BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00016241
         (704 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578...    92   2e-36
ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777...    73   5e-31
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza...    78   4e-30
gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sat...    78   4e-30
gb|ABB47941.2| retrotransposon protein, putative, unclassified [...    78   4e-30
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    72   9e-29
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...    77   6e-21
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    65   1e-19
gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]               78   1e-18
gb|EMS54188.1| Putative late blight resistance protein-like prot...    64   4e-18
gb|ADB85253.1| putative retrotransposon protein [Phyllostachys e...    69   8e-18
gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]      64   1e-16
gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subc...    62   2e-16
gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subc...    58   2e-16
ref|XP_006582651.1| PREDICTED: uncharacterized mitochondrial pro...    91   3e-16
gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group...    70   4e-16
emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]            43   8e-16
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]          61   8e-16
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    51   2e-15
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...    55   3e-15

>ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578284 [Solanum tuberosum]
          Length = 614

 Score = 91.7 bits (226), Expect(2) = 2e-36
 Identities = 47/81 (58%), Positives = 58/81 (71%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL*HERLGHLGSSILD 182
           GF VKDF+T   +MRCES G+ YPIT    N  + P TF ALAPSL H+RLGH G+ +L+
Sbjct: 469 GFPVKDFQTGRPVMRCESRGKLYPIT----NPRAFPSTFAALAPSLWHDRLGHPGAPVLN 524

Query: 183 SLRKNKFIECNRLRRSIFCSS 245
           SLRKNK IECN+++ S  C S
Sbjct: 525 SLRKNKLIECNQIKDSRICHS 545



 Score = 88.2 bits (217), Expect(2) = 2e-36
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = +1

Query: 247 PLGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSK 426
           PLGK VKLSF +SNSST++PFDIIHSD+WTS VLS  GHRYYVLF+DD+S F   F   K
Sbjct: 547 PLGKHVKLSFYASNSSTIMPFDIIHSDLWTSLVLSSSGHRYYVLFVDDHSKFCGHFLYRK 606


>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
          Length = 2179

 Score = 73.2 bits (178), Expect(3) = 5e-31
 Identities = 31/60 (51%), Positives = 44/60 (73%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           LG+ V+L F  SNS  + PFD+IH D+WTSPV+S  G++YY++ LDD +++ WTF L  K
Sbjct: 609 LGRHVRLPFSVSNSRAIHPFDLIHCDLWTSPVVSVSGYKYYLVILDDCTHYTWTFPLRLK 668



 Score = 54.7 bits (130), Expect(3) = 5e-31
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +3

Query: 465 IRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           +RT F+  IK +QCDN REFD+   R F  T+ + FR SCP T  QNG+
Sbjct: 682 VRTQFDSTIKAVQCDNGREFDHSSARTFFLTHGVVFRMSCPYTSQQNGR 730



 Score = 53.9 bits (128), Expect(3) = 5e-31
 Identities = 29/79 (36%), Positives = 40/79 (50%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL*HERLGHLGSSILD 182
           G SVKD +T  ++ RC S G+ YP     ++  +  LT    + SL H RLGHLG + L 
Sbjct: 527 GLSVKDLQTRSVIARCNSTGDLYPFFPAPSST-TAALTTATSSTSLWHRRLGHLGHAALF 585

Query: 183 SLRKNKFIECNRLRRSIFC 239
            L  +  I CN+      C
Sbjct: 586 QLISSNVISCNKHNTDHVC 604


>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
          Length = 1803

 Score = 78.2 bits (191), Expect(4) = 4e-30
 Identities = 31/68 (45%), Positives = 50/68 (73%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           +G  V+L F SS+S T+ PF ++H+D+WTSP+ S  G++YYV+FLDD+++++WTF +  K
Sbjct: 536 VGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNK 595

Query: 430 *YFSHS*R 453
               H+ R
Sbjct: 596 SEVFHTVR 603



 Score = 44.3 bits (103), Expect(4) = 4e-30
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL--*HERLGHLGSSI 176
           GFS+KD +T+++ +RC+S G+ YP+     +     L+ T+ +PS+   H RLGH GS+ 
Sbjct: 457 GFSIKDLQTQVVKLRCDSPGDLYPLRLPSPH----ALSATS-SPSVEHWHLRLGHPGSAS 511

Query: 177 LDSLRKNKFIECNR 218
           L  +  +   +CN+
Sbjct: 512 LSKVLGSFDFQCNK 525



 Score = 40.8 bits (94), Expect(4) = 4e-30
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHALQ 703
           +AER + TIN+ VRT+L H++ P SFW  ALQ
Sbjct: 657 KAERILRTINDCVRTMLVHSAAPLSFWAEALQ 688



 Score = 35.0 bits (79), Expect(4) = 4e-30
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 444 FLTVR---ALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           F TVR   A   T F   +  +Q DN +E+D+   R   + +    R SCP +  QNGK
Sbjct: 599 FHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGK 657


>gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sativa Japonica Group]
          Length = 1417

 Score = 78.2 bits (191), Expect(4) = 4e-30
 Identities = 31/68 (45%), Positives = 50/68 (73%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           +G  V+L F SS+S T+ PF ++H+D+WTSP+ S  G++YYV+FLDD+++++WTF +  K
Sbjct: 536 VGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNK 595

Query: 430 *YFSHS*R 453
               H+ R
Sbjct: 596 SEVFHTVR 603



 Score = 44.3 bits (103), Expect(4) = 4e-30
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL--*HERLGHLGSSI 176
           GFS+KD +T+++ +RC+S G+ YP+     +     L+ T+ +PS+   H RLGH GS+ 
Sbjct: 457 GFSIKDLQTQVVKLRCDSPGDLYPLRLPSPH----ALSATS-SPSVEHWHLRLGHPGSAS 511

Query: 177 LDSLRKNKFIECNR 218
           L  +  +   +CN+
Sbjct: 512 LSKVLGSFDFQCNK 525



 Score = 40.8 bits (94), Expect(4) = 4e-30
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHALQ 703
           +AER + TIN+ VRT+L H++ P SFW  ALQ
Sbjct: 657 KAERILRTINDYVRTMLVHSAAPLSFWAEALQ 688



 Score = 35.0 bits (79), Expect(4) = 4e-30
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 444 FLTVR---ALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           F TVR   A   T F   +  +Q DN +E+D+   R   + +    R SCP +  QNGK
Sbjct: 599 FHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGK 657


>gb|ABB47941.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1414

 Score = 78.2 bits (191), Expect(4) = 4e-30
 Identities = 31/68 (45%), Positives = 50/68 (73%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           +G  V+L F SS+S T+ PF ++H+D+WTSP+ S  G++YYV+FLDD+++++WTF +  K
Sbjct: 536 VGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNK 595

Query: 430 *YFSHS*R 453
               H+ R
Sbjct: 596 SEVFHTVR 603



 Score = 44.3 bits (103), Expect(4) = 4e-30
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL--*HERLGHLGSSI 176
           GFS+KD +T+++ +RC+S G+ YP+     +     L+ T+ +PS+   H RLGH GS+ 
Sbjct: 457 GFSIKDLQTQVVKLRCDSPGDLYPLRLPSPH----ALSATS-SPSVEHWHLRLGHPGSAS 511

Query: 177 LDSLRKNKFIECNR 218
           L  +  +   +CN+
Sbjct: 512 LSKVLGSFDFQCNK 525



 Score = 40.8 bits (94), Expect(4) = 4e-30
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHALQ 703
           +AER + TIN+ VRT+L H++ P SFW  ALQ
Sbjct: 657 KAERILRTINDYVRTMLVHSAAPLSFWAEALQ 688



 Score = 35.0 bits (79), Expect(4) = 4e-30
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 444 FLTVR---ALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           F TVR   A   T F   +  +Q DN +E+D+   R   + +    R SCP +  QNGK
Sbjct: 599 FHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGK 657


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 72.4 bits (176), Expect(3) = 9e-29
 Identities = 31/60 (51%), Positives = 43/60 (71%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           LGK  +L F +SN+     F+I+HSDIWTSPV S  G +YY++FLD YS+F+W + L +K
Sbjct: 534 LGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPSISGLKYYLIFLDQYSHFVWAYPLHRK 593



 Score = 57.4 bits (137), Expect(3) = 9e-29
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +3

Query: 444 FLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           ++     ++T F R+ K++QCDN+RE+DN  F++   +    FRFSCP T  QNG+
Sbjct: 600 YINFSTYVQTQFNRQFKSLQCDNDREYDNRAFKEHLASTRTVFRFSCPHTSQQNGR 655



 Score = 44.3 bits (103), Expect(3) = 9e-29
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL*HERLGHLGSSILD 182
           GFSVKD +T   L+RC+S G  Y +T +   +    L  T     + H RLGH  S++L 
Sbjct: 451 GFSVKDLKTRNKLLRCDSSGPLYSVTPSSYPSSHHALAATTSDSFIWHRRLGHPSSTLLS 510

Query: 183 SLRKNKFIECNRLRRSIFCSS 245
            L  +  I   +   +  C +
Sbjct: 511 HLLSSLSISVPKTDLTSLCQA 531


>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score = 76.6 bits (187), Expect(2) = 6e-21
 Identities = 33/60 (55%), Positives = 43/60 (71%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           LGK  +L F  S SST  PF+++H D+WTSPVLS  G +YY++ LDD+S+F WTF L  K
Sbjct: 527 LGKHTRLPFSRSQSSTSSPFELVHCDVWTSPVLSTSGFKYYLVVLDDFSHFCWTFPLRHK 586



 Score = 50.8 bits (120), Expect(2) = 6e-21
 Identities = 28/77 (36%), Positives = 42/77 (54%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL*HERLGHLGSSILD 182
           GFSVK  RT  +++RC S G+ Y  T  IA       +F A + +L H RLGH  S+ + 
Sbjct: 447 GFSVKGLRTRRVILRCNSRGDLY--TLPIAAPAIAAHSFLAQSSTLWHRRLGHPSSAAIQ 504

Query: 183 SLRKNKFIECNRLRRSI 233
           +L K   + C ++  S+
Sbjct: 505 TLHKLAILPCTKIDHSL 521


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 64.7 bits (156), Expect(4) = 1e-19
 Identities = 29/60 (48%), Positives = 39/60 (65%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           LGK  +L F  S+  + +P  +IHSD+W SPV S  G  YYVLF+DDYS + W + L +K
Sbjct: 498 LGKAKQLPFPESSRQSSVPLALIHSDVWVSPVQSTGGCSYYVLFIDDYSRYSWLYPLHRK 557



 Score = 45.1 bits (105), Expect(4) = 1e-19
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +3

Query: 441 TFLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGKPKE 620
           TF+  + +    F   IK IQ DN  EF + +F+ F     I  R +CP T  QNG  + 
Sbjct: 563 TFVKFKTIAEKLFSTSIKQIQTDNGGEFTSNQFKQFLTAQGIFHRLTCPHTSQQNGIVER 622

Query: 621 K 623
           K
Sbjct: 623 K 623



 Score = 26.2 bits (56), Expect(4) = 1e-19
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALA----PSL*HERLGHLGS 170
           GF VK+  T  IL++       YP+      + S+    T +         H RLGH  S
Sbjct: 410 GFVVKENLTGRILLQGVVENGLYPLAGCKTFHKSLTCLSTTIGVRANADTWHSRLGHPSS 469

Query: 171 SILDSL-RKNKFIECNRLRRSIFCSS 245
            I +SL   NK        +  FCS+
Sbjct: 470 VIFNSLFHSNKLSVKGSSTKLEFCSA 495



 Score = 26.2 bits (56), Expect(4) = 1e-19
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 614 ERKIHTINNIVRTLLAHASLPPSFW 688
           ERK   I  +  TLLA +SL P +W
Sbjct: 621 ERKHRHIQEMGLTLLAQSSLSPQYW 645


>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
          Length = 826

 Score = 77.8 bits (190), Expect(2) = 1e-18
 Identities = 65/220 (29%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
 Frame = +3

Query: 3    GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFTALAPSL*HERLGHLGSSILD 182
            G SVKD +T  ++ RC S G+ YP      +         A   SL H RLGHLG   L 
Sbjct: 553  GLSVKDLQTRNVIARCNSSGDLYPFFPPATS----ATALLAAPASLWHRRLGHLGREALS 608

Query: 183  SLRKNKFIECN--------------RLRRSIFCSSSTRKTSXXXXXXXXXXXXXXXXXXS 320
             L  +  I CN              R  R  F +S++R T+                   
Sbjct: 609  QLVSSSAISCNKDDDYHLCHACQLGRHTRLPFSTSTSRATNNFDLIHCDLWASPI----- 663

Query: 321  **YLDISCFKLFGPPXXXXXXXXXXXXXXXXXXXXXXXXXTFLTVR---ALIRT*FERKI 491
               + +S +K +                            TF TV    A +RT F   I
Sbjct: 664  ---VSVSGYKYY-------LIILDDRSHYIWTFPLRLKSDTFSTVANFFAHVRTQFGTTI 713

Query: 492  KNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
            K++QCDN REFDN   R F  ++ ++ R SCP T  QNGK
Sbjct: 714  KSVQCDNGREFDNSMSRTFFLSHGVALRMSCPYTSQQNGK 753



 Score = 42.0 bits (97), Expect(2) = 1e-18
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHAL 700
           +AER I T+NNI+R+LL  ASLPP +W  AL
Sbjct: 753 KAERSIRTMNNILRSLLFQASLPPVYWVEAL 783


>gb|EMS54188.1| Putative late blight resistance protein-like protein R1B-14
           [Triticum urartu]
          Length = 770

 Score = 64.3 bits (155), Expect(2) = 4e-18
 Identities = 26/60 (43%), Positives = 42/60 (70%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           +GK V L F +S++ +  PF+++H D+WTSP  S  G +YY++ L+DYS+F+ TF +  K
Sbjct: 596 MGKHVHLPFGTSSTRSSFPFELLHCDLWTSPTPSVFGFKYYLVLLNDYSHFICTFPIRAK 655



 Score = 53.5 bits (127), Expect(2) = 4e-18
 Identities = 27/56 (48%), Positives = 33/56 (58%)
 Frame = +3

Query: 444 FLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           F+  +  + T F   I+ +QCDN REFDN R R F   + I  RFSCP T  QNGK
Sbjct: 662 FVNFQRYVFTHFSLPIRFLQCDNGREFDNSRNRAFFLAHGILLRFSCPYTSPQNGK 717


>gb|ADB85253.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 861

 Score = 68.9 bits (167), Expect(3) = 8e-18
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
 Frame = +1

Query: 169 HLFWTLLEKINLLSVIGCV----GLFFVHHPLGKQVKLSFISSNSSTMLPFDIIHSDIW- 333
           HL  + L  +    V+G V     +F     LGK ++L + SS S +  PFD++HSD+W 
Sbjct: 398 HLCGSCLSSLVRQGVLGRVPVDTSMFCQGCKLGKWLQLPYHSSESLSSRPFDLVHSDVWG 457

Query: 334 TSPVLSYLGHRYYVLFLDDYSNFLWTFSLS 423
            +P++S  GH+ YV+F+DDYS F W F +S
Sbjct: 458 PAPIISKGGHKSYVIFIDDYSRFTWIFPIS 487



 Score = 43.9 bits (102), Expect(3) = 8e-18
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +3

Query: 462 LIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGKPKEKFIPLI 638
           ++RT F+  I+  +CD+  E+ +G FR F +     ++ SCP   AQNG  + K   LI
Sbjct: 502 MVRTQFDSPIRTFRCDSAGEYCSGTFRQFLSEQGTLYQSSCPGARAQNGVVEHKHRHLI 560



 Score = 23.9 bits (50), Expect(3) = 8e-18
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 614 ERKIHTINNIVRTLLAHASLPPSFW 688
           E K   +    RTLL  + +PP FW
Sbjct: 553 EHKHRHLIETARTLLLASHVPPQFW 577


>gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1419

 Score = 63.5 bits (153), Expect(4) = 1e-16
 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIW-TSPVLSYLGHRYYVLFLDDYSNFLWTFSLSK 426
           LGKQV+L + SS S +  PF ++HSD+W  +P  S  GHRYYV+F+DD+S + W + +  
Sbjct: 675 LGKQVQLPYRSSMSRSTSPFALVHSDVWGPAPFHSKGGHRYYVIFVDDFSRYTWIYFMKH 734

Query: 427 K 429
           +
Sbjct: 735 R 735



 Score = 35.0 bits (79), Expect(4) = 1e-16
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 459 ALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGKPKEK 623
           +++ T F   IKN + D+  E+ +  FR   + +    + SCP   AQNG  + K
Sbjct: 747 SMVHTQFSTSIKNFRSDSGGEYLSNAFRQLLSDHGTLPQLSCPGAHAQNGVAERK 801



 Score = 28.9 bits (63), Expect(4) = 1e-16
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 611 AERKIHTINNIVRTLLAHASLPPSFWHHAL 700
           AERK   I    RTLL  + +PP FW  A+
Sbjct: 798 AERKHRHIIETARTLLIASHVPPHFWAEAV 827



 Score = 24.6 bits (52), Expect(4) = 1e-16
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  TTIANN*SIPLTFTALAPSL*HERLGHLGSSILDSL 188
           T+I +N S+  + +A  P   H RLGHL  S L +L
Sbjct: 619 TSITSNSSVYSSLSASFPQW-HHRLGHLCGSRLSTL 653


>gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
           [Oryza sativa Japonica Group]
          Length = 976

 Score = 62.4 bits (150), Expect(3) = 2e-16
 Identities = 31/57 (54%), Positives = 35/57 (61%)
 Frame = +3

Query: 441 TFLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           T L   A I+T F   I++IQCDN REFDN   RDF   N +S R SCP T  QNGK
Sbjct: 290 TLLRFFAYIKTHFSTTIRSIQCDNGREFDNSAARDFFLRNGVSIRMSCPHTSPQNGK 346



 Score = 41.2 bits (95), Expect(3) = 2e-16
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHAL 700
           +AER + ++NNIVR+LL  ASLP SFW  AL
Sbjct: 346 KAERTLRSLNNIVRSLLFQASLPASFWVEAL 376



 Score = 28.5 bits (62), Expect(3) = 2e-16
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 370 YVLFLDDYSNFLWTFSLSKK 429
           Y++ LDD S+F+WTF L  K
Sbjct: 265 YLVILDDCSHFVWTFPLRLK 284


>gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1597

 Score = 58.2 bits (139), Expect(3) = 2e-16
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
 Frame = +3

Query: 441 TFLTVR---ALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           TF T+    A ++T F   I++IQCDN REFDN   R F  TN ++ R SCP T  QNGK
Sbjct: 713 TFTTLSHFFAYVKTQFSTNIRSIQCDNGREFDNISARTFFLTNGVTMRMSCPHTSPQNGK 772



 Score = 38.5 bits (88), Expect(3) = 2e-16
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHAL 700
           +AER + +INNI+R+LL  ASLP +FW  AL
Sbjct: 772 KAERILRSINNIMRSLLFQASLPGTFWVEAL 802



 Score = 35.0 bits (79), Expect(3) = 2e-16
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +1

Query: 334 TSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           + P++S  G++YY++ LDD S+F+WTF L  K
Sbjct: 681 SGPLVS--GYKYYLVILDDCSHFVWTFPLRFK 710


>ref|XP_006582651.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
           [Glycine max]
          Length = 317

 Score = 91.3 bits (225), Expect = 3e-16
 Identities = 51/72 (70%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPIT--TTIANN*SIPLTFTALAPSL*HERLGHLGSSI 176
           GFSVK+F+T M LMRCESWG  YPIT  TT A + S   TF +LAPSL HERLGH G SI
Sbjct: 9   GFSVKNFQTGMPLMRCESWGMLYPITESTTPATSSS---TFASLAPSLWHERLGHPGVSI 65

Query: 177 LDSLRKNKFIEC 212
           L SLRKNKFIEC
Sbjct: 66  LHSLRKNKFIEC 77


>gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709048|gb|ABF96843.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 594

 Score = 69.7 bits (169), Expect(2) = 4e-16
 Identities = 28/60 (46%), Positives = 43/60 (71%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           LGK  +L F  S SST  PF+++H D+WTS V+S  G ++Y++ +DD+++F WTF L +K
Sbjct: 519 LGKHTRLPFNKSTSSTSSPFELVHCDVWTSLVMSISGFKFYLVLVDDFTHFCWTFPLCQK 578



 Score = 41.6 bits (96), Expect(2) = 4e-16
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPLTFT-ALAPSL*HERLGHLGSSIL 179
           GFS+KD +T  +++RC S GE Y +        SI   +  A + +L H RLGH G + +
Sbjct: 439 GFSIKDPQTRRVILRCNSHGELYTLPAAAP---SIAAHYNLATSSTLWHRRLGHPGPTAV 495

Query: 180 DSLRKNKFIECNRLRRSI 233
            +L+    I  ++   S+
Sbjct: 496 TTLQHLSAIPRSKTNNSL 513


>emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]
          Length = 1455

 Score = 42.7 bits (99), Expect(4) = 8e-16
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +2

Query: 608 EAERKIHTINNIVRTLLAHASLPPSFWHHAL 700
           +AER I T+NN +RTLL  AS+PPS+W   L
Sbjct: 688 KAERMIRTLNNSIRTLLLQASMPPSYWAEGL 718



 Score = 39.3 bits (90), Expect(4) = 8e-16
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +3

Query: 3   GFSVKDFRTEMILMRCESWGEFYPI---TTTIANN*SIPLTFTALAPSL*HERLGHLGSS 173
           GFS KD +T  +++RC S GE Y +     +IA + ++     A + +L H RLGH G +
Sbjct: 520 GFSFKDPQTRRVILRCNSHGELYTLPAAAPSIAAHCNL-----ATSSTLWHRRLGHPGPT 574

Query: 174 ILDSLRKNKFIECNRLRRSI 233
            + +L+    I  ++   S+
Sbjct: 575 AVTTLQHLSAIPRSKTNNSL 594



 Score = 35.0 bits (79), Expect(4) = 8e-16
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +3

Query: 471 T*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGK 611
           T F  ++K +Q DN  EF N     F        R SCP T  QNGK
Sbjct: 642 TQFGHRLKCLQADNGTEFVNHNTTSFLAGRGSLLRLSCPYTSPQNGK 688



 Score = 32.0 bits (71), Expect(4) = 8e-16
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLD 387
           LGK  +L F  S SST  PF+++H D   S V     HR+ V F++
Sbjct: 600 LGKHTRLPFNKSTSSTSSPFELVHCD--KSDV-----HRHIVEFVE 638


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 60.8 bits (146), Expect(3) = 8e-16
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIW-TSPVLSYLGHRYYVLFLDDYSNFLWTFSLSK 426
           +GK  +L F SS+   + P D +H D+W  SPV+S  G +YY +F+DD+S F W F L  
Sbjct: 495 MGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRM 554

Query: 427 K 429
           K
Sbjct: 555 K 555



 Score = 38.1 bits (87), Expect(3) = 8e-16
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 444 FLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGKPKEK 623
           F+  + L+      KIK  Q D   EF + + ++    + I  R SCP T  QNG  + K
Sbjct: 562 FIAYQKLVENQLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERK 621

Query: 624 FIPLIIL 644
              L+ L
Sbjct: 622 HRHLVEL 628



 Score = 30.8 bits (68), Expect(3) = 8e-16
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 144 HERLGHLGSSILDSLRKNKFIECNRLRRSIFC 239
           H RLGH  S IL  L   K I+ N+ R S  C
Sbjct: 459 HHRLGHSNSKILQQLLTRKEIQVNKSRTSPVC 490


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score = 51.2 bits (121), Expect(4) = 2e-15
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +1

Query: 253 GKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           GK  +L +  S+S +  P ++I+SD+W   + S  G +YYV F+ DYS F W + +  K
Sbjct: 497 GKSHQLPYSRSSSMSSHPLELIYSDVWGPALTSVGGKQYYVSFIGDYSKFTWLYLIKHK 555



 Score = 33.5 bits (75), Expect(4) = 2e-15
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 6   FSVKDFRTEMILMRCESWGEFYPITTTIANN*SIPL--TFTALAPSL*--HERLGHLGSS 173
           F++KD  T+ +L R    G  Y + ++  +    PL   F A+ PS    H RLGH  S 
Sbjct: 409 FNLKDLATKKLLFRGPCRGRLYALPSSSPHERPRPLKEAFGAIKPSFERWHSRLGHPASP 468

Query: 174 ILDSLRKNKFIEC 212
           I++ +     + C
Sbjct: 469 IVEKVISKNNLPC 481



 Score = 32.3 bits (72), Expect(4) = 2e-15
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 444 FLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGKPKEK 623
           F   +AL+   F RKI  +Q D   E++  +   F     I+   SCP T  QNG  + K
Sbjct: 562 FHEFQALVERLFNRKIIAMQSDWGGEYE--KLHSFFTKIGITHHVSCPHTHQQNGSAERK 619



 Score = 30.8 bits (68), Expect(4) = 2e-15
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 611 AERKIHTINNIVRTLLAHASLPPSFWHHALQ 703
           AERK   I  +  TLLA++S+P  FW  A Q
Sbjct: 616 AERKHRHIVEVGLTLLAYSSMPLKFWDEAFQ 646


>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
           gi|225898008|dbj|BAH30336.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 1459

 Score = 55.1 bits (131), Expect(4) = 3e-15
 Identities = 20/60 (33%), Positives = 39/60 (65%)
 Frame = +1

Query: 250 LGKQVKLSFISSNSSTMLPFDIIHSDIWTSPVLSYLGHRYYVLFLDDYSNFLWTFSLSKK 429
           + K  KL F +S+  +  P + I +D+WTSP++S+  ++YY++ +D Y+ + W + L +K
Sbjct: 511 INKSHKLPFATSSIHSSSPLEYIFTDVWTSPIISHDNYKYYLVLVDHYTRYTWLYPLQQK 570



 Score = 37.7 bits (86), Expect(4) = 3e-15
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = +3

Query: 441 TFLTVRALIRT*FERKIKNIQCDNEREFDNGRFRDFCNTNDISFRFSCPRTFAQNGKPKE 620
           TF+  +AL+   F+ KI+ +  DN  EF     RDF  +N IS   S P T   NG  + 
Sbjct: 576 TFIAFKALVENRFQAKIRTLYSDNGGEFI--ALRDFLVSNGISHLTSPPHTPEHNGLSER 633

Query: 621 K 623
           K
Sbjct: 634 K 634



 Score = 30.0 bits (66), Expect(4) = 3e-15
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = +3

Query: 6   FSVKDFRTEMILMRCESWGEFY--PITTTIANN*SIPLTFTALAP----SL*HERLGHLG 167
           F VKD  T  +L++  +  + Y  P+T   A        FT+ +P    S  H RLGH  
Sbjct: 427 FQVKDLNTGTLLLQGRTKDDLYEWPVTNPPAT-----ALFTSPSPKTTLSSWHSRLGHPS 481

Query: 168 SSILDSL 188
           +SIL++L
Sbjct: 482 ASILNTL 488



 Score = 24.3 bits (51), Expect(4) = 3e-15
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 611 AERKIHTINNIVRTLLAHASLPPSFWHHA 697
           +ERK   I     TLL  AS+P  +W +A
Sbjct: 631 SERKHRHIVETGLTLLTQASVPREYWTYA 659