BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00011081
         (867 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        147   4e-33
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   145   2e-32
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   145   2e-32
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               142   1e-31
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                142   1e-31
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...   142   2e-31
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         141   4e-31
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   141   4e-31
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           141   4e-31
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     141   4e-31
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   139   1e-30
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   139   2e-30
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   138   3e-30
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   137   5e-30
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   135   2e-29
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   135   2e-29
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           135   3e-29
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   133   1e-28
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   133   1e-28
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   132   1e-28

>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  147 bits (372), Expect = 4e-33
 Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195  GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
            G + P  K +E+  A+ V          V    C   S  ++W+LD+ACT HM   RDWF
Sbjct: 260  GKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWF 317

Query: 375  SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
            ++YE   GGTV+M ++    + GIG V+++  DG +RT+++V H+P+LK           
Sbjct: 318  ATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDR 377

Query: 519  ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                           K      KAS ++    H Q   +L           + D   L +
Sbjct: 378  KGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWH 437

Query: 624  MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
            MRLGHM+  G   LS R LL G+  S L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 438  MRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 497

Query: 804  DLWGPSKLPSKGGKR 848
            DLWGP++  S GG R
Sbjct: 498  DLWGPARKTSFGGAR 512


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  145 bits (366), Expect = 2e-32
 Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 14/228 (6%)
 Frame = +3

Query: 201 FCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSS 380
           + P  K +E+  A+ V          V    C   S  ++W+LD+ACT HM   RDWF++
Sbjct: 204 YIPKGKKEEEGKAAIVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFAT 261

Query: 381 YEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*KAS*RT 557
           YE   GGTV+M ++    + GIG V+++  DG +RT+++V H P+LK++     +   R 
Sbjct: 262 YEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCIRTLSDVRHFPNLKRSLISL-RTLDRK 320

Query: 558 TFTHWQEAPLLAL-------------HDDKARL*YMRLGHMNARGREMLSNRNLLKGEKF 698
            + +     +L L             + D   L +MRLGHM+  G   LS R LL G+  
Sbjct: 321 GYKYSGGDGILKLILGNVAVVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSI 380

Query: 699 STLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPSKLPSKGG 842
             L+FC+HC+  K K+  F+T  H T   LDY+HSDLWGP++  S GG
Sbjct: 381 GKLKFCEHCIFGKHKRVKFNTSTHTTEGTLDYVHSDLWGPARKTSFGG 428


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  145 bits (365), Expect = 2e-32
 Identities = 86/251 (34%), Positives = 124/251 (49%), Gaps = 39/251 (15%)
 Frame = +3

Query: 204 CPTTKSKEKA--SASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFS 377
           CP  + KEK    A+  E   D ++D  L +S +   Y ++W+LDS CT HM   RDWF 
Sbjct: 184 CPKLQKKEKVLQDANVAECKSDVESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFF 243

Query: 378 SY-EKSGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKN---------- 524
            + E  GG V M N+     VGIG ++LR HDG+ R + +V +VP LKKN          
Sbjct: 244 EFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESK 303

Query: 525 ----------------XXXX*KAS*RTTFTHWQEAPLLAL----------HDDKARL*YM 626
                                K   +    ++Q + ++              +  +L +M
Sbjct: 304 GLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHM 363

Query: 627 RLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSD 806
           RLGH   +  ++ + + LLKG K   LEFC+HCVL K ++  F T  H T  +LDY+HSD
Sbjct: 364 RLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSD 423

Query: 807 LWGPSKLPSKG 839
           +WGP+K PS G
Sbjct: 424 VWGPAKTPSIG 434


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  142 bits (359), Expect = 1e-31
 Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195 GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
           G + P  K +++  A+ V          V    C   S  ++W+LD+ACT HM   RDWF
Sbjct: 77  GKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWF 134

Query: 375 SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
           ++YE   GGTV+M ++    + GIG V+++  DG +RT+++V H+P+LK           
Sbjct: 135 ATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDC 194

Query: 519 ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                          K      KA  ++    H Q   +L           + D   L +
Sbjct: 195 KGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWH 254

Query: 624 MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
           MRLGHM+  G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 255 MRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 314

Query: 804 DLWGPSKLPSKGGKR 848
           DLWGP++  S GG R
Sbjct: 315 DLWGPARKTSFGGAR 329


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  142 bits (359), Expect = 1e-31
 Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195  GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
            G + P  K +++  A+ V          V    C   S  ++W+LD+ACT HM   RDWF
Sbjct: 245  GKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWF 302

Query: 375  SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
            ++YE   GGTV+M ++    + GIG V+++  DG +RT+++V H+P+LK           
Sbjct: 303  ATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDC 362

Query: 519  ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                           K      KA  ++    H Q   +L           + D   L +
Sbjct: 363  KGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWH 422

Query: 624  MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
            MRLGHM+  G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 423  MRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 482

Query: 804  DLWGPSKLPSKGGKR 848
            DLWGP++  S GG R
Sbjct: 483  DLWGPARKTSFGGAR 497


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1131

 Score =  142 bits (357), Expect = 2e-31
 Identities = 84/249 (33%), Positives = 121/249 (48%), Gaps = 38/249 (15%)
 Frame = +3

Query: 216 KSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE--K 389
           K K    AS V    +SD+   L +     +  ++W+LD+AC+ H+   RDWFSSY+  +
Sbjct: 207 KRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQ 266

Query: 390 SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*---------- 539
           +G  V M ++    IVGIG V+++ HDG  RT+ +V ++P + +N               
Sbjct: 267 NGDVVRMGDDNPHEIVGIGSVQIKTHDGMTRTLKDVRYIPGMARNLISLSTLDAEGYKYS 326

Query: 540 ---------KAS*RTTFTHWQEAPLLALHDD-----------------KARL*YMRLGHM 641
                    K S     +    A L  L                    K  L +MRLGHM
Sbjct: 327 GLGGVVKVSKGSLVYMISDMNSANLYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGHM 386

Query: 642 NARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPS 821
           +  G   L  RNLL G     ++FC+HCV  K K+  F+T  H+T  +LDY+H+DLWGPS
Sbjct: 387 SELGMAELMKRNLLDGYTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPS 446

Query: 822 KLPSKGGKR 848
           + PS GG R
Sbjct: 447 RKPSLGGAR 455


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  141 bits (355), Expect = 4e-31
 Identities = 85/255 (33%), Positives = 125/255 (49%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195 GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
           G + P  K +E+  A+ V          V    C   S  ++W+LD+ACT HM   RDWF
Sbjct: 92  GKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWF 149

Query: 375 SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
           ++YE   GGTV+M ++    + GIG V+++  DG + T+++V H+P+LK           
Sbjct: 150 ATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDR 209

Query: 519 ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                          K      KA  ++    H +   +L           + D   L +
Sbjct: 210 KGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWH 269

Query: 624 MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
           MRLGHM+  G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329

Query: 804 DLWGPSKLPSKGGKR 848
           DLWGP++  S GG R
Sbjct: 330 DLWGPARKTSFGGAR 344


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  141 bits (355), Expect = 4e-31
 Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 37/248 (14%)
 Frame = +3

Query: 216 KSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYEK-S 392
           K +E+  A+ V          V  + C   S  ++W+LD+ACT HM   RDWF++YE   
Sbjct: 233 KKEEEGKAAVVTDEKSDAELLVAYVGCAQTS--DQWILDTACTYHMCPNRDWFATYETVQ 290

Query: 393 GGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK------------------ 518
           GGTV+M ++    + GIG V+++  DG +RT+++V H+P+LK                  
Sbjct: 291 GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSG 350

Query: 519 --------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*YMRLGHMN 644
                   K      KA  ++    H +   +L           + D   L +MRLGHM+
Sbjct: 351 GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMS 410

Query: 645 ARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPSK 824
             G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HSDLWGP++
Sbjct: 411 EIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAR 470

Query: 825 LPSKGGKR 848
             S GG R
Sbjct: 471 KTSFGGAR 478


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  141 bits (355), Expect = 4e-31
 Identities = 85/255 (33%), Positives = 125/255 (49%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195 GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
           G + P  K +E+  A+ V          V    C   S  ++W+LD+ACT HM   RDWF
Sbjct: 92  GKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWF 149

Query: 375 SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
           ++YE   GGTV+M ++    + GIG V+++  DG + T+++V H+P+LK           
Sbjct: 150 ATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDR 209

Query: 519 ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                          K      KA  ++    H +   +L           + D   L +
Sbjct: 210 KGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWH 269

Query: 624 MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
           MRLGHM+  G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329

Query: 804 DLWGPSKLPSKGGKR 848
           DLWGP++  S GG R
Sbjct: 330 DLWGPARKTSFGGAR 344


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  141 bits (355), Expect = 4e-31
 Identities = 85/253 (33%), Positives = 123/253 (48%), Gaps = 37/253 (14%)
 Frame = +3

Query: 201 FCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSS 380
           + P  K +E+  A+ V          V    C   S  ++W+LD+ACT HM   RDWF++
Sbjct: 171 YIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFAT 228

Query: 381 YEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK------------- 518
           YE   GGTV+M ++    + GIG V+++  DG +RT+ +V H+P+LK             
Sbjct: 229 YEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKG 288

Query: 519 -------------KNXXXX*KAS*R-TTFTHWQEAPLLA---------LHDDKARL*YMR 629
                        K      KA  +     H +   +L           + D   L +MR
Sbjct: 289 YKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 348

Query: 630 LGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDL 809
           LGHM+  G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HSDL
Sbjct: 349 LGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 408

Query: 810 WGPSKLPSKGGKR 848
           WGP++  S GG R
Sbjct: 409 WGPARKTSFGGAR 421


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  139 bits (350), Expect = 1e-30
 Identities = 86/256 (33%), Positives = 127/256 (49%), Gaps = 39/256 (15%)
 Frame = +3

Query: 204  CPTTKS---KEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
            CP  K    K+  SA+  E   +S+ D  L ++  +  + + WVLDS  + H+  RR+WF
Sbjct: 238  CPKKKKQSEKQSVSAAVAEEDTNSEEDIAL-VADEHTHHSDVWVLDSGASYHICPRREWF 296

Query: 375  SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*---- 539
            ++YE+  GG++ M+N++   +VG G +++R HDG+  T+ EV HVP + KN         
Sbjct: 297  TTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDS 356

Query: 540  ----------------------KAS*RTTFTHWQEAPLLAL---------HDDKARL*YM 626
                                  K   R T    Q + +              D  +L ++
Sbjct: 357  KGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHI 416

Query: 627  RLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSD 806
            RLGHM  RG ++LS  +LL G K  +LEFC+HCV  K  +  F    H+T   LDYIHSD
Sbjct: 417  RLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSD 476

Query: 807  LWGPSKLPSKGGKRSF 854
             WGP ++ S GG R F
Sbjct: 477  CWGPCRVESLGGCRFF 492


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  139 bits (349), Expect = 2e-30
 Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 38/249 (15%)
 Frame = +3

Query: 216  KSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE--K 389
            K K    AS V    +SD+   L +     +  ++W+LD+AC+ H+   RDWFSSY+  +
Sbjct: 257  KRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQ 316

Query: 390  SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*---------- 539
            +   V M ++    IVGIG V+++ HDG  RT+ +V H+P + +N               
Sbjct: 317  NEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYS 376

Query: 540  ---------KAS*RTTFTHWQEAPLLALHDD-----------------KARL*YMRLGHM 641
                     K S          A L  L                    K  L +MRLGHM
Sbjct: 377  GSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHM 436

Query: 642  NARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPS 821
            +  G   L  RNLL G     ++FC+HCV  K K+  F+T  H+T  +LDY+H+DLWGPS
Sbjct: 437  SELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPS 496

Query: 822  KLPSKGGKR 848
            + PS GG R
Sbjct: 497  RKPSLGGAR 505


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  138 bits (347), Expect = 3e-30
 Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 38/249 (15%)
 Frame = +3

Query: 216 KSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE--K 389
           K K    AS V    +SD+   L +     S  ++W+LD+ C+ H+   RDWFSSY+  +
Sbjct: 152 KRKSDGKASVVTSADNSDSGDCLVVFVVCVSSHDEWILDTTCSFHICINRDWFSSYKSVQ 211

Query: 390 SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*---------- 539
           +G  V M ++    IVGIG V+++ HDG  RT+ +V H+P + +N               
Sbjct: 212 NGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYS 271

Query: 540 ---------KAS*RTTFTHWQEAPLLALHDD-----------------KARL*YMRLGHM 641
                    K S          A L  L                    K  + +MRLGHM
Sbjct: 272 GSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHM 331

Query: 642 NARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPS 821
           +  G   L  RNLL G     ++FC+HCV  K K+  F+T  H+T  +LDY+H+DLWGPS
Sbjct: 332 SELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPS 391

Query: 822 KLPSKGGKR 848
           + PS GG R
Sbjct: 392 RKPSLGGAR 400


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  137 bits (345), Expect = 5e-30
 Identities = 85/253 (33%), Positives = 124/253 (49%), Gaps = 34/253 (13%)
 Frame = +3

Query: 192 KGWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDW 371
           KG + P  K +E+  A+            V    C   S E  W+LD+ CT HM   RDW
Sbjct: 201 KGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQTSDE--WLLDTGCTYHMCPNRDW 258

Query: 372 FSSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*--- 539
           F++YE   GG V+M +N    + G+G ++++  DG +RT+++V H+P LK+N        
Sbjct: 259 FTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLD 318

Query: 540 -----------------------KAS*RTT-FTHWQEAPLL----ALHDDKAR--L*YMR 629
                                  KA  +     H Q   ++    A+ D  +   L +MR
Sbjct: 319 RKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVAAVTDSLSNSDLWHMR 378

Query: 630 LGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDL 809
           LGHM+  G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HSDL
Sbjct: 379 LGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDL 438

Query: 810 WGPSKLPSKGGKR 848
           WGP++  S GG R
Sbjct: 439 WGPARKRSFGGAR 451


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  135 bits (340), Expect = 2e-29
 Identities = 83/255 (32%), Positives = 123/255 (48%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195  GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
            G + P  K +E+  A+ V          V    C   S  ++W+L++AC  HM   RDWF
Sbjct: 467  GKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWF 524

Query: 375  SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
            ++YE    GTV+M ++    + GIG V+++  DG +RT+++V H+P+LK           
Sbjct: 525  ATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDR 584

Query: 519  ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                           K      KA  ++    H +   +L           + D   L +
Sbjct: 585  KGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWH 644

Query: 624  MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
            MRLGHM   G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 645  MRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 704

Query: 804  DLWGPSKLPSKGGKR 848
            DLWGP++  S GG R
Sbjct: 705  DLWGPARKTSFGGTR 719


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  135 bits (340), Expect = 2e-29
 Identities = 83/255 (32%), Positives = 123/255 (48%), Gaps = 37/255 (14%)
 Frame = +3

Query: 195  GWFCPTTKSKEKASASTVEHVHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWF 374
            G + P  K +E+  A+ V          V    C   S  ++W+L++AC  HM   RDWF
Sbjct: 260  GKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWF 317

Query: 375  SSYEK-SGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLK----------- 518
            ++YE    GTV+M ++    + GIG V+++  DG +RT+++V H+P+LK           
Sbjct: 318  ATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDR 377

Query: 519  ---------------KNXXXX*KAS*RTT-FTHWQEAPLLA---------LHDDKARL*Y 623
                           K      KA  ++    H +   +L           + D   L +
Sbjct: 378  KGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWH 437

Query: 624  MRLGHMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHS 803
            MRLGHM   G   LS R LL G+    L+FC+HC+  K K+  F+T  H T  +LDY+HS
Sbjct: 438  MRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 497

Query: 804  DLWGPSKLPSKGGKR 848
            DLWGP++  S GG R
Sbjct: 498  DLWGPARKTSFGGTR 512


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  135 bits (339), Expect = 3e-29
 Identities = 85/251 (33%), Positives = 121/251 (48%), Gaps = 40/251 (15%)
 Frame = +3

Query: 216  KSKEKASASTVEH-VHDSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE-- 386
            K+K+    S     V D D+   L +     +  ++W+LDSAC+ H+  +R+WFSSY+  
Sbjct: 256  KNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPV 315

Query: 387  KSGGTVVMSNNATFAIVGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*-------KA 545
            + G  V M ++   AIVGIG V+++  DG  RT+  V ++P + +N            K 
Sbjct: 316  QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKY 375

Query: 546  S*RTTFTHWQEAPLLALHDD------------------------------KARL*YMRLG 635
            S         +  L+ L  D                              K  L +MRLG
Sbjct: 376  SGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLG 435

Query: 636  HMNARGREMLSNRNLLKGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWG 815
            HM+  G   L  RNLLKG   S ++FC+HC+  K K+  F+T  H T   LDY+H+DLWG
Sbjct: 436  HMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWG 495

Query: 816  PSKLPSKGGKR 848
            PSK PS GG R
Sbjct: 496  PSKKPSLGGAR 506


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  133 bits (334), Expect = 1e-28
 Identities = 80/235 (34%), Positives = 114/235 (48%), Gaps = 39/235 (16%)
 Frame = +3

Query: 261 DSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE--KSGGTVVMSNNATFAI 434
           D D+   L +     +  ++W+LDSAC+ H+  +R+WFSSY+  + G  V M ++   AI
Sbjct: 270 DDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAI 329

Query: 435 VGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*KAS*R-------------------- 554
           VGIG V+++  DG  RT+  V ++P + +N                              
Sbjct: 330 VGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVC 389

Query: 555 ---------------TTFTHWQEAPLLALHDD--KARL*YMRLGHMNARGREMLSNRNLL 683
                           T T    A     +D+  K  L +MRLGHM+  G   L  RNLL
Sbjct: 390 LKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 449

Query: 684 KGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPSKLPSKGGKR 848
           KG   S ++FC+HC+  K K+  F+T  H T   LDY+H+DLWGPSK PS GG R
Sbjct: 450 KGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGAR 504


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  133 bits (334), Expect = 1e-28
 Identities = 80/235 (34%), Positives = 114/235 (48%), Gaps = 39/235 (16%)
 Frame = +3

Query: 261 DSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE--KSGGTVVMSNNATFAI 434
           D D+   L +     +  ++W+LDSAC+ H+  +R+WFSSY+  + G  V M ++   AI
Sbjct: 270 DDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAI 329

Query: 435 VGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*KAS*R-------------------- 554
           VGIG V+++  DG  RT+  V ++P + +N                              
Sbjct: 330 VGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVC 389

Query: 555 ---------------TTFTHWQEAPLLALHDD--KARL*YMRLGHMNARGREMLSNRNLL 683
                           T T    A     +D+  K  L +MRLGHM+  G   L  RNLL
Sbjct: 390 LKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 449

Query: 684 KGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPSKLPSKGGKR 848
           KG   S ++FC+HC+  K K+  F+T  H T   LDY+H+DLWGPSK PS GG R
Sbjct: 450 KGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGAR 504


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  132 bits (333), Expect = 1e-28
 Identities = 80/235 (34%), Positives = 114/235 (48%), Gaps = 39/235 (16%)
 Frame = +3

Query: 261 DSDNDYVLTISCNNESYENKWVLDSACTLHMMFRRDWFSSYE--KSGGTVVMSNNATFAI 434
           D D+   L +     +  ++W+LDSAC+ H+  +R+WFSSY+  + G  V M ++   AI
Sbjct: 270 DDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAI 329

Query: 435 VGIG*VRLRCHDGTVRTVTEVLHVPDLKKNXXXX*KAS*R-------------------- 554
           VGIG V+++  DG  RT+  V ++P + +N                              
Sbjct: 330 VGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVC 389

Query: 555 ---------------TTFTHWQEAPLLALHDD--KARL*YMRLGHMNARGREMLSNRNLL 683
                           T T    A     +D+  K  L +MRLGHM+  G   L  RNLL
Sbjct: 390 LKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 449

Query: 684 KGEKFSTLEFCKHCVLEK*KKASFSTGKHQTGRVLDYIHSDLWGPSKLPSKGGKR 848
           KG   S ++FC+HC+  K K+  F+T  H T   LDY+H+DLWGPSK PS GG R
Sbjct: 450 KGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGAR 504