BLASTX nr result
ID: Atropa21_contig00017281
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00017281
(823 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338046.1| PREDICTED: double-stranded RNA-binding prote... 155 5e-36
ref|XP_006338047.1| PREDICTED: double-stranded RNA-binding prote... 150 5e-34
ref|XP_004238005.1| PREDICTED: uncharacterized protein LOC101257... 142 1e-32
gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum] 142 1e-32
>ref|XP_006338046.1| PREDICTED: double-stranded RNA-binding protein 1-like isoform X1
[Solanum tuberosum]
Length = 406
Score = 155 bits (392), Expect(2) = 5e-36
Identities = 92/159 (57%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Frame = +3
Query: 3 ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
ARTALLAVQS+G P +YS+YTV+P+KKVTDL ISNQES
Sbjct: 160 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKNRFKKKQT 213
Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
N SDAS RVRTKNTGD NQA+PE+HENAAV TQGT SGPA FA TM + VP NN
Sbjct: 214 RNVSDASYRVRTKNTGDSEVQMVNQAKPEMHENAAVMTQGTGSGPAPFAGTMGDLVPSNN 273
Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVV 461
SS DYGTSNLGIN QCGGG EGN V
Sbjct: 274 LSS------------DYGTSNLGINSQCGGGVTTEGNAV 300
Score = 23.1 bits (48), Expect(2) = 5e-36
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 499 VAPVAWSSKLHV 534
+APVAW+ LHV
Sbjct: 310 LAPVAWNDNLHV 321
Score = 76.6 bits (187), Expect(2) = 6e-12
Identities = 42/70 (60%), Positives = 44/70 (62%)
Frame = +3
Query: 246 PELHENAAVTTQGTESGPASFAATMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQ 425
P LHENAAV TQGT SGPA FA TM + VP NN S D+GTSNLGIN Q
Sbjct: 325 PLLHENAAVMTQGTGSGPAPFADTMGDLVPSNNCGS------------DFGTSNLGINSQ 372
Query: 426 CGGGDMIEGN 455
CGGG EGN
Sbjct: 373 CGGGVTTEGN 382
Score = 20.8 bits (42), Expect(2) = 6e-12
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 499 VAPVAWSSKLHVL 537
VAPVA + LHVL
Sbjct: 394 VAPVACNDNLHVL 406
>ref|XP_006338047.1| PREDICTED: double-stranded RNA-binding protein 1-like isoform X2
[Solanum tuberosum]
Length = 322
Score = 150 bits (379), Expect = 5e-34
Identities = 89/157 (56%), Positives = 98/157 (62%), Gaps = 6/157 (3%)
Frame = +3
Query: 3 ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
ARTALLAVQS+G P +YS+YTV+P+KKVTDL ISNQES
Sbjct: 160 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKNRFKKKQT 213
Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
N SDAS RVRTKNTGD NQA+PE+HENAAV TQGT SGPA FA TM + VP NN
Sbjct: 214 RNVSDASYRVRTKNTGDSEVQMVNQAKPEMHENAAVMTQGTGSGPAPFADTMGDLVPSNN 273
Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGN 455
S D+GTSNLGIN QCGGG EGN
Sbjct: 274 CGS------------DFGTSNLGINSQCGGGVTTEGN 298
>ref|XP_004238005.1| PREDICTED: uncharacterized protein LOC101257657 [Solanum
lycopersicum]
Length = 433
Score = 142 bits (359), Expect(2) = 1e-32
Identities = 86/159 (54%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
Frame = +3
Query: 3 ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
ARTALLAVQS+G P +YS+YTV+P+KKVTDL ISNQES
Sbjct: 160 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQT 213
Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
N SD S VRTK GD NQA+PE+HENAAV T GT SGPA FA TM + VP NN
Sbjct: 214 RNFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNN 273
Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVV 461
SS DYGTSN+GIN QCGGG EGN V
Sbjct: 274 LSS------------DYGTSNIGINSQCGGGVTTEGNAV 300
Score = 24.3 bits (51), Expect(2) = 1e-32
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 499 VAPVAWSSKLHV 534
VAPVAW+ LHV
Sbjct: 337 VAPVAWNDNLHV 348
Score = 74.7 bits (182), Expect(2) = 2e-11
Identities = 41/68 (60%), Positives = 42/68 (61%)
Frame = +3
Query: 252 LHENAAVTTQGTESGPASFAATMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQCG 431
LHENAAV TQGT SGPA FA TM + VP NN S DYGTSNLGIN QCG
Sbjct: 354 LHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGS------------DYGTSNLGINSQCG 401
Query: 432 GGDMIEGN 455
G EGN
Sbjct: 402 EGATTEGN 409
Score = 20.8 bits (42), Expect(2) = 2e-11
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 499 VAPVAWSSKLHVL 537
VAPVA + LHVL
Sbjct: 421 VAPVACNDNLHVL 433
>gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
Length = 318
Score = 142 bits (359), Expect(2) = 1e-32
Identities = 86/159 (54%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
Frame = +3
Query: 3 ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
ARTALLAVQS+G P +YS+YTV+P+KKVTDL ISNQES
Sbjct: 45 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQT 98
Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
N SD S VRTK GD NQA+PE+HENAAV T GT SGPA FA TM + VP NN
Sbjct: 99 RNFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNN 158
Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVV 461
SS DYGTSN+GIN QCGGG EGN V
Sbjct: 159 LSS------------DYGTSNIGINSQCGGGVTTEGNAV 185
Score = 24.3 bits (51), Expect(2) = 1e-32
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 499 VAPVAWSSKLHV 534
VAPVAW+ LHV
Sbjct: 222 VAPVAWNDNLHV 233
Score = 74.7 bits (182), Expect(2) = 2e-11
Identities = 41/68 (60%), Positives = 42/68 (61%)
Frame = +3
Query: 252 LHENAAVTTQGTESGPASFAATMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQCG 431
LHENAAV TQGT SGPA FA TM + VP NN S DYGTSNLGIN QCG
Sbjct: 239 LHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGS------------DYGTSNLGINSQCG 286
Query: 432 GGDMIEGN 455
G EGN
Sbjct: 287 EGATTEGN 294
Score = 20.8 bits (42), Expect(2) = 2e-11
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 499 VAPVAWSSKLHVL 537
VAPVA + LHVL
Sbjct: 306 VAPVACNDNLHVL 318