BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00010333
         (750 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 449   e-124
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   424   e-116
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   424   e-116
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   423   e-116
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   423   e-116
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   423   e-116
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   423   e-116
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   423   e-116
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   423   e-116
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   366   4e-99
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   320   2e-85
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   219   1e-54
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   210   5e-52
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               205   1e-50
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   204   3e-50
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   203   6e-50
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 201   3e-49
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   201   3e-49
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 200   5e-49
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   199   6e-49

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  449 bits (1156), Expect = e-124
 Identities = 216/249 (86%), Positives = 228/249 (91%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           + YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 DPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLRAD+QR+L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNTRLRGPPGF +PFTRP PVNP+DA+T  +FREF      S 
Sbjct: 391 IKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSP 450

Query: 29  PTTIADSLE 3
             T+ + LE
Sbjct: 451 TATVTEMLE 459


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  424 bits (1091), Expect = e-116
 Identities = 206/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFHKY QLEWLTVGHLTA    T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL +   ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           I+ALDWQPITLEFPVR VNT LRGPPGF +PFTRP PVNP+DA+T  +F+ F   A A+ 
Sbjct: 391 IQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA-AAV 449

Query: 29  PTTIADSLE 3
            TT+    E
Sbjct: 450 ETTLEQQAE 458


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  424 bits (1089), Expect = e-116
 Identities = 204/242 (84%), Positives = 221/242 (91%), Gaps = 3/242 (1%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFHKY QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL++ I ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF---SYTAE 39
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   + TAE
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAE 450

Query: 38  AS 33
           A+
Sbjct: 451 AA 452


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  423 bits (1088), Expect = e-116
 Identities = 205/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   A A+ 
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFC-QATATV 449

Query: 29  PTTIADSLE 3
             T+A   E
Sbjct: 450 EATLAQQSE 458


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  423 bits (1088), Expect = e-116
 Identities = 205/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   A A+ 
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFC-QATATV 449

Query: 29  PTTIADSLE 3
             T+A   E
Sbjct: 450 EATLAQQSE 458


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  423 bits (1088), Expect = e-116
 Identities = 205/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   A A+ 
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFC-QATATV 449

Query: 29  PTTIADSLE 3
             T+A   E
Sbjct: 450 EATLAQQSE 458


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  423 bits (1088), Expect = e-116
 Identities = 205/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   A A+ 
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFC-QATATV 449

Query: 29  PTTIADSLE 3
             T+A   E
Sbjct: 450 EATLAQQSE 458


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  423 bits (1088), Expect = e-116
 Identities = 205/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   A A+ 
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFC-QATATV 449

Query: 29  PTTIADSLE 3
             T+A   E
Sbjct: 450 EATLAQQSE 458


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  423 bits (1087), Expect = e-116
 Identities = 205/249 (82%), Positives = 221/249 (88%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT
Sbjct: 211 AGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTT 270

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           EHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY
Sbjct: 271 EHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 330

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKL
Sbjct: 331 QPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKL 390

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F   A A+ 
Sbjct: 391 IKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFC-QATATV 449

Query: 29  PTTIADSLE 3
             T+A   E
Sbjct: 450 EXTLAQQSE 458


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  366 bits (940), Expect = 4e-99
 Identities = 182/249 (73%), Positives = 198/249 (79%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASYFHKYDQLEWLTVGHLTA   PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T 
Sbjct: 210 AGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATN 269

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
           + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+      + +QLISTKELQHY
Sbjct: 270 DQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHY 329

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QPSEITLLVNYFEFTA+LDSHTCFEDV    L  +        I R+LQFFRGRPSFVKL
Sbjct: 330 QPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKL 388

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTAEAST 30
           IKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNPEDAD    F++FS    ++ 
Sbjct: 389 IKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTP 448

Query: 29  PTTIADSLE 3
             T+   LE
Sbjct: 449 KPTVEAVLE 457


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score =  320 bits (821), Expect = 2e-85
 Identities = 156/228 (68%), Positives = 181/228 (79%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTT 570
           AGASY+HKYDQL+WLT G+L + +  T+TAQRLETKGANHLFIFQRG YLTPERRTFTT 
Sbjct: 211 AGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTA 269

Query: 569 EHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHY 390
             YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+
Sbjct: 270 TSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHF 329

Query: 389 QPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKL 210
           QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P   KL
Sbjct: 330 QPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKL 389

Query: 209 IKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRA 66
           IKAL WQP+ LEF V TV    R PPGF +P  RP PVN  DA T  A
Sbjct: 390 IKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA 437


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  219 bits (557), Expect = 1e-54
 Identities = 110/207 (53%), Positives = 143/207 (69%), Gaps = 6/207 (2%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRT 582
           AGA+Y HKY+QLEW+ VG    A++      +T+Q LETKGANHLFIFQRG +LTPE R 
Sbjct: 213 AGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRC 272

Query: 581 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 402
           F+T   YVT+P IFLP+++N R PI KT   Q+F Y+KSVK   ERDIWAK RQL+ T E
Sbjct: 273 FSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSE 332

Query: 401 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRA--DIQRVLQFFRGR 228
           LQ Y P E+TLLVNYF   A L S TCF++VLSG + ++L +P  A  +IQ+   F  G 
Sbjct: 333 LQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GN 390

Query: 227 PSFVKLIKALDWQPITLEFPVRTVNTR 147
             F +L++AL+W  +TL +P +T + R
Sbjct: 391 EEFEQLMEALEWVDVTLTYPTKTFDNR 417


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  210 bits (534), Expect = 5e-52
 Identities = 105/198 (53%), Positives = 134/198 (67%)
 Frame = -2

Query: 746 GASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTE 567
           GA Y H + QL+WL VG +   NQ  ITAQR+E+K ANHLF+FQRGN  TP  R F T +
Sbjct: 211 GAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCK 269

Query: 566 HYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQ 387
            YVT+P IFLP+K+N R PI KT++MQ+F Y+K V +  ERDI+AK RQLI T +LQ + 
Sbjct: 270 KYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFD 329

Query: 386 PSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLI 207
            SE+  +VNYF F A  DS TCF D+LSG+L ++L +PL A +     F  G P F KL+
Sbjct: 330 ASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLL 389

Query: 206 KALDWQPITLEFPVRTVN 153
           KAL WQ IT+   V  +N
Sbjct: 390 KALQWQDITMVVTVADIN 407


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  205 bits (521), Expect = 1e-50
 Identities = 105/217 (48%), Positives = 141/217 (64%), Gaps = 3/217 (1%)
 Frame = -2

Query: 746 GASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTE 567
           GA Y H+  Q++WL  GH+    +  ITAQ+LETK ANHLFI++RG Y TPE R F T  
Sbjct: 219 GAEYVHELKQIDWLRFGHIIDG-KVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQT 277

Query: 566 HYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQ 387
            YVT+P IFLP ++N R PI KT++MQ+F Y+K+V  AKERDIWAK RQLI T++LQ Y 
Sbjct: 278 KYVTLPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYS 337

Query: 386 PSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLI 207
           P+EI  LVNYF F A   + T F+ +L G++I+++ RP+ A  +   Q   G   F +L+
Sbjct: 338 PTEIVHLVNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLL 397

Query: 206 KALDWQPITLE---FPVRTVNTRLRGPPGFHNPFTRP 105
           +AL W  I L     PV+T + R  G    ++PFT P
Sbjct: 398 EALSWDEIDLTLDVLPVKTHDWRRMGVADSNDPFTYP 434


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  204 bits (519), Expect = 3e-50
 Identities = 102/210 (48%), Positives = 135/210 (64%), Gaps = 12/210 (5%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLT--AANQP----------TITAQRLETKGANHLFIFQRGN 606
           AGASY+H+Y QL WL VG +     N P           +TAQR+ETKGANHLF+FQRG 
Sbjct: 211 AGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGR 270

Query: 605 YLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKF 426
             TP+ R+  T   Y+TVP +FLP+K+N R P+ KTI  QMF YIKSVK+  ERDI++K 
Sbjct: 271 LQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKL 330

Query: 425 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVL 246
           RQLI T ELQ Y P E+ LL NYF   + L S    E+VL+G+L ++L RP+++ +   +
Sbjct: 331 RQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFI 390

Query: 245 QFFRGRPSFVKLIKALDWQPITLEFPVRTV 156
               G+P F +L++AL W  + L  PVR V
Sbjct: 391 HKLFGQPEFAQLLEALLWTNVDLILPVRYV 420


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
           replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  203 bits (516), Expect = 6e-50
 Identities = 100/207 (48%), Positives = 135/207 (65%)
 Frame = -2

Query: 746 GASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTE 567
           GA Y H+  QL+WL+VG LT     TITAQ++ETK ANHLFIFQRG+ +TP  R F+T  
Sbjct: 218 GAEYVHELKQLDWLSVGRLTDG-VTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTET 276

Query: 566 HYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQ 387
            +VT+P IFLPEK+N R PI KT++MQMF Y+K VK+  ERDIWAK+RQLI T++LQ + 
Sbjct: 277 KFVTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFS 336

Query: 386 PSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLI 207
             E+  L NYF F     S  CF+DVL G  + R  +P++   + V Q   G   FV+L+
Sbjct: 337 AIELLHLTNYFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLV 396

Query: 206 KALDWQPITLEFPVRTVNTRLRGPPGF 126
           +AL+W  + L+   +  + + R   GF
Sbjct: 397 RALEWTEVDLKLDTKNYDFKRREGNGF 423


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  201 bits (510), Expect = 3e-49
 Identities = 99/201 (49%), Positives = 134/201 (66%), Gaps = 4/201 (1%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRT 582
           AGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRT 272

Query: 581 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 402
           F     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T E
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAE 332

Query: 401 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPS 222
           LQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L +P+ A          G+  
Sbjct: 333 LQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEE 392

Query: 221 FVKLIKALDWQPITLEFPVRT 159
           F +L++AL+W  ++L + V T
Sbjct: 393 FEQLMEALEWVDVSLSYKVET 413


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  201 bits (510), Expect = 3e-49
 Identities = 99/201 (49%), Positives = 134/201 (66%), Gaps = 4/201 (1%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRT 582
           AGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRT 272

Query: 581 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 402
           F     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T E
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAE 332

Query: 401 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPS 222
           LQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L +P+ A          G+  
Sbjct: 333 LQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEE 392

Query: 221 FVKLIKALDWQPITLEFPVRT 159
           F +L++AL+W  ++L + V T
Sbjct: 393 FEQLMEALEWVDVSLSYKVET 413


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  200 bits (508), Expect = 5e-49
 Identities = 99/201 (49%), Positives = 133/201 (66%), Gaps = 4/201 (1%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRT 582
           AGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRT 272

Query: 581 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 402
           F     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T E
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAE 332

Query: 401 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPS 222
           LQ Y   E+ L+VNY+   + LDS TCF++VL+G  +++L +P+ A          G+  
Sbjct: 333 LQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEE 392

Query: 221 FVKLIKALDWQPITLEFPVRT 159
           F +L++AL+W  ++L + V T
Sbjct: 393 FEQLMEALEWVDVSLSYKVET 413


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
           replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  199 bits (507), Expect = 6e-49
 Identities = 99/201 (49%), Positives = 133/201 (66%), Gaps = 4/201 (1%)
 Frame = -2

Query: 749 AGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRT 582
           AGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRT 272

Query: 581 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 402
           F     +VT+P IFLP+KYN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T E
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAE 332

Query: 401 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPS 222
           LQ Y   E+ L+VNY+   + LDS TCF++VL+G  +++L +P+ A          G+  
Sbjct: 333 LQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEE 392

Query: 221 FVKLIKALDWQPITLEFPVRT 159
           F +L++AL+W  ++L + V T
Sbjct: 393 FEQLMEALEWVDVSLSYRVET 413