BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00017213
         (617 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]     107   3e-21
ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   107   3e-21
ref|NP_001275266.1| bromodomain-containing RNA-binding protein 1...   105   8e-21
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni...    88   2e-15
emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Ni...    83   5e-14
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni...    81   3e-13
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni...    81   3e-13

>emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]
          Length = 313

 Score =  107 bits (267), Expect = 3e-21
 Identities = 57/84 (67%), Positives = 58/84 (69%)
 Frame = -3

Query: 615 SKTKRQALMNNLGPPXXXXXXXXXXXSVAEADGPTTSEKNDSIKKPKKXXXXXXXXXXXX 436
           SKTKRQALMNNLGPP           SVAEADGPTTSEKNDS KK KK            
Sbjct: 188 SKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIED 247

Query: 435 XEPATHFPPVEIEKDEGGGRDQDN 364
            EPATHFPPVEIEKDEGGGRDQ+N
Sbjct: 248 DEPATHFPPVEIEKDEGGGRDQEN 271


>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
           gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
           protein Virp1a [Solanum lycopersicum]
           gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
           protein Virp1b [Solanum lycopersicum]
           gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
           protein Virp1c [Solanum lycopersicum]
           gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
           protein Virp1d [Solanum lycopersicum]
           gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
           gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  107 bits (267), Expect = 3e-21
 Identities = 57/84 (67%), Positives = 58/84 (69%)
 Frame = -3

Query: 615 SKTKRQALMNNLGPPXXXXXXXXXXXSVAEADGPTTSEKNDSIKKPKKXXXXXXXXXXXX 436
           SKTKRQALMNNLGPP           SVAEADGPTTSEKNDS KK KK            
Sbjct: 477 SKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIED 536

Query: 435 XEPATHFPPVEIEKDEGGGRDQDN 364
            EPATHFPPVEIEKDEGGGRDQ+N
Sbjct: 537 DEPATHFPPVEIEKDEGGGRDQEN 560


>ref|NP_001275266.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
           gi|57282314|emb|CAD43283.1| bromodomain-containing
           RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score =  105 bits (263), Expect = 8e-21
 Identities = 58/85 (68%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = -3

Query: 615 SKTKRQALM-NNLGPPXXXXXXXXXXXSVAEADGPTTSEKNDSIKKPKKXXXXXXXXXXX 439
           SKTKRQALM NNLGPP           SVAEADGPTTSEKNDS KKPKK           
Sbjct: 477 SKTKRQALMINNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKPKKGDVGEEDVEIE 536

Query: 438 XXEPATHFPPVEIEKDEGGGRDQDN 364
             EPATHFPPVEIEKDEGGGRDQ+N
Sbjct: 537 DDEPATHFPPVEIEKDEGGGRDQEN 561


>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana
           benthamiana]
          Length = 613

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 54/89 (60%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
 Frame = -3

Query: 615 SKTKRQALMNNLG-PPXXXXXXXXXXXSVAEADGPTTSEKNDSIKKPKK--XXXXXXXXX 445
           SKTKRQAL+NNLG PP           SVAEADGP+TSEKNDS KKPKK           
Sbjct: 486 SKTKRQALINNLGQPPSASAAASAATTSVAEADGPSTSEKNDSFKKPKKGGDAGDEDDVE 545

Query: 444 XXXXEPATHFPPVEIEKDE--GGGRDQDN 364
               EPAT FPPVEI+KDE  GGGRD DN
Sbjct: 546 IEDDEPATQFPPVEIDKDEGGGGGRDPDN 574


>emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Nicotiana
           benthamiana]
          Length = 615

 Score = 83.2 bits (204), Expect = 5e-14
 Identities = 51/93 (54%), Positives = 57/93 (61%), Gaps = 9/93 (9%)
 Frame = -3

Query: 615 SKTKRQALMNNLGPPXXXXXXXXXXXS--VAEADGPTTSEKNDSIKKPKK--XXXXXXXX 448
           SKTKRQAL+NNLG P           +  VAEAD P+TSEKNDS KKPKK          
Sbjct: 484 SKTKRQALINNLGQPPSASAAASAATTTSVAEADAPSTSEKNDSFKKPKKGGDAGDEDDV 543

Query: 447 XXXXXEPATHFPPVEIEKDEGG-----GRDQDN 364
                EPATHFPPVEI+KDEGG     G+D+DN
Sbjct: 544 EIEDDEPATHFPPVEIDKDEGGGGGGVGQDRDN 576


>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
          Length = 616

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 51/88 (57%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
 Frame = -3

Query: 615 SKTKRQALMNNLGPPXXXXXXXXXXXS--VAEADGPTTSEKNDSIKKPKK--XXXXXXXX 448
           SKTKRQAL+NNLG P           +  VAEADGP+TSEKNDS KKPKK          
Sbjct: 486 SKTKRQALINNLGQPPSASAAASAATTTSVAEADGPSTSEKNDSFKKPKKGGDAGDEDDV 545

Query: 447 XXXXXEPATHFPPVEIE--KDEGGGRDQ 370
                EPATHFPPVEIE  KDEGGG  Q
Sbjct: 546 EIEDDEPATHFPPVEIEIDKDEGGGGGQ 573


>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
          Length = 617

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 51/88 (57%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
 Frame = -3

Query: 615 SKTKRQALMNNLGPPXXXXXXXXXXXS--VAEADGPTTSEKNDSIKKPKK--XXXXXXXX 448
           SKTKRQAL+NNLG P           +  VAEADGP+TSEKNDS KKPKK          
Sbjct: 487 SKTKRQALINNLGQPPSASAAASAATTTSVAEADGPSTSEKNDSFKKPKKGGDAGDEDDV 546

Query: 447 XXXXXEPATHFPPVEIE--KDEGGGRDQ 370
                EPATHFPPVEIE  KDEGGG  Q
Sbjct: 547 EIEDDEPATHFPPVEIEIDKDEGGGGGQ 574