BLASTX nr result
ID: Atropa21_contig00017865
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00017865
(582 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004252687.1| PREDICTED: mediator of RNA polymerase II tra... 82 1e-13
ref|XP_006362546.1| PREDICTED: mediator of RNA polymerase II tra... 80 5e-13
ref|XP_006354095.1| PREDICTED: mediator of RNA polymerase II tra... 76 7e-12
gb|AAF65166.2|AF166494_1 putative phloem transcription factor M1... 75 9e-12
dbj|BAJ34376.1| unnamed protein product [Thellungiella halophila] 74 2e-11
ref|XP_006415884.1| hypothetical protein EUTSA_v10006778mg [Eutr... 74 4e-11
ref|XP_006306776.1| hypothetical protein CARUB_v10008315mg [Caps... 74 4e-11
gb|AAG50810.1|AC079281_12 hypothetical protein [Arabidopsis thal... 74 4e-11
ref|NP_001077596.1| mediator of RNA polymerase II transcription ... 74 4e-11
ref|NP_173925.3| mediator of RNA polymerase II transcription sub... 74 4e-11
ref|XP_004173267.1| PREDICTED: mediator of RNA polymerase II tra... 72 1e-10
ref|XP_004135110.1| PREDICTED: mediator of RNA polymerase II tra... 72 1e-10
ref|XP_002890684.1| hypothetical protein ARALYDRAFT_472815 [Arab... 72 1e-10
dbj|BAD36509.1| putative SMA-9 class B [Oryza sativa Japonica Gr... 72 1e-10
emb|CBI27055.3| unnamed protein product [Vitis vinifera] 71 2e-10
ref|XP_002278845.1| PREDICTED: uncharacterized protein LOC100259... 71 2e-10
ref|XP_004956526.1| PREDICTED: mediator of RNA polymerase II tra... 71 2e-10
ref|XP_006661102.1| PREDICTED: mediator of RNA polymerase II tra... 70 4e-10
ref|XP_006573257.1| PREDICTED: mediator of RNA polymerase II tra... 70 4e-10
ref|XP_006573255.1| PREDICTED: mediator of RNA polymerase II tra... 70 4e-10
>ref|XP_004252687.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Solanum lycopersicum]
Length = 805
Score = 82.0 bits (201), Expect = 1e-13
Identities = 71/201 (35%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 595 KQYVGKADFLVFRAMNQHGFLSQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 654
Query: 401 AELEPMIPN--------QQLPAHHPRPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 246
+P IP+ QQL A HP+ ++
Sbjct: 655 VVFKPQIPSQQQQQQQQQQLQAQHPQLQQ---------QQQQQQQHLTQLQQQPLQQLQQ 705
Query: 245 XXXQTPWPPLQRQLNVPLQQQSKVPRI-------------YPXXXXXXXXXXXXXXXXXQ 105
Q P LQ+Q +PL QQS+VP++ P Q
Sbjct: 706 QQQQQPLMQLQQQQQIPL-QQSQVPQMQQQQIHQMQQQQQIPQMQQQQQIPQMQQQQQQQ 764
Query: 104 PIVGTAVINQAYMQGTGRLQI 42
P+VGT +NQ YMQG R Q+
Sbjct: 765 PMVGTG-MNQTYMQGPARSQL 784
>ref|XP_006362546.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Solanum tuberosum]
Length = 98
Score = 79.7 bits (195), Expect = 5e-13
Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = -2
Query: 581 VRQCT-GKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPH 408
VRQCT GK D L F A++ H L +QER L AVI+LPSQTL+++V DR RLIG+L+ +
Sbjct: 10 VRQCTTGKADILAFWAIDRHGVLNNLQERNLSAVIKLPSQTLFIYVADRSFRLIGLLLSN 69
Query: 407 GNAELEPMIPNQQLPAHHP 351
N P IPNQQL A P
Sbjct: 70 ENMRFRPTIPNQQLQAQPP 88
>ref|XP_006354095.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Solanum tuberosum]
Length = 819
Score = 75.9 bits (185), Expect = 7e-12
Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 616 KQYVGKADFLVFRAMNQHGFLSQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 675
Query: 401 AELEPMIPN-------QQLPAHHPRPEE 339
+P IP+ QQL A HP+ ++
Sbjct: 676 VVFKPQIPSQQQQQQQQQLQAQHPQLQQ 703
>gb|AAF65166.2|AF166494_1 putative phloem transcription factor M1 [Apium graveolens]
Length = 353
Score = 75.5 bits (184), Expect = 9e-12
Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 128 KQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 187
Query: 401 AELEPMIPNQQL------PAHHPRPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
+P I NQQ HHP+ +
Sbjct: 188 VVFKPQISNQQQHQQLQPQQHHPQLQH--------------------------QQQLQQL 221
Query: 239 XQTPWPPLQRQLNVP-LQQQSKVPRI 165
Q P P LQ+Q +P LQQQ ++P++
Sbjct: 222 QQQPLPQLQQQQQIPQLQQQQQIPQL 247
>dbj|BAJ34376.1| unnamed protein product [Thellungiella halophila]
Length = 852
Score = 74.3 bits (181), Expect = 2e-11
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 608 KQYVGKADSLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 667
Query: 401 AELEPMIPNQQ 369
+P IPNQQ
Sbjct: 668 VVFKPQIPNQQ 678
>ref|XP_006415884.1| hypothetical protein EUTSA_v10006778mg [Eutrema salsugineum]
gi|557093655|gb|ESQ34237.1| hypothetical protein
EUTSA_v10006778mg [Eutrema salsugineum]
Length = 852
Score = 73.6 bits (179), Expect = 4e-11
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 608 KQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 667
Query: 401 AELEPMIPNQQ 369
+P IPNQQ
Sbjct: 668 VVFKPQIPNQQ 678
>ref|XP_006306776.1| hypothetical protein CARUB_v10008315mg [Capsella rubella]
gi|482575487|gb|EOA39674.1| hypothetical protein
CARUB_v10008315mg [Capsella rubella]
Length = 827
Score = 73.6 bits (179), Expect = 4e-11
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 614 KQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 673
Query: 401 AELEPMIPNQQ 369
+P IPNQQ
Sbjct: 674 VVFKPQIPNQQ 684
>gb|AAG50810.1|AC079281_12 hypothetical protein [Arabidopsis thaliana]
Length = 534
Score = 73.6 bits (179), Expect = 4e-11
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 310 KQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 369
Query: 401 AELEPMIPNQQ 369
+P IPNQQ
Sbjct: 370 VVFKPQIPNQQ 380
>ref|NP_001077596.1| mediator of RNA polymerase II transcription subunit 25 [Arabidopsis
thaliana] gi|332192519|gb|AEE30640.1| mediator of RNA
polymerase II transcription subunit 25 [Arabidopsis
thaliana]
Length = 727
Score = 73.6 bits (179), Expect = 4e-11
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 503 KQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 562
Query: 401 AELEPMIPNQQ 369
+P IPNQQ
Sbjct: 563 VVFKPQIPNQQ 573
>ref|NP_173925.3| mediator of RNA polymerase II transcription subunit 25 [Arabidopsis
thaliana] gi|75145501|sp|Q7XYY2.1|MED25_ARATH RecName:
Full=Mediator of RNA polymerase II transcription subunit
25; Short=AtMED25; AltName: Full=Phytochrome and
flowering time 1 protein; AltName: Full=Phytochrome and
flowering time regulatory protein 1
gi|32478899|gb|AAO39425.1| phytochrome and flowering
time 1 protein [Arabidopsis thaliana]
gi|332192518|gb|AEE30639.1| mediator of RNA polymerase
II transcription subunit 25 [Arabidopsis thaliana]
Length = 836
Score = 73.6 bits (179), Expect = 4e-11
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 612 KQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 671
Query: 401 AELEPMIPNQQ 369
+P IPNQQ
Sbjct: 672 VVFKPQIPNQQ 682
>ref|XP_004173267.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Cucumis sativus]
Length = 238
Score = 72.0 bits (175), Expect = 1e-10
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 15 KQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 74
Query: 401 AELEPMIPNQQLPAHHPRPEE 339
+P I +QQ H + ++
Sbjct: 75 VVFKPQISSQQQQQHQMQQQQ 95
>ref|XP_004135110.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Cucumis sativus]
Length = 858
Score = 72.0 bits (175), Expect = 1e-10
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 619 KQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 678
Query: 401 AELEPMIPNQQLPAHHPRPEE 339
+P I +QQ H + ++
Sbjct: 679 VVFKPQISSQQQQQHQMQQQQ 699
>ref|XP_002890684.1| hypothetical protein ARALYDRAFT_472815 [Arabidopsis lyrata subsp.
lyrata] gi|297336526|gb|EFH66943.1| hypothetical protein
ARALYDRAFT_472815 [Arabidopsis lyrata subsp. lyrata]
Length = 832
Score = 72.0 bits (175), Expect = 1e-10
Identities = 43/87 (49%), Positives = 54/87 (62%), Gaps = 7/87 (8%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++Q++KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 612 KQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 671
Query: 401 AELEPMIPN------QQLPAHHPRPEE 339
+P IPN QQL H + ++
Sbjct: 672 VVFKPQIPNPQQQQQQQLQQQHQQQQQ 698
>dbj|BAD36509.1| putative SMA-9 class B [Oryza sativa Japonica Group]
gi|215769266|dbj|BAH01495.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 842
Score = 71.6 bits (174), Expect = 1e-10
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFR + H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 584 KQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDM 643
Query: 401 AELEPMIPNQQLP 363
+P +P QQ P
Sbjct: 644 VVFKPQVPTQQPP 656
>emb|CBI27055.3| unnamed protein product [Vitis vinifera]
Length = 815
Score = 71.2 bits (173), Expect = 2e-10
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 614 KQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 673
Query: 401 AELEPMIPNQQLPAH 357
+P I N Q H
Sbjct: 674 VVFKPQITNSQQQQH 688
>ref|XP_002278845.1| PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera]
Length = 827
Score = 71.2 bits (173), Expect = 2e-10
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 626 KQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDM 685
Query: 401 AELEPMIPNQQLPAH 357
+P I N Q H
Sbjct: 686 VVFKPQITNSQQQQH 700
>ref|XP_004956526.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Setaria italica]
Length = 773
Score = 70.9 bits (172), Expect = 2e-10
Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFR + H FL ++QE+KL AVIQLPSQTL L + D+ RLIG+L P
Sbjct: 611 KQYVGKADLLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSMSDKAGRLIGMLFPGDM 670
Query: 401 AELEPMIPNQQLP 363
+P +P QQ P
Sbjct: 671 VVFKPQVPTQQPP 683
>ref|XP_006661102.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like [Oryza brachyantha]
Length = 866
Score = 70.1 bits (170), Expect = 4e-10
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFR + H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 561 KQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDM 620
Query: 401 AELEPMIPNQQ 369
+P +P QQ
Sbjct: 621 VVFKPQVPTQQ 631
>ref|XP_006573257.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like isoform X3 [Glycine max]
Length = 725
Score = 70.1 bits (170), Expect = 4e-10
Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 516 KQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDM 575
Query: 401 AELEPMIPNQQLPAH 357
+P + +QQ H
Sbjct: 576 VVFKPQLSSQQQQQH 590
>ref|XP_006573255.1| PREDICTED: mediator of RNA polymerase II transcription subunit
25-like isoform X1 [Glycine max]
gi|571434654|ref|XP_006573256.1| PREDICTED: mediator of
RNA polymerase II transcription subunit 25-like isoform
X2 [Glycine max]
Length = 832
Score = 70.1 bits (170), Expect = 4e-10
Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = -2
Query: 578 RQCTGKVDRLVFRAMELHAFLQKVQERKLGAVIQLPSQTLYLFV-DRPDRLIGVLVPHGN 402
+Q GK D LVFRAM H FL ++QE+KL AVIQLPSQTL L V D+ RLIG+L P
Sbjct: 623 KQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDM 682
Query: 401 AELEPMIPNQQLPAH 357
+P + +QQ H
Sbjct: 683 VVFKPQLSSQQQQQH 697