BLASTX nr result

ID: Atropa21_contig00009878 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00009878
         (980 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    65   2e-16
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                55   4e-14
ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264...    59   7e-13
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268...    81   7e-13
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    56   8e-13
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    61   2e-12
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    62   5e-12
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 63   7e-12
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              60   7e-12
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    54   8e-12
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    77   1e-11
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    54   2e-11
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A...    57   2e-11
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    57   3e-11
emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis ...    48   4e-11
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    59   7e-11
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    55   2e-10
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    52   3e-10
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    56   4e-10
ref|XP_002331075.1| predicted protein [Populus trichocarpa]            59   2e-09

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 65.5 bits (158), Expect(3) = 2e-16
 Identities = 33/82 (40%), Positives = 51/82 (62%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L+ +L KS +Y  G  S  + +++  +  F+ G +  RY+G+PL TKRL    C PLL
Sbjct: 732 SGLRISLEKSTVYLAGL-SATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLL 790

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           +++  RI SWT++ LSYAG  +
Sbjct: 791 EQVRKRIGSWTSRFLSYAGRLN 812



 Score = 42.4 bits (98), Expect(3) = 2e-16
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
           LS +L +    +HF YHPK   + +  L FADDL++ S G + S+  ++  F+
Sbjct: 674 LSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFD 726



 Score = 24.6 bits (52), Expect(3) = 2e-16
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           +LW+     + K  I    +CKPK  GGL +
Sbjct: 846 FLWSGTEMNSNKAKISWHMVCKPKDEGGLGL 876


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 55.5 bits (132), Expect(3) = 4e-14
 Identities = 30/82 (36%), Positives = 45/82 (54%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L+ +L KS +Y  G        +I  +  F  G +  RY+G+PL TKRL      PLL
Sbjct: 379 SGLRISLEKSTLYMAGVSPIIK-QEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLL 437

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           +++  RI +WT +  S+AG F+
Sbjct: 438 EQIKKRIATWTFRFFSFAGRFN 459



 Score = 43.1 bits (100), Expect(3) = 4e-14
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNNSC 585
           LS +L +   V+ F +HPK  +L +  L FADDL++ S G   S+  +L  F+  C
Sbjct: 321 LSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFC 376



 Score = 26.2 bits (56), Expect(3) = 4e-14
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           +LW+     + K  I  D +CKPK  GGL +
Sbjct: 493 FLWSGSEMSSHKAKISWDIVCKPKAEGGLGL 523


>ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264629 [Solanum
           lycopersicum]
          Length = 261

 Score = 59.3 bits (142), Expect(2) = 7e-13
 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +1

Query: 397 LFA-KVKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
           LFA  +KYLS LLK + + K F+YHP+  KL I  L FADDLL+F+RG L SV A+ + F
Sbjct: 149 LFAIAMKYLSRLLKGLKEDKQFRYHPRCSKLDITHLCFADDLLMFARGDLKSVKAIQLCF 208

Query: 574 N 576
           +
Sbjct: 209 S 209



 Score = 42.0 bits (97), Expect(2) = 7e-13
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +2

Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVP 721
           ASRL+ NL+KS IY GG +     +QI+QQL +   ++ F+Y+GVP
Sbjct: 214 ASRLQANLSKSSIYCGGVQQEVK-NQIVQQLGYNMEELPFKYLGVP 258


>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
           lycopersicum]
          Length = 717

 Score = 80.9 bits (198), Expect = 7e-13
 Identities = 42/80 (52%), Positives = 57/80 (71%)
 Frame = +2

Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPL 763
           AS L+ NLNKS IY GG +      QI+QQL +T  ++ F+Y+GVPLS+K+L  +Q  PL
Sbjct: 524 ASGLQANLNKSSIYCGGVQM-EVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPL 582

Query: 764 LDKMLGRITSWTTKLLSYAG 823
           ++K++ RI SWT K LSYAG
Sbjct: 583 IEKVMARINSWTAKKLSYAG 602



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 71/226 (31%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
 Frame = +1

Query: 397  LFA-KVKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
            LFA  ++YLS LLK + + K FKYHPK  KL +  L FADDLLLFSRG L S+ A+   F
Sbjct: 459  LFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCF 518

Query: 574  -------------NNSCI*AQGKSEQKLHIFWRIKILQQLGSN------------LTAVK 678
                         N S I   G     + +  R +I+QQLG              L++ K
Sbjct: 519  TEFSQASGLQANLNKSSIYCGG-----VQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKK 573

Query: 679  IHKR*YAF*VYWGTT*HKEVVLLT------MSAFIR*NAGKNHFMDNQATFVCRRIQLIK 840
            ++       + W     K +  +       +S   R    K      QA +   ++ +I 
Sbjct: 574  LNT------IQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWA--QLFIIP 625

Query: 841  SVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNIMD 978
            +  + +I  + R YLW+     TKK LI  D++C PK  GGL +++
Sbjct: 626  AKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPKYEGGLGLIN 671


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 55.8 bits (133), Expect(3) = 8e-13
 Identities = 28/82 (34%), Positives = 48/82 (58%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L+ N+ K+ +Y  G   +N +  ++ +  F  G +  RY+G+PL TKRL      PL 
Sbjct: 137 SGLQINMEKTTLYTAGVSDHNRY-MMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLF 195

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           +++  RI +WT++ LS+AG  +
Sbjct: 196 EQIRNRIGTWTSRYLSFAGRLN 217



 Score = 35.8 bits (81), Expect(3) = 8e-13
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 409 VKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
           ++ LS +L +    K F +HPK   L +  L FADDL++ + G + SV  ++   N
Sbjct: 76  MEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMN 131



 Score = 28.9 bits (63), Expect(3) = 8e-13
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 835 IKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           + S  +  I SI   +LW+      +K  +  D +CKPK  GGL +
Sbjct: 236 LPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGL 281


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 61.2 bits (147), Expect(2) = 2e-12
 Identities = 33/79 (41%), Positives = 46/79 (58%)
 Frame = +2

Query: 587  SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
            S L  +L KS ++   S S  +   IL +  F  G +  RY+G+PL TKR+    C PLL
Sbjct: 987  SGLNISLEKSTLFMA-SISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLL 1045

Query: 767  DKMLGRITSWTTKLLSYAG 823
            +K+  RI+SW  + LSYAG
Sbjct: 1046 EKIRSRISSWKNRFLSYAG 1064



 Score = 38.1 bits (87), Expect(2) = 2e-12
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +1

Query: 418  LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
            LS +L +    K F YHP+   + +  L FADD+++FS G   S+  VL  F +
Sbjct: 929  LSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKD 982


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 62.0 bits (149), Expect(2) = 5e-12
 Identities = 29/82 (35%), Positives = 53/82 (64%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S LK ++ KS +Y  G ++ + + +I+Q+  F  G +  RY+G+PL +KRL    C PL+
Sbjct: 620 SGLKISMEKSTMYLAGVQA-SVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLI 678

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           +++  +I +WT++ LS+AG  +
Sbjct: 679 EQLRKKIEAWTSRFLSFAGRLN 700



 Score = 36.2 bits (82), Expect(2) = 5e-12
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVL 564
           LS +L +    + F YHPK   + +  L FADDL++ S G + S+  ++
Sbjct: 562 LSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIV 610


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 62.8 bits (151), Expect(2) = 7e-12
 Identities = 33/82 (40%), Positives = 46/82 (56%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L  +L KS +Y  G    N  + IL    F  G +  RY+G+PL TK++      PLL
Sbjct: 305 SGLHISLEKSTLYLAGVSELNR-NNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLL 363

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           DK+  +I+SWT + LSYAG  +
Sbjct: 364 DKVRSKISSWTARSLSYAGRLA 385



 Score = 35.0 bits (79), Expect(2) = 7e-12
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 451 KHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
           ++  YHPK  KL +  L FADDL++F  G   SV  V+  F
Sbjct: 258 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIF 298


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 59.7 bits (143), Expect(2) = 7e-12
 Identities = 32/82 (39%), Positives = 48/82 (58%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S LK ++ KS IY  G    + + +I  + +F  G +  RY+G+PL TKRL      PLL
Sbjct: 259 SGLKISMEKSTIYLAGVTE-DVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLL 317

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           + +  +I +WTT+ LSYAG  +
Sbjct: 318 EHIKKKIGTWTTRYLSYAGRLN 339



 Score = 38.1 bits (87), Expect(2) = 7e-12
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
           LS LL +    K F YH +  +L +  L FADDL++ S G + S+  ++  F+
Sbjct: 201 LSKLLDQAASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFD 253


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 53.5 bits (127), Expect(3) = 8e-12
 Identities = 31/82 (37%), Positives = 45/82 (54%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S LK ++ K+ IYF G  S +   +   Q  F  G +  RY+ +PL TKR       PLL
Sbjct: 250 SGLKISMAKTTIYFAGI-SKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLL 308

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           +++  RI +WT + LSYAG  +
Sbjct: 309 EQIKRRIGTWTARFLSYAGRLN 330



 Score = 38.1 bits (87), Expect(3) = 8e-12
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
           LS  L R   ++ F YHPK   L +  L FADD+++ + G L S+  ++  F++
Sbjct: 192 LSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDS 245



 Score = 25.4 bits (54), Expect(3) = 8e-12
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 850 VSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           V  I  +   +LW+     T K  I  + +C+PK  GGL +
Sbjct: 354 VREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGL 394


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 38/90 (42%), Positives = 56/90 (62%)
 Frame = +2

Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPL 763
           AS L+ ++ KSCIYFGG   +   +Q+  +++   G + FRY+GVPL++K+L   QC+PL
Sbjct: 719 ASGLQASIEKSCIYFGGV-CHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPL 777

Query: 764 LDKMLGRITSWTTKLLSYAGEFS**KVSMY 853
           +DK+  R   W   LLSYAG     K  +Y
Sbjct: 778 IDKITTRAQGWVAHLLSYAGRLQLVKTILY 807


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 53.9 bits (128), Expect(3) = 2e-11
 Identities = 28/82 (34%), Positives = 46/82 (56%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S LK N+ K+ +Y  G   +N    ++ +  F    +  RY+G+PL TKRL      PL 
Sbjct: 649 SGLKINMEKTTLYTAGVSDHNR-HMMISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLF 707

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           +++  RI +WT++ LS+AG  +
Sbjct: 708 EQIRNRIGTWTSRYLSFAGRLN 729



 Score = 37.0 bits (84), Expect(3) = 2e-11
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 409 VKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
           ++ LS +L +    K F +HPK   L +  L FADDL++ + G + SV  ++   N
Sbjct: 588 MEVLSKMLDQAAGAKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMN 643



 Score = 25.0 bits (53), Expect(3) = 2e-11
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 835 IKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAG 960
           + S  +  I SI   +LW+      +K  +  D +CKPK  G
Sbjct: 748 LPSACLKEINSICSAFLWSGPELNRRKAKVSWDDICKPKQGG 789


>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 239

 Score = 57.0 bits (136), Expect(3) = 2e-11
 Identities = 34/80 (42%), Positives = 42/80 (52%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L  N +KS IY  G + +     I Q   F  G   FRY+GVPL + RL      PLL
Sbjct: 55  SGLSINSDKSAIYSAGIRPHEL-SHIQQLTGFNLGGFPFRYLGVPLLSSRLNVCHYAPLL 113

Query: 767 DKMLGRITSWTTKLLSYAGE 826
            K+ G I  W+ K LSYAG+
Sbjct: 114 SKITGLIQGWSRKSLSYAGK 133



 Score = 36.2 bits (82), Expect(3) = 2e-11
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 454 HFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNNSC 585
           +FK+HP    +++  L FADD++  SRG + SV  +     + C
Sbjct: 9   NFKFHPNCAGIQLFHLAFADDIMFLSRGDIPSVSTMFAKLQHFC 52



 Score = 22.7 bits (47), Expect(3) = 2e-11
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNIMD 978
           +LW        K+LI    +C PK  GGL + +
Sbjct: 169 FLWGKADIGKNKSLIAWSVVCSPKKEGGLGLFN 201


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 57.4 bits (137), Expect(2) = 3e-11
 Identities = 29/82 (35%), Positives = 48/82 (58%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L+ ++ KS +YF G  S+ S  +++    F  G +  RY+G+PL TK+L      PL+
Sbjct: 114 SGLRISMEKSTVYFAGL-SHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLI 172

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           + +  +I SW+ + LSYAG  +
Sbjct: 173 EHIKKKIGSWSARFLSYAGRLN 194



 Score = 38.1 bits (87), Expect(2) = 3e-11
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
           LS LL +    + F YHP+  ++ +  L FADDL++ S G + S+  ++  F
Sbjct: 56  LSKLLDKATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVF 107


>emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268153|emb|CAB78489.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 318

 Score = 47.8 bits (112), Expect(3) = 4e-11
 Identities = 27/77 (35%), Positives = 43/77 (55%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S LK ++ K+ IY  G  S     +  +Q  F  G +  RY+G+PL TKRL      PLL
Sbjct: 168 SCLKISMEKTTIYLAGI-SDTVRQEFEEQFHFEVGCLPVRYLGLPLVTKRLTSQDYNPLL 226

Query: 767 DKMLGRITSWTTKLLSY 817
           +++  RI +WT ++ ++
Sbjct: 227 EQIKRRIGTWTARICNF 243



 Score = 38.1 bits (87), Expect(3) = 4e-11
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
           LS  L R   ++ F YHPK   L +  L FADD+++ + G L S+  ++  F++
Sbjct: 110 LSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDS 163



 Score = 28.9 bits (63), Expect(3) = 4e-11
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           +LW+     TKK  I  D +C+PK  GGL +
Sbjct: 265 FLWSGPELSTKKAKIAWDTICRPKQEGGLGL 295


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 58.9 bits (141), Expect(2) = 7e-11
 Identities = 32/82 (39%), Positives = 44/82 (53%)
 Frame = +2

Query: 587  SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
            S L  +L KS +Y       N  + IL    F  G +  RY+G PL TK++      PLL
Sbjct: 874  SGLHISLEKSTLYLAEVSELNR-NNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLL 932

Query: 767  DKMLGRITSWTTKLLSYAGEFS 832
            DK+  +I+SWT + LSYAG  +
Sbjct: 933  DKVRSKISSWTARSLSYAGRLA 954



 Score = 35.4 bits (80), Expect(2) = 7e-11
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 451 KHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
           ++  YHPK  KL +  L FADDL++F  G   SV  V+  F +
Sbjct: 827 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKD 869


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 55.5 bits (132), Expect(2) = 2e-10
 Identities = 27/82 (32%), Positives = 46/82 (56%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S LK ++ KS +Y  G  S+ +  +++ +  F  G +  RY+G+PL TK+       PL+
Sbjct: 62  SDLKISMEKSTVYLAGL-SHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLI 120

Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
           D +  +I SW+ + LSY G  +
Sbjct: 121 DHIKQKICSWSARFLSYTGRLN 142



 Score = 37.7 bits (86), Expect(2) = 2e-10
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +1

Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
           LS LL +    + F YHP+  ++ +  L FADDL++ S G + S+  ++  F+
Sbjct: 4   LSKLLDKAAGQRKFGYHPRCKQIGLTHLSFADDLMVLSDGKVRSIEGIVDVFD 56


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 51.6 bits (122), Expect(3) = 3e-10
 Identities = 27/79 (34%), Positives = 42/79 (53%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L  N NK+ +Y  G     S    +    F  G +  RY+G+PL +++L   +  PL+
Sbjct: 623 SGLLMNTNKTQLYHAGLSQSES--DSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLI 680

Query: 767 DKMLGRITSWTTKLLSYAG 823
           +K+  R  SW  +LLS+AG
Sbjct: 681 EKITARFNSWVVRLLSFAG 699



 Score = 30.4 bits (67), Expect(3) = 3e-10
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 454 HFKYHPK*PKLKIIQLGFADDLLLFSRG 537
           +  YHPK  +L+I  L FADD+++F  G
Sbjct: 577 YIAYHPKTSQLEISHLMFADDVMIFFDG 604



 Score = 29.3 bits (64), Expect(3) = 3e-10
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 850 VSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           +  I S+   +LW+  IDK     +   Q+C PK  GG+ +
Sbjct: 726 IKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGL 766


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 56.2 bits (134), Expect(2) = 4e-10
 Identities = 31/82 (37%), Positives = 46/82 (56%)
 Frame = +2

Query: 587  SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
            S L+ +L KS IY  G  S +   Q L    F  G +  RY+G+PL TK++      PL+
Sbjct: 1029 SGLQISLEKSTIYLAGV-SASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLI 1087

Query: 767  DKMLGRITSWTTKLLSYAGEFS 832
            + +  +I+SWT + LSYAG  +
Sbjct: 1088 EAVKTKISSWTARSLSYAGRLA 1109



 Score = 35.4 bits (80), Expect(2) = 4e-10
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 418  LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
            LS ++      ++  YHPK  K+ +  L FADDL++F  G+  S+  V+  F
Sbjct: 971  LSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022


>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
          Length = 517

 Score = 59.3 bits (142), Expect(2) = 2e-09
 Identities = 30/79 (37%), Positives = 48/79 (60%)
 Frame = +2

Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
           S L  N NKS I+  G  +    +QI+  L F +G++  +Y+GVPL + RL  + C+ L+
Sbjct: 19  SGLYPNPNKSDIFLSGVLNAER-EQIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLV 77

Query: 767 DKMLGRITSWTTKLLSYAG 823
           D++  ++  WT + LSYAG
Sbjct: 78  DRITSKVRHWTCRTLSYAG 96



 Score = 30.0 bits (66), Expect(2) = 2e-09
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 829 QLIKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
           Q+IK+V       I++ +LW+    +T    +  DQ+C PK  GGL I
Sbjct: 121 QVIKNVE-----QIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGI 163


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