN 2367
             +  +K +W+I+GA+ I  +Q FF    + + +N+T++ +IPK K A  + D+RPISCCN
Sbjct: 365  TAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCN 424

Query: 2366 TIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLI 2187
             +Y VISK++ NRL+ VLP  I  NQ+ FV+ R + +N+L+  ++V+ Y + + +  C +
Sbjct: 425  VLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCAL 484

Query: 2186 KIDLKKAYDSMEWEF 2142
            KID+ KA+DS++W+F
Sbjct: 485  KIDISKAFDSVQWKF 499



 Score =  168 bits (425), Expect(2) = 1e-84
 Identities = 86/255 (33%), Positives = 146/255 (57%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L  +++A+ FPP+F  WI  CI T  +S+ +N  + G     R LR G  +SP LFVI M
Sbjct: 500  LINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISM 559

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
            + LS++L +      F +H KCR+IGL H+  ADD+++   G  +S+  +++ +  F   
Sbjct: 560  DVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKW 619

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L+ +  +S ++ A +     ++I     +  G L  RYLG+ + +KR+   DC  L +
Sbjct: 620  SGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIE 679

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            +L  +++AW+SR LS+AGR+ LI+S L  I ++W + F LP+  ++ +  +C  FLW G 
Sbjct: 680  QLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGT 739

Query: 1422 EEIRKVSLVACDLVC 1378
            E     + V+ + +C
Sbjct: 740  ELSSNKAKVSWEAIC 754


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  172 bits (436), Expect(3) = 3e-84
 Identities = 87/255 (34%), Positives = 143/255 (56%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L   + A+ F P FI WI  CI T  +S+ +N  + G  +  RGLR G  +SP LFVICM
Sbjct: 259  LTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICM 318

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
            + LS++L +   +  F FH KC+ +GL H+  ADD+++   G  +S+  +L   + F   
Sbjct: 319  DVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKR 378

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L+ +  +S ++ A + P   ++I     +  G L  RYLG+ +  KR+ + D   L +
Sbjct: 379  SGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLE 438

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            ++  R+  W+ R  S+AGR  LI SVL  I ++W + F LP++ ++ +  +C +FLW G 
Sbjct: 439  QIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGS 498

Query: 1422 EEIRKVSLVACDLVC 1378
            E     + ++ D+VC
Sbjct: 499  EMSSHKAKISWDIVC 513



 Score =  147 bits (371), Expect(3) = 3e-84
 Identities = 68/164 (41%), Positives = 112/164 (68%)
 Frame = -1

Query: 2633 MLVQSVTAKEIKTALWSIHGEKASGPDCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLR 2454
            ML + V+++EIKT L+S+  +K+ GPD + S  +K +WDI+G +    VQ FF+   + +
Sbjct: 95   MLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPK 154

Query: 2453 VLNNTLITIIPKSKHADGVGDFRPISCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVE 2274
             +N+ ++ +IPK   A  + D+RPISCCN +Y VISK++ NRL+ +LP  I+ NQ+ FV+
Sbjct: 155  GINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVK 214

Query: 2273 GRTIGQNILICQDLVRVYKRKNFT*SCLIKIDLKKAYDSMEWEF 2142
             R + +N+L+  +LV+ Y + + +  C IKID+ KA+DS++W F
Sbjct: 215  DRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSF 258



 Score = 43.9 bits (102), Expect(3) = 3e-84
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWTYEPSVN 1205
            +PK  GGL + N    N+ + +K VW I   +++LW KWV    I++   W+ + S +
Sbjct: 514  KPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTS 571


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  166 bits (419), Expect(3) = 1e-83
 Identities = 86/251 (34%), Positives = 145/251 (57%)
 Frame = -3

Query: 2130 MKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLS 1951
            ++AL  P KF  WI++C++T  +S+ LN    G     +GLR GDP+SP LFV+ ME  S
Sbjct: 507  LRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFS 566

Query: 1950 RILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQ 1771
             +L+         +H K   + ++H+  ADD+++F  G   S+  ++  +E F   S L 
Sbjct: 567  GLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLL 626

Query: 1770 TNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
             N  ++ ++ A +  QS  D   + G++ GSL  RYLG+ + ++++   +   L +K++A
Sbjct: 627  MNTNKTQLYHAGLS-QSESDSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITA 685

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R  +W  R LS+AGRVQL+ SV+  I ++W S FILP   +K++ ++C  FLW  + + +
Sbjct: 686  RFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKK 745

Query: 1410 KVSLVACDLVC 1378
             ++ VA   VC
Sbjct: 746  GIAKVAWSQVC 756



 Score =  165 bits (418), Expect(3) = 1e-83
 Identities = 89/258 (34%), Positives = 143/258 (55%), Gaps = 7/258 (2%)
 Frame = -1

Query: 2894 QKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQLL 2715
            Q+S+VNW+ + D N+ +FH +  AR++ N +  + D         Q   N  +E +   L
Sbjct: 251  QRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNL 310

Query: 2714 GTSKD-------DREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGP 2556
            G+ +        D  ++ S      + VS D         ++++IK A +S+   KASGP
Sbjct: 311  GSEQGLPLFEQADISNLLSYRCSPAQQVSLD------TPFSSEQIKNAFFSLPRNKASGP 364

Query: 2555 DCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPIS 2376
            D F    F   W I+G +V   +  FF +  +L+  N T + +IPK  +A  + DFRPIS
Sbjct: 365  DGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPIS 424

Query: 2375 CCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*S 2196
            C NT+Y VISK++ +RL+  LP  IS +Q+ F+ GR   +N+L+  +LV  Y +KN   S
Sbjct: 425  CLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPS 484

Query: 2195 CLIKIDLKKAYDSMEWEF 2142
             ++K+DL+KA+DS+ W+F
Sbjct: 485  SMLKVDLRKAFDSVRWDF 502



 Score = 30.4 bits (67), Expect(3) = 1e-83
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKW-VNHVYIKEADWW 1226
            PK  GG+ +    V N    ++ +W +   + +LWV W   H   K   +W
Sbjct: 758  PKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFW 808


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  161 bits (408), Expect(3) = 4e-82
 Identities = 91/255 (35%), Positives = 139/255 (54%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L   + AL  P KFI WI  CI+T  +S+ +N           GLR G  +SP LFVICM
Sbjct: 878  LLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLRQGCSLSPYLFVICM 926

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
              LS +L +      F +H +CR++GL H+  ADD+++F  G+  S+  +L   + F   
Sbjct: 927  NVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAF 986

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L  +  +S +F A++  ++   I     +  GSL  RYLG+ +  KR+   DC  L +
Sbjct: 987  SGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLE 1046

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            K+ +R+ +W +R LSYAGR+QL+NSV+  +  +W S F LP+  ++ +  I   FLW G 
Sbjct: 1047 KIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGT 1106

Query: 1422 EEIRKVSLVACDLVC 1378
            +     + VA   VC
Sbjct: 1107 DLNPHKAKVAWHDVC 1121



 Score =  137 bits (346), Expect(3) = 4e-82
 Identities = 61/166 (36%), Positives = 105/166 (63%)
 Frame = -1

Query: 2639 KGMLVQSVTAKEIKTALWSIHGEKASGPDCFRSRIFKDSWDIVGADVIGVVQYFFRARNM 2460
            + +LV  +T  E+    +SI   K+ GPD +    F+++W ++G +V   ++ FF    +
Sbjct: 712  QNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFL 771

Query: 2459 LRVLNNTLITIIPKSKHADGVGDFRPISCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTF 2280
             + LN+T++ +IPK  +A  + D+RPISCCN +Y  ISK++ NRL+ +LP  I+ NQ+ F
Sbjct: 772  PKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAF 831

Query: 2279 VEGRTIGQNILICQDLVRVYKRKNFT*SCLIKIDLKKAYDSMEWEF 2142
            +  R + +N+L+  +LV+ Y +   +  C +KIDL KA+DS++W F
Sbjct: 832  ISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPF 877



 Score = 57.0 bits (136), Expect(3) = 4e-82
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 13/239 (5%)
 Frame = -2

Query: 1378 QPKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEA-------DWWTY 1220
            +PK+ GGL + + +  N+    K +W +     +LWV W+ +  I+            ++
Sbjct: 1122 KPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIRTVAEALSSHRRRSH 1181

Query: 1219 EPSVNXXXXXXXXXXXXXXXKDGYVGNGWQMADGQYSIKS------HYSWRRGAMETWQA 1058
               +                      +  +   GQ+  K       H    +G ++ W  
Sbjct: 1182 RDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWHQIREQGLVKQWH- 1240

Query: 1057 SK*TWSTMNIPKHCFISCLAGHNRLLTRQKLKRIGIIDDDKCGLCGEDVEKMKHLLFECS 878
             K  W +   PK  FIS LA H+RL T  K+          C LC    E   HL F C+
Sbjct: 1241 -KAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSCN 1299

Query: 877  FSKKCLCNMLLWMGLGVQNTELLGLWSRMTIYKKGRNKREFIATVLVALIYNI*RARNE 701
            FS      +   + L    T    L   ++       KR  +  V  A I+ + R RN+
Sbjct: 1300 FSSHIWDRLTRRLLLCRYTTNFPALLLLLSGQDFSGTKRFLLRYVFQATIHTLWRERNK 1358


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  164 bits (415), Expect(3) = 8e-81
 Identities = 89/259 (34%), Positives = 150/259 (57%), Gaps = 8/259 (3%)
 Frame = -1

Query: 2894 QKSKVNWITQVDQNTKFFHVVLKARRNTNSV-FTIKDFKRQVHSEP-------QQAANAF 2739
            QKS ++W+ + D NT +FH +   R++ N++ F I DF  ++ ++        + + N F
Sbjct: 351  QKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFF 410

Query: 2738 IELYTQLLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASG 2559
              L   L G   ++        +      S D    L +S +  +I+ A +S+   KASG
Sbjct: 411  ESL---LCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASG 467

Query: 2558 PDCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPI 2379
            PD + S  FK  W +VG +V   VQ FFR+  +L+  N T + +IPK  ++  + DFRPI
Sbjct: 468  PDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPI 527

Query: 2378 SCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT* 2199
            SC NT+Y VI+K++ +RL+K+L  +IS +Q+ F+ GR + +N+L+  ++V  Y  KN + 
Sbjct: 528  SCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISS 587

Query: 2198 SCLIKIDLKKAYDSMEWEF 2142
              ++K+DL+KA+DS+ W+F
Sbjct: 588  RGMLKVDLRKAFDSVRWDF 606



 Score =  162 bits (410), Expect(3) = 8e-81
 Identities = 84/251 (33%), Positives = 146/251 (58%), Gaps = 1/251 (0%)
 Frame = -3

Query: 2127 KALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLSR 1948
            +AL  P KF+ WI QCI+TP +S+ +N    G  K  +GLR GDP+SP LFV+ ME  S 
Sbjct: 612  RALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSS 671

Query: 1947 ILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQT 1768
            +LK   +    ++H K   + ++H+  ADD+++F  G   S+  +   ++ F + S L  
Sbjct: 672  LLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHV 731

Query: 1767 NAGESNIFSANMDPQSLEDICVA-TGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
            N  ++N++ A  D   +E + ++  G+   +L  RYLG+ + ++++   + E++      
Sbjct: 732  NKDKTNLYLAGTD--EVEALAISHYGFPISTLPIRYLGLPLMSRKLKISEYELVK----- 784

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R ++W+ +SLS+AGRVQLI SV+  + ++W S F+L    +K++ ++C  FLW G  +  
Sbjct: 785  RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDAS 844

Query: 1410 KVSLVACDLVC 1378
            K + +A   VC
Sbjct: 845  KGAKIAWSGVC 855



 Score = 25.4 bits (54), Expect(3) = 8e-81
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLW 1271
            PKN GG+ +      N+   ++++W +    D LW
Sbjct: 857  PKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVLW 891


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  168 bits (425), Expect(3) = 1e-80
 Identities = 88/258 (34%), Positives = 142/258 (55%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L   ++AL FP  F  WI  CI+T  +S+ +N  + G     RGLR G  +SP LFVICM
Sbjct: 185  LLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICM 244

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
              LS ++          +H KC+ + L H+  ADD+++F  G  +SV  ++   + F   
Sbjct: 245  NVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGK 304

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L  +  +S ++ A +   +  +I  A  +  G L  RYLG+ +  K++ T D   L D
Sbjct: 305  SGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLD 364

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            K+ +++ +W++RSLSYAGR+ LINSV++ + ++W S + LP   +K +  +C  FLW G 
Sbjct: 365  KVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGP 424

Query: 1422 EEIRKVSLVACDLVCSLR 1369
            E   K + +    +C L+
Sbjct: 425  ELNPKKAKITWTSLCKLK 442



 Score =  144 bits (362), Expect(3) = 1e-80
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -1

Query: 2651 SEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRSRIFKDSWDIVGADVIGVVQYFFR 2472
            S   + ML + VT++E +  L+++   K  GPD + S  FK +W I G D I  ++ FF 
Sbjct: 15   SATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFI 74

Query: 2471 ARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNTIYMVISKVMCNRLRKVLPTIIS*N 2292
               + + LN T++ +IPK   A  + D+RPISCCN IY VISK++ NRL+ +LPT I  N
Sbjct: 75   KGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQN 134

Query: 2291 QNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIKIDLKKAYDSMEWEF 2142
            Q+ FV  R + +N+L+  +LV+ Y + + +  C +KID+ KA+DS++W+F
Sbjct: 135  QSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQF 184



 Score = 39.3 bits (90), Expect(3) = 1e-80
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -2

Query: 1372 KNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWT 1223
            K  GGL + + +  N+ + +K +W +  +  +LWV WV    I++  +W+
Sbjct: 442  KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWS 491


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  164 bits (415), Expect(3) = 2e-80
 Identities = 89/259 (34%), Positives = 150/259 (57%), Gaps = 8/259 (3%)
 Frame = -1

Query: 2894 QKSKVNWITQVDQNTKFFHVVLKARRNTNSV-FTIKDFKRQVHSEP-------QQAANAF 2739
            QKS ++W+ + D NT +FH +   R++ N++ F I DF  ++ ++        + + N F
Sbjct: 351  QKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFF 410

Query: 2738 IELYTQLLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASG 2559
              L   L G   ++        +      S D    L +S +  +I+ A +S+   KASG
Sbjct: 411  ESL---LCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASG 467

Query: 2558 PDCFRSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPI 2379
            PD + S  FK  W +VG +V   VQ FFR+  +L+  N T + +IPK  ++  + DFRPI
Sbjct: 468  PDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPI 527

Query: 2378 SCCNTIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT* 2199
            SC NT+Y VI+K++ +RL+K+L  +IS +Q+ F+ GR + +N+L+  ++V  Y  KN + 
Sbjct: 528  SCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISS 587

Query: 2198 SCLIKIDLKKAYDSMEWEF 2142
              ++K+DL+KA+DS+ W+F
Sbjct: 588  RGMLKVDLRKAFDSVRWDF 606



 Score =  161 bits (408), Expect(3) = 2e-80
 Identities = 84/251 (33%), Positives = 145/251 (57%), Gaps = 1/251 (0%)
 Frame = -3

Query: 2127 KALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICMEYLSR 1948
            +AL  P KF+ WI QCI+TP +S+ +N    G  K  +GLR GDP+SP LFV+ ME  S 
Sbjct: 612  RALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSS 671

Query: 1947 ILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNASRLQT 1768
            +LK   +     +H K   + ++H+  ADD+++F  G   S+  +   ++ F + S L  
Sbjct: 672  LLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHV 731

Query: 1767 NAGESNIFSANMDPQSLEDICVA-TGYQRGSLLFRYLGVLVSAKRINTVDCEILNDKLSA 1591
            N  ++N++ A  D   +E + ++  G+   +L  RYLG+ + ++++   + E++      
Sbjct: 732  NKDKTNLYLAGTD--EVEALAISHYGFPISTLPIRYLGLPLMSRKLKISEYELVK----- 784

Query: 1590 RVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGKEEIR 1411
            R ++W+ +SLS+AGRVQLI SV+  + ++W S F+L    +K++ ++C  FLW G  +  
Sbjct: 785  RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDAS 844

Query: 1410 KVSLVACDLVC 1378
            K + +A   VC
Sbjct: 845  KGAKIAWSGVC 855



 Score = 25.0 bits (53), Expect(3) = 2e-80
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 1375 PKNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLW 1271
            PKN GG+ +      N+   ++++W +    D LW
Sbjct: 857  PKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVLW 891


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  168 bits (426), Expect(3) = 3e-79
 Identities = 92/258 (35%), Positives = 145/258 (56%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L  ++KA+  P  FI WI  CI T  +S+ +N  + G  +  RGLR G  +SP L+VICM
Sbjct: 759  LINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICM 818

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
              LS +L +        +H +CR++ L H+  ADD+++F  G  +S+   L   E F   
Sbjct: 819  NVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAM 878

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L+ +  +S IF A + P +   I     ++ G+L  +YLG+ +  KR+   D   L +
Sbjct: 879  SWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVE 938

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            K+ AR+ +W++R LS+AGR+QLI SVL  I ++W S+F LPK  ++ +  +   FLW G 
Sbjct: 939  KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGP 998

Query: 1422 EEIRKVSLVACDLVCSLR 1369
            +   K + +A   VC L+
Sbjct: 999  DLNTKKAKIAWSEVCKLK 1016



 Score =  134 bits (337), Expect(3) = 3e-79
 Identities = 75/253 (29%), Positives = 129/253 (50%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            L+QKSK++W+   D+N K+FH  +KAR   NS+  I+    +V                 
Sbjct: 561  LQQKSKLHWLDVGDKNNKYFHNSVKARVAMNSIREIQCTDGRVC---------------- 604

Query: 2720 LLGTSKDDREHVCSSVVQQGKTVSEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCFRS 2541
               TS DD              + E+                        K+ GPD +  
Sbjct: 605  ---TSHDD--------------IKEE----------------------AHKSPGPDGYTV 625

Query: 2540 RIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCNTI 2361
              FK +W ++G D++  +Q FF    + + +N T++ +I K     G+ D+RPISCCN +
Sbjct: 626  EFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVL 685

Query: 2360 YMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLIKI 2181
            Y ++SK+M NRL+++LP  I+ NQ+ F++ R + +N+L+  +LV+ Y +++ +    +KI
Sbjct: 686  YKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKI 745

Query: 2180 DLKKAYDSMEWEF 2142
            D+ KA+D ++W F
Sbjct: 746  DISKAFDFVQWPF 758



 Score = 43.9 bits (102), Expect(3) = 3e-79
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 1372 KNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWT 1223
            K  GGL +      NE +++K +W I    D+LWVKWVN   I++  +W+
Sbjct: 1016 KEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWS 1065


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  166 bits (421), Expect(3) = 3e-78
 Identities = 89/258 (34%), Positives = 141/258 (54%)
 Frame = -3

Query: 2142 LKEMMKALGFPPKFIAWIMQCINTPQYSIALN*GVYGSIKEGRGLR*GDPVSPLLFVICM 1963
            L   ++AL FP KF  WI  CI+T  +S+ +N    G     RGLR G  +SP LFVICM
Sbjct: 754  LLNTLEALKFPEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICM 813

Query: 1962 EYLSRILKRVGELPGFEFHTKCRSIGLNHMYVADDMLLFCKGNYQSVMLLLRGIETFTNA 1783
              LS ++          +H KC+ + L H+  ADD+++F  G  +SV  ++   + F   
Sbjct: 814  NVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGK 873

Query: 1782 SRLQTNAGESNIFSANMDPQSLEDICVATGYQRGSLLFRYLGVLVSAKRINTVDCEILND 1603
            S L  +  +S ++ A +   +  +I  A  +  G L  RYLG  +  K++ T D   L D
Sbjct: 874  SGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLD 933

Query: 1602 KLSARVKAWSSRSLSYAGRVQLINSVLLHIHSYWSSIFILPKKVMKRLTAICRNFLWDGK 1423
            K+ +++ +W++RSLSYAGR+ LINSV++ + ++W S + LP   +K +  +C  FLW G 
Sbjct: 934  KVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGP 993

Query: 1422 EEIRKVSLVACDLVCSLR 1369
            E   K + +    +C L+
Sbjct: 994  ELNPKKAKITWTSLCKLK 1011



 Score =  137 bits (346), Expect(3) = 3e-78
 Identities = 79/255 (30%), Positives = 131/255 (51%), Gaps = 2/255 (0%)
 Frame = -1

Query: 2900 LKQKSKVNWITQVDQNTKFFHVVLKARRNTNSVFTIKDFKRQVHSEPQQAANAFIELYTQ 2721
            +KQKSK++W+   D+N  +FH   + RR  NS+  I+     V    ++        + +
Sbjct: 529  MKQKSKLHWMKVGDRNNSYFHKAAQVRRMQNSIREIQGPNGVVLQTSEEIKGEAERFFQE 588

Query: 2720 LLGTSKDDREHVCSSVVQQGKTV--SEDHKGMLVQSVTAKEIKTALWSIHGEKASGPDCF 2547
             L     D + +    +Q   +   S   + ML + VT++EI+  L+++   K+ GPD +
Sbjct: 589  FLNHQPSDFQGMTVEELQNLMSFRCSATDQDMLTREVTSEEIQKVLFAMPSNKSPGPDGY 648

Query: 2546 RSRIFKDSWDIVGADVIGVVQYFFRARNMLRVLNNTLITIIPKSKHADGVGDFRPISCCN 2367
                                            LN T++ +IPK   A  + D+RPISCCN
Sbjct: 649  TR------------------------------LNATILALIPKKDEATLMRDYRPISCCN 678

Query: 2366 TIYMVISKVMCNRLRKVLPTIIS*NQNTFVEGRTIGQNILICQDLVRVYKRKNFT*SCLI 2187
             IY VISK++ NRL+ +LPT I  NQ+ FV  R + +N+L+  +LV+ Y + + +  C +
Sbjct: 679  VIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLMENVLLATELVKDYHKDSISPRCAM 738

Query: 2186 KIDLKKAYDSMEWEF 2142
            KID+ KA+DS++W+F
Sbjct: 739  KIDISKAFDSVQWQF 753



 Score = 39.3 bits (90), Expect(3) = 3e-78
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -2

Query: 1372 KNMGGLRVINCIV*NEAAVIKYVWNIAQKADNLWVKWVNHVYIKEADWWT 1223
            K  GGL + + +  N+ + +K +W +  +  +LWV WV    I++  +W+
Sbjct: 1011 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWS 1060