BLASTX nr result
ID: Atropa21_contig00009878
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00009878 (980 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 65 2e-16 gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 55 4e-14 ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264... 59 7e-13 ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 81 7e-13 gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 56 8e-13 gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 61 2e-12 gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 62 5e-12 gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 63 7e-12 gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 60 7e-12 emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 54 8e-12 emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 77 1e-11 dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 54 2e-11 ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 57 2e-11 dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 57 3e-11 emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis ... 48 4e-11 gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 59 7e-11 gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 55 2e-10 gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 52 3e-10 gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 56 4e-10 ref|XP_002331075.1| predicted protein [Populus trichocarpa] 59 2e-09 >dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Score = 65.5 bits (158), Expect(3) = 2e-16 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L+ +L KS +Y G S + +++ + F+ G + RY+G+PL TKRL C PLL Sbjct: 732 SGLRISLEKSTVYLAGL-SATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLL 790 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 +++ RI SWT++ LSYAG + Sbjct: 791 EQVRKRIGSWTSRFLSYAGRLN 812 Score = 42.4 bits (98), Expect(3) = 2e-16 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576 LS +L + +HF YHPK + + L FADDL++ S G + S+ ++ F+ Sbjct: 674 LSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFD 726 Score = 24.6 bits (52), Expect(3) = 2e-16 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +1 Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 +LW+ + K I +CKPK GGL + Sbjct: 846 FLWSGTEMNSNKAKISWHMVCKPKDEGGLGL 876 >gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] Length = 872 Score = 55.5 bits (132), Expect(3) = 4e-14 Identities = 30/82 (36%), Positives = 45/82 (54%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L+ +L KS +Y G +I + F G + RY+G+PL TKRL PLL Sbjct: 379 SGLRISLEKSTLYMAGVSPIIK-QEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLL 437 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 +++ RI +WT + S+AG F+ Sbjct: 438 EQIKKRIATWTFRFFSFAGRFN 459 Score = 43.1 bits (100), Expect(3) = 4e-14 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNNSC 585 LS +L + V+ F +HPK +L + L FADDL++ S G S+ +L F+ C Sbjct: 321 LSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFC 376 Score = 26.2 bits (56), Expect(3) = 4e-14 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 +LW+ + K I D +CKPK GGL + Sbjct: 493 FLWSGSEMSSHKAKISWDIVCKPKAEGGLGL 523 >ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264629 [Solanum lycopersicum] Length = 261 Score = 59.3 bits (142), Expect(2) = 7e-13 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%) Frame = +1 Query: 397 LFA-KVKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573 LFA +KYLS LLK + + K F+YHP+ KL I L FADDLL+F+RG L SV A+ + F Sbjct: 149 LFAIAMKYLSRLLKGLKEDKQFRYHPRCSKLDITHLCFADDLLMFARGDLKSVKAIQLCF 208 Query: 574 N 576 + Sbjct: 209 S 209 Score = 42.0 bits (97), Expect(2) = 7e-13 Identities = 22/46 (47%), Positives = 32/46 (69%) Frame = +2 Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVP 721 ASRL+ NL+KS IY GG + +QI+QQL + ++ F+Y+GVP Sbjct: 214 ASRLQANLSKSSIYCGGVQQEVK-NQIVQQLGYNMEELPFKYLGVP 258 >ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum lycopersicum] Length = 717 Score = 80.9 bits (198), Expect = 7e-13 Identities = 42/80 (52%), Positives = 57/80 (71%) Frame = +2 Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPL 763 AS L+ NLNKS IY GG + QI+QQL +T ++ F+Y+GVPLS+K+L +Q PL Sbjct: 524 ASGLQANLNKSSIYCGGVQM-EVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPL 582 Query: 764 LDKMLGRITSWTTKLLSYAG 823 ++K++ RI SWT K LSYAG Sbjct: 583 IEKVMARINSWTAKKLSYAG 602 Score = 69.7 bits (169), Expect = 2e-09 Identities = 71/226 (31%), Positives = 104/226 (46%), Gaps = 32/226 (14%) Frame = +1 Query: 397 LFA-KVKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573 LFA ++YLS LLK + + K FKYHPK KL + L FADDLLLFSRG L S+ A+ F Sbjct: 459 LFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCF 518 Query: 574 -------------NNSCI*AQGKSEQKLHIFWRIKILQQLGSN------------LTAVK 678 N S I G + + R +I+QQLG L++ K Sbjct: 519 TEFSQASGLQANLNKSSIYCGG-----VQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKK 573 Query: 679 IHKR*YAF*VYWGTT*HKEVVLLT------MSAFIR*NAGKNHFMDNQATFVCRRIQLIK 840 ++ + W K + + +S R K QA + ++ +I Sbjct: 574 LNT------IQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWA--QLFIIP 625 Query: 841 SVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNIMD 978 + + +I + R YLW+ TKK LI D++C PK GGL +++ Sbjct: 626 AKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPKYEGGLGLIN 671 >gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana] Length = 629 Score = 55.8 bits (133), Expect(3) = 8e-13 Identities = 28/82 (34%), Positives = 48/82 (58%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L+ N+ K+ +Y G +N + ++ + F G + RY+G+PL TKRL PL Sbjct: 137 SGLQINMEKTTLYTAGVSDHNRY-MMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLF 195 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 +++ RI +WT++ LS+AG + Sbjct: 196 EQIRNRIGTWTSRYLSFAGRLN 217 Score = 35.8 bits (81), Expect(3) = 8e-13 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = +1 Query: 409 VKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576 ++ LS +L + K F +HPK L + L FADDL++ + G + SV ++ N Sbjct: 76 MEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMN 131 Score = 28.9 bits (63), Expect(3) = 8e-13 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +1 Query: 835 IKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 + S + I SI +LW+ +K + D +CKPK GGL + Sbjct: 236 LPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGL 281 >gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana] gi|20197043|gb|AAM14892.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 1412 Score = 61.2 bits (147), Expect(2) = 2e-12 Identities = 33/79 (41%), Positives = 46/79 (58%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L +L KS ++ S S + IL + F G + RY+G+PL TKR+ C PLL Sbjct: 987 SGLNISLEKSTLFMA-SISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLL 1045 Query: 767 DKMLGRITSWTTKLLSYAG 823 +K+ RI+SW + LSYAG Sbjct: 1046 EKIRSRISSWKNRFLSYAG 1064 Score = 38.1 bits (87), Expect(2) = 2e-12 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579 LS +L + K F YHP+ + + L FADD+++FS G S+ VL F + Sbjct: 929 LSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKD 982 >gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana] Length = 928 Score = 62.0 bits (149), Expect(2) = 5e-12 Identities = 29/82 (35%), Positives = 53/82 (64%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S LK ++ KS +Y G ++ + + +I+Q+ F G + RY+G+PL +KRL C PL+ Sbjct: 620 SGLKISMEKSTMYLAGVQA-SVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLI 678 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 +++ +I +WT++ LS+AG + Sbjct: 679 EQLRKKIEAWTSRFLSFAGRLN 700 Score = 36.2 bits (82), Expect(2) = 5e-12 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVL 564 LS +L + + F YHPK + + L FADDL++ S G + S+ ++ Sbjct: 562 LSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIV 610 >gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] Length = 740 Score = 62.8 bits (151), Expect(2) = 7e-12 Identities = 33/82 (40%), Positives = 46/82 (56%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L +L KS +Y G N + IL F G + RY+G+PL TK++ PLL Sbjct: 305 SGLHISLEKSTLYLAGVSELNR-NNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLL 363 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 DK+ +I+SWT + LSYAG + Sbjct: 364 DKVRSKISSWTARSLSYAGRLA 385 Score = 35.0 bits (79), Expect(2) = 7e-12 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +1 Query: 451 KHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573 ++ YHPK KL + L FADDL++F G SV V+ F Sbjct: 258 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIF 298 >gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] Length = 653 Score = 59.7 bits (143), Expect(2) = 7e-12 Identities = 32/82 (39%), Positives = 48/82 (58%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S LK ++ KS IY G + + +I + +F G + RY+G+PL TKRL PLL Sbjct: 259 SGLKISMEKSTIYLAGVTE-DVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLL 317 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 + + +I +WTT+ LSYAG + Sbjct: 318 EHIKKKIGTWTTRYLSYAGRLN 339 Score = 38.1 bits (87), Expect(2) = 7e-12 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576 LS LL + K F YH + +L + L FADDL++ S G + S+ ++ F+ Sbjct: 201 LSKLLDQAASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFD 253 >emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana] gi|7267919|emb|CAB78261.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 662 Score = 53.5 bits (127), Expect(3) = 8e-12 Identities = 31/82 (37%), Positives = 45/82 (54%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S LK ++ K+ IYF G S + + Q F G + RY+ +PL TKR PLL Sbjct: 250 SGLKISMAKTTIYFAGI-SKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLL 308 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 +++ RI +WT + LSYAG + Sbjct: 309 EQIKRRIGTWTARFLSYAGRLN 330 Score = 38.1 bits (87), Expect(3) = 8e-12 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579 LS L R ++ F YHPK L + L FADD+++ + G L S+ ++ F++ Sbjct: 192 LSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDS 245 Score = 25.4 bits (54), Expect(3) = 8e-12 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 850 VSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 V I + +LW+ T K I + +C+PK GGL + Sbjct: 354 VREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGL 394 >emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1114 Score = 77.0 bits (188), Expect = 1e-11 Identities = 38/90 (42%), Positives = 56/90 (62%) Frame = +2 Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPL 763 AS L+ ++ KSCIYFGG + +Q+ +++ G + FRY+GVPL++K+L QC+PL Sbjct: 719 ASGLQASIEKSCIYFGGV-CHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPL 777 Query: 764 LDKMLGRITSWTTKLLSYAGEFS**KVSMY 853 +DK+ R W LLSYAG K +Y Sbjct: 778 IDKITTRAQGWVAHLLSYAGRLQLVKTILY 807 >dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1115 Score = 53.9 bits (128), Expect(3) = 2e-11 Identities = 28/82 (34%), Positives = 46/82 (56%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S LK N+ K+ +Y G +N ++ + F + RY+G+PL TKRL PL Sbjct: 649 SGLKINMEKTTLYTAGVSDHNR-HMMISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLF 707 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 +++ RI +WT++ LS+AG + Sbjct: 708 EQIRNRIGTWTSRYLSFAGRLN 729 Score = 37.0 bits (84), Expect(3) = 2e-11 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = +1 Query: 409 VKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576 ++ LS +L + K F +HPK L + L FADDL++ + G + SV ++ N Sbjct: 588 MEVLSKMLDQAAGAKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMN 643 Score = 25.0 bits (53), Expect(3) = 2e-11 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +1 Query: 835 IKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAG 960 + S + I SI +LW+ +K + D +CKPK G Sbjct: 748 LPSACLKEINSICSAFLWSGPELNRRKAKVSWDDICKPKQGG 789 >ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine max] Length = 239 Score = 57.0 bits (136), Expect(3) = 2e-11 Identities = 34/80 (42%), Positives = 42/80 (52%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L N +KS IY G + + I Q F G FRY+GVPL + RL PLL Sbjct: 55 SGLSINSDKSAIYSAGIRPHEL-SHIQQLTGFNLGGFPFRYLGVPLLSSRLNVCHYAPLL 113 Query: 767 DKMLGRITSWTTKLLSYAGE 826 K+ G I W+ K LSYAG+ Sbjct: 114 SKITGLIQGWSRKSLSYAGK 133 Score = 36.2 bits (82), Expect(3) = 2e-11 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 454 HFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNNSC 585 +FK+HP +++ L FADD++ SRG + SV + + C Sbjct: 9 NFKFHPNCAGIQLFHLAFADDIMFLSRGDIPSVSTMFAKLQHFC 52 Score = 22.7 bits (47), Expect(3) = 2e-11 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +1 Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNIMD 978 +LW K+LI +C PK GGL + + Sbjct: 169 FLWGKADIGKNKSLIAWSVVCSPKKEGGLGLFN 201 >dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 489 Score = 57.4 bits (137), Expect(2) = 3e-11 Identities = 29/82 (35%), Positives = 48/82 (58%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L+ ++ KS +YF G S+ S +++ F G + RY+G+PL TK+L PL+ Sbjct: 114 SGLRISMEKSTVYFAGL-SHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLI 172 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 + + +I SW+ + LSYAG + Sbjct: 173 EHIKKKIGSWSARFLSYAGRLN 194 Score = 38.1 bits (87), Expect(2) = 3e-11 Identities = 18/52 (34%), Positives = 30/52 (57%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573 LS LL + + F YHP+ ++ + L FADDL++ S G + S+ ++ F Sbjct: 56 LSKLLDKATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVF 107 >emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis thaliana] gi|7268153|emb|CAB78489.1| reverse transcriptase like protein [Arabidopsis thaliana] Length = 318 Score = 47.8 bits (112), Expect(3) = 4e-11 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S LK ++ K+ IY G S + +Q F G + RY+G+PL TKRL PLL Sbjct: 168 SCLKISMEKTTIYLAGI-SDTVRQEFEEQFHFEVGCLPVRYLGLPLVTKRLTSQDYNPLL 226 Query: 767 DKMLGRITSWTTKLLSY 817 +++ RI +WT ++ ++ Sbjct: 227 EQIKRRIGTWTARICNF 243 Score = 38.1 bits (87), Expect(3) = 4e-11 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579 LS L R ++ F YHPK L + L FADD+++ + G L S+ ++ F++ Sbjct: 110 LSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDS 163 Score = 28.9 bits (63), Expect(3) = 4e-11 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 +LW+ TKK I D +C+PK GGL + Sbjct: 265 FLWSGPELSTKKAKIAWDTICRPKQEGGLGL 295 >gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1277 Score = 58.9 bits (141), Expect(2) = 7e-11 Identities = 32/82 (39%), Positives = 44/82 (53%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L +L KS +Y N + IL F G + RY+G PL TK++ PLL Sbjct: 874 SGLHISLEKSTLYLAEVSELNR-NNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLL 932 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 DK+ +I+SWT + LSYAG + Sbjct: 933 DKVRSKISSWTARSLSYAGRLA 954 Score = 35.4 bits (80), Expect(2) = 7e-11 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 451 KHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579 ++ YHPK KL + L FADDL++F G SV V+ F + Sbjct: 827 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKD 869 >gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana] Length = 504 Score = 55.5 bits (132), Expect(2) = 2e-10 Identities = 27/82 (32%), Positives = 46/82 (56%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S LK ++ KS +Y G S+ + +++ + F G + RY+G+PL TK+ PL+ Sbjct: 62 SDLKISMEKSTVYLAGL-SHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLI 120 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 D + +I SW+ + LSY G + Sbjct: 121 DHIKQKICSWSARFLSYTGRLN 142 Score = 37.7 bits (86), Expect(2) = 2e-10 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576 LS LL + + F YHP+ ++ + L FADDL++ S G + S+ ++ F+ Sbjct: 4 LSKLLDKAAGQRKFGYHPRCKQIGLTHLSFADDLMVLSDGKVRSIEGIVDVFD 56 >gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13) [Arabidopsis thaliana] Length = 1164 Score = 51.6 bits (122), Expect(3) = 3e-10 Identities = 27/79 (34%), Positives = 42/79 (53%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L N NK+ +Y G S + F G + RY+G+PL +++L + PL+ Sbjct: 623 SGLLMNTNKTQLYHAGLSQSES--DSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLI 680 Query: 767 DKMLGRITSWTTKLLSYAG 823 +K+ R SW +LLS+AG Sbjct: 681 EKITARFNSWVVRLLSFAG 699 Score = 30.4 bits (67), Expect(3) = 3e-10 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 454 HFKYHPK*PKLKIIQLGFADDLLLFSRG 537 + YHPK +L+I L FADD+++F G Sbjct: 577 YIAYHPKTSQLEISHLMFADDVMIFFDG 604 Score = 29.3 bits (64), Expect(3) = 3e-10 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +1 Query: 850 VSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 + I S+ +LW+ IDK + Q+C PK GG+ + Sbjct: 726 IKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGL 766 >gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1529 Score = 56.2 bits (134), Expect(2) = 4e-10 Identities = 31/82 (37%), Positives = 46/82 (56%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L+ +L KS IY G S + Q L F G + RY+G+PL TK++ PL+ Sbjct: 1029 SGLQISLEKSTIYLAGV-SASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLI 1087 Query: 767 DKMLGRITSWTTKLLSYAGEFS 832 + + +I+SWT + LSYAG + Sbjct: 1088 EAVKTKISSWTARSLSYAGRLA 1109 Score = 35.4 bits (80), Expect(2) = 4e-10 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573 LS ++ ++ YHPK K+ + L FADDL++F G+ S+ V+ F Sbjct: 971 LSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022 >ref|XP_002331075.1| predicted protein [Populus trichocarpa] Length = 517 Score = 59.3 bits (142), Expect(2) = 2e-09 Identities = 30/79 (37%), Positives = 48/79 (60%) Frame = +2 Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766 S L N NKS I+ G + +QI+ L F +G++ +Y+GVPL + RL + C+ L+ Sbjct: 19 SGLYPNPNKSDIFLSGVLNAER-EQIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLV 77 Query: 767 DKMLGRITSWTTKLLSYAG 823 D++ ++ WT + LSYAG Sbjct: 78 DRITSKVRHWTCRTLSYAG 96 Score = 30.0 bits (66), Expect(2) = 2e-09 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +1 Query: 829 QLIKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972 Q+IK+V I++ +LW+ +T + DQ+C PK GGL I Sbjct: 121 QVIKNVE-----QIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGI 163