BLASTX nr result

ID: Atropa21_contig00017281 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00017281
         (823 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006338046.1| PREDICTED: double-stranded RNA-binding prote...   155   5e-36
ref|XP_006338047.1| PREDICTED: double-stranded RNA-binding prote...   150   5e-34
ref|XP_004238005.1| PREDICTED: uncharacterized protein LOC101257...   142   1e-32
gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]           142   1e-32

>ref|XP_006338046.1| PREDICTED: double-stranded RNA-binding protein 1-like isoform X1
           [Solanum tuberosum]
          Length = 406

 Score =  155 bits (392), Expect(2) = 5e-36
 Identities = 92/159 (57%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
 Frame = +3

Query: 3   ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
           ARTALLAVQS+G  P      +YS+YTV+P+KKVTDL ISNQES                
Sbjct: 160 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKNRFKKKQT 213

Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
            N SDAS RVRTKNTGD      NQA+PE+HENAAV TQGT SGPA FA TM + VP NN
Sbjct: 214 RNVSDASYRVRTKNTGDSEVQMVNQAKPEMHENAAVMTQGTGSGPAPFAGTMGDLVPSNN 273

Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVV 461
            SS            DYGTSNLGIN QCGGG   EGN V
Sbjct: 274 LSS------------DYGTSNLGINSQCGGGVTTEGNAV 300



 Score = 23.1 bits (48), Expect(2) = 5e-36
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 499 VAPVAWSSKLHV 534
           +APVAW+  LHV
Sbjct: 310 LAPVAWNDNLHV 321



 Score = 76.6 bits (187), Expect(2) = 6e-12
 Identities = 42/70 (60%), Positives = 44/70 (62%)
 Frame = +3

Query: 246 PELHENAAVTTQGTESGPASFAATMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQ 425
           P LHENAAV TQGT SGPA FA TM + VP NN  S            D+GTSNLGIN Q
Sbjct: 325 PLLHENAAVMTQGTGSGPAPFADTMGDLVPSNNCGS------------DFGTSNLGINSQ 372

Query: 426 CGGGDMIEGN 455
           CGGG   EGN
Sbjct: 373 CGGGVTTEGN 382



 Score = 20.8 bits (42), Expect(2) = 6e-12
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 499 VAPVAWSSKLHVL 537
           VAPVA +  LHVL
Sbjct: 394 VAPVACNDNLHVL 406


>ref|XP_006338047.1| PREDICTED: double-stranded RNA-binding protein 1-like isoform X2
           [Solanum tuberosum]
          Length = 322

 Score =  150 bits (379), Expect = 5e-34
 Identities = 89/157 (56%), Positives = 98/157 (62%), Gaps = 6/157 (3%)
 Frame = +3

Query: 3   ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
           ARTALLAVQS+G  P      +YS+YTV+P+KKVTDL ISNQES                
Sbjct: 160 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKNRFKKKQT 213

Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
            N SDAS RVRTKNTGD      NQA+PE+HENAAV TQGT SGPA FA TM + VP NN
Sbjct: 214 RNVSDASYRVRTKNTGDSEVQMVNQAKPEMHENAAVMTQGTGSGPAPFADTMGDLVPSNN 273

Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGN 455
             S            D+GTSNLGIN QCGGG   EGN
Sbjct: 274 CGS------------DFGTSNLGINSQCGGGVTTEGN 298


>ref|XP_004238005.1| PREDICTED: uncharacterized protein LOC101257657 [Solanum
           lycopersicum]
          Length = 433

 Score =  142 bits (359), Expect(2) = 1e-32
 Identities = 86/159 (54%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
 Frame = +3

Query: 3   ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
           ARTALLAVQS+G  P      +YS+YTV+P+KKVTDL ISNQES                
Sbjct: 160 ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQT 213

Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
            N SD S  VRTK  GD      NQA+PE+HENAAV T GT SGPA FA TM + VP NN
Sbjct: 214 RNFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNN 273

Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVV 461
            SS            DYGTSN+GIN QCGGG   EGN V
Sbjct: 274 LSS------------DYGTSNIGINSQCGGGVTTEGNAV 300



 Score = 24.3 bits (51), Expect(2) = 1e-32
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 499 VAPVAWSSKLHV 534
           VAPVAW+  LHV
Sbjct: 337 VAPVAWNDNLHV 348



 Score = 74.7 bits (182), Expect(2) = 2e-11
 Identities = 41/68 (60%), Positives = 42/68 (61%)
 Frame = +3

Query: 252 LHENAAVTTQGTESGPASFAATMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQCG 431
           LHENAAV TQGT SGPA FA TM + VP NN  S            DYGTSNLGIN QCG
Sbjct: 354 LHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGS------------DYGTSNLGINSQCG 401

Query: 432 GGDMIEGN 455
            G   EGN
Sbjct: 402 EGATTEGN 409



 Score = 20.8 bits (42), Expect(2) = 2e-11
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 499 VAPVAWSSKLHVL 537
           VAPVA +  LHVL
Sbjct: 421 VAPVACNDNLHVL 433


>gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
          Length = 318

 Score =  142 bits (359), Expect(2) = 1e-32
 Identities = 86/159 (54%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
 Frame = +3

Query: 3   ARTALLAVQSTGLGPTNDNPNDYSAYTVIPLKKVTDLGISNQESXXXXXXXXXXXXXXXX 182
           ARTALLAVQS+G  P      +YS+YTV+P+KKVTDL ISNQES                
Sbjct: 45  ARTALLAVQSSGFAP------NYSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQT 98

Query: 183 XNGSDASNRVRTKNTGD------NQAEPELHENAAVTTQGTESGPASFAATMDNFVPCNN 344
            N SD S  VRTK  GD      NQA+PE+HENAAV T GT SGPA FA TM + VP NN
Sbjct: 99  RNFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNN 158

Query: 345 GSSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVV 461
            SS            DYGTSN+GIN QCGGG   EGN V
Sbjct: 159 LSS------------DYGTSNIGINSQCGGGVTTEGNAV 185



 Score = 24.3 bits (51), Expect(2) = 1e-32
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 499 VAPVAWSSKLHV 534
           VAPVAW+  LHV
Sbjct: 222 VAPVAWNDNLHV 233



 Score = 74.7 bits (182), Expect(2) = 2e-11
 Identities = 41/68 (60%), Positives = 42/68 (61%)
 Frame = +3

Query: 252 LHENAAVTTQGTESGPASFAATMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQCG 431
           LHENAAV TQGT SGPA FA TM + VP NN  S            DYGTSNLGIN QCG
Sbjct: 239 LHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGS------------DYGTSNLGINSQCG 286

Query: 432 GGDMIEGN 455
            G   EGN
Sbjct: 287 EGATTEGN 294



 Score = 20.8 bits (42), Expect(2) = 2e-11
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 499 VAPVAWSSKLHVL 537
           VAPVA +  LHVL
Sbjct: 306 VAPVACNDNLHVL 318


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