BLASTX nr result
ID: Atropa21_contig00016111
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00016111
(1374 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002312197.1| hypothetical protein POPTR_0008s07580g [Popu... 128 1e-84
gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata] 236 3e-72
ref|XP_004250504.1| PREDICTED: endoribonuclease Dicer homolog 2-... 199 1e-66
gb|EXB88160.1| Endoribonuclease Dicer-2-like protein [Morus nota... 135 1e-63
gb|EMS67761.1| Endoribonuclease Dicer-like protein 2a [Triticum ... 87 5e-61
ref|XP_006480490.1| PREDICTED: endoribonuclease Dicer homolog 2-... 153 1e-60
ref|XP_006480488.1| PREDICTED: endoribonuclease Dicer homolog 2-... 153 1e-60
ref|XP_006428678.1| hypothetical protein CICLE_v10010911mg [Citr... 152 4e-60
ref|XP_006480493.1| PREDICTED: endoribonuclease Dicer homolog 2-... 145 2e-55
ref|XP_006428679.1| hypothetical protein CICLE_v10010912mg [Citr... 145 2e-55
gb|ACE60552.1| dicer-like protein 2 [Brassica rapa] 144 2e-52
ref|XP_004250068.1| PREDICTED: endoribonuclease Dicer homolog 2-... 193 4e-52
gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana] 139 7e-51
gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana] 139 7e-51
gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana] 137 2e-50
ref|NP_566199.4| endoribonuclease Dicer-like 2 [Arabidopsis thal... 137 2e-50
ref|NP_001078101.1| endoribonuclease Dicer-like 2 [Arabidopsis t... 137 2e-50
ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arab... 134 2e-46
ref|XP_002315119.1| hypothetical protein POPTR_0010s18870g [Popu... 152 6e-41
ref|XP_003559709.1| PREDICTED: endoribonuclease Dicer homolog 2a... 102 6e-41
>ref|XP_002312197.1| hypothetical protein POPTR_0008s07580g [Populus trichocarpa]
gi|222852017|gb|EEE89564.1| hypothetical protein
POPTR_0008s07580g [Populus trichocarpa]
Length = 1468
Score = 128 bits (321), Expect(5) = 1e-84
Identities = 64/113 (56%), Positives = 77/113 (68%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
NHHEGLLS KK+KIISNA LC+ G K+ GFI NE D K W+IPG EE L
Sbjct: 1086 NHHEGLLSFKKDKIISNAALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGSDFLSEEPL 1145
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLV 339
KIY RG+ K+K K +ADVVEALI AYLS+GGE+ AL FM W+G+ +D +
Sbjct: 1146 SKGRKIYIRGRRKVKSKTIADVVEALIGAYLSTGGEVTALLFMDWIGIKVDFM 1198
Score = 94.4 bits (233), Expect(5) = 1e-84
Identities = 45/64 (70%), Positives = 50/64 (78%)
Frame = +3
Query: 333 FGYAPLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVEALTHGSYMLPEIPRCYQMITW 512
F P RH + AEK VNVRYLES+L+Y FNDPSLLVEALTHGSYMLPEIPRCYQ + +
Sbjct: 1197 FMNTPYERHIQLQAEKFVNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEF 1256
Query: 513 LCSA 524
L A
Sbjct: 1257 LGDA 1260
Score = 90.1 bits (222), Expect(5) = 1e-84
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ET FPKVLGDV+E LAGAI VDSG+NK+ F+SIRPLLEPLITP+T++LQPVR
Sbjct: 1338 ESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVR 1392
Score = 48.5 bits (114), Expect(5) = 1e-84
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLKECAF 1111
A +T+EVEA+G+I K T + DK AKK+ASK VLK+LKE F
Sbjct: 1417 ASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKALKESNF 1459
Score = 43.9 bits (102), Expect(5) = 1e-84
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +1
Query: 637 CYAQSAVKAGLHKRILHASQDLQRQILDTVEHFENLDLVS 756
CYA SAVK GL + ILHAS DL + I+ TV+ + L S
Sbjct: 1294 CYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333
Score = 69.3 bits (168), Expect = 4e-09
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +2
Query: 485 STMLSDDHLAMQRLEFLGDAVLDYVVTAHLHFKYPGPTPGLITDLRSASVN 637
S ML + QRLEFLGDAVLDY++T H++ +YPG +PGL+TDLRSASVN
Sbjct: 1241 SYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKEYPGMSPGLLTDLRSASVN 1291
>gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
Length = 1403
Score = 236 bits (603), Expect(2) = 3e-72
Identities = 165/349 (47%), Positives = 202/349 (57%), Gaps = 20/349 (5%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLL+VKKNKIISNA LCKLG ARKIPGFI +EP DLK WLIPGD+SQV FDEE LM
Sbjct: 1029 HHEGLLTVKKNKIISNAALCKLGCARKIPGFIRSEPFDLKGWLIPGDNSQVQNFDEELLM 1088
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
PSVK+YSRG+ KIK KRVADVVEALI A+LSSGGE+AALSFMKWLG+DID V +
Sbjct: 1089 PSVKMYSRGRQKIKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGVDIDFV----DAPT 1144
Query: 364 P*MLRRLSMSDTWNPCYITGSMILLCLLKH*LTDPTCYLRFHDAIR*SPGYAALGISWRC 543
P R M N + L LL + DP+ + +A+ + G L RC
Sbjct: 1145 P---RHFPM----NAEKLVNVRYLESLLDYKFHDPSLLV---EAL--THGSYMLPEIPRC 1192
Query: 544 SARLCCYSTSPFQISRTNSRTYY*F---------EVRLC----KCYAQSAVKAGLHKRIL 684
RL + + T + Y+ + ++R +CYAQ+AVKAGLHK IL
Sbjct: 1193 YQRLEFLGDAVLDYAVT-AHLYFKYPGLSPGFITDLRSASVNNECYAQAAVKAGLHKHIL 1251
Query: 685 HASQDLQRQILDTVEHFENLDLVSRL----KLLFQRCXXXXXXXXXXXXXXXXXXTKILH 852
HASQDLQRQI++TV +FE LD S + F + K +
Sbjct: 1252 HASQDLQRQIVNTVLNFEKLDPASTFGWESETTFPKVLGDVIESLAGAIFVDSGFNKDVV 1311
Query: 853 FRAYDLFWNR*LHLRQ*SFNQ-*ELSELCDQKGYI--KDIVSRENGGIY 990
F++ + + ELSELCDQKGYI K++VSRENG Y
Sbjct: 1312 FQSVRTLLEPLITPDTVKLHPVRELSELCDQKGYIKKKNVVSRENGVAY 1360
Score = 64.3 bits (155), Expect(2) = 3e-72
Identities = 35/46 (76%), Positives = 37/46 (80%)
Frame = +2
Query: 980 VAYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLKECAFNA 1117
VAYITVEVEADGV HK TCS DK MA+KVA KNVLK LKE A +A
Sbjct: 1358 VAYITVEVEADGVSHKFTCSERDKKMAEKVACKNVLKLLKEFASDA 1403
>ref|XP_004250504.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Solanum
lycopersicum]
Length = 1402
Score = 180 bits (456), Expect(3) = 1e-66
Identities = 106/210 (50%), Positives = 128/210 (60%), Gaps = 7/210 (3%)
Frame = +3
Query: 312 MAWAGH*--FGYAPLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVEALTHGSYMLPEI 485
M W G F AP+ RHFP+NAEK+VNV+YLES+LHY+F+DPSLLVEALTHGSYMLPEI
Sbjct: 1131 MKWLGMDIDFADAPIQRHFPLNAEKLVNVKYLESLLHYKFHDPSLLVEALTHGSYMLPEI 1190
Query: 486 PRCYQMITWLCSAWNFLEMQC*IMLLQHISISNXXXXXXXXXXXXGPPL*MLCSICSQGW 665
PRCYQ + +L A L+ ++ H+ + C
Sbjct: 1191 PRCYQRLEFLGDA--VLDY----VVTAHLYFKYPGLSPGLITDLRSASVNNEC-YAQCAI 1243
Query: 666 SAQAHSSCLARSTKADIRYC*AFREFGSCV-----QAETTFPKVLGDVVEFLAGAIFVDS 830
A H L S + C +F + V +AETTFPKVL DV+E LAGAIFVDS
Sbjct: 1244 KASLHKHILHASPDLQRQICNTIEDFKNPVSTFGWEAETTFPKVLADVIESLAGAIFVDS 1303
Query: 831 GFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
GFN+DTTFQ IRPLLEPL+TPQT+K PVR
Sbjct: 1304 GFNQDTTFQCIRPLLEPLVTPQTLKPHPVR 1333
Score = 81.3 bits (199), Expect(3) = 1e-66
Identities = 38/46 (82%), Positives = 43/46 (93%)
Frame = +2
Query: 980 VAYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLKECAFNA 1117
VAYITVE++ADGV HKSTCSG DK+MAKKVA KNVLKSLKEC++NA
Sbjct: 1357 VAYITVEIDADGVTHKSTCSGRDKIMAKKVACKNVLKSLKECSYNA 1402
Score = 42.0 bits (97), Expect(3) = 1e-66
Identities = 20/26 (76%), Positives = 22/26 (84%), Gaps = 2/26 (7%)
Frame = +1
Query: 919 ELSELCDQKGYI--KDIVSRENGGIY 990
ELSELCDQKGY+ KD+VSRENG Y
Sbjct: 1334 ELSELCDQKGYVKKKDVVSRENGVAY 1359
Score = 199 bits (505), Expect = 3e-48
Identities = 128/259 (49%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
NHHEGLL VKK+KIISNA LCKLG ARKIPGFI NE L+ W+IPGDSSQVH F+EE +
Sbjct: 1029 NHHEGLLCVKKSKIISNAALCKLGCARKIPGFIRNEAFTLQAWIIPGDSSQVHSFNEELM 1088
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
S K+YSR K KI+ KRVADVVEALI AYLSSGGE+AALS MKWLG+DID Q
Sbjct: 1089 TSSDKMYSRIKQKIRSKRVADVVEALIGAYLSSGGEVAALSLMKWLGMDIDFADAPIQRH 1148
Query: 361 SP*MLRRLSMSDTWNPCYITGSM--------ILLCLLKH*L----TDPTCYLRFHDAIR* 504
P L+ N Y+ + +L+ L H P CY R
Sbjct: 1149 FP-----LNAEKLVNVKYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFL--- 1200
Query: 505 SPGYAALGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRIL 684
G A L SP I+ S + +CYAQ A+KA LHK IL
Sbjct: 1201 --GDAVLDYVVTAHLYFKYPGLSPGLITDLRSASVN------NECYAQCAIKASLHKHIL 1252
Query: 685 HASQDLQRQILDTVEHFEN 741
HAS DLQRQI +T+E F+N
Sbjct: 1253 HASPDLQRQICNTIEDFKN 1271
>gb|EXB88160.1| Endoribonuclease Dicer-2-like protein [Morus notabilis]
Length = 1429
Score = 135 bits (341), Expect(3) = 1e-63
Identities = 68/112 (60%), Positives = 83/112 (74%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
N+HEGLLSVKK+KIISNA LCK G RK+PGFI +E D K W+IPGDSS E+ L
Sbjct: 1022 NNHEGLLSVKKDKIISNAALCKFGCERKLPGFIRDEYFDPKNWIIPGDSSTNKALLEDVL 1081
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDL 336
IY +G K+K KRVADVVEALI A+LS+GGE+ A+ FM WLG+++DL
Sbjct: 1082 PNEKIIYIKGTKKMKSKRVADVVEALIGAFLSTGGEIPAVKFMNWLGIEVDL 1133
Score = 115 bits (289), Expect(3) = 1e-63
Identities = 85/247 (34%), Positives = 120/247 (48%), Gaps = 53/247 (21%)
Frame = +3
Query: 339 YAPLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVEALTHGSYMLPEI----------- 485
+ P HF + +++++N+++LE +L+Y F D SLLVEALTHGSYMLPEI
Sbjct: 1135 FKPYETHFQVQSDRLLNIKHLEFLLNYTFRDRSLLVEALTHGSYMLPEIPRCYQFLLNYT 1194
Query: 486 ---------------------PRCYQMITWLCSAWNFLEMQC*IMLLQHISISNXXXXXX 602
PRCYQ + +L A +L ++ +
Sbjct: 1195 FRDHSLLVEALTHGSYMLPEIPRCYQRLEFLGDA-----------VLDYVITMHFYNTYP 1243
Query: 603 XXXXXXGPPL*MLCSICSQGWSAQAHSSCLARS-TKADIRYC*AF------REFGSCV-- 755
M + SA ++ C A S KA ++ + +E + +
Sbjct: 1244 G----------MSPEKLTDMRSASVNNDCYALSAVKAGLQKHILYTSHQLHKEIANTIIN 1293
Query: 756 ----QAETTF--------PKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQT 899
+E+TF PKVLGDV+E LAGAIFVDSG++K+ FQSIRPLLEPLITP+T
Sbjct: 1294 FEKLSSESTFGWESETSFPKVLGDVIESLAGAIFVDSGYDKELVFQSIRPLLEPLITPET 1353
Query: 900 VKLQPVR 920
VKL P +
Sbjct: 1354 VKLHPAK 1360
Score = 41.2 bits (95), Expect(3) = 1e-63
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 980 VAYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
V+ IT+EVEA+GV ++ T + DK + KKVA K VL++LK
Sbjct: 1384 VSSITIEVEANGVTYRHTSNVSDKKIGKKVACKEVLEALK 1423
>gb|EMS67761.1| Endoribonuclease Dicer-like protein 2a [Triticum urartu]
Length = 537
Score = 87.4 bits (215), Expect(6) = 5e-61
Identities = 45/114 (39%), Positives = 69/114 (60%)
Frame = +1
Query: 7 HEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLMP 186
HEG L+ K +ISNA LC+L + + G+I E + K W+IPG + + +
Sbjct: 166 HEGTLTKMKKNLISNAALCQLACSNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKISFLS 225
Query: 187 SVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHL 348
S +++ K+ ++ KR+AD VEALI AYL + GE AA F+K LGLDI+ +++
Sbjct: 226 SNDMHTLRKMSVRSKRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIEFHSNI 279
Score = 64.3 bits (155), Expect(6) = 5e-61
Identities = 29/56 (51%), Positives = 44/56 (78%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVRV 923
+A PKVLGDV+E LAGAI++DS ++K+ ++S++ LLEPL TP+TV+ PV++
Sbjct: 417 EAGIGLPKVLGDVIESLAGAIYLDSKYDKEVVWKSMKQLLEPLATPETVERDPVKL 472
Score = 62.8 bits (151), Expect(6) = 5e-61
Identities = 31/60 (51%), Positives = 37/60 (61%)
Frame = +3
Query: 345 PLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVEALTHGSYMLPEIPRCYQMITWLCSA 524
PL R + +EK +NVR LE +L Y F D SLLVEALTHGSY CYQ + +L A
Sbjct: 280 PLERKIVLKSEKFINVRSLEMILGYEFKDTSLLVEALTHGSYQTAGATACYQRLEFLGDA 339
Score = 58.2 bits (139), Expect(6) = 5e-61
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +2
Query: 518 QRLEFLGDAVLDYVVTAHLHFKYPGPTPGLITDLRSASVN 637
QRLEFLGDAVLDY+ T + + +YP TP L+TDLRSASVN
Sbjct: 331 QRLEFLGDAVLDYLFTIYFYNQYPECTPELLTDLRSASVN 370
Score = 37.7 bits (86), Expect(6) = 5e-61
Identities = 16/40 (40%), Positives = 30/40 (75%)
Frame = +2
Query: 980 VAYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
V+ + EV+ +G + +T +G DK++AKK+A+K++L +LK
Sbjct: 494 VSSVVAEVQVEGTTYTATETGPDKIVAKKLAAKSLLNNLK 533
Score = 35.0 bits (79), Expect(6) = 5e-61
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 637 CYAQSAVKAGLHKRILHASQDLQRQILDTVEHFE 738
CYA +A KAGL+K ILH+S L ++ E+F+
Sbjct: 373 CYAHAAAKAGLNKHILHSSLQLHGRMAYYFENFK 406
>ref|XP_006480490.1| PREDICTED: endoribonuclease Dicer homolog 2-like isoform X3 [Citrus
sinensis] gi|568853715|ref|XP_006480491.1| PREDICTED:
endoribonuclease Dicer homolog 2-like isoform X4 [Citrus
sinensis] gi|568853717|ref|XP_006480492.1| PREDICTED:
endoribonuclease Dicer homolog 2-like isoform X5 [Citrus
sinensis]
Length = 1401
Score = 153 bits (387), Expect(3) = 1e-60
Identities = 105/259 (40%), Positives = 139/259 (53%), Gaps = 7/259 (2%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
NHHEGLLSVKK++IISNA LCKLG K+PGFI EP D K W+IPGD+S ++ ++ L
Sbjct: 1021 NHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSL 1080
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
KIY G+ K+K K VADVVEALI A+LS+GGE L F+ +G+ +D V +
Sbjct: 1081 FNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQ 1140
Query: 361 SP*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYA 519
+ RL + N + S+++ L + L + P CY R G A
Sbjct: 1141 FQVQVERLVNVRHLESLLNYSFCDPSLLVEALTHGSYMLPEIPRCYQRLEFL-----GDA 1195
Query: 520 ALGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQD 699
L + SP ++ S + CYA S+VK GLHK ILHASQ+
Sbjct: 1196 VLDYLITVYLYNKYPTLSPGDLTDMRSASVN------NDCYALSSVKHGLHKHILHASQE 1249
Query: 700 LQRQILDTVEHFENLDLVS 756
L + I TV+ FE L L S
Sbjct: 1250 LYKWINITVDSFERLSLES 1268
Score = 85.5 bits (210), Expect(3) = 1e-60
Identities = 37/55 (67%), Positives = 49/55 (89%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ET+FPK LGD++E L+GAIFVDSG NK+ F+SIRPLLEP+ITP+T++LQP R
Sbjct: 1273 ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPAR 1327
Score = 43.9 bits (102), Expect(3) = 1e-60
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
A +TVEV A+G + K T + DK AKKVASK VLKSLK
Sbjct: 1352 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 1390
>ref|XP_006480488.1| PREDICTED: endoribonuclease Dicer homolog 2-like isoform X1 [Citrus
sinensis] gi|568853711|ref|XP_006480489.1| PREDICTED:
endoribonuclease Dicer homolog 2-like isoform X2 [Citrus
sinensis]
Length = 1401
Score = 153 bits (387), Expect(3) = 1e-60
Identities = 105/259 (40%), Positives = 139/259 (53%), Gaps = 7/259 (2%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
NHHEGLLSVKK++IISNA LCKLG K+PGFI EP D K W+IPGD+S ++ ++ L
Sbjct: 1021 NHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSL 1080
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
KIY G+ K+K K VADVVEALI A+LS+GGE L F+ +G+ +D V +
Sbjct: 1081 FNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQ 1140
Query: 361 SP*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYA 519
+ RL + N + S+++ L + L + P CY R G A
Sbjct: 1141 FQVQVERLVNVRHLESLLNYSFCDPSLLVEALTHGSYMLPEIPRCYQRLEFL-----GDA 1195
Query: 520 ALGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQD 699
L + SP ++ S + CYA S+VK GLHK ILHASQ+
Sbjct: 1196 VLDYLITVYLYNKYPTLSPGDLTDMRSASVN------NDCYALSSVKHGLHKHILHASQE 1249
Query: 700 LQRQILDTVEHFENLDLVS 756
L + I TV+ FE L L S
Sbjct: 1250 LYKWINITVDSFERLSLES 1268
Score = 85.5 bits (210), Expect(3) = 1e-60
Identities = 37/55 (67%), Positives = 49/55 (89%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ET+FPK LGD++E L+GAIFVDSG NK+ F+SIRPLLEP+ITP+T++LQP R
Sbjct: 1273 ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPAR 1327
Score = 43.9 bits (102), Expect(3) = 1e-60
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
A +TVEV A+G + K T + DK AKKVASK VLKSLK
Sbjct: 1352 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 1390
>ref|XP_006428678.1| hypothetical protein CICLE_v10010911mg [Citrus clementina]
gi|557530735|gb|ESR41918.1| hypothetical protein
CICLE_v10010911mg [Citrus clementina]
Length = 1401
Score = 152 bits (383), Expect(3) = 4e-60
Identities = 105/259 (40%), Positives = 139/259 (53%), Gaps = 7/259 (2%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
NHHEGLLSVKK++IISNA LCKLG K+PGFI EP D K W+IPGD+S ++ ++ L
Sbjct: 1021 NHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSL 1080
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
KIY G+ K+K K VADVVEALI A+LS+GGE L F+ +G+ +D V +
Sbjct: 1081 FNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQ 1140
Query: 361 SP*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYA 519
+ RL + N + S+++ L + L + P CY R G A
Sbjct: 1141 FQVQVERLVNVRHLELLLNYSFCDPSLLVEALTHGSYMLPEIPRCYQRLEFL-----GDA 1195
Query: 520 ALGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQD 699
L + SP ++ S + CYA S+VK GLHK ILHASQ+
Sbjct: 1196 VLDYLITVYLYNKYPTLSPGDLTDMRSASVN------NDCYALSSVKHGLHKHILHASQE 1249
Query: 700 LQRQILDTVEHFENLDLVS 756
L + I TV+ FE L L S
Sbjct: 1250 LYKWINITVDSFERLSLES 1268
Score = 85.5 bits (210), Expect(3) = 4e-60
Identities = 37/55 (67%), Positives = 49/55 (89%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ET+FPK LGD++E L+GAIFVDSG NK+ F+SIRPLLEP+ITP+T++LQP R
Sbjct: 1273 ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPAR 1327
Score = 43.9 bits (102), Expect(3) = 4e-60
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
A +TVEV A+G + K T + DK AKKVASK VLKSLK
Sbjct: 1352 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 1390
>ref|XP_006480493.1| PREDICTED: endoribonuclease Dicer homolog 2-like isoform X6 [Citrus
sinensis]
Length = 1396
Score = 145 bits (367), Expect(3) = 2e-55
Identities = 103/259 (39%), Positives = 137/259 (52%), Gaps = 7/259 (2%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
N+HEGLLSVKK +IISNA LCKLG +K+PGFI E D K W+IPGD+S ++ +++ L
Sbjct: 1021 NNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSL 1080
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
KIY G+ K+K K VADVVEALI A+LS+GGE L F+ +G+ +D V Q
Sbjct: 1081 FNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQ 1140
Query: 361 SP*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYA 519
RL + N + S+++ L + L + P CY R G A
Sbjct: 1141 FQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFL-----GDA 1195
Query: 520 ALGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQD 699
L SP ++ S + CYA S+VK GLHK ILHAS +
Sbjct: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVN------NDCYALSSVKHGLHKHILHASHE 1249
Query: 700 LQRQILDTVEHFENLDLVS 756
L ++I TV+ FE L L S
Sbjct: 1250 LYKRINITVDSFEKLSLGS 1268
Score = 82.0 bits (201), Expect(3) = 2e-55
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ T+FPK LGD++E LAGAIFVDSG N++ FQSIRPLLEP+ITP+T++ PVR
Sbjct: 1273 ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVR 1327
Score = 38.1 bits (87), Expect(3) = 2e-55
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
A +TVEV+A+G + + T DK AKKVA K VLKSL+
Sbjct: 1352 AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
>ref|XP_006428679.1| hypothetical protein CICLE_v10010912mg [Citrus clementina]
gi|557530736|gb|ESR41919.1| hypothetical protein
CICLE_v10010912mg [Citrus clementina]
Length = 1396
Score = 145 bits (367), Expect(3) = 2e-55
Identities = 103/259 (39%), Positives = 137/259 (52%), Gaps = 7/259 (2%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
N+HEGLLSVKK +IISNA LCKLG +K+PGFI E D K W+IPGD+S ++ +++ L
Sbjct: 1021 NNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSL 1080
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
KIY G+ K+K K VADVVEALI A+LS+GGE L F+ +G+ +D V Q
Sbjct: 1081 FNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQ 1140
Query: 361 SP*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYA 519
RL + N + S+++ L + L + P CY R G A
Sbjct: 1141 FQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFL-----GDA 1195
Query: 520 ALGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQD 699
L SP ++ S + CYA S+VK GLHK ILHAS +
Sbjct: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVN------NDCYALSSVKHGLHKHILHASHE 1249
Query: 700 LQRQILDTVEHFENLDLVS 756
L ++I TV+ FE L L S
Sbjct: 1250 LYKRINITVDSFEKLSLGS 1268
Score = 82.0 bits (201), Expect(3) = 2e-55
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ T+FPK LGD++E LAGAIFVDSG N++ FQSIRPLLEP+ITP+T++ PVR
Sbjct: 1273 ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVR 1327
Score = 38.1 bits (87), Expect(3) = 2e-55
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
A +TVEV+A+G + + T DK AKKVA K VLKSL+
Sbjct: 1352 AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
>gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
Length = 1392
Score = 144 bits (363), Expect(3) = 2e-52
Identities = 95/257 (36%), Positives = 132/257 (51%), Gaps = 7/257 (2%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS K+++ISN TLCK G +K+ GFI NE + K W++PG SS + ++L
Sbjct: 1019 HHEGLLSTIKDEMISNVTLCKFGCNQKLQGFIRNECFEPKGWMVPGQSSAAYALVNDYLS 1078
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S +Y ++ +K K VADVVEALI AYLS GGELAAL+FM W+G+ +D T + Q
Sbjct: 1079 ESRNMYIARRMNLKRKSVADVVEALIGAYLSEGGELAALTFMNWVGIKVDFTTTMIQREP 1138
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
+L M N + S+++ L + + + P CY R Y
Sbjct: 1139 SIQAEKLVNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLI 1198
Query: 523 LGISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQDL 702
+ L + + + N+ +CYAQ AVK+ LHK +LHAS DL
Sbjct: 1199 TKHLYGEYPNLSPGLLTDMRSASVNN-----------ECYAQVAVKSNLHKHVLHASHDL 1247
Query: 703 QRQILDTVEHFENLDLV 753
+ I TV FE L V
Sbjct: 1248 HKHISRTVSEFERLSSV 1264
Score = 76.3 bits (186), Expect(3) = 2e-52
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++E FPKVLGDV+E LAGAI VDSG+NK+ F I+PLL +ITP+TVKL PVR
Sbjct: 1271 ESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLLGCMITPETVKLHPVR 1325
Score = 35.0 bits (79), Expect(3) = 2e-52
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLKE 1102
A+ VEVEA + T DK MAKK+A K VL SLK+
Sbjct: 1349 AFFPVEVEAKEMSFAHTARAFDKKMAKKLAYKEVLNSLKK 1388
>ref|XP_004250068.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Solanum
lycopersicum]
Length = 1370
Score = 162 bits (411), Expect(3) = 4e-52
Identities = 102/214 (47%), Positives = 124/214 (57%), Gaps = 11/214 (5%)
Frame = +3
Query: 312 MAWAGH*FGY--APLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVEALTHGSYMLPEI 485
M W G + AP RH P+NAEK+VNVRYLES+LHY+FNDPSLLVEAL+HGS MLP+I
Sbjct: 1097 MKWLGVDINFVDAPTSRHLPVNAEKLVNVRYLESLLHYKFNDPSLLVEALSHGSCMLPDI 1156
Query: 486 PRCYQMITWLCSAWNFLEMQC*IMLLQHISISNXXXXXXXXXXXXGPPL*MLCSICSQGW 665
PRCY+ + +L A L+ ++ H+ + C S
Sbjct: 1157 PRCYKRLEFLGDA--VLDY----VVTTHLYFKYPGLTPGLITDLRSASVNNECYALS-AV 1209
Query: 666 SAQAHSSCL---------ARSTKADIRYC*AFREFGSCVQAETTFPKVLGDVVEFLAGAI 818
A H L ST D + FG +AETT+PKVL DV+E LAGAI
Sbjct: 1210 KAGLHDHILYDLQVLQRHISSTVEDFKKLNLVSTFGW--EAETTYPKVLADVIESLAGAI 1267
Query: 819 FVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
FVDSGFN+DTTF IRPLLEPLITPQT+K+ P R
Sbjct: 1268 FVDSGFNQDTTFLCIRPLLEPLITPQTLKVHPAR 1301
Score = 57.0 bits (136), Expect(3) = 4e-52
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +2
Query: 980 VAYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLKECAFN 1114
+ Y+TVEVEA+GVIHK + SG ++ MA+KVASK +LKSLKE +N
Sbjct: 1325 IVYVTVEVEANGVIHKDSNSGRNQKMAEKVASKYLLKSLKEYPYN 1369
Score = 34.7 bits (78), Expect(3) = 4e-52
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Frame = +1
Query: 919 ELSELCDQKGYI--KDIVSRENGGIY 990
EL ELC QKGYI K++V RENG +Y
Sbjct: 1302 ELRELCHQKGYIKQKNVVFRENGIVY 1327
Score = 193 bits (490), Expect = 2e-46
Identities = 130/265 (49%), Positives = 161/265 (60%), Gaps = 13/265 (4%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
N H+GLL+VK+ +IISNATLC+LG ARK+PGFI N+P LK W+IPGD+SQVH FDEE L
Sbjct: 995 NDHQGLLTVKRKQIISNATLCRLGCARKMPGFIRNKPFVLKAWIIPGDNSQVHNFDEELL 1054
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGT 360
SVK+YSRGK KIK K +ADVVEALI AYLSSGGE+AALSFMKWLG+DI+ V T
Sbjct: 1055 TSSVKMYSRGKQKIKSKIMADVVEALIGAYLSSGGEVAALSFMKWLGVDINFVD---APT 1111
Query: 361 SP*MLRRLSMSDTWNPCYITGSMILLCLLKH*LTDPTCYLRFHDAIR*SPGYAALGISWR 540
S R L + N + L LL + DP+ + +A+ S G L R
Sbjct: 1112 S----RHLPV----NAEKLVNVRYLESLLHYKFNDPSLLV---EAL--SHGSCMLPDIPR 1158
Query: 541 CSARLCCYSTSPFQISRTNSRTYY*F---------EVRLC----KCYAQSAVKAGLHKRI 681
C RL + T + Y+ + ++R +CYA SAVKAGLH I
Sbjct: 1159 CYKRLEFLGDAVLDYVVT-THLYFKYPGLTPGLITDLRSASVNNECYALSAVKAGLHDHI 1217
Query: 682 LHASQDLQRQILDTVEHFENLDLVS 756
L+ Q LQR I TVE F+ L+LVS
Sbjct: 1218 LYDLQVLQRHISSTVEDFKKLNLVS 1242
>gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
Length = 1386
Score = 139 bits (350), Expect(3) = 7e-51
Identities = 99/260 (38%), Positives = 131/260 (50%), Gaps = 9/260 (3%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS KK+ +ISN LC+ G +K+ GFI +E + K W++PG SS + + L
Sbjct: 1018 HHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLP 1077
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S IY + +K K VADVVE+LI AYLS GGELAAL FM W+G+ +DL T Q S
Sbjct: 1078 ESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDLTTTKIQRDS 1137
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
P +L M N + S+++ L + + + P CY R G +
Sbjct: 1138 PIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFL-----GDSV 1192
Query: 523 LG--ISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQ 696
L I+ + C S R+ S +CYA AVKA LHK IL+AS
Sbjct: 1193 LDYLITKHLYDKYPCLSPGLLTDMRSASVNN--------ECYALVAVKANLHKHILYASH 1244
Query: 697 DLQRQILDTVEHFENLDLVS 756
L + I TV FE L S
Sbjct: 1245 HLHKHISRTVSEFEQSSLQS 1264
Score = 80.1 bits (196), Expect(3) = 7e-51
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
+++ +FPKVLGDV+E LAGAIFVDSG+NK+ F SI+PLL +ITP+TVKL PVR
Sbjct: 1269 ESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVR 1323
Score = 30.8 bits (68), Expect(3) = 7e-51
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 992 TVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
TVEV+A + T DK MAKK+A K VL LK
Sbjct: 1346 TVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1381
>gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
Length = 1374
Score = 139 bits (350), Expect(3) = 7e-51
Identities = 99/260 (38%), Positives = 131/260 (50%), Gaps = 9/260 (3%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS KK+ +ISN LC+ G +K+ GFI +E + K W++PG SS + + L
Sbjct: 1006 HHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLP 1065
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S IY + +K K VADVVE+LI AYLS GGELAAL FM W+G+ +DL T Q S
Sbjct: 1066 ESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDLTTTKIQRDS 1125
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
P +L M N + S+++ L + + + P CY R G +
Sbjct: 1126 PIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFL-----GDSV 1180
Query: 523 LG--ISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQ 696
L I+ + C S R+ S +CYA AVKA LHK IL+AS
Sbjct: 1181 LDYLITKHLYDKYPCLSPGLLTDMRSASVNN--------ECYALVAVKANLHKHILYASH 1232
Query: 697 DLQRQILDTVEHFENLDLVS 756
L + I TV FE L S
Sbjct: 1233 HLHKHISRTVSEFEQSSLQS 1252
Score = 80.1 bits (196), Expect(3) = 7e-51
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
+++ +FPKVLGDV+E LAGAIFVDSG+NK+ F SI+PLL +ITP+TVKL PVR
Sbjct: 1257 ESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVR 1311
Score = 30.8 bits (68), Expect(3) = 7e-51
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 992 TVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
TVEV+A + T DK MAKK+A K VL LK
Sbjct: 1334 TVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1369
>gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
Length = 2042
Score = 137 bits (346), Expect(3) = 2e-50
Identities = 98/260 (37%), Positives = 130/260 (50%), Gaps = 9/260 (3%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS KK+ +ISN LC+ G +K+ GFI +E + K W++PG SS + + L
Sbjct: 1674 HHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLP 1733
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S IY + +K K VADVVE+LI AYLS GGELAAL FM W+G+ +D T Q S
Sbjct: 1734 ESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDS 1793
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
P +L M N + S+++ L + + + P CY R G +
Sbjct: 1794 PIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFL-----GDSV 1848
Query: 523 LG--ISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQ 696
L I+ + C S R+ S +CYA AVKA LHK IL+AS
Sbjct: 1849 LDYLITKHLYDKYPCLSPGLLTDMRSASVNN--------ECYALVAVKANLHKHILYASH 1900
Query: 697 DLQRQILDTVEHFENLDLVS 756
L + I TV FE L S
Sbjct: 1901 HLHKHISRTVSEFEQSSLQS 1920
Score = 80.1 bits (196), Expect(3) = 2e-50
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
+++ +FPKVLGDV+E LAGAIFVDSG+NK+ F SI+PLL +ITP+TVKL PVR
Sbjct: 1925 ESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVR 1979
Score = 30.8 bits (68), Expect(3) = 2e-50
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 992 TVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
TVEV+A + T DK MAKK+A K VL LK
Sbjct: 2002 TVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 2037
>ref|NP_566199.4| endoribonuclease Dicer-like 2 [Arabidopsis thaliana]
gi|334185051|ref|NP_001189798.1| endoribonuclease
Dicer-like 2 [Arabidopsis thaliana]
gi|322518659|sp|Q3EBC8.2|DCL2_ARATH RecName:
Full=Endoribonuclease Dicer homolog 2; AltName:
Full=Dicer-like protein 2; Short=AtDCL2
gi|332640403|gb|AEE73924.1| endoribonuclease Dicer-like 2
[Arabidopsis thaliana] gi|332640405|gb|AEE73926.1|
endoribonuclease Dicer-like 2 [Arabidopsis thaliana]
Length = 1388
Score = 137 bits (346), Expect(3) = 2e-50
Identities = 98/260 (37%), Positives = 130/260 (50%), Gaps = 9/260 (3%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS KK+ +ISN LC+ G +K+ GFI +E + K W++PG SS + + L
Sbjct: 1020 HHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLP 1079
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S IY + +K K VADVVE+LI AYLS GGELAAL FM W+G+ +D T Q S
Sbjct: 1080 ESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDS 1139
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
P +L M N + S+++ L + + + P CY R G +
Sbjct: 1140 PIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFL-----GDSV 1194
Query: 523 LG--ISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQ 696
L I+ + C S R+ S +CYA AVKA LHK IL+AS
Sbjct: 1195 LDYLITKHLYDKYPCLSPGLLTDMRSASVNN--------ECYALVAVKANLHKHILYASH 1246
Query: 697 DLQRQILDTVEHFENLDLVS 756
L + I TV FE L S
Sbjct: 1247 HLHKHISRTVSEFEQSSLQS 1266
Score = 80.1 bits (196), Expect(3) = 2e-50
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
+++ +FPKVLGDV+E LAGAIFVDSG+NK+ F SI+PLL +ITP+TVKL PVR
Sbjct: 1271 ESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVR 1325
Score = 30.8 bits (68), Expect(3) = 2e-50
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 992 TVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
TVEV+A + T DK MAKK+A K VL LK
Sbjct: 1348 TVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1383
>ref|NP_001078101.1| endoribonuclease Dicer-like 2 [Arabidopsis thaliana]
gi|332640404|gb|AEE73925.1| endoribonuclease Dicer-like 2
[Arabidopsis thaliana]
Length = 1374
Score = 137 bits (346), Expect(3) = 2e-50
Identities = 98/260 (37%), Positives = 130/260 (50%), Gaps = 9/260 (3%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS KK+ +ISN LC+ G +K+ GFI +E + K W++PG SS + + L
Sbjct: 1006 HHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLP 1065
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S IY + +K K VADVVE+LI AYLS GGELAAL FM W+G+ +D T Q S
Sbjct: 1066 ESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDS 1125
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
P +L M N + S+++ L + + + P CY R G +
Sbjct: 1126 PIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFL-----GDSV 1180
Query: 523 LG--ISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQ 696
L I+ + C S R+ S +CYA AVKA LHK IL+AS
Sbjct: 1181 LDYLITKHLYDKYPCLSPGLLTDMRSASVNN--------ECYALVAVKANLHKHILYASH 1232
Query: 697 DLQRQILDTVEHFENLDLVS 756
L + I TV FE L S
Sbjct: 1233 HLHKHISRTVSEFEQSSLQS 1252
Score = 80.1 bits (196), Expect(3) = 2e-50
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
+++ +FPKVLGDV+E LAGAIFVDSG+NK+ F SI+PLL +ITP+TVKL PVR
Sbjct: 1257 ESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVR 1311
Score = 30.8 bits (68), Expect(3) = 2e-50
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 992 TVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLK 1099
TVEV+A + T DK MAKK+A K VL LK
Sbjct: 1334 TVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1369
>ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
lyrata] gi|297330209|gb|EFH60628.1| hypothetical protein
ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata]
Length = 2033
Score = 134 bits (338), Expect(2) = 2e-46
Identities = 96/260 (36%), Positives = 128/260 (49%), Gaps = 9/260 (3%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEGLLS KK+ +ISN LC+ G +K+ GFI NE + K W++PG S + + L
Sbjct: 1665 HHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRNECFEPKGWMVPGQHSAAYALVNDTLP 1724
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLVTHLCQGTS 363
S IY + +K K VADVVE+LI AYLS GGEL+AL FM W+G+ +D T + S
Sbjct: 1725 ESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELSALMFMNWVGIKVDFTTTKIERES 1784
Query: 364 P*MLRRL----SMSDTWNPCYITGSMILLCLL--KH*LTD-PTCYLRFHDAIR*SPGYAA 522
P +L M N + S+++ L + + + P CY R G +
Sbjct: 1785 PIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFL-----GDSV 1839
Query: 523 LG--ISWRCSARLCCYSTSPFQISRTNSRTYY*FEVRLCKCYAQSAVKAGLHKRILHASQ 696
L I+ + C S R+ S +CYA AVK LHK ILHAS
Sbjct: 1840 LDYLITKHLYDKYPCLSPGLLTDMRSASVNN--------ECYALVAVKENLHKHILHASH 1891
Query: 697 DLQRQILDTVEHFENLDLVS 756
L + I TV FE L S
Sbjct: 1892 VLHKHISRTVSEFEQSSLQS 1911
Score = 80.1 bits (196), Expect(2) = 2e-46
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = +3
Query: 756 QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVRVK*TM 935
+ + +FPKVLGDV+E LAGAIFVDSG+NK+ F SI+PLL +ITP+TVKL PVR +
Sbjct: 1916 ECDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTEL 1975
Query: 936 *PERLYKGHRLS*EWWHILQLRLKQMVLFTRARARDE 1046
+ ++ + + ++++ K+M A+A D+
Sbjct: 1976 CQKSQFELSKAKDFNYFTVEVKAKEMSFAHTAKASDK 2012
>ref|XP_002315119.1| hypothetical protein POPTR_0010s18870g [Populus trichocarpa]
gi|222864159|gb|EEF01290.1| hypothetical protein
POPTR_0010s18870g [Populus trichocarpa]
Length = 1408
Score = 152 bits (383), Expect(2) = 6e-41
Identities = 101/238 (42%), Positives = 127/238 (53%), Gaps = 23/238 (9%)
Frame = +3
Query: 276 LGRGVSGFIIYEMAWAGH*--FGYAPLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVE 449
L G ++ M W G F P RHF + AEK VNVRYLES+L+Y F DPSLLVE
Sbjct: 1115 LSTGGEVLALFFMDWIGIKVDFMIVPYERHFQLQAEKFVNVRYLESLLNYSFRDPSLLVE 1174
Query: 450 ALTHGSYMLPEIPRCYQMITWLCSAWNFLEMQC*IMLLQHISISNXXXXXXXXXXXXGPP 629
ALTHGSYMLPEIP CYQ + +L A +L ++ +
Sbjct: 1175 ALTHGSYMLPEIPSCYQRLEFLGDA-----------VLDYLITMHLYKEYPG-------- 1215
Query: 630 L*MLCSICSQGWSAQAHSSCLARST-----------------KADIRYC*AFRE--FGSC 752
M + + SA ++ C A+S K + F++ GS
Sbjct: 1216 --MSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGST 1273
Query: 753 V--QAETTFPKVLGDVVEFLAGAIFVDSGFNKDTTFQSIRPLLEPLITPQTVKLQPVR 920
++ET+FPKVLGDV+E LAGAI VDSG+NK+ FQSIRPLLEPLITP TV+L P R
Sbjct: 1274 FGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPAR 1331
Score = 44.3 bits (103), Expect(2) = 6e-41
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +2
Query: 983 AYITVEVEADGVIHKSTCSG*DKVMAKKVASKNVLKSLKECAF 1111
A IT+ V A+GV K T + DK AKK+ASK VLKSLKE F
Sbjct: 1356 ASITIVVGANGVTFKHTATAADKKTAKKLASKEVLKSLKESNF 1398
Score = 134 bits (338), Expect = 7e-29
Identities = 67/113 (59%), Positives = 79/113 (69%)
Frame = +1
Query: 1 NHHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFL 180
NHHEGLLS+KK KIISNA LC+ G K+PGFI NE D K W+IPGD EE L
Sbjct: 1025 NHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNESFDPKLWMIPGDKCGSDLLSEEPL 1084
Query: 181 MPSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDIDLV 339
KIY RG+ K+K K VADVVEALI AYLS+GGE+ AL FM W+G+ +D +
Sbjct: 1085 SECRKIYVRGRRKVKSKTVADVVEALIGAYLSTGGEVLALFFMDWIGIKVDFM 1137
>ref|XP_003559709.1| PREDICTED: endoribonuclease Dicer homolog 2a-like [Brachypodium
distachyon]
Length = 1402
Score = 102 bits (253), Expect(3) = 6e-41
Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Frame = +3
Query: 345 PLPRHFPMNAEKIVNVRYLESVLHYRFNDPSLLVEALTHGSYMLPEIPRCYQMITWLCSA 524
P+ R+ + E+ +N+R LE +L Y F DP LL+EALTHGSY + CYQ + +L A
Sbjct: 1129 PIERNIVIKPEEFINIRSLEIILGYNFKDPLLLIEALTHGSYQIAGPTACYQRLEFLGDA 1188
Query: 525 WNFLEMQC*IMLLQHISISNXXXXXXXXXXXXGPPL*MLCSICSQGWSAQAHSSCLA--- 695
+L H+ P L S + AH+S A
Sbjct: 1189 -----------VLDHL----VTVYYYNTYPECTPALLTDLRSASVNNNCYAHASVKAGLN 1233
Query: 696 -----RSTKADIRYC*AFREFGSCV-------QAETTFPKVLGDVVEFLAGAIFVDSGFN 839
ST+ + FG +A PKVLGDV+E +AGAI++DS ++
Sbjct: 1234 KHILHSSTELHRKMAYYLENFGQAFTGPSHGWEAGIGLPKVLGDVIESIAGAIYLDSKYD 1293
Query: 840 KDTTFQSIRPLLEPLITPQTVKLQPVR 920
K+ ++S++PLLEPL TP+TV+ PV+
Sbjct: 1294 KEMVWRSMKPLLEPLATPETVERDPVK 1320
Score = 90.1 bits (222), Expect(3) = 6e-41
Identities = 50/109 (45%), Positives = 65/109 (59%)
Frame = +1
Query: 4 HHEGLLSVKKNKIISNATLCKLGSARKIPGFIHNEPLDLKTWLIPGDSSQVHKFDEEFLM 183
HHEG L+ K +ISNA LC+L + G+I E + K W IPG ++ F +
Sbjct: 1015 HHEGTLTKMKKNLISNAALCQLACNNNLVGYIQGEVFNPKGWFIPGLGYDTCG-NKSFCL 1073
Query: 184 PSVKIYSRGKLKIKCKRVADVVEALICAYLSSGGELAALSFMKWLGLDI 330
S +YS K+ IK KR+AD VEALI AYLS+ GE AA F+ LG+DI
Sbjct: 1074 SSNGMYSLRKISIKSKRIADTVEALIGAYLSAAGEQAAFLFINSLGMDI 1122
Score = 24.6 bits (52), Expect(3) = 6e-41
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 919 ELSELCDQKGYIKDIVSRENGGI 987
EL E CD++ Y + GG+
Sbjct: 1321 ELQEFCDRRSYSRSYTKTHEGGV 1343