BLASTX nr result
ID: Atropa21_contig00009878
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00009878
(980 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 65 2e-16
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 55 4e-14
ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264... 59 7e-13
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 81 7e-13
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 56 8e-13
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 61 2e-12
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 62 5e-12
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 63 7e-12
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 60 7e-12
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 54 8e-12
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 77 1e-11
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 54 2e-11
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 57 2e-11
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 57 3e-11
emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis ... 48 4e-11
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 59 7e-11
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 55 2e-10
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 52 3e-10
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 56 4e-10
ref|XP_002331075.1| predicted protein [Populus trichocarpa] 59 2e-09
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 65.5 bits (158), Expect(3) = 2e-16
Identities = 33/82 (40%), Positives = 51/82 (62%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L+ +L KS +Y G S + +++ + F+ G + RY+G+PL TKRL C PLL
Sbjct: 732 SGLRISLEKSTVYLAGL-SATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLL 790
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+++ RI SWT++ LSYAG +
Sbjct: 791 EQVRKRIGSWTSRFLSYAGRLN 812
Score = 42.4 bits (98), Expect(3) = 2e-16
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
LS +L + +HF YHPK + + L FADDL++ S G + S+ ++ F+
Sbjct: 674 LSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFD 726
Score = 24.6 bits (52), Expect(3) = 2e-16
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
+LW+ + K I +CKPK GGL +
Sbjct: 846 FLWSGTEMNSNKAKISWHMVCKPKDEGGLGL 876
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 55.5 bits (132), Expect(3) = 4e-14
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L+ +L KS +Y G +I + F G + RY+G+PL TKRL PLL
Sbjct: 379 SGLRISLEKSTLYMAGVSPIIK-QEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLL 437
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+++ RI +WT + S+AG F+
Sbjct: 438 EQIKKRIATWTFRFFSFAGRFN 459
Score = 43.1 bits (100), Expect(3) = 4e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNNSC 585
LS +L + V+ F +HPK +L + L FADDL++ S G S+ +L F+ C
Sbjct: 321 LSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFC 376
Score = 26.2 bits (56), Expect(3) = 4e-14
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
+LW+ + K I D +CKPK GGL +
Sbjct: 493 FLWSGSEMSSHKAKISWDIVCKPKAEGGLGL 523
>ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264629 [Solanum
lycopersicum]
Length = 261
Score = 59.3 bits (142), Expect(2) = 7e-13
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +1
Query: 397 LFA-KVKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
LFA +KYLS LLK + + K F+YHP+ KL I L FADDLL+F+RG L SV A+ + F
Sbjct: 149 LFAIAMKYLSRLLKGLKEDKQFRYHPRCSKLDITHLCFADDLLMFARGDLKSVKAIQLCF 208
Query: 574 N 576
+
Sbjct: 209 S 209
Score = 42.0 bits (97), Expect(2) = 7e-13
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVP 721
ASRL+ NL+KS IY GG + +QI+QQL + ++ F+Y+GVP
Sbjct: 214 ASRLQANLSKSSIYCGGVQQEVK-NQIVQQLGYNMEELPFKYLGVP 258
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 80.9 bits (198), Expect = 7e-13
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +2
Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPL 763
AS L+ NLNKS IY GG + QI+QQL +T ++ F+Y+GVPLS+K+L +Q PL
Sbjct: 524 ASGLQANLNKSSIYCGGVQM-EVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPL 582
Query: 764 LDKMLGRITSWTTKLLSYAG 823
++K++ RI SWT K LSYAG
Sbjct: 583 IEKVMARINSWTAKKLSYAG 602
Score = 69.7 bits (169), Expect = 2e-09
Identities = 71/226 (31%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
Frame = +1
Query: 397 LFA-KVKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
LFA ++YLS LLK + + K FKYHPK KL + L FADDLLLFSRG L S+ A+ F
Sbjct: 459 LFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCF 518
Query: 574 -------------NNSCI*AQGKSEQKLHIFWRIKILQQLGSN------------LTAVK 678
N S I G + + R +I+QQLG L++ K
Sbjct: 519 TEFSQASGLQANLNKSSIYCGG-----VQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKK 573
Query: 679 IHKR*YAF*VYWGTT*HKEVVLLT------MSAFIR*NAGKNHFMDNQATFVCRRIQLIK 840
++ + W K + + +S R K QA + ++ +I
Sbjct: 574 LNT------IQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWA--QLFIIP 625
Query: 841 SVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNIMD 978
+ + +I + R YLW+ TKK LI D++C PK GGL +++
Sbjct: 626 AKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPKYEGGLGLIN 671
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 55.8 bits (133), Expect(3) = 8e-13
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L+ N+ K+ +Y G +N + ++ + F G + RY+G+PL TKRL PL
Sbjct: 137 SGLQINMEKTTLYTAGVSDHNRY-MMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLF 195
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+++ RI +WT++ LS+AG +
Sbjct: 196 EQIRNRIGTWTSRYLSFAGRLN 217
Score = 35.8 bits (81), Expect(3) = 8e-13
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 409 VKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
++ LS +L + K F +HPK L + L FADDL++ + G + SV ++ N
Sbjct: 76 MEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMN 131
Score = 28.9 bits (63), Expect(3) = 8e-13
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 835 IKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
+ S + I SI +LW+ +K + D +CKPK GGL +
Sbjct: 236 LPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGL 281
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 61.2 bits (147), Expect(2) = 2e-12
Identities = 33/79 (41%), Positives = 46/79 (58%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L +L KS ++ S S + IL + F G + RY+G+PL TKR+ C PLL
Sbjct: 987 SGLNISLEKSTLFMA-SISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLL 1045
Query: 767 DKMLGRITSWTTKLLSYAG 823
+K+ RI+SW + LSYAG
Sbjct: 1046 EKIRSRISSWKNRFLSYAG 1064
Score = 38.1 bits (87), Expect(2) = 2e-12
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
LS +L + K F YHP+ + + L FADD+++FS G S+ VL F +
Sbjct: 929 LSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKD 982
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 62.0 bits (149), Expect(2) = 5e-12
Identities = 29/82 (35%), Positives = 53/82 (64%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S LK ++ KS +Y G ++ + + +I+Q+ F G + RY+G+PL +KRL C PL+
Sbjct: 620 SGLKISMEKSTMYLAGVQA-SVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLI 678
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+++ +I +WT++ LS+AG +
Sbjct: 679 EQLRKKIEAWTSRFLSFAGRLN 700
Score = 36.2 bits (82), Expect(2) = 5e-12
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVL 564
LS +L + + F YHPK + + L FADDL++ S G + S+ ++
Sbjct: 562 LSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIV 610
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 62.8 bits (151), Expect(2) = 7e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L +L KS +Y G N + IL F G + RY+G+PL TK++ PLL
Sbjct: 305 SGLHISLEKSTLYLAGVSELNR-NNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLL 363
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
DK+ +I+SWT + LSYAG +
Sbjct: 364 DKVRSKISSWTARSLSYAGRLA 385
Score = 35.0 bits (79), Expect(2) = 7e-12
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 451 KHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
++ YHPK KL + L FADDL++F G SV V+ F
Sbjct: 258 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIF 298
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 59.7 bits (143), Expect(2) = 7e-12
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S LK ++ KS IY G + + +I + +F G + RY+G+PL TKRL PLL
Sbjct: 259 SGLKISMEKSTIYLAGVTE-DVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLL 317
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+ + +I +WTT+ LSYAG +
Sbjct: 318 EHIKKKIGTWTTRYLSYAGRLN 339
Score = 38.1 bits (87), Expect(2) = 7e-12
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
LS LL + K F YH + +L + L FADDL++ S G + S+ ++ F+
Sbjct: 201 LSKLLDQAASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFD 253
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 53.5 bits (127), Expect(3) = 8e-12
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S LK ++ K+ IYF G S + + Q F G + RY+ +PL TKR PLL
Sbjct: 250 SGLKISMAKTTIYFAGI-SKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLL 308
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+++ RI +WT + LSYAG +
Sbjct: 309 EQIKRRIGTWTARFLSYAGRLN 330
Score = 38.1 bits (87), Expect(3) = 8e-12
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
LS L R ++ F YHPK L + L FADD+++ + G L S+ ++ F++
Sbjct: 192 LSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDS 245
Score = 25.4 bits (54), Expect(3) = 8e-12
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 850 VSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
V I + +LW+ T K I + +C+PK GGL +
Sbjct: 354 VREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGL 394
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 77.0 bits (188), Expect = 1e-11
Identities = 38/90 (42%), Positives = 56/90 (62%)
Frame = +2
Query: 584 ASRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPL 763
AS L+ ++ KSCIYFGG + +Q+ +++ G + FRY+GVPL++K+L QC+PL
Sbjct: 719 ASGLQASIEKSCIYFGGV-CHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPL 777
Query: 764 LDKMLGRITSWTTKLLSYAGEFS**KVSMY 853
+DK+ R W LLSYAG K +Y
Sbjct: 778 IDKITTRAQGWVAHLLSYAGRLQLVKTILY 807
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 53.9 bits (128), Expect(3) = 2e-11
Identities = 28/82 (34%), Positives = 46/82 (56%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S LK N+ K+ +Y G +N ++ + F + RY+G+PL TKRL PL
Sbjct: 649 SGLKINMEKTTLYTAGVSDHNR-HMMISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLF 707
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+++ RI +WT++ LS+AG +
Sbjct: 708 EQIRNRIGTWTSRYLSFAGRLN 729
Score = 37.0 bits (84), Expect(3) = 2e-11
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 409 VKYLSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
++ LS +L + K F +HPK L + L FADDL++ + G + SV ++ N
Sbjct: 588 MEVLSKMLDQAAGAKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMN 643
Score = 25.0 bits (53), Expect(3) = 2e-11
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 835 IKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAG 960
+ S + I SI +LW+ +K + D +CKPK G
Sbjct: 748 LPSACLKEINSICSAFLWSGPELNRRKAKVSWDDICKPKQGG 789
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 57.0 bits (136), Expect(3) = 2e-11
Identities = 34/80 (42%), Positives = 42/80 (52%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L N +KS IY G + + I Q F G FRY+GVPL + RL PLL
Sbjct: 55 SGLSINSDKSAIYSAGIRPHEL-SHIQQLTGFNLGGFPFRYLGVPLLSSRLNVCHYAPLL 113
Query: 767 DKMLGRITSWTTKLLSYAGE 826
K+ G I W+ K LSYAG+
Sbjct: 114 SKITGLIQGWSRKSLSYAGK 133
Score = 36.2 bits (82), Expect(3) = 2e-11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 454 HFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNNSC 585
+FK+HP +++ L FADD++ SRG + SV + + C
Sbjct: 9 NFKFHPNCAGIQLFHLAFADDIMFLSRGDIPSVSTMFAKLQHFC 52
Score = 22.7 bits (47), Expect(3) = 2e-11
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNIMD 978
+LW K+LI +C PK GGL + +
Sbjct: 169 FLWGKADIGKNKSLIAWSVVCSPKKEGGLGLFN 201
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 57.4 bits (137), Expect(2) = 3e-11
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L+ ++ KS +YF G S+ S +++ F G + RY+G+PL TK+L PL+
Sbjct: 114 SGLRISMEKSTVYFAGL-SHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLI 172
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+ + +I SW+ + LSYAG +
Sbjct: 173 EHIKKKIGSWSARFLSYAGRLN 194
Score = 38.1 bits (87), Expect(2) = 3e-11
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
LS LL + + F YHP+ ++ + L FADDL++ S G + S+ ++ F
Sbjct: 56 LSKLLDKATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVF 107
>emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268153|emb|CAB78489.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 318
Score = 47.8 bits (112), Expect(3) = 4e-11
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S LK ++ K+ IY G S + +Q F G + RY+G+PL TKRL PLL
Sbjct: 168 SCLKISMEKTTIYLAGI-SDTVRQEFEEQFHFEVGCLPVRYLGLPLVTKRLTSQDYNPLL 226
Query: 767 DKMLGRITSWTTKLLSY 817
+++ RI +WT ++ ++
Sbjct: 227 EQIKRRIGTWTARICNF 243
Score = 38.1 bits (87), Expect(3) = 4e-11
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
LS L R ++ F YHPK L + L FADD+++ + G L S+ ++ F++
Sbjct: 110 LSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDS 163
Score = 28.9 bits (63), Expect(3) = 4e-11
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 880 YLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
+LW+ TKK I D +C+PK GGL +
Sbjct: 265 FLWSGPELSTKKAKIAWDTICRPKQEGGLGL 295
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 58.9 bits (141), Expect(2) = 7e-11
Identities = 32/82 (39%), Positives = 44/82 (53%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L +L KS +Y N + IL F G + RY+G PL TK++ PLL
Sbjct: 874 SGLHISLEKSTLYLAEVSELNR-NNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLL 932
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
DK+ +I+SWT + LSYAG +
Sbjct: 933 DKVRSKISSWTARSLSYAGRLA 954
Score = 35.4 bits (80), Expect(2) = 7e-11
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 451 KHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFNN 579
++ YHPK KL + L FADDL++F G SV V+ F +
Sbjct: 827 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKD 869
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 55.5 bits (132), Expect(2) = 2e-10
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S LK ++ KS +Y G S+ + +++ + F G + RY+G+PL TK+ PL+
Sbjct: 62 SDLKISMEKSTVYLAGL-SHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLI 120
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
D + +I SW+ + LSY G +
Sbjct: 121 DHIKQKICSWSARFLSYTGRLN 142
Score = 37.7 bits (86), Expect(2) = 2e-10
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAFN 576
LS LL + + F YHP+ ++ + L FADDL++ S G + S+ ++ F+
Sbjct: 4 LSKLLDKAAGQRKFGYHPRCKQIGLTHLSFADDLMVLSDGKVRSIEGIVDVFD 56
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 51.6 bits (122), Expect(3) = 3e-10
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L N NK+ +Y G S + F G + RY+G+PL +++L + PL+
Sbjct: 623 SGLLMNTNKTQLYHAGLSQSES--DSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLI 680
Query: 767 DKMLGRITSWTTKLLSYAG 823
+K+ R SW +LLS+AG
Sbjct: 681 EKITARFNSWVVRLLSFAG 699
Score = 30.4 bits (67), Expect(3) = 3e-10
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 454 HFKYHPK*PKLKIIQLGFADDLLLFSRG 537
+ YHPK +L+I L FADD+++F G
Sbjct: 577 YIAYHPKTSQLEISHLMFADDVMIFFDG 604
Score = 29.3 bits (64), Expect(3) = 3e-10
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 850 VSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
+ I S+ +LW+ IDK + Q+C PK GG+ +
Sbjct: 726 IKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGL 766
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 56.2 bits (134), Expect(2) = 4e-10
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L+ +L KS IY G S + Q L F G + RY+G+PL TK++ PL+
Sbjct: 1029 SGLQISLEKSTIYLAGV-SASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLI 1087
Query: 767 DKMLGRITSWTTKLLSYAGEFS 832
+ + +I+SWT + LSYAG +
Sbjct: 1088 EAVKTKISSWTARSLSYAGRLA 1109
Score = 35.4 bits (80), Expect(2) = 4e-10
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 418 LSTLLKRVDKVKHFKYHPK*PKLKIIQLGFADDLLLFSRGYLISVVAVLIAF 573
LS ++ ++ YHPK K+ + L FADDL++F G+ S+ V+ F
Sbjct: 971 LSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022
>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
Length = 517
Score = 59.3 bits (142), Expect(2) = 2e-09
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +2
Query: 587 SRLKENLNKSCIYFGGSKSYNSWDQILQQLRFTKGDMLFRYIGVPLSTKRLYCLQCQPLL 766
S L N NKS I+ G + +QI+ L F +G++ +Y+GVPL + RL + C+ L+
Sbjct: 19 SGLYPNPNKSDIFLSGVLNAER-EQIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLV 77
Query: 767 DKMLGRITSWTTKLLSYAG 823
D++ ++ WT + LSYAG
Sbjct: 78 DRITSKVRHWTCRTLSYAG 96
Score = 30.0 bits (66), Expect(2) = 2e-09
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 829 QLIKSVNVSMIISILRIYLWTCYIDKTKKTLIF*DQLCKPKTAGGLNI 972
Q+IK+V I++ +LW+ +T + DQ+C PK GGL I
Sbjct: 121 QVIKNVE-----QIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGI 163