BLASTX nr result
ID: Atropa21_contig00017174
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00017174
(900 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338046.1| PREDICTED: double-stranded RNA-binding prote... 152 6e-35
ref|XP_006338047.1| PREDICTED: double-stranded RNA-binding prote... 145 2e-32
ref|XP_004238005.1| PREDICTED: uncharacterized protein LOC101257... 139 2e-31
gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum] 139 2e-31
>ref|XP_006338046.1| PREDICTED: double-stranded RNA-binding protein 1-like isoform X1
[Solanum tuberosum]
Length = 406
Score = 152 bits (383), Expect(2) = 6e-35
Identities = 90/158 (56%), Positives = 99/158 (62%), Gaps = 6/158 (3%)
Frame = -3
Query: 898 ARTALLAVQSCSLGPDDKPNDYSAYTVVPLKKVSDLGISNQESXXXXXXXXXXXXXXXXK 719
ARTALLAVQS P+ YS+YTVVP+KKV+DL ISNQES +
Sbjct: 160 ARTALLAVQSSGFAPN-----YSSYTVVPMKKVTDLAISNQESAAALKPKKNRFKKKQTR 214
Query: 718 NGSDASNRVRTKNTGD------NQVEPELHENAAVTTQGTESGPASFAGTMDNFVPCNNG 557
N SDAS RVRTKNTGD NQ +PE+HENAAV TQGT SGPA FAGTM + VP NN
Sbjct: 215 NVSDASYRVRTKNTGDSEVQMVNQAKPEMHENAAVMTQGTGSGPAPFAGTMGDLVPSNNL 274
Query: 556 SSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVI 443
SS DYGTSNLGIN QCGGG EGN +
Sbjct: 275 SS------------DYGTSNLGINSQCGGGVTTEGNAV 300
Score = 23.1 bits (48), Expect(2) = 6e-35
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 405 VAPVAWSSKLHV 370
+APVAW+ LHV
Sbjct: 310 LAPVAWNDNLHV 321
Score = 77.0 bits (188), Expect(2) = 6e-12
Identities = 42/70 (60%), Positives = 44/70 (62%)
Frame = -3
Query: 658 PELHENAAVTTQGTESGPASFAGTMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQ 479
P LHENAAV TQGT SGPA FA TM + VP NN S D+GTSNLGIN Q
Sbjct: 325 PLLHENAAVMTQGTGSGPAPFADTMGDLVPSNNCGS------------DFGTSNLGINSQ 372
Query: 478 CGGGDMIEGN 449
CGGG EGN
Sbjct: 373 CGGGVTTEGN 382
Score = 20.8 bits (42), Expect(2) = 6e-12
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 405 VAPVAWSSKLHVL 367
VAPVA + LHVL
Sbjct: 394 VAPVACNDNLHVL 406
>ref|XP_006338047.1| PREDICTED: double-stranded RNA-binding protein 1-like isoform X2
[Solanum tuberosum]
Length = 322
Score = 145 bits (366), Expect = 2e-32
Identities = 87/156 (55%), Positives = 96/156 (61%), Gaps = 6/156 (3%)
Frame = -3
Query: 898 ARTALLAVQSCSLGPDDKPNDYSAYTVVPLKKVSDLGISNQESXXXXXXXXXXXXXXXXK 719
ARTALLAVQS P+ YS+YTVVP+KKV+DL ISNQES +
Sbjct: 160 ARTALLAVQSSGFAPN-----YSSYTVVPMKKVTDLAISNQESAAALKPKKNRFKKKQTR 214
Query: 718 NGSDASNRVRTKNTGD------NQVEPELHENAAVTTQGTESGPASFAGTMDNFVPCNNG 557
N SDAS RVRTKNTGD NQ +PE+HENAAV TQGT SGPA FA TM + VP NN
Sbjct: 215 NVSDASYRVRTKNTGDSEVQMVNQAKPEMHENAAVMTQGTGSGPAPFADTMGDLVPSNNC 274
Query: 556 SSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGN 449
S D+GTSNLGIN QCGGG EGN
Sbjct: 275 GS------------DFGTSNLGINSQCGGGVTTEGN 298
>ref|XP_004238005.1| PREDICTED: uncharacterized protein LOC101257657 [Solanum
lycopersicum]
Length = 433
Score = 139 bits (350), Expect(2) = 2e-31
Identities = 84/158 (53%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Frame = -3
Query: 898 ARTALLAVQSCSLGPDDKPNDYSAYTVVPLKKVSDLGISNQESXXXXXXXXXXXXXXXXK 719
ARTALLAVQS P+ YS+YTVVP+KKV+DL ISNQES +
Sbjct: 160 ARTALLAVQSSGFAPN-----YSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQTR 214
Query: 718 NGSDASNRVRTKNTGD------NQVEPELHENAAVTTQGTESGPASFAGTMDNFVPCNNG 557
N SD S VRTK GD NQ +PE+HENAAV T GT SGPA FAGTM + VP NN
Sbjct: 215 NFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNNL 274
Query: 556 SSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVI 443
SS DYGTSN+GIN QCGGG EGN +
Sbjct: 275 SS------------DYGTSNIGINSQCGGGVTTEGNAV 300
Score = 24.3 bits (51), Expect(2) = 2e-31
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 405 VAPVAWSSKLHV 370
VAPVAW+ LHV
Sbjct: 337 VAPVAWNDNLHV 348
Score = 77.0 bits (188), Expect(2) = 6e-12
Identities = 42/68 (61%), Positives = 43/68 (63%)
Frame = -3
Query: 652 LHENAAVTTQGTESGPASFAGTMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQCG 473
LHENAAV TQGT SGPA FAGTM + VP NN S DYGTSNLGIN QCG
Sbjct: 354 LHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGS------------DYGTSNLGINSQCG 401
Query: 472 GGDMIEGN 449
G EGN
Sbjct: 402 EGATTEGN 409
Score = 20.8 bits (42), Expect(2) = 6e-12
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 405 VAPVAWSSKLHVL 367
VAPVA + LHVL
Sbjct: 421 VAPVACNDNLHVL 433
>gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
Length = 318
Score = 139 bits (350), Expect(2) = 2e-31
Identities = 84/158 (53%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Frame = -3
Query: 898 ARTALLAVQSCSLGPDDKPNDYSAYTVVPLKKVSDLGISNQESXXXXXXXXXXXXXXXXK 719
ARTALLAVQS P+ YS+YTVVP+KKV+DL ISNQES +
Sbjct: 45 ARTALLAVQSSGFAPN-----YSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQTR 99
Query: 718 NGSDASNRVRTKNTGD------NQVEPELHENAAVTTQGTESGPASFAGTMDNFVPCNNG 557
N SD S VRTK GD NQ +PE+HENAAV T GT SGPA FAGTM + VP NN
Sbjct: 100 NFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNNL 159
Query: 556 SSDEQKTALMVNQNDYGTSNLGINFQCGGGDMIEGNVI 443
SS DYGTSN+GIN QCGGG EGN +
Sbjct: 160 SS------------DYGTSNIGINSQCGGGVTTEGNAV 185
Score = 24.3 bits (51), Expect(2) = 2e-31
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 405 VAPVAWSSKLHV 370
VAPVAW+ LHV
Sbjct: 222 VAPVAWNDNLHV 233
Score = 77.0 bits (188), Expect(2) = 6e-12
Identities = 42/68 (61%), Positives = 43/68 (63%)
Frame = -3
Query: 652 LHENAAVTTQGTESGPASFAGTMDNFVPCNNGSSDEQKTALMVNQNDYGTSNLGINFQCG 473
LHENAAV TQGT SGPA FAGTM + VP NN S DYGTSNLGIN QCG
Sbjct: 239 LHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGS------------DYGTSNLGINSQCG 286
Query: 472 GGDMIEGN 449
G EGN
Sbjct: 287 EGATTEGN 294
Score = 20.8 bits (42), Expect(2) = 6e-12
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 405 VAPVAWSSKLHVL 367
VAPVA + LHVL
Sbjct: 306 VAPVACNDNLHVL 318