BLASTX nr result
ID: Atropa21_contig00017894
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00017894
(2251 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 132 e-102
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 106 2e-73
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 140 4e-71
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 108 5e-71
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 99 5e-71
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 99 5e-71
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 145 4e-69
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 104 7e-69
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 95 3e-67
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 100 1e-62
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 106 7e-61
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 94 3e-59
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 94 3e-59
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 86 7e-56
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 131 2e-55
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 86 2e-49
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 104 9e-49
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 82 1e-48
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 95 1e-48
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana] 87 7e-48
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 132 bits (331), Expect(5) = e-102
Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 15/351 (4%)
Frame = +1
Query: 1120 GDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLFSIQIF 1299
G LPFRYLGVPL++K+L+ QC PL+DKI R W A LSYAG+ QL+K++L+S+Q +
Sbjct: 753 GSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNY 812
Query: 1300 WSQVFILPKTITKMIYL--------------QKVSLDWEN*RKKEGIGFLRTTM*TQSYW 1437
W Q+F LPK + K + K + W+ ++ + G L T
Sbjct: 813 WGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNV---TNMVL 869
Query: 1438 WT*YY*HLGVEQRSYSKIIMESKP-IKKINCG*DGCIAFISRANLPGQSSQNRLLGLY*R 1614
W + + ++ + K ++ +N +I R N+ + + + +
Sbjct: 870 WN----KAAILKLLWAITFKQDKLWVRWVNA------YYIKRQNIENVTVSSNTSWILRK 919
Query: 1615 FSKVDRHLRRQGMIIISSYSCRISLFRSFTKIF*RRPKVSWRRVVYNNFGAPK*AFIFRV 1794
+ L R G S S+ +++ + V W+R++ NN PK FI +
Sbjct: 920 IFESRELLTRTGGWEAVSNHMNFSIKKTYKLLQEDYENVVWKRLICNNKATPKSQFILWL 979
Query: 1795 AALRRLYTKDRLLSWDILSNVDCPLCSQTQKIINHLFFVCPYTSFV*RNLLSWLGIHKHP 1974
A L RL T +R+ W+ + C +C + I HLFF C Y+ + +L +L +
Sbjct: 980 AMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNCIYSKEIWGKVLLYLNLQPQA 1039
Query: 1975 REWAIELDWIARQKGKTPATYIFIMLTDGCIYHL*KERNCRIFQNCSRNAN 2127
A + I + + +++M+ +Y + RN ++F+ N N
Sbjct: 1040 DAQAKKELAIKKARSTKDRNKLYVMMFTESVYAIWLLRNAKVFRGIEINQN 1090
Score = 127 bits (320), Expect(5) = e-102
Identities = 56/120 (46%), Positives = 83/120 (69%)
Frame = +1
Query: 328 LYFFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPH 507
L FFE G M K I+C +TL+ K+ + +RPI C+ LYK+I KI+T R+Q ++
Sbjct: 485 LDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITE 544
Query: 508 IIDNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
++D QT ++P R I DNI+ + EL++ Y R+ +SPRC++KVD +KAYDS+EW FLE +L
Sbjct: 545 VVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESML 604
Score = 109 bits (273), Expect(5) = e-102
Identities = 51/100 (51%), Positives = 71/100 (71%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L FP+ FI WI++CV TVSYSI+LN P F+A+KGL QG+ LSP+LF + MEY +R +
Sbjct: 607 LGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCM 666
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
++ D +HP+C R+K+ L FAD+LL+F+R D SI
Sbjct: 667 GNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSI 706
Score = 63.2 bits (152), Expect(5) = e-102
Identities = 33/90 (36%), Positives = 54/90 (60%)
Frame = +3
Query: 66 IKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDLKEMDE 245
I+ EI +FY+ LL +++ +L +ID V+ + LS T L+ IT ++ L ++D+
Sbjct: 396 IQNEICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDD 455
Query: 246 NKALGCDGLNVCFFKKAWSVVGNEVIKAVL 335
KA G DG N FFKK+W V+ E+ + +L
Sbjct: 456 TKAPGLDGFNSVFFKKSWLVIKQEIYEGIL 485
Score = 34.3 bits (77), Expect(5) = e-102
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 984 SLSRVFLTVLTISVASGLKANLSKSFIYFGRVKPEVQDQI 1103
S+S++ + S ASGL+A++ KS IYFG V E +Q+
Sbjct: 705 SISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQL 744
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 106 bits (265), Expect(6) = 2e-73
Identities = 48/114 (42%), Positives = 76/114 (66%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF G + K I+ I+ L+ K ++ +RPI+ C VLYK+I KII +R++ ++P I
Sbjct: 499 FFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFI 558
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
NQ+A+V R++ +N++ + ELVK Y + IS RC +K+D KA+DS++WPFL
Sbjct: 559 AGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFL 612
Score = 88.2 bits (217), Expect(6) = 2e-73
Identities = 40/104 (38%), Positives = 65/104 (62%)
Frame = +2
Query: 683 FYTLHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFN 862
F L FP +FI WI C+ T S+S+ +N F++ +GL QG +LSPYLFV+ M+ +
Sbjct: 616 FTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLS 675
Query: 863 RLLESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQ 994
++L+ + ++ YHP+C + + L FAD+L++ S G SI+
Sbjct: 676 KMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIE 719
Score = 85.1 bits (209), Expect(6) = 2e-73
Identities = 40/74 (54%), Positives = 53/74 (71%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
+ F+ G LP RYLG+PL TKRLS C PL++++ R+ SWT++FLSYAG+ LI SVL+
Sbjct: 760 FPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLW 819
Query: 1285 SIQIFWSQVFILPK 1326
SI FW F LP+
Sbjct: 820 SICNFWLAAFRLPR 833
Score = 41.2 bits (95), Expect(6) = 2e-73
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
+C F W G KA +S +CKPK GGL + E N KL+W +
Sbjct: 842 MCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKI 894
Score = 38.9 bits (89), Expect(6) = 2e-73
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 60 DGIKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSL--SKTQQLDLIAFITPDDVLMDLK 233
D IKAE F++ L+ + + + + S Q LI +T +++ L
Sbjct: 404 DEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLF 463
Query: 234 EMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
M +K+ G DG FFK W ++G+E AV
Sbjct: 464 RMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAV 496
Score = 28.5 bits (62), Expect(6) = 2e-73
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 1518 DKLWVRWVHSFYIKGQSTWPI--LPE*ASWVVLKIFKSRQ 1631
+ LWV+WV ++ S W + SW+ K+ K R+
Sbjct: 899 NSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYRE 938
Score = 58.9 bits (141), Expect = 9e-06
Identities = 38/147 (25%), Positives = 71/147 (48%)
Frame = +1
Query: 1726 KVSWRRVVYNNFGAPK*AFIFRVAALRRLYTKDRLLSWDILSNVDCPLCSQTQKIINHLF 1905
+V W +V++ + PK +F +AA RL T DR+++W DC C T + +HLF
Sbjct: 1053 RVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLF 1112
Query: 1906 FVCPYTSFV*RNLLSWLGIHKHPREWAIELDWIARQKGKTPATYIFIMLTDGCIYHL*KE 2085
F C +TS + +L + ++ W ++ I + ++ + IY + +E
Sbjct: 1113 FTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRE 1172
Query: 2086 RNCRIFQNCSRNANVIINVKIEKKLRS 2166
RN R A+ ++ I+K++R+
Sbjct: 1173 RNGRRHGEPPNTASQLVG-WIDKQIRN 1198
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 140 bits (353), Expect(3) = 4e-71
Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 11/284 (3%)
Frame = +2
Query: 686 YTLHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNR 865
Y FP++F+ WI+ CV TVSYS+++N P + F+A+KGL QG+ +SP+LF + MEY +R
Sbjct: 602 YEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSR 661
Query: 866 LLESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQXXXXXXXXXXXXXXEGK 1045
LE L +HP+C RL I L FAD+LL+F R D S+
Sbjct: 662 CLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAA 721
Query: 1046 FE*KFHLFWKGQA*GAGSDFTCSQREIFL---LGTWEFHSVLKDYPSFNVSHWWTKSWAE 1216
K ++++ G D T + ++ LG F + S +++ K E
Sbjct: 722 SHEKSNIYFCGV-----DDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVE 776
Query: 1217 LQAGQLSSYLMQEKNNSSRVYSSPYKYSGLRCSYY------QKRLLR--*SICRRFHWIG 1372
+ + +++ + + + R+ S ++ +Y+ K++++ +CR+F W G
Sbjct: 777 MITNRAQTWMAKLLSYAGRLQLIKSILSSMQ-NYWAHIFPLSKKVIQAVEKVCRKFLWTG 835
Query: 1373 KTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
KT+ KKA V+ + +PK GG N ++ WN+ A+ KLLW++
Sbjct: 836 KTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAI 879
Score = 130 bits (326), Expect(3) = 4e-71
Identities = 57/119 (47%), Positives = 90/119 (75%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF M + I+C ++TL+ KV++ + V++FRPI CTV+YK+I K++T+RM+ I+ ++
Sbjct: 484 FFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVV 543
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKILH 690
+ Q+ ++P R I DNI+ + EL++ YTRK +SPRC+MKVD +KAYDS+EW FLE +L+
Sbjct: 544 NEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLY 602
Score = 48.5 bits (114), Expect(3) = 4e-71
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = +3
Query: 60 DGIKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDLKEM 239
D ++ EI+ FY+ LL + L +D + LS + LI + ++ L +
Sbjct: 391 DEVQEEILEFYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGI 450
Query: 240 DENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
+KA G DG N FFKK+W + E+ +
Sbjct: 451 GNDKAPGLDGFNAYFFKKSWGSIKQEIYAGI 481
Score = 128 bits (321), Expect = 1e-26
Identities = 98/361 (27%), Positives = 166/361 (45%), Gaps = 22/361 (6%)
Frame = +1
Query: 1120 GDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLFSIQIF 1299
G+LPFRYLGVPL++K+L+ QC PLV+ I R +W AK LSYAG+ QLIKS+L S+Q +
Sbjct: 750 GELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNY 809
Query: 1300 WSQVFILPKTITKMIY--------------LQKVSLDWEN*RKKEGIGFLRTTM*TQSYW 1437
W+ +F L K + + + +K + W ++ + G YW
Sbjct: 810 WAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVI--NMKYW 867
Query: 1438 WT*YY*HLGVEQRSYSKIIMESKPIKKINCG*DGCIAF-ISRANLPGQSSQNRLLGLY*R 1614
R+ ++ + K+ ++ I R ++ + N+ + +
Sbjct: 868 -----------NRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRK 916
Query: 1615 FSKVDRHLRRQGMIIISSYSCRISLFRSFTKIF*RRPKVSWRRVVYNNFGAPK*AFIFRV 1794
K HL G + S+ +++ KI +V WRR++ NN+ PK FI +
Sbjct: 917 IVKARDHLSNIGDWDEICIGDKFSMKKAYKKISENGERVRWRRLICNNYATPKSKFILWM 976
Query: 1795 AALRRLYTKDRLLSWDILSNVDCPLCSQTQKIINHLFFVCPYTSFV*RNLLSWLGIHKHP 1974
RL T DR+ W + +++ LC + I HLFF C Y++ V + I + P
Sbjct: 977 MLHERLPTVDRISRWGVQCDLNYRLCRNDGETIQHLFFSCSYSAGVWSKICY---IMRFP 1033
Query: 1975 REWAIELDWIA-------RQKGKTPATYIFIMLTDGCIYHL*KERNCRIFQNCSRNANVI 2133
+ I+ ++KGK + +ML +Y + K+RN R F +++ N +
Sbjct: 1034 NSGVSHQEIISSVCGQARKKKGK-----LIVMLYTEFVYAIWKQRNKRTFTGENKDENEV 1088
Query: 2134 I 2136
+
Sbjct: 1089 L 1089
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 108 bits (269), Expect(5) = 5e-71
Identities = 46/114 (40%), Positives = 77/114 (67%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF G + K ++ I+ L+ K ++ +RPI+ C VLYK I K++ +R++C++P I
Sbjct: 765 FFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFI 824
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
NQ+A++ R++ +N++ + ELVK Y + +SPRC MK+D KA+DS++WPFL
Sbjct: 825 APNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFL 878
Score = 85.1 bits (209), Expect(5) = 5e-71
Identities = 39/89 (43%), Positives = 56/89 (62%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
+ F G LP RYLG+PL TKR+++ C PL++KI R++SW +FLSYAG+ QL+ SV+
Sbjct: 1015 FPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVIS 1074
Query: 1285 SIQIFWSQVFILPKTITKMIYLQKVSLDW 1371
S+ FW F LP+ + I + W
Sbjct: 1075 SLTKFWISAFRLPRACIREIEQISAAFLW 1103
Score = 77.4 bits (189), Expect(5) = 5e-71
Identities = 40/101 (39%), Positives = 57/101 (56%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L P KFI WI C+ T S+S+ +N GL QG SLSPYLFV+ M + +L
Sbjct: 885 LDIPEKFIHWINLCISTASFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAML 933
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQ 994
+ +K YHPRC + + L FAD++++FS G S++
Sbjct: 934 DKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLE 974
Score = 50.1 bits (118), Expect(5) = 5e-71
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +3
Query: 57 QDGIKAEIVSFYQALLRSTTPELP--SIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDL 230
QD IK E V F+ LL S + S+D + S +Q L+A IT +V+
Sbjct: 669 QDDIKIEAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVF 728
Query: 231 KEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
+ NK+ G DG V FF++ WSV+G EV A+
Sbjct: 729 FSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAI 762
Score = 39.3 bits (90), Expect(5) = 5e-71
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
I F W G KA V+ +CKPK GGL +++ NK KL+W L
Sbjct: 1097 ISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRL 1149
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 99.4 bits (246), Expect(5) = 5e-71
Identities = 45/118 (38%), Positives = 78/118 (66%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF++G + K + + L+ K N T+ +FRPI+ LYK+I K++T R+Q ++ +I
Sbjct: 353 FFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVI 412
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
++Q+A++P R + +N++ + E+V Y R ISPR M+KVD +KA+DS++W F+ L
Sbjct: 413 GHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAAL 470
Score = 82.0 bits (201), Expect(5) = 5e-71
Identities = 42/100 (42%), Positives = 59/100 (59%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L P ++I WI C+ T S++I +N F + KGL QG+ LSPYLFV+ ME F++LL
Sbjct: 473 LAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
S Y YHP+ L I L FAD++++F G S+
Sbjct: 533 YSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSM 572
Score = 78.2 bits (191), Expect(5) = 5e-71
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
Y F G P RYLG+PL ++L I PL++K+ R+ SW +K LS+AG+ QLI SV+F
Sbjct: 613 YGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIF 672
Query: 1285 SIQIFWSQVFILPKTITKMI 1344
+ FW F+LPK K I
Sbjct: 673 GLINFWMSTFLLPKGCIKKI 692
Score = 51.2 bits (121), Expect(5) = 5e-71
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = +2
Query: 1343 SICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
S+C +F W G GRK + VS C PK GGL EWNK + +L+W L
Sbjct: 694 SLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVL 747
Score = 49.3 bits (116), Expect(5) = 5e-71
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +3
Query: 57 QDGIKAEIVSFYQALLRSTTP--ELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDL 230
Q GI V++Y+ LL S + D ++L + S+ Q +L T D++
Sbjct: 258 QQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRC-SQDQCSELEKSFTDDEIKAAF 316
Query: 231 KEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
K + NK G DG +V FF+ WS++G EV+ A+
Sbjct: 317 KSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAI 350
Score = 68.6 bits (166), Expect = 1e-08
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Frame = +1
Query: 1717 RRPKVSWRRVVYNNFGAPK*AFIFRVAALRRLYTKDRLLSWDILSNVDCPLCSQTQKIIN 1896
RRP W + V+ PK AF F A L RL T+ RL+SW ++S+ +C LCS + +
Sbjct: 904 RRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRD 963
Query: 1897 HLFFVCPYTSFV*RNLLSWLGIHKHPRE-----WAIELDWIARQKGKTPATYIFIMLTDG 2061
HL +C ++S V R + + PR+ WA L W RQ + + ++
Sbjct: 964 HLLLLCDFSSQVWRMVF----LRLCPRQRLLCTWAELLSW-TRQSTAAAPSLLRKVVAQL 1018
Query: 2062 CIYHL*KERNCRIFQNCSRNANVIINVKIEKKLRSL 2169
+Y+L ++RN + + + +V+ + ++++LR++
Sbjct: 1019 VVYNLWRQRNLVLHSSLRVSCSVVFRL-VDRELRNV 1053
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 99.4 bits (246), Expect(5) = 5e-71
Identities = 45/118 (38%), Positives = 78/118 (66%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF++G + K + + L+ K N T+ +FRPI+ LYK+I K++T R+Q ++ +I
Sbjct: 353 FFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVI 412
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
++Q+A++P R + +N++ + E+V Y R ISPR M+KVD +KA+DS++W F+ L
Sbjct: 413 GHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAAL 470
Score = 82.0 bits (201), Expect(5) = 5e-71
Identities = 42/100 (42%), Positives = 59/100 (59%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L P ++I WI C+ T S++I +N F + KGL QG+ LSPYLFV+ ME F++LL
Sbjct: 473 LAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
S Y YHP+ L I L FAD++++F G S+
Sbjct: 533 YSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSM 572
Score = 78.2 bits (191), Expect(5) = 5e-71
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
Y F G P RYLG+PL ++L I PL++K+ R+ SW +K LS+AG+ QLI SV+F
Sbjct: 613 YGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIF 672
Query: 1285 SIQIFWSQVFILPKTITKMI 1344
+ FW F+LPK K I
Sbjct: 673 GLINFWMSTFLLPKGCIKKI 692
Score = 51.2 bits (121), Expect(5) = 5e-71
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = +2
Query: 1343 SICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
S+C +F W G GRK + VS C PK GGL EWNK + +L+W L
Sbjct: 694 SLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVL 747
Score = 49.3 bits (116), Expect(5) = 5e-71
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +3
Query: 57 QDGIKAEIVSFYQALLRSTTP--ELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDL 230
Q GI V++Y+ LL S + D ++L + S+ Q +L T D++
Sbjct: 258 QQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRC-SQDQCSELEKSFTDDEIKAAF 316
Query: 231 KEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
K + NK G DG +V FF+ WS++G EV+ A+
Sbjct: 317 KSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAI 350
Score = 69.7 bits (169), Expect = 5e-09
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Frame = +1
Query: 1717 RRPKVSWRRVVYNNFGAPK*AFIFRVAALRRLYTKDRLLSWDILSNVDCPLCSQTQKIIN 1896
RRP W R V+ PK AF F A L RL T+ RL+SW ++S+ +C LCS + +
Sbjct: 904 RRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRD 963
Query: 1897 HLFFVCPYTSFV*RNLLSWLGIHKHPRE-----WAIELDWIARQKGKTPATYIFIMLTDG 2061
HL +C ++S V R + + PR+ WA L W RQ + + ++
Sbjct: 964 HLLLLCDFSSQVWRMVF----LRLCPRQRLLCTWAELLSW-TRQSTAAAPSLLRKVVAQL 1018
Query: 2062 CIYHL*KERNCRIFQNCSRNANVIINVKIEKKLRSL 2169
+Y+L ++RN + + + +V+ + ++++LR++
Sbjct: 1019 VVYNLWRQRNLVLHSSLRVSCSVVFRL-VDRELRNV 1053
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 145 bits (365), Expect(3) = 4e-69
Identities = 69/127 (54%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Frame = +1
Query: 328 LYFFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPH 507
L FF+TG M K I+C +TL+ K N ++V+ FRPI C+V+YK+I KI+T RMQ ++
Sbjct: 165 LDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNS 224
Query: 508 IIDNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKI- 684
++ NQ+A+V R+I+DNII SHELVK Y+RK ISPRCM+K+D QKAY+S+EWPF++ +
Sbjct: 225 VVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLM 284
Query: 685 LHTAFSY 705
L FSY
Sbjct: 285 LELGFSY 291
Score = 101 bits (252), Expect(3) = 4e-69
Identities = 48/100 (48%), Positives = 65/100 (65%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L F KF+ W++ C+ T SY+ +N F AKKGL QG+ +SPYLFV+ MEY N L
Sbjct: 287 LGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQGDPISPYLFVICMEYLNICL 346
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
L + ++HPRC RL +I + F D+LLLFSRGD +S+
Sbjct: 347 IQLRKNAAFRFHPRCKRLNLIHVCFVDDLLLFSRGDVDSV 386
Score = 65.9 bits (159), Expect(3) = 4e-69
Identities = 38/90 (42%), Positives = 52/90 (57%)
Frame = +3
Query: 66 IKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDLKEMDE 245
IK EI FY L+ S+ LP +D V+ LS+ QQ L + T +V L MD
Sbjct: 76 IKEEIRGFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDS 135
Query: 246 NKALGCDGLNVCFFKKAWSVVGNEVIKAVL 335
+KA G DG NV FFK +W+++G+ VI A+L
Sbjct: 136 SKAPGIDGYNVHFFKCSWNIIGDSVIDAIL 165
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 104 bits (260), Expect(6) = 7e-69
Identities = 49/118 (41%), Positives = 77/118 (65%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF+ G + K I+ I+ L+ K +R +RPI+ C VLYK+I KII +R++ ++P I
Sbjct: 146 FFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFI 205
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
NQ+A+V R++ +N++ + ELVK Y + IS RC +K+D KA+DS++W FL L
Sbjct: 206 AENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTL 263
Score = 87.0 bits (214), Expect(6) = 7e-69
Identities = 40/101 (39%), Positives = 64/101 (63%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
++F FI WI C+ T S+S+ +N + F++K+GL QG SLSPYLFV+ M+ +++L
Sbjct: 266 MNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKML 325
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQ 994
+ + +HP+C RL + L FAD+L++ S G SI+
Sbjct: 326 DKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIE 366
Score = 77.4 bits (189), Expect(6) = 7e-69
Identities = 38/80 (47%), Positives = 53/80 (66%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
++F G LP RYLG+PL TKRL+ PL+++I R+ +WT +F S+AG+ LIKSVL+
Sbjct: 407 FLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLW 466
Query: 1285 SIQIFWSQVFILPKTITKMI 1344
SI FW F LP+ + I
Sbjct: 467 SICNFWLAAFRLPRQCIREI 486
Score = 42.7 bits (99), Expect(6) = 7e-69
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
+C F W G KA +S + +CKPK GGL ++ E N + KL+W +
Sbjct: 489 LCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRI 541
Score = 31.2 bits (69), Expect(6) = 7e-69
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 60 DGIKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSLSKTQQLD--LIAFITPDDVLMDLK 233
D I E F++ L+ + ++ R + + T + L ++ +++ L
Sbjct: 51 DDIMVEAEKFFKEFLQLIPEDFVGVEVRELQDLLQFRCTNSDNEMLTREVSSEEIKTVLF 110
Query: 234 EMDENKALGCDGLNVCFFKKAWSVVGNE 317
M ++K+ G DG F+K W ++G E
Sbjct: 111 SMPKDKSPGPDGYTSEFYKATWDIIGQE 138
Score = 29.6 bits (65), Expect(6) = 7e-69
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 1509 NKKDKLWVRWVHSFYIKGQSTWPILPE*A--SWVVLKIFKSR 1628
+ + LW +WV + I+ +S W + + SW+ KI K R
Sbjct: 543 SNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIR 584
Score = 61.6 bits (148), Expect = 1e-06
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +1
Query: 1729 VSWRRVVYNNFGAPK*AFIFRVAALRRLYTKDRLLSWDILSNV--DCPLCSQTQKIINHL 1902
VSW + V+ PK A +A RL T DR+L W+ +V +C LC+ K + HL
Sbjct: 701 VSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHL 760
Query: 1903 FFVCPYTSFV*RNLLSWLGIHKHPREWAIELDWIARQKGKTPATYIFIMLTDGCIYHL*K 2082
FF C Y S V L + ++ W+ L I+ ++ + IYH+ +
Sbjct: 761 FFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWR 820
Query: 2083 ERNCR 2097
ERN R
Sbjct: 821 ERNGR 825
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 94.7 bits (234), Expect(6) = 3e-67
Identities = 43/114 (37%), Positives = 73/114 (64%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF +G + K + I L+ K+ NP+ FRPI+ LYK+I +++T R+Q ++ +I
Sbjct: 493 FFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVI 552
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
+ Q+A++P R + +N++ + +LV Y ISPR M+KVD +KA+DS+ W F+
Sbjct: 553 SSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFV 606
Score = 80.9 bits (198), Expect(6) = 3e-67
Identities = 42/100 (42%), Positives = 59/100 (59%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L P KFI WI C+ T ++++ +N F++ KGL QG+ LSPYLFV+ ME F+ LL
Sbjct: 613 LAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLL 672
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
S YHP+ S L I L FAD++++F G S+
Sbjct: 673 HSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSL 712
Score = 76.6 bits (187), Expect(6) = 3e-67
Identities = 39/80 (48%), Positives = 49/80 (61%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
Y F G LP RYLG+PL ++L I + PL++KI R SW K LS+AG+ QLI SV+F
Sbjct: 753 YGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIF 812
Query: 1285 SIQIFWSQVFILPKTITKMI 1344
FW F+LPK K I
Sbjct: 813 GSINFWMSTFLLPKGCIKRI 832
Score = 50.1 bits (118), Expect(6) = 3e-67
Identities = 24/54 (44%), Positives = 29/54 (53%)
Frame = +2
Query: 1343 SICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
S+C RF W G + K VS LC PK GGL +LEWNK +L+W L
Sbjct: 834 SLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRL 887
Score = 40.0 bits (92), Expect(6) = 3e-67
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 57 QDGIKAEIVSFYQALLRSTT-PELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDLK 233
Q+GI S++ +LL P L + +L S Q +L + + +D+ L
Sbjct: 398 QEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALF 457
Query: 234 EMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
+ NK+ G DG FF +WS+VG EV A+
Sbjct: 458 SLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAI 490
Score = 25.0 bits (53), Expect(6) = 3e-67
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 1515 KDKLWVRWVHSFYIKGQSTWPI 1580
KD LW W H ++ S W +
Sbjct: 891 KDSLWADWQHLHHLSRGSFWAV 912
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 100 bits (248), Expect(6) = 1e-62
Identities = 42/114 (36%), Positives = 75/114 (65%)
Frame = +1
Query: 352 MFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHIIDNNQTA 531
++ ++ I+ L+ K ++ +RPI+ C VLYK+I KII +R++ ++P I NQ+A
Sbjct: 23 IYNGVNSTILALIPKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSA 82
Query: 532 YVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKILHT 693
++ R++ +N++ + ELVK Y + +S RC +K+D KA+DS++W FL +L T
Sbjct: 83 FIKDRLLIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWSFLRNVLLT 136
Score = 84.0 bits (206), Expect(6) = 1e-62
Identities = 38/102 (37%), Positives = 63/102 (61%)
Frame = +2
Query: 689 TLHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRL 868
TL FP +F+ WI+ CV T S+S+ +N F + +GL QG SL+PYLFV++M+ ++
Sbjct: 136 TLDFPQEFVHWIMLCVTTASFSVQVNRELAGYFNSLRGLRQGCSLTPYLFVIVMDVLSKK 195
Query: 869 LESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQ 994
L+ + YHP+C L + L FAD++++ + G S++
Sbjct: 196 LDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLE 237
Score = 72.8 bits (177), Expect(6) = 1e-62
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
+ F G LP RYL +PL TKR + PL+++I R+ +WTA+FLSYAG+ L+ SVL+
Sbjct: 278 FHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAGRLNLVSSVLW 337
Query: 1285 SIQIFWSQVFILPKTITKMI 1344
SI FW F LP+ + I
Sbjct: 338 SICNFWLSAFRLPRECVREI 357
Score = 41.2 bits (95), Expect(6) = 1e-62
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
+C F W G KA ++ E +C+PK GGL I E N KL+W +
Sbjct: 360 LCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRI 412
Score = 31.2 bits (69), Expect(6) = 1e-62
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 1518 DKLWVRWVHSFYIKGQSTWPI-LPE*ASWVVLKIFKSRQT 1634
D LWV+W+ ++ +K + W SW+ K+ K R T
Sbjct: 417 DSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDT 456
Score = 22.7 bits (47), Expect(6) = 1e-62
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 1029 SGLKANLSKSFIYFGRVKPEV 1091
SGLK +++K+ IYF + V
Sbjct: 250 SGLKISMAKTTIYFAGISKSV 270
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 106 bits (264), Expect(5) = 7e-61
Identities = 47/118 (39%), Positives = 78/118 (66%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF G + K I+ I+ L+ K K ++ +RPI+ C VLYK+I KII +R++ ++P I
Sbjct: 387 FFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFI 446
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
NQ+A+V R++ +N++ + E+VK Y + +S RC +K+D KA+DS++W FL +L
Sbjct: 447 VGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVL 504
Score = 80.9 bits (198), Expect(5) = 7e-61
Identities = 37/100 (37%), Positives = 59/100 (59%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
++FP +F WI C+ T S+S+ +N F + + L QG SLSPYLFV+ M+ +++L
Sbjct: 507 MNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKML 566
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
+ + YHP+C + + L FAD+L++ S G SI
Sbjct: 567 DKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSI 606
Score = 77.4 bits (189), Expect(5) = 7e-61
Identities = 35/83 (42%), Positives = 55/83 (66%)
Frame = +1
Query: 1096 IRFYMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKS 1275
++ + F G LP RYLG+PL +KRL+ C PL++++ ++ +WT++FLS+AG+ LI S
Sbjct: 645 VQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISS 704
Query: 1276 VLFSIQIFWSQVFILPKTITKMI 1344
L+SI FW F LP+ + I
Sbjct: 705 TLWSICNFWMAAFRLPRACIREI 727
Score = 31.6 bits (70), Expect(5) = 7e-61
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 201 ITPDDVLMDLKEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
++ +++ + M +K+ G DG F+K AW+++G E I A+
Sbjct: 341 VSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAI 384
Score = 29.6 bits (65), Expect(5) = 7e-61
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPK 1429
+C F W G KA VS E +CKPK
Sbjct: 730 LCSAFLWSGTELSSNKAKVSWEAICKPK 757
Score = 59.3 bits (142), Expect = 7e-06
Identities = 33/124 (26%), Positives = 60/124 (48%)
Frame = +1
Query: 1726 KVSWRRVVYNNFGAPK*AFIFRVAALRRLYTKDRLLSWDILSNVDCPLCSQTQKIINHLF 1905
K +W + V+ PK +F +A +L T R+ W++ S+V C LC+ + +HLF
Sbjct: 758 KEAWHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLF 817
Query: 1906 FVCPYTSFV*RNLLSWLGIHKHPREWAIELDWIARQKGKTPATYIFIMLTDGCIYHL*KE 2085
F C YTS + L L + +W + +++ Q + ++ + +Y + +E
Sbjct: 818 FSCAYTSGIWEALAKNLLQRSYTTDWQTIISYVSGQCHDRVSCFLARSVLQASVYTIWRE 877
Query: 2086 RNCR 2097
RN R
Sbjct: 878 RNGR 881
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 93.6 bits (231), Expect(5) = 3e-59
Identities = 42/114 (36%), Positives = 74/114 (64%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF +G + K + + L+ K+ N S + FRPI+ LYK+I K++T R++ ++ +I
Sbjct: 494 FFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVI 553
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
+Q+A++P R++ +N++ + E+V Y K IS R M+KVD +KA+DS+ W F+
Sbjct: 554 SPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFI 607
Score = 85.5 bits (210), Expect(5) = 3e-59
Identities = 43/103 (41%), Positives = 62/103 (60%)
Frame = +2
Query: 683 FYTLHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFN 862
F L P KF+ WI C+ T +S+M+N F++ KGL QG+ LSPYLFV+ ME F+
Sbjct: 611 FRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFS 670
Query: 863 RLLESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
LL++ Y YHP+ + L I L FAD++++F G S+
Sbjct: 671 SLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSL 713
Score = 57.0 bits (136), Expect(5) = 3e-59
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +1
Query: 1096 IRFYMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKS 1275
I Y F LP RYLG+PL +++L I + +++ R SW K LS+AG+ QLI S
Sbjct: 751 ISHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITS 805
Query: 1276 VLFSIQIFWSQVFIL 1320
V+ + FW F+L
Sbjct: 806 VITGLVNFWMSTFVL 820
Score = 43.1 bits (100), Expect(5) = 3e-59
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +3
Query: 54 VQDGIKAEIVSFYQALLRSTTPE--LPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMD 227
+++GIK +F+++LL E L D ++L++ S Q DL + D+
Sbjct: 398 IKEGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRC-SVDQINDLERSFSDLDIQEA 456
Query: 228 LKEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
+ NKA G DG + FFK W VVG EV +AV
Sbjct: 457 FFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAV 491
Score = 41.2 bits (95), Expect(5) = 3e-59
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 1343 SICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
S+C RF W G K A ++ +C PK GG+ WNK + +W L
Sbjct: 830 SLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIWPL 883
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 93.6 bits (231), Expect(5) = 3e-59
Identities = 42/114 (36%), Positives = 74/114 (64%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF +G + K + + L+ K+ N S + FRPI+ LYK+I K++T R++ ++ +I
Sbjct: 494 FFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVI 553
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
+Q+A++P R++ +N++ + E+V Y K IS R M+KVD +KA+DS+ W F+
Sbjct: 554 SPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFI 607
Score = 86.3 bits (212), Expect(5) = 3e-59
Identities = 43/103 (41%), Positives = 63/103 (61%)
Frame = +2
Query: 683 FYTLHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFN 862
F L P KF+ WI C+ T +S+M+N F++ KGL QG+ LSPYLFV+ ME F+
Sbjct: 611 FRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFS 670
Query: 863 RLLESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
LL++ Y +YHP+ + L I L FAD++++F G S+
Sbjct: 671 SLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSL 713
Score = 57.0 bits (136), Expect(5) = 3e-59
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +1
Query: 1096 IRFYMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKS 1275
I Y F LP RYLG+PL +++L I + +++ R SW K LS+AG+ QLI S
Sbjct: 751 ISHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITS 805
Query: 1276 VLFSIQIFWSQVFIL 1320
V+ + FW F+L
Sbjct: 806 VITGLVNFWMSTFVL 820
Score = 43.1 bits (100), Expect(5) = 3e-59
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +3
Query: 54 VQDGIKAEIVSFYQALLRSTTPE--LPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMD 227
+++GIK +F+++LL E L D ++L++ S Q DL + D+
Sbjct: 398 IKEGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRC-SVDQINDLERSFSDLDIQEA 456
Query: 228 LKEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
+ NKA G DG + FFK W VVG EV +AV
Sbjct: 457 FFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAV 491
Score = 40.4 bits (93), Expect(5) = 3e-59
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 1343 SICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
S+C RF W G K A ++ +C PK GG+ WNK + +W L
Sbjct: 830 SLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIWPL 883
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 85.9 bits (211), Expect(5) = 7e-56
Identities = 39/118 (33%), Positives = 68/118 (57%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF TG + K + ITL+ KV + FRP+ CT +YK+I ++I+ R+ + +
Sbjct: 40 FFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAV 99
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
+NQ ++ R++ +N++ + ELV + + + R ++VD KAYD++ W FL IL
Sbjct: 100 QSNQVGFIKGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINIL 157
Score = 80.1 bits (196), Expect(5) = 7e-56
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Frame = +1
Query: 1054 KVSFILEGSSL---RCRIRFYMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTS 1224
K + +L+G + R ++G LP RYLGVPL ++++ PLVD+I R TS
Sbjct: 281 KTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTS 340
Query: 1225 WTAKFLSYAGKEQLIKSVLFSIQIFWSQVFILP 1323
WTA+ LS+AG+ QL+KSV++S FW+ +FILP
Sbjct: 341 WTARHLSFAGRLQLLKSVIYSTINFWASIFILP 373
Score = 68.6 bits (166), Expect(5) = 7e-56
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L+ P FI WI C+ T SYSI N + F KKG+ QG+ +S +LFV++M+ R L
Sbjct: 160 LNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSL 219
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
+ + HP+C I L FAD++L+F G S+
Sbjct: 220 DLGAVEGRFVLHPKCLAPMITHLSFADDILVFCDGSLSSL 259
Score = 42.0 bits (97), Expect(5) = 7e-56
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
+C F W G ++A +S + +C K +GGL + WNK KL+W L
Sbjct: 383 MCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNKVLALKLIWLL 435
Score = 32.3 bits (72), Expect(5) = 7e-56
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 222 MDLKEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
M L M NKA G DG V FF +AW +V I A+
Sbjct: 1 MALFSMPRNKAPGPDGFPVEFFLEAWPIVKESFIAAI 37
Score = 60.5 bits (145), Expect = 3e-06
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +1
Query: 1729 VSWRRVVYNNFGAPK*AFIFRVAALRRLYTKDRLLSWDILSNVDCPLCSQTQKIINHLFF 1908
VSW + V+ PK AFI V A RL+T+DRL SW ++ +C LC+ + +HLFF
Sbjct: 580 VSWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFF 639
Query: 1909 VCPYTS 1926
C ++S
Sbjct: 640 ACRFSS 645
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 131 bits (330), Expect(3) = 2e-55
Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 13/285 (4%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L FP F W++ CV TV+Y+I++N + F+A KGL QG+ +SP+LF + MEY +RLL
Sbjct: 412 LGFPDLFTKWVMKCVKTVNYTIVVNGQNTQRFDAAKGLRQGDPMSPFLFAIAMEYLSRLL 471
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQXXXXXXXXXXXXXXEGKFE 1051
+ L DK KYHP+ ++L + L FAD+LLLFSRGD SI+
Sbjct: 472 KGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCFTEFSQASGLQANL 531
Query: 1052 *KFHLFWKGQA*GAGSDFTCSQREIFLLG------TWEFHSVLKDYPSFNVSHWWTKSWA 1213
K ++ G Q+ I LG +++ V N W+
Sbjct: 532 NKSSIYC------GGVQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWY--PLI 583
Query: 1214 ELQAGQLSSYLMQEKNNSSRVYSSPYKYSGLRCSYYQKRLLR*SI-------CRRFHWIG 1372
E +++S+ ++ + + R G++ + Q ++ I CR + W G
Sbjct: 584 EKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYLWSG 643
Query: 1373 KTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSLS 1507
KKAL++ +++C PK GGL ++ WN+ A+ KL W L+
Sbjct: 644 VGYVTKKALIAWDKVCSPKYEGGLGLINLKIWNRSAVTKLCWDLA 688
Score = 88.2 bits (217), Expect(3) = 2e-55
Identities = 37/60 (61%), Positives = 49/60 (81%)
Frame = +1
Query: 508 IIDNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
II ++Q ++P R I DNII +HELVK YTRK +SPRCM+K+D KAYDS+EWPFLE+++
Sbjct: 350 IISDSQAGFIPGRKIGDNIILAHELVKAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQVM 409
Score = 46.6 bits (109), Expect(3) = 2e-55
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = +3
Query: 1506 ANKKDKLWVRWVHSFYIKGQSTW 1574
ANK+DKLW++W+H++YIKGQ W
Sbjct: 688 ANKEDKLWIKWIHAYYIKGQREW 710
>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 543
Score = 85.9 bits (211), Expect(4) = 2e-49
Identities = 39/118 (33%), Positives = 68/118 (57%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF TG + K + ITL+ KV + FRP+ CT +YK+I ++I+ R+ + +
Sbjct: 40 FFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAV 99
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
+NQ ++ R++ +N++ + ELV + + + R ++VD KAYD++ W FL IL
Sbjct: 100 QSNQVGFIKGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINIL 157
Score = 80.1 bits (196), Expect(4) = 2e-49
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Frame = +1
Query: 1054 KVSFILEGSSL---RCRIRFYMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTS 1224
K + +L+G + R ++G LP RYLGVPL ++++ PLVD+I R TS
Sbjct: 281 KTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTS 340
Query: 1225 WTAKFLSYAGKEQLIKSVLFSIQIFWSQVFILP 1323
WTA+ LS+AG+ QL+KSV++S FW+ +FILP
Sbjct: 341 WTARHLSFAGRLQLLKSVIYSTINFWASIFILP 373
Score = 68.6 bits (166), Expect(4) = 2e-49
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L+ P FI WI C+ T SYSI N + F KKG+ QG+ +S +LFV++M+ R L
Sbjct: 160 LNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSL 219
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESI 991
+ + HP+C I L FAD++L+F G S+
Sbjct: 220 DLGAVEGRFVLHPKCLAPMITHLSFADDILVFCDGSLSSL 259
Score = 32.3 bits (72), Expect(4) = 2e-49
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 222 MDLKEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
M L M NKA G DG V FF +AW +V I A+
Sbjct: 1 MALFSMPRNKAPGPDGFPVEFFLEAWPIVKESFIAAI 37
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 104 bits (260), Expect(4) = 9e-49
Identities = 45/114 (39%), Positives = 77/114 (67%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF G + K ++ I+ L+ K ++ +RPI+ C VLYK+I KI+ +R++ ++P I
Sbjct: 796 FFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFI 855
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
NQ+A+V R++ +N++ + ELVK Y ++ ++PRC MK+D KA+DS++W FL
Sbjct: 856 LQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFL 909
Score = 94.7 bits (234), Expect(4) = 9e-49
Identities = 77/285 (27%), Positives = 123/285 (43%), Gaps = 14/285 (4%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
L+FP F WI C+ T ++S+ +N F + +GL QG +LSPYLFV+ M + ++
Sbjct: 916 LNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMI 975
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFSRGDPESIQXXXXXXXXXXXXXXEGKFE 1051
+ + YHP+C ++ + L FAD+L++F G SI+
Sbjct: 976 DEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISL 1035
Query: 1052 *KFHLFWKGQA*G------AGSDFTCSQREIFLLG--------TWEFHSVLKDYPSFNVS 1189
K ++ G + + F Q + LG T +S L + +S
Sbjct: 1036 EKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKIS 1095
Query: 1190 HWWTKSWAELQAGQLSSYLMQEKNNSSRVYSSPYKYSGLRCSYYQKRLLR*SICRRFHWI 1369
W +S + AG+L+ NS V + + S R R + +C F W
Sbjct: 1096 SWTARSLS--YAGRLALL------NSVIVSIANFWMSAYRLPAGCIREIE-KLCSAFLWS 1146
Query: 1370 GKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
G KKA ++ +C+PK GGL + E NK + KL+W L
Sbjct: 1147 GPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRL 1191
Score = 39.7 bits (91), Expect(4) = 9e-49
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +3
Query: 66 IKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSL--SKTQQLDLIAFITPDDVLMDLKEM 239
IK E F+ L + + I + N S S T Q L +T +++ L M
Sbjct: 703 IKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAM 762
Query: 240 DENKALGCDGLNVCFFKKAWSVVGNEVIKAV 332
NK+ G DG FFK WS+ G + I A+
Sbjct: 763 PNNKSPGPDGYTSEFFKATWSLTGPDFIAAI 793
Score = 25.4 bits (54), Expect(4) = 9e-49
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 1524 LWVRWVHSFYIKGQSTWPI--LPE*ASWVVLKIFKSRQ 1631
LWV W+ +F I+ + W SW+ K+ K R+
Sbjct: 1198 LWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRE 1235
Score = 73.9 bits (180), Expect = 3e-10
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Frame = +1
Query: 1681 ISLFRSFTKIF*RR--------------PKVSWRRVVYNNFGAPK*AFIFRVAALRRLYT 1818
ISL+RS F +R P+ +W + V+ + PK +F+ + RL T
Sbjct: 1322 ISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLST 1381
Query: 1819 KDRLLSWDILSNVDCPLCSQTQKIINHLFFVCPYTSFV*RNLLSWLGIHKHPREWAIELD 1998
DR+ +W+ V C LC+ ++ +HLFF C YTS+V L L + R+W
Sbjct: 1382 GDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFT 1441
Query: 1999 WIARQKGKTPATYIFIMLTDGCIYHL*KERNCRIFQNCSRNANVIINVKIEKKLRS 2166
+ ++F + IYH+ +ERN R S N +I + I+K +R+
Sbjct: 1442 LLCTSNLPRDHLFLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKL-IDKTVRN 1496
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 82.0 bits (201), Expect(5) = 1e-48
Identities = 38/115 (33%), Positives = 72/115 (62%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
F+ETG + + + A I L+ K+ NPS+++ +RPI+ +YK++ K++ R+Q ++ +I
Sbjct: 475 FWETGCLPQGCNTAYIALIPKIDNPSSLKDYRPISMVGFIYKIVAKLLAKRLQSVISSLI 534
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLE 678
Q++YV R I D + + E+++ ++ I ++K+D KAYDS+ W FL+
Sbjct: 535 SPLQSSYVKGRQILDGALVASEIIESCKKRNIE-AILLKLDFHKAYDSVSWNFLQ 588
Score = 72.0 bits (175), Expect(5) = 1e-48
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
++FP K+ WI +CV + S SI++N P F+ +GL QG+ LSP+LFV++ E ++++
Sbjct: 594 MNFPVKWCEWIKTCVTSASASILVNGSPTPPFKLHRGLRQGDPLSPFLFVLVGEVLSQMI 653
Query: 872 ESLDSDKYCKYHPRCSR-LKIIQLEFADNLLLFSRGDPESIQ 994
S + + P CSR +I L++AD+ L+F + S++
Sbjct: 654 SKATSLQLWRGIPACSRGSEITHLQYADDTLMFCEANTNSLK 695
Score = 57.8 bits (138), Expect(5) = 1e-48
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +1
Query: 1051 VKVSFILEGS-SLRCRIRFYMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSW 1227
V S+I E + SL C+I G +PF YLG+P+ I P++DK+ ++ SW
Sbjct: 724 VTSSWIQEAANSLMCKI-------GTIPFSYLGLPIGDNPARIRTWDPIIDKLEKKLASW 776
Query: 1228 TAKFLSYAGKEQLIKSVLFSIQIFWSQVFILPKTITKMI 1344
K LS G+ LIK+ L ++ +++ +F +PK + + I
Sbjct: 777 KGKLLSLGGRLTLIKASLSNLPLYYMSLFPVPKGVIEKI 815
Score = 38.9 bits (89), Expect(5) = 1e-48
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = +3
Query: 66 IKAEIVSFYQALLRSTTPELPSIDPRVMLNWSSLSKTQQLDLIAFITPDDVLMDLKEMDE 245
IK E +F++ + + + P+++ L+ LS+ Q LI T +++ +
Sbjct: 387 IKKEARAFFKKIFKEDHVKRPTLEN---LHLKRLSQNQANSLITPFTTEEIDTAVSSCAS 443
Query: 246 NKALGCDGLNVCFFKKAWSVVGNEV 320
+KA G DG N F K AW ++ ++
Sbjct: 444 DKAPGPDGFNFKFVKSAWDIIKTDI 468
Score = 33.5 bits (75), Expect(5) = 1e-48
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
+ R F W G R ++VS + +PK +GGL +IL N + K +W L
Sbjct: 818 LMRAFLWCGDFGKRPFSMVSWSIVQQPKTSGGLGIGNILHKNLSLLFKWIWRL 870
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 94.7 bits (234), Expect(4) = 1e-48
Identities = 44/114 (38%), Positives = 70/114 (61%)
Frame = +1
Query: 334 FFETGIMFKTISCAIITLVLKVKNPSTVRKFRPITRCTVLYKLIFKIITHRMQCIMPHII 513
FF G + ++ IITLV KV NP+T+ FRPI+ C YK+I K++ +R++ + I+
Sbjct: 320 FFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIV 379
Query: 514 DNNQTAYVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFL 675
+Q+ ++P R I DNI+ + E++ Y + PRC VD KA D++EW F+
Sbjct: 380 GPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFI 433
Score = 93.6 bits (231), Expect(4) = 1e-48
Identities = 83/288 (28%), Positives = 125/288 (43%), Gaps = 18/288 (6%)
Frame = +2
Query: 695 HFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLLE 874
+ P+ I WI SC+ + +S+ +N F ++GL QG+ LSPYLFV+ ME + ++
Sbjct: 441 NIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQ 500
Query: 875 SLDSDKYC-KYHPRCSRLKIIQLEFADNLLLFSRGDPESIQXXXXXXXXXXXXXXEGKFE 1051
+ C +YH RC +L + L FAD+LL+F GD S++
Sbjct: 501 RRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANV 560
Query: 1052 *KFHLFWKGQA*GAGSDFTCSQREIFLLGTWEFH----------------SVLKDYPSFN 1183
+ +F G G SD + Q F LGT S L D
Sbjct: 561 SESKIFLAG-VDGNSSD-SVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETR 618
Query: 1184 VSHWWTKSWAELQAGQLSSYLMQEKNNSSRVYSSPYKYSGLR-CSYYQKRLLR*SICRRF 1360
+ W K + AG+L L+Q +S +VY + + + +KRL R F
Sbjct: 619 IKSWENKVLS--FAGRLQ--LIQSVLSSIQVYWASHLILPKKVLKDIEKRL------RCF 668
Query: 1361 HWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
W G GR V+ ++C PK GGL D+ WNK + +W+L
Sbjct: 669 LWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNL 716
Score = 45.4 bits (106), Expect(4) = 1e-48
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 204 TPDDVLMDLKEMDENKALGCDGLNVCFFKKAWSVVGNEVIKAVL 335
T DD+ M+ NK+ G DG N CFF+KAW V+G+ V+ A +
Sbjct: 274 THDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAV 317
Score = 30.0 bits (66), Expect(4) = 1e-48
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 1509 NKKDKLWVRWVHSFYIKGQSTWPI-LPE*ASWVVLKIFKSRQ 1631
+ W WV + +KG S W LP SW K+ K R+
Sbjct: 718 SSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRE 759
>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
Length = 382
Score = 87.0 bits (214), Expect(5) = 7e-48
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +2
Query: 692 LHFPTKFIFWILSCVITVSYSIMLNSYPLESFEAKKGLIQGNSLSPYLFVVMMEYFNRLL 871
+ P++F+ WI+ CV T S+S+ +N F++K GL QG SLSPYLFV+ M+ ++L
Sbjct: 69 MDIPSEFVHWIMLCVTTASFSVQVNGELAGYFQSKCGLRQGCSLSPYLFVISMDVLAKML 128
Query: 872 ESLDSDKYCKYHPRCSRLKIIQLEFADNLLLFS-RGDPESI 991
+ K YHPRC + + L FAD+L++FS G P S+
Sbjct: 129 DKAAGAKKYGYHPRCKDMGLTHLSFADDLMIFSDAGVPSSL 169
Score = 74.3 bits (181), Expect(5) = 7e-48
Identities = 39/80 (48%), Positives = 51/80 (63%)
Frame = +1
Query: 1105 YMFTKGDLPFRYLGVPLSTKRLSIIQC*PLVDKIMGRVTSWTAKFLSYAGKEQLIKSVLF 1284
Y F G LP RYLG+PL TKRL+ L+++I ++ SWTA++LSYAG+ LI SVL+
Sbjct: 177 YHFDVGHLPVRYLGLPLVTKRLTSTDYRSLLEQIKKKIGSWTARYLSYAGRLSLITSVLW 236
Query: 1285 SIQIFWSQVFILPKTITKMI 1344
S FW F LP+ K I
Sbjct: 237 STCNFWLSAFRLPRGCIKEI 256
Score = 51.6 bits (122), Expect(5) = 7e-48
Identities = 21/52 (40%), Positives = 36/52 (69%)
Frame = +1
Query: 532 YVPRRMIYDNIIFSHELVKRYTRKVISPRCMMKVDTQKAYDSIEWPFLEKIL 687
+V R++ +N++ + ELVK Y ++ IS R +K+D KA+DS++W FL +L
Sbjct: 15 FVKDRLLIENLLLATELVKDYHKESISSRYAIKIDISKAFDSVQWSFLRNVL 66
Score = 39.7 bits (91), Expect(5) = 7e-48
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 1346 ICRRFHWIGKTKGRKKALVS*EQLCKPKVTGGLNTTDILEWNKEAIAKLLWSL 1504
+C F W G KA +S +CKPK GGL + E N KL+W L
Sbjct: 259 LCSAFLWSGPDLNPHKAKLSWVDVCKPKQEGGLGLRPLKEINDVCCLKLIWRL 311
Score = 28.9 bits (63), Expect(5) = 7e-48
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 1518 DKLWVRWVHSFYIKGQSTWPI--LPE*ASWVVLKIFKSR 1628
+ LWV+W+ + +K + W + SW+ K+ K R
Sbjct: 316 NSLWVQWIEKYLLKADTFWSVKATTNRGSWMWSKLIKYR 354