BLASTX nr result
ID: Atropa21_contig00017518
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00017518
(774 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom... 295 1e-77
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g... 281 2e-73
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 168 2e-39
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] 150 5e-34
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 149 1e-33
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 149 1e-33
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 146 7e-33
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35] 146 9e-33
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa] 145 2e-32
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila] 145 2e-32
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea] 143 6e-32
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana] 142 1e-31
dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana] 141 3e-31
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis] 140 6e-31
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica] 136 7e-30
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca... 135 2e-29
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 135 2e-29
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ... 131 3e-28
ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citr... 130 5e-28
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr... 130 5e-28
>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
tuberosum]
Length = 905
Score = 295 bits (755), Expect = 1e-77
Identities = 163/261 (62%), Positives = 173/261 (66%), Gaps = 4/261 (1%)
Frame = +2
Query: 2 PNSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSK 181
PNSR SSS GNQAKNVNQQ NIAPKESKQA+EPKSEPND+AEDSEDDKPLSARVPSGLSK
Sbjct: 123 PNSRPSSSAGNQAKNVNQQSNIAPKESKQAIEPKSEPNDEAEDSEDDKPLSARVPSGLSK 182
Query: 182 SNSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKPKI 361
SNSIHAN V GTS SVQK+RPPKKEDSDDEIPLASRFQMKS+AGASTSKFS SEE KPKI
Sbjct: 183 SNSIHANNVLGTSTSVQKSRPPKKEDSDDEIPLASRFQMKSSAGASTSKFSSSEEVKPKI 242
Query: 362 QQNGLPSTTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQASVXXXXXXXXXXXXIP 541
+QNGLPS TVLSKRPPGEV + +K SV +P
Sbjct: 243 RQNGLPSATVLSKRPPGEVSLLLRLQLKSLDFLMHLHLFLVSNXSVKTEKKTEDDDDEVP 302
Query: 542 ISQRI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQK 709
+SQRI LQPSSGDGQK
Sbjct: 303 LSQRIKKAVASASASASKVSSVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQK 362
Query: 710 WTTLEHSGVIFPPPYKPHGVK 772
WTTLEH+GVIFPPPYKPHGVK
Sbjct: 363 WTTLEHNGVIFPPPYKPHGVK 383
>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
topoisomerase I [Nicotiana tabacum]
Length = 852
Score = 281 bits (719), Expect = 2e-73
Identities = 156/257 (60%), Positives = 170/257 (66%)
Frame = +2
Query: 2 PNSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSK 181
PNSR S+S GNQAK+VNQQ I P E KQAVEPKSEPND+AEDSEDDKPLSAR+ SGLSK
Sbjct: 100 PNSRPSASAGNQAKDVNQQSKIVPNEPKQAVEPKSEPNDEAEDSEDDKPLSARLSSGLSK 159
Query: 182 SNSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKPKI 361
SNS HANKV GTSASVQK+RPPKKEDSDDEIPLASRFQ+KSNAGASTSK S SEE KPKI
Sbjct: 160 SNSSHANKVLGTSASVQKSRPPKKEDSDDEIPLASRFQLKSNAGASTSKSSNSEEVKPKI 219
Query: 362 QQNGLPSTTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQASVXXXXXXXXXXXXIP 541
+QNGLPSTTVLSKRPPG+V + +K +ASV +P
Sbjct: 220 RQNGLPSTTVLSKRPPGDVSLLLRLQLKSLGFLMHLHLFRVSEASVKPEKKTEDDDDDVP 279
Query: 542 ISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTTL 721
ISQRI LQPSSG+GQKWTTL
Sbjct: 280 ISQRI-KKSVASASKLSSAKKATKVVSSSMKTKKKLKKSKYSKSSKLQPSSGEGQKWTTL 338
Query: 722 EHSGVIFPPPYKPHGVK 772
H+GVIFPPPYKPHGVK
Sbjct: 339 VHNGVIFPPPYKPHGVK 355
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 168 bits (425), Expect = 2e-39
Identities = 113/276 (40%), Positives = 156/276 (56%), Gaps = 20/276 (7%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNI-APKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSK 181
N + SSS +++K+ ++Q I KE K+ V P +EP D SED+KPLSAR+ +GL+K
Sbjct: 100 NPKVSSSSDDRSKHSSKQNTINVVKEEKELVNPAAEPYGD---SEDEKPLSARLFTGLTK 156
Query: 182 SNSIHANK--VPGTSASVQKARPP---KKEDSDDEIPLASRFQMKSNAGASTSKFSKSEE 346
+S +ANK + + AS+ +P +DSDDEIPL+S+F++K+NAG ST K +S++
Sbjct: 157 GSSNNANKGLINSSPASLPVPKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYESDD 216
Query: 347 AKPKI---QQNGL-----PSTTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQAS-V 499
K + QQNG S+ ++KRP GEVKS+ Q+SVKKP+LSDASTPV++KQAS
Sbjct: 217 NKTLVSNFQQNGSINRGSKSSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQASKK 276
Query: 500 XXXXXXXXXXXXIPISQRI-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 664
+PISQR+
Sbjct: 277 AEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQKVTKVVSSSMKKASKKFKKVVKKSKY 336
Query: 665 XXXXXLQPSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ PSSG+G+KW TL H+GVIFPPPYKPHGVK
Sbjct: 337 SKSSKVPPSSGEGKKWNTLVHNGVIFPPPYKPHGVK 372
>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 150 bits (379), Expect = 5e-34
Identities = 106/296 (35%), Positives = 139/296 (46%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPLSAR SK
Sbjct: 107 NSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKG 166
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 167 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKKPLAA 226
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++ +KRPPGE KS Q+SVKKP+LS
Sbjct: 227 KVQQNGSASRDGPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPEP 286
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ +PISQRI
Sbjct: 287 KAEDDDDNIPLSQRGKKSQSATSKPKDDDDDNVPISQRIKKSPASVSKSSVPVKKASTVV 346
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GVIFPPPYKPHGVK
Sbjct: 347 SSSLKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVK 402
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 149 bits (376), Expect = 1e-33
Identities = 105/296 (35%), Positives = 139/296 (46%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPLSAR SK
Sbjct: 108 NSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+Q NG S ++ +KRPPGEVKS Q+S+KKP+LS
Sbjct: 228 KVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ +PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GVIFPPPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVK 403
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 149 bits (376), Expect = 1e-33
Identities = 105/296 (35%), Positives = 139/296 (46%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPLSAR SK
Sbjct: 108 NSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+Q NG S ++ +KRPPGEVKS Q+S+KKP+LS
Sbjct: 228 KVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ +PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GVIFPPPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVK 403
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 146 bits (369), Expect = 7e-33
Identities = 99/274 (36%), Positives = 134/274 (48%), Gaps = 18/274 (6%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPN--IAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLS 178
NS+ S+S + K NQ + + +E + S +D+EDS+D KPLS R + S
Sbjct: 122 NSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSASSS 181
Query: 179 KSNSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP- 355
K N+ +K + P+ EDSDDE PL+SRF +KS G STSK S++ KP
Sbjct: 182 KGNTNQVSK---------EGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPL 232
Query: 356 --KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQASV-X 502
K+Q NG + + +KRPPG++KS+ Q SVKKP+LS + P + KQASV
Sbjct: 233 AKKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKP 292
Query: 503 XXXXXXXXXXXIPISQRI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670
+PISQRI
Sbjct: 293 EPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSKYSK 352
Query: 671 XXXLQPSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ PSSG+G+KW LEH+GVIFPPPYKPHG+K
Sbjct: 353 SSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIK 386
>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 146 bits (368), Expect = 9e-33
Identities = 104/296 (35%), Positives = 137/296 (46%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR SK
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS
Sbjct: 228 KVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GVIFPPPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVK 403
>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 145 bits (365), Expect = 2e-32
Identities = 103/296 (34%), Positives = 137/296 (46%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR SK
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS
Sbjct: 228 KVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GV+FPPPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVK 403
>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
Length = 926
Score = 145 bits (365), Expect = 2e-32
Identities = 103/296 (34%), Positives = 137/296 (46%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR SK
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSHDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS
Sbjct: 228 KVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSTITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GV+FPPPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVK 403
>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 143 bits (361), Expect = 6e-32
Identities = 103/296 (34%), Positives = 136/296 (45%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR SK
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+Q NG S ++ +KR PGEVKS Q+S+KKP+LS
Sbjct: 228 KVQPNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GVIFPPPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVK 403
>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 142 bits (358), Expect = 1e-31
Identities = 102/296 (34%), Positives = 136/296 (45%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR S
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSMG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS
Sbjct: 228 KVQQNGSASPEGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDHAPISQRIKKSPVSVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GV+FPPPYKPHGVK
Sbjct: 348 STSLKKVNKKSKKVIRKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFPPPYKPHGVK 403
>dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
Length = 920
Score = 141 bits (355), Expect = 3e-31
Identities = 102/296 (34%), Positives = 136/296 (45%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR SK
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAA 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS
Sbjct: 228 KVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GV+F PPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFLPPYKPHGVK 403
>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
Length = 926
Score = 140 bits (352), Expect = 6e-31
Identities = 102/296 (34%), Positives = 136/296 (45%), Gaps = 40/296 (13%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPL AR SK
Sbjct: 108 NSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKG 167
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 168 KSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAT 227
Query: 356 KIQQNGLPS--------TTVLSKRPPGEVKSAAQASVKKPRLS----------------- 460
K+QQNG S ++L+KR PGEVKS Q+S+KK +LS
Sbjct: 228 KVQQNGSASRDGPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSISNKQAAVKPEP 287
Query: 461 -----DASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXX 619
D + P+S K++ PISQRI
Sbjct: 288 KAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVKKASTVV 347
Query: 620 XXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GV+F PPYKPHGVK
Sbjct: 348 SPSLKKVNKKSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVMFLPPYKPHGVK 403
>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 136 bits (343), Expect = 7e-30
Identities = 102/298 (34%), Positives = 135/298 (45%), Gaps = 42/298 (14%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ S+S + AK N + A + P ++ N ++E S+D+KPLSAR SK
Sbjct: 107 NSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKG 166
Query: 185 NSIHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP--- 355
S HANK G S S+++ + EDS+DE PL+ RF KS+ G STSK S+E KP
Sbjct: 167 KSNHANKEGGDSCSIRRRVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAA 226
Query: 356 KIQQNGL--------PSTTVLSKRPPGEVKSA-------------------AQASVK--- 445
K+QQNG S ++ +KRPPGEVKS QA+VK
Sbjct: 227 KVQQNGSVSRDGPMNKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEP 286
Query: 446 --KPRLSDASTPVSS--KQASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXX 613
K D + P+S K++ +PI+QRI
Sbjct: 287 EPKAEDDDDNIPLSQRGKKSQAATSKPKDEDDDNVPIAQRIKKSPASVSKSSAPVKKAST 346
Query: 614 XXXXXXXXXXXXXXXXXXXXXXLQ-----PSSGDGQKWTTLEHSGVIFPPPYKPHGVK 772
+ P SG+GQKWTTL H+GVIFPPPY PHGVK
Sbjct: 347 VVSPSLKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVK 404
>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
isoform 3 [Theobroma cacao]
Length = 836
Score = 135 bits (339), Expect = 2e-29
Identities = 99/280 (35%), Positives = 134/280 (47%), Gaps = 24/280 (8%)
Frame = +2
Query: 5 NSRTSSSVGNQAKN-VNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSK 181
N + S+S+ +Q+K + Q A KE + ++ +EPN D +D +D PLSAR+ K
Sbjct: 109 NFKASTSLNDQSKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARL-----K 163
Query: 182 SNSIHANKVPGTSASVQKARPPKK-------EDSDDEIPLASRFQMKSNAGASTSKFSKS 340
S NK TSA Q R K ED DDE PL++RF +KSN G S+S+
Sbjct: 164 GISNQGNKGASTSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDC 223
Query: 341 EEAKP---KIQQNG-------LPSTTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQ 490
+E KP KIQQNG S+T+ KRP + S+ +S KKP+ SDA T + +KQ
Sbjct: 224 DEKKPLASKIQQNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQ 283
Query: 491 ASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670
+V +PI+QR+
Sbjct: 284 VTV-KAEKADEDDDHMPIAQRMKKSTASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKS 342
Query: 671 XXXLQ-----PSSGDGQ-KWTTLEHSGVIFPPPYKPHGVK 772
++ PSSGDGQ KW+TL H+GVIFP PY PHGVK
Sbjct: 343 SKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVK 382
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 135 bits (339), Expect = 2e-29
Identities = 99/280 (35%), Positives = 134/280 (47%), Gaps = 24/280 (8%)
Frame = +2
Query: 5 NSRTSSSVGNQAKN-VNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSK 181
N + S+S+ +Q+K + Q A KE + ++ +EPN D +D +D PLSAR+ K
Sbjct: 109 NFKASTSLNDQSKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARL-----K 163
Query: 182 SNSIHANKVPGTSASVQKARPPKK-------EDSDDEIPLASRFQMKSNAGASTSKFSKS 340
S NK TSA Q R K ED DDE PL++RF +KSN G S+S+
Sbjct: 164 GISNQGNKGASTSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDC 223
Query: 341 EEAKP---KIQQNG-------LPSTTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQ 490
+E KP KIQQNG S+T+ KRP + S+ +S KKP+ SDA T + +KQ
Sbjct: 224 DEKKPLASKIQQNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQ 283
Query: 491 ASVXXXXXXXXXXXXIPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670
+V +PI+QR+
Sbjct: 284 VTV-KAEKADEDDDHMPIAQRMKKSTASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKS 342
Query: 671 XXXLQ-----PSSGDGQ-KWTTLEHSGVIFPPPYKPHGVK 772
++ PSSGDGQ KW+TL H+GVIFP PY PHGVK
Sbjct: 343 SKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVK 382
>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
putative [Ricinus communis]
Length = 891
Score = 131 bits (329), Expect = 3e-28
Identities = 103/282 (36%), Positives = 136/282 (48%), Gaps = 26/282 (9%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQ---------PNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSA 157
NS+ SSS+ Q K ++Q + P+ ++V+ +++ N D EDSEDD PLSA
Sbjct: 101 NSKGSSSLDEQLKQASKQNASNVVKDVSSAKPEIGLKSVKHETKSNGDDEDSEDDLPLSA 160
Query: 158 RVPSGLSKSNSIHANKVPGTSASVQKARPPKKEDSDDE-IPLASRFQMKSNAGASTSKFS 334
R K N+ + +KV V + K EDSDD+ +PL SRF MKS AG S +K +
Sbjct: 161 R-----RKGNTNNVSKV------VTAPKRVKDEDSDDDKVPLCSRFPMKSTAGTSGNKPN 209
Query: 335 KSEEAKP---KIQQNGLPS-------TTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSS 484
E KP K+QQNG S + +KRP + S+ Q+S+KKP+LS ST
Sbjct: 210 NISEKKPLPSKVQQNGSTSKDKQQKAPLIPTKRPLDKANSSEQSSIKKPKLSAGSTITKV 269
Query: 485 KQASVXXXXXXXXXXXXIPISQR-----IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 649
KQA+V IPI+QR
Sbjct: 270 KQATV---KAEEDDPDDIPIAQRKKSLGSSESKLSSAKQKAIKVVSSSFKKPIKKNKKQM 326
Query: 650 XXXXXXXXXXLQPSSGDGQ-KWTTLEHSGVIFPPPYKPHGVK 772
+QPSS DGQ KWTTL H+GVIFPPPYKPHG+K
Sbjct: 327 KNTKYSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKPHGIK 368
>ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|557555706|gb|ESR65720.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 824
Score = 130 bits (327), Expect = 5e-28
Identities = 101/273 (36%), Positives = 131/273 (47%), Gaps = 17/273 (6%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ SS + ++ K + Q +A + ++ + +DD DSEDDKPLSAR+
Sbjct: 112 NSKESSPLDDRLKQLPQHNALAVVKKEEIKDGNGLKSDD-NDSEDDKPLSARLKGNTKNV 170
Query: 185 NS-IHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP-- 355
N I A+K + V P EDSDDE+PL+SRF KSNAG S +K S+E KP
Sbjct: 171 NQGIGASKADAAISEVNVKTDP--EDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLA 227
Query: 356 -KIQQNGLPS-------TTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQASVXXXX 511
K+QQNG S ++V KRP + S+ +S KKP++SD S V KQ +V
Sbjct: 228 SKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTV-KVE 286
Query: 512 XXXXXXXXIPISQRI-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 676
IPISQR+
Sbjct: 287 KKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKST 346
Query: 677 XLQPSSGDGQ-KWTTLEHSGVIFPPPYKPHGVK 772
+ P SGDGQ KWTTL H+GVIFPPPY PHGVK
Sbjct: 347 KMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVK 379
>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|567920950|ref|XP_006452481.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555705|gb|ESR65719.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555707|gb|ESR65721.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 902
Score = 130 bits (327), Expect = 5e-28
Identities = 101/273 (36%), Positives = 131/273 (47%), Gaps = 17/273 (6%)
Frame = +2
Query: 5 NSRTSSSVGNQAKNVNQQPNIAPKESKQAVEPKSEPNDDAEDSEDDKPLSARVPSGLSKS 184
NS+ SS + ++ K + Q +A + ++ + +DD DSEDDKPLSAR+
Sbjct: 112 NSKESSPLDDRLKQLPQHNALAVVKKEEIKDGNGLKSDD-NDSEDDKPLSARLKGNTKNV 170
Query: 185 NS-IHANKVPGTSASVQKARPPKKEDSDDEIPLASRFQMKSNAGASTSKFSKSEEAKP-- 355
N I A+K + V P EDSDDE+PL+SRF KSNAG S +K S+E KP
Sbjct: 171 NQGIGASKADAAISEVNVKTDP--EDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLA 227
Query: 356 -KIQQNGLPS-------TTVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQASVXXXX 511
K+QQNG S ++V KRP + S+ +S KKP++SD S V KQ +V
Sbjct: 228 SKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTV-KVE 286
Query: 512 XXXXXXXXIPISQRI-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 676
IPISQR+
Sbjct: 287 KKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKST 346
Query: 677 XLQPSSGDGQ-KWTTLEHSGVIFPPPYKPHGVK 772
+ P SGDGQ KWTTL H+GVIFPPPY PHGVK
Sbjct: 347 KMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVK 379