BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00010332
         (1300 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 631   e-178
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   620   e-175
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   620   e-175
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   618   e-174
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   617   e-174
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   617   e-174
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   617   e-174
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   617   e-174
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   617   e-174
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   580   e-163
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   446   e-122
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   243   1e-61
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   241   5e-61
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   236   2e-59
gb|ABO41877.1| RNA dependent RNA polymerase [Cymbidium mosaic vi...   229   2e-57
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   227   7e-57
gb|AAB71853.1| RNA replicase [Cymbidium mosaic virus]                 227   7e-57
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               227   9e-57
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 224   5e-56
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   224   5e-56

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  631 bits (1628), Expect = e-178
 Identities = 313/433 (72%), Positives = 342/433 (78%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL APNQPT+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PV
Sbjct: 369  PLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T  +FREF           + + LE S E+  +HTSLKV    LS EQL ALHE
Sbjct: 429  NPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHE 488

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG++R GGP+LPK                    T  S+ L +  H    P        P 
Sbjct: 489  LGNSRCGGPMLPK---------------RSSNHTHTSSDLLRRRH----PRQQRSTNPPM 529

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
             +   K   +GFEALEIQTDPSTG+ IMPI D R+LP+A +P HW+ P   K++ TLR L
Sbjct: 530  GSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNL 589

Query: 1261 NRFPTPWCPDRAR 1299
            NRFPTPW PDRAR
Sbjct: 590  NRFPTPWSPDRAR 602


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  620 bits (1599), Expect = e-175
 Identities = 307/433 (70%), Positives = 339/433 (78%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F           +  +L   +E    H SL +  + L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATAT-----VEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG+ R GGPLLPK                           ++   + + P   DP+TLPW
Sbjct: 484  LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGL
Sbjct: 542  VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGL 601

Query: 1261 NRFPTPWCPDRAR 1299
            NR+PTPW PDRAR
Sbjct: 602  NRYPTPWNPDRAR 614


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  620 bits (1598), Expect = e-175
 Identities = 307/433 (70%), Positives = 339/433 (78%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F           +  +L   +E    H SL +  + L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG+ R GGPLLPK                           ++   + + P   DP+TLPW
Sbjct: 484  LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGL
Sbjct: 542  VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGL 601

Query: 1261 NRFPTPWCPDRAR 1299
            NR+PTPW PDRAR
Sbjct: 602  NRYPTPWNPDRAR 614


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  618 bits (1594), Expect = e-174
 Identities = 310/438 (70%), Positives = 339/438 (77%), Gaps = 5/438 (1%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F              +LE  AE    H SL +    L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLN-----QGDHTDEAPVNSDP 1065
            LG+TR GGPLLPK                      A  S N     +   T + P   DP
Sbjct: 484  LGNTRCGGPLLPK-------GPAKLTTVEPCPDLPAENSANPEPPRKTTQTLDLPHPEDP 536

Query: 1066 ATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLT 1245
             TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++++
Sbjct: 537  TTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIIS 596

Query: 1246 TLRGLNRFPTPWCPDRAR 1299
            TLR  NR+PTPW PDR+R
Sbjct: 597  TLRSFNRYPTPWNPDRSR 614


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  617 bits (1592), Expect = e-174
 Identities = 306/433 (70%), Positives = 338/433 (78%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F           +  +L   +E    H SL +  + L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG+ R G PLLPK                           ++   + + P   DP+TLPW
Sbjct: 484  LGNARCGAPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGL
Sbjct: 542  VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGL 601

Query: 1261 NRFPTPWCPDRAR 1299
            NR+PTPW PDRAR
Sbjct: 602  NRYPTPWNPDRAR 614


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  617 bits (1591), Expect = e-174
 Identities = 306/433 (70%), Positives = 338/433 (78%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F           +  +L   +E    H SL +    L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG+ R GGPLLPK                           ++   + + P   DP+TLPW
Sbjct: 484  LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P ++++L+TLR L
Sbjct: 542  VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSL 601

Query: 1261 NRFPTPWCPDRAR 1299
            NR+PTPW PDRAR
Sbjct: 602  NRYPTPWNPDRAR 614


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  617 bits (1590), Expect = e-174
 Identities = 306/434 (70%), Positives = 339/434 (78%), Gaps = 1/434 (0%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            L+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTAP   T+TAQRLETKGA
Sbjct: 189  LHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PV
Sbjct: 369  PLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T  +F+ F           +  +LE  AE    H SL++    LS  QL ALH+
Sbjct: 429  NPDDAETTHSFQAF-----CQAAAAVETTLEQQAETPDEHQSLRLDCPTLSEHQLWALHK 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQ-GDHTDEAPVNSDPATLP 1077
            LG+ R GGPLLP+                    T A+   +Q        P   DP TLP
Sbjct: 484  LGNARCGGPLLPQ---RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLP 540

Query: 1078 WVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRG 1257
            WVAWLPKLNALGFEALEIQ DPSTG +IMPI D ++LP+A  P HW  P + ++++TLR 
Sbjct: 541  WVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRS 600

Query: 1258 LNRFPTPWCPDRAR 1299
            LNR+PTPW PDR+R
Sbjct: 601  LNRYPTPWNPDRSR 614


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  617 bits (1590), Expect = e-174
 Identities = 306/433 (70%), Positives = 337/433 (77%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F           +  +L   +E    H SL +    L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG+ R GGPLLPK                           ++   + + P   DP+TLPW
Sbjct: 484  LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLR L
Sbjct: 542  VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSL 601

Query: 1261 NRFPTPWCPDRAR 1299
            NR+PTPW PDRAR
Sbjct: 602  NRYPTPWNPDRAR 614


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  617 bits (1590), Expect = e-174
 Identities = 306/433 (70%), Positives = 337/433 (77%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189  LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369  PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NPDDA+T ++F+ F           +  +L   +E    H SL +    L   QL ALHE
Sbjct: 429  NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHE 483

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG+ R GGPLLPK                           ++   + + P   DP+TLPW
Sbjct: 484  LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLR L
Sbjct: 542  VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSL 601

Query: 1261 NRFPTPWCPDRAR 1299
            NR+PTPW PDRAR
Sbjct: 602  NRYPTPWNPDRAR 614


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  580 bits (1494), Expect = e-163
 Identities = 289/433 (66%), Positives = 322/433 (74%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAP  PT+TAQRLETKGA
Sbjct: 188  LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGA 247

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KE
Sbjct: 248  NHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKE 307

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
            A+      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV    L  +   
Sbjct: 308  AQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTP 366

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
                 I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PV
Sbjct: 367  APPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPV 426

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            NP+DAD    F++F           +   LE SAE+   HT LKV  + LS  QL A+H 
Sbjct: 427  NPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHA 486

Query: 901  LGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPATLPW 1080
            LG +R GGPLLP++T                  +QAS + +     D  P   +P TLPW
Sbjct: 487  LGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPW 546

Query: 1081 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 1260
            VAWLPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+ATLP HW    L ++L+TLR L
Sbjct: 547  VAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSL 606

Query: 1261 NRFPTPWCPDRAR 1299
            NRFPTPW PDR R
Sbjct: 607  NRFPTPWSPDRTR 619


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  446 bits (1147), Expect = e-122
 Identities = 239/437 (54%), Positives = 283/437 (64%), Gaps = 4/437 (0%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 180
            LYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + +  T+TAQRLETKGA
Sbjct: 189  LYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETKGA 247

Query: 181  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 360
            NHLFIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSVKE
Sbjct: 248  NHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKE 307

Query: 361  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 540
             +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLR
Sbjct: 308  CRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLR 367

Query: 541  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 720
            P R + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPGF +P  +P PV
Sbjct: 368  PARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPV 427

Query: 721  NPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 900
            N  DA T  A                            ++ SL +   +LS +QL ALH 
Sbjct: 428  NEVDALTTAA---------------------------CANQSLPLD--NLSEDQLEALHV 458

Query: 901  LGSTRLGG---PLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEAPVNSDPAT 1071
            LGS R  G   P  PK                    T  + ++    +        DP T
Sbjct: 459  LGSLRTDGESLPSPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPLPDPDT 518

Query: 1072 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLTT 1248
            LPW AWLP L ALGFEA EIQTDP     IMPI D++ LP  T  E+ +      KV+ T
Sbjct: 519  LPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVIT 578

Query: 1249 LRGLNRFPTPWCPDRAR 1299
            L+ LNR PTPW PDR R
Sbjct: 579  LKQLNRSPTPWTPDRLR 595


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  243 bits (621), Expect = 1e-61
 Identities = 120/232 (51%), Positives = 153/232 (65%), Gaps = 12/232 (5%)
 Frame = +1

Query: 1   LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--APNQP---------- 144
           LYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG +     N P          
Sbjct: 189 LYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKW 248

Query: 145 TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIM 324
            +TAQR+ETKGANHLF+FQRG   TP+ R+  T   Y+TVP +FLP+K+N R P+ KTI 
Sbjct: 249 AVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIA 308

Query: 325 MQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED 504
            QMF YIKSVK+  ERDI++K RQLI T ELQ Y P E+ LL NYF   + L S    E+
Sbjct: 309 QQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEE 368

Query: 505 VLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 660
           VL+G+L ++L RP++S +   +    G+P F +L++AL W  + L  PVR V
Sbjct: 369 VLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420



 Score = 75.9 bits (185), Expect = 4e-11
 Identities = 38/82 (46%), Positives = 47/82 (57%)
 Frame = +1

Query: 1054 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 1233
            N+  A LPW  W+PKLNALGFEA E Q  P T  +IMPI D+    K  +P H       
Sbjct: 612  NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667

Query: 1234 KVLTTLRGLNRFPTPWCPDRAR 1299
            ++L  L+ L+R PT W PD  R
Sbjct: 668  ELLDLLKALSRMPTLWTPDTLR 689


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  241 bits (615), Expect = 5e-61
 Identities = 119/229 (51%), Positives = 158/229 (68%), Gaps = 6/229 (2%)
 Frame = +1

Query: 1   LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQP----TITAQRLE 168
           L+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG     ++      +T+Q LE
Sbjct: 191 LHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILE 250

Query: 169 TKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIK 348
           TKGANHLFIFQRG +LTPE R F+T   YVT+P IFLP+++N R PI KT   Q+F Y+K
Sbjct: 251 TKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVK 310

Query: 349 SVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQ 528
           SVK   ERDIWAK RQL+ T ELQ Y P E+TLLVNYF   A L S TCF++VLSG + +
Sbjct: 311 SVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFK 370

Query: 529 RLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 669
           +L +P  +  +IQ+   F  G   F +L++AL+W  +TL +P +T + R
Sbjct: 371 KLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417



 Score = 62.0 bits (149), Expect = 5e-07
 Identities = 35/76 (46%), Positives = 46/76 (60%)
 Frame = +1

Query: 1072 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 1251
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPE----VVYKTL 760

Query: 1252 RGLNRFPTPWCPDRAR 1299
             GL R PTP+ P+  R
Sbjct: 761  DGLARAPTPYSPNPIR 776


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  236 bits (601), Expect = 2e-59
 Identities = 117/222 (52%), Positives = 151/222 (68%), Gaps = 1/222 (0%)
 Frame = +1

Query: 1   LYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKG 177
           L+P +YTL+Y  E  F+Y PGGH GA Y H + QL+WL VG +   NQ  ITAQR+E+K 
Sbjct: 187 LHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESKA 245

Query: 178 ANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVK 357
           ANHLF+FQRGN  TP  R F T + YVT+P IFLP+K+N R PI KT++MQ+F Y+K V 
Sbjct: 246 ANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVA 305

Query: 358 EAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 537
           +  ERDI+AK RQLI T +LQ +  SE+  +VNYF F A  DS TCF D+LSG+L ++L 
Sbjct: 306 KVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLF 365

Query: 538 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 663
           +PL + +     F  G P F KL+KAL WQ IT+   V  +N
Sbjct: 366 QPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407


>gb|ABO41877.1| RNA dependent RNA polymerase [Cymbidium mosaic virus]
          Length = 1417

 Score =  229 bits (583), Expect = 2e-57
 Identities = 150/435 (34%), Positives = 208/435 (47%), Gaps = 10/435 (2%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQP-------TITAQ 159
            LYP IYTL Y EDGF YIPG HAG +YFH+Y  L+WLT+G L   N P       T+T Q
Sbjct: 187  LYPAIYTLNYHEDGFEYIPGNHAGGAYFHEYSTLQWLTLGKLII-NDPLKVKKPLTLTVQ 245

Query: 160  RLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFF 339
             +E+ GANHL +  RG+  TP+ RTF    H V +P IF P+  N   P+SK   MQ++ 
Sbjct: 246  LIESLGANHLLLITRGDLRTPKLRTFAKDTH-VLLPQIFHPKGMNANKPLSKRRAMQLWL 304

Query: 340  YIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGN 519
            Y KSVKE  ERD++AK RQLI T EL  + P E+T LVNY  F + L S + ++D+LS N
Sbjct: 305  YAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTHLVNYLLFISHLSSVSSYDDILSSN 364

Query: 520  LIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNP 699
            + Q    P+++ I+ + Q F G   F +L+KALDWQ  +   PV T++TR          
Sbjct: 365  IFQHFTIPIKNKIRELAQLFTGADQFNQLLKALDWQTFSYSMPVETIHTRAANYQ-VAKT 423

Query: 700  FTKPHPVNPDDADTMR-AFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLST 876
                  +  D+ D ++   R+              D     AE+    T       DL+ 
Sbjct: 424  LRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQDPSSSEAEDSEDDTD----SIDLNL 479

Query: 877  EQLRALHELGSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQGDHTDEA--P 1050
                 L         G  +   T                  + AS ++  G  T EA  P
Sbjct: 480  PPTHGLPSNFDPLDKGKSIIVDTDSPSTSAAPAVTFAAGINSSASTNILFGSFTPEAEGP 539

Query: 1051 VNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGL 1230
                   LPW  W+P L   GF+       P TGE+I PI +++ +P    P+   +   
Sbjct: 540  PPPPMEKLPWDLWIPLLEQHGFKGKSKLYKP-TGELICPITEIKTVPHCPFPDKVPD--- 595

Query: 1231 SKVLTTLRGLNRFPT 1275
               +  L+ + RF T
Sbjct: 596  -GCVLALKSIKRFAT 609


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
           replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  227 bits (579), Expect = 7e-57
 Identities = 116/252 (46%), Positives = 156/252 (61%), Gaps = 6/252 (2%)
 Frame = +1

Query: 1   LYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQR 162
           +YP IYTL Y          F Y PGGH GA Y H+  QL+WL+VG LT     TITAQ+
Sbjct: 189 IYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQLDWLSVGRLT-DGVTTITAQK 247

Query: 163 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 342
           +ETK ANHLFIFQRG+ +TP  R F+T   +VT+P IFLPEK+N R PI KT++MQMF Y
Sbjct: 248 IETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFLPEKFNARQPIRKTLVMQMFLY 307

Query: 343 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 522
           +K VK+  ERDIWAK+RQLI T++LQ +   E+  L NYF F     S  CF+DVL G  
Sbjct: 308 VKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNYFVFVGKQSSINCFDDVLKGGF 367

Query: 523 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPF 702
           + R  +P+++  + V Q   G   FV+L++AL+W  + L+   +  + + R   GF +  
Sbjct: 368 LTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDLKLDTKNYDFKRREGNGFLS-- 425

Query: 703 TKPHPVNPDDAD 738
                  PDD++
Sbjct: 426 LSKVAAGPDDSE 437


>gb|AAB71853.1| RNA replicase [Cymbidium mosaic virus]
          Length = 1417

 Score =  227 bits (579), Expect = 7e-57
 Identities = 150/445 (33%), Positives = 217/445 (48%), Gaps = 20/445 (4%)
 Frame = +1

Query: 1    LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPN-----QP-TITAQR 162
            L+P IYTL Y +DGF YIPG HAG +YFH+Y  L+WLT+G L   +     +P T+T Q 
Sbjct: 187  LHPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQWLTLGKLIIDDPLKVKKPLTLTVQL 246

Query: 163  LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 342
            +E+ GANHL +  RG+  TP+ RTF    H V +P IF P+  N   P+SK   MQ++ Y
Sbjct: 247  IESLGANHLLLITRGDLRTPKLRTFARDTH-VLLPQIFHPKGMNANKPLSKRRAMQLWLY 305

Query: 343  IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 522
             KSVKE  ERD++AK RQLI T EL  + P E+T LVNY  F + L S + ++D+LS N+
Sbjct: 306  AKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTHLVNYLLFISHLSSVSSYDDILSSNI 365

Query: 523  IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPF 702
             Q    P+++ I+ + Q F G   F +L+KALDWQ  +   PV T++TR           
Sbjct: 366  FQHFTIPIKNKIRELAQLFTGADQFNQLLKALDWQTFSYSMPVETIHTR----------- 414

Query: 703  TKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEG----SAENLASHTSLKVGHADL 870
                  N   A T+R  R+            +    +G       +    +S +   ++ 
Sbjct: 415  ----AANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQDPSSPEAEDSED 470

Query: 871  STE----QLRALHEL----GSTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTQASASLNQ 1026
             T+     L   HEL     S   G  ++   T                  + AS +++ 
Sbjct: 471  DTDSVDFNLSPTHELPPNFDSLHKGKSIIFD-TDNPSTSTAPAVTFAVGINSSASTNISF 529

Query: 1027 GDHTDEAPVNSDP--ATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKAT 1200
            G  T EA     P    LPW  W+P L   GF+       P TGE+I PI +++ +P   
Sbjct: 530  GSFTPEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKP-TGELICPITEIKTVPHCP 588

Query: 1201 LPEHWNEPGLSKVLTTLRGLNRFPT 1275
             P+   +      +  L+ + RF T
Sbjct: 589  FPDKVPD----GCVLALKSIKRFAT 609


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  227 bits (578), Expect = 9e-57
 Identities = 116/247 (46%), Positives = 157/247 (63%), Gaps = 10/247 (4%)
 Frame = +1

Query: 1   LYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQ 159
           LYP +Y+L+Y +         F Y PGGH GA Y H+  Q++WL  GH+    +  ITAQ
Sbjct: 189 LYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLRFGHII-DGKVCITAQ 247

Query: 160 RLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFF 339
           +LETK ANHLFI++RG Y TPE R F T   YVT+P IFLP ++N R PI KT++MQ+F 
Sbjct: 248 KLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKTLVMQLFM 307

Query: 340 YIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGN 519
           Y+K+V  AKERDIWAK RQLI T++LQ Y P+EI  LVNYF F A   + T F+ +L G+
Sbjct: 308 YVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSFDSMLDGS 367

Query: 520 LIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLE---FPVRTVNTRLRGPPGF 690
           +I+++ RP+ +  +   Q   G   F +L++AL W  I L     PV+T + R  G    
Sbjct: 368 IIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKTHDWRRMGVADS 427

Query: 691 HNPFTKP 711
           ++PFT P
Sbjct: 428 NDPFTYP 434


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  224 bits (572), Expect = 5e-56
 Identities = 109/223 (48%), Positives = 149/223 (66%), Gaps = 4/223 (1%)
 Frame = +1

Query: 1   LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPT----ITAQRLE 168
           ++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LE
Sbjct: 191 IHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILE 250

Query: 169 TKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIK 348
           TKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIK
Sbjct: 251 TKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIK 310

Query: 349 SVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQ 528
           SVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G +++
Sbjct: 311 SVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLK 370

Query: 529 RLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 657
           +L +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 371 KLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score = 57.8 bits (138), Expect = 1e-05
 Identities = 35/80 (43%), Positives = 46/80 (57%)
 Frame = +1

Query: 1060 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 1239
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEK-VDPSLLKM 753

Query: 1240 LTTLRGLNRFPTPWCPDRAR 1299
            L       R PTP+ P   R
Sbjct: 754  LDNQA---RAPTPFSPSPIR 770


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  224 bits (572), Expect = 5e-56
 Identities = 109/223 (48%), Positives = 149/223 (66%), Gaps = 4/223 (1%)
 Frame = +1

Query: 1   LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPT----ITAQRLE 168
           ++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LE
Sbjct: 191 IHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILE 250

Query: 169 TKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIK 348
           TKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIK
Sbjct: 251 TKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIK 310

Query: 349 SVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQ 528
           SVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G +++
Sbjct: 311 SVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLK 370

Query: 529 RLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 657
           +L +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 371 KLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 36/80 (45%), Positives = 46/80 (57%)
 Frame = +1

Query: 1060 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 1239
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 1240 LTTLRGLNRFPTPWCPDRAR 1299
            L       R PTP+ P   R
Sbjct: 754  LDDQA---RAPTPFSPSPIR 770