BLASTX nr result
ID: Atropa21_contig00009849
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00009849
(4887 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 196 e-125
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 143 8e-85
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 178 2e-77
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 177 2e-71
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 104 6e-70
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 158 2e-69
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 139 2e-68
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 94 5e-66
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 116 8e-64
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 127 2e-63
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 122 6e-62
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 141 5e-60
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 137 5e-60
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 106 5e-59
emb|CCA65974.1| hypothetical protein [Beta vulgaris subsp. vulga... 99 2e-58
emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulga... 117 6e-58
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 128 1e-57
ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660... 194 1e-57
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 98 3e-56
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 91 1e-54
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 196 bits (497), Expect(3) = e-125
Identities = 138/483 (28%), Positives = 229/483 (47%), Gaps = 7/483 (1%)
Frame = -1
Query: 3567 IVTCNVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYL 3388
I T NVRGLN P+K KE+ FL K+ + ETRV++ S + KK W+ NY
Sbjct: 3 ITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINNYA 62
Query: 3387 MDPNGRIWL-F*KSHVTLQVITKKEQFIHYFVEN-LAISFFNFLTVVYAHNEAHRRSKLW 3214
P GRIW+ + + V + V++ EQ I V+N ++ F V H A R+ LW
Sbjct: 63 CSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKV-LW 121
Query: 3213 SDLGQ-LNITQ*VWLLSGDFNVVLSTDDRL-GSPMLPVESKDFQDCFDNL*LTPLRSKGW 3040
+L +++ +L GD+N V S DRL G+ + E+ D + L + G
Sbjct: 122 EELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTGL 181
Query: 3039 HYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILH 2860
Y++ NK R+ ++ID F WI +Y V +++ +SDHSP + Q
Sbjct: 182 FYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLIFNLATQHDEG 241
Query: 2859 QKPFKLFITVLNHPDFKGIVRLVWNKNYRGTKMFKL*AKLKELKVGLKDINTCMDFYE*K 2680
+PFK + + F +V+ W KM + +L+ +K LK ++ K
Sbjct: 242 GRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFS---K 298
Query: 2679 LHKVIQELYITQSQMALQP---QDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIAS 2509
H ++EL + + P Q + KWS ++E L KS+ W++
Sbjct: 299 AHCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSL 358
Query: 2508 GDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCP 2329
GD N+++F K+++ RN I + +D +++T+ ++ E +F+ L+G+ + ++
Sbjct: 359 GDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAI 418
Query: 2328 SSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFFVQN*DIFKM 2149
V++ G +LS LV PI QEI + +I KAP +DGF FF ++ + K
Sbjct: 419 DLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQ 478
Query: 2148 ICY 2140
Y
Sbjct: 479 EIY 481
Score = 181 bits (460), Expect(3) = e-125
Identities = 133/461 (28%), Positives = 217/461 (47%), Gaps = 22/461 (4%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DP+SP+LF +++EY R + + ++ +F FHPKC++ + H+ FAD LL++ +
Sbjct: 642 KGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARA 701
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
+ SI + F FS SGL+A+I+KS I V + ++ + GSL FRYL
Sbjct: 702 DASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLG 761
Query: 1296 VSLSLKNSQLPNVCHWLRR*LKLSNVGQPNSYFILKDYNY*SLLCLV------YKHTGLR 1135
V L+ K C L + + ++ +Y L LV ++ +
Sbjct: 762 VPLASKKLNFSQ-CKPL-----IDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQ 815
Query: 1134 YLCCPNKL*K*LMLYANPFSGQVQLTCPRELLFFGKALSS-------------KSYRGQN 994
P KL K V+ TC R+ L+ G +S KS G N
Sbjct: 816 IFPLPKKLIK-----------AVETTC-RKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLN 863
Query: 993 ILNLCLWNRVAILRQLWILAEKKDCL*IRCVHIYYLKGDSLDSRNISENAK*VVRKIVET 814
+ N+ LWN+ AIL+ LW + K+D L +R V+ YY+K ++++ +S N ++RKI E+
Sbjct: 864 VTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFES 923
Query: 813 RKYVLQALSLQGDLITRLN---SMVTDTKFSIHKMYLALLPQHSKVTWRSINLQAGIYPR 643
R +L+TR ++ FSI K Y L + V W+ + P+
Sbjct: 924 R-----------ELLTRTGGWEAVSNHMNFSIKKTYKLLQEDYENVVWKRLICNNKATPK 972
Query: 642 HKFITCLAIVNRLPTVDGLAKIGL*VPPTCVFCALFDETLAHLFFECCIVQDIWHNMLMW 463
+FI LA++NRL T + +++ V P C C ET+ HLFF C ++IW +L++
Sbjct: 973 SQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNCIYSKEIWGKVLLY 1032
Query: 462 IGFHRQIGSWTDEVQWVAKWAKRKSGKGAIVSCYFAMVIAL 340
+ Q + + + K K V + V A+
Sbjct: 1033 LNLQPQADAQAKKELAIKKARSTKDRNKLYVMMFTESVYAI 1073
Score = 122 bits (307), Expect(3) = e-125
Identities = 67/156 (42%), Positives = 96/156 (61%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I+ ++ + +FFE G + K I+ TAVTLIPK+ KDY P T
Sbjct: 476 IKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILT 535
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
R++ VI +V + FI R+I D+IL + EL++ YNR+ +S +CV+KVD+RKAYD +
Sbjct: 536 KRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSV 595
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
E FL SML EL FP FI+ +M CV +VSYS+++N
Sbjct: 596 EWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLN 631
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 143 bits (361), Expect(4) = 8e-85
Identities = 137/488 (28%), Positives = 216/488 (44%), Gaps = 28/488 (5%)
Frame = -1
Query: 3555 NVRGLNHPLKQKELVLFLKKNKVDVFGCL-ETRVKEHKSENMLKKVELGWNTCCNYLMDP 3379
NVRGLN K + ++++N FGCL ETRVKE K ++ K+ W+ NY +
Sbjct: 7 NVRGLNKSSKHSVIKKWIEENNFQ-FGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65
Query: 3378 NGRIWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDL-- 3205
GRIW+ + +V L I K Q + V+ F + VYA N R LWS+L
Sbjct: 66 RGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELKD 125
Query: 3204 --GQLNITQ*VWLLSGDFNVVLSTDDRLGS---PMLPVESKDFQDCFDNL*LTPLRSKGW 3040
I W L GDFN L + S PM+ +DFQ + LT + ++G
Sbjct: 126 HYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQGP 185
Query: 3039 HYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDH---SPALTQYLPQL 2869
+T+ NK++H + K+D V W Q +SQ F SDH +L
Sbjct: 186 LFTWCNKREHGL-IMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRISLNSEAGNK 244
Query: 2868 ILHQKPFKLFITVLNHPDFKGIVRLVWNKN----YRGTKMFKL*AKLKELKVGLKDI--- 2710
+ KPFK + + DFK +V W + +F+ LK LK ++ +
Sbjct: 245 VQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMARD 304
Query: 2709 ---NTCMDFYE*KLHKVI---QELYITQ-SQMALQPQDQAXXXXXXXXXXXINKWSLVEE 2551
N E +K++ Q + +T S MA++ ++ A ++ +++EE
Sbjct: 305 RLGNLSKKANE--AYKILCAKQHVNLTNPSSMAMEEENAA--------YSRWDRVAILEE 354
Query: 2550 QALIHKSKASWIASGDENTRYFHA*CKIKENRNNISSICDD---VSNKITDLVLVEKEFI 2380
+ L KSK W GD+NT+ FH +E N I I + V K ++ + F
Sbjct: 355 KYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFF 414
Query: 2379 SFFTNLMGSEAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSV 2200
F L+ ++ E + + + R S + +L+ P+ +EI + +P DK+P
Sbjct: 415 REFLQLIPNDFEGVTI-TELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGP 473
Query: 2199 DGFPVEFF 2176
DG+ EFF
Sbjct: 474 DGYTSEFF 481
Score = 95.5 bits (236), Expect(4) = 8e-85
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 13/176 (7%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I D+ L+++ FF G L K I+ T + LIPK +KDY P
Sbjct: 488 IGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIA 547
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
NR+K V+ ++ + AF++ R +I+++L + EL+K Y++ ++S +C +K+D+ KA+D +
Sbjct: 548 NRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSV 607
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN-------------KRGCLLS 1670
+ FL ++ L FP +FI + C+ + S+S+ +N ++GC LS
Sbjct: 608 QWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALS 663
Score = 77.4 bits (189), Expect(4) = 8e-85
Identities = 40/124 (32%), Positives = 69/124 (55%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKVEI 1471
+RQ +SPYLF+I ++ + L + F +HPKCK G+ H+ FAD L++ +I
Sbjct: 656 LRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKI 715
Query: 1470 QSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLSVS 1291
+SI+ + + F F+ SGL+ +++KS + ++ + + E+ F G L RYL +
Sbjct: 716 RSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLP 775
Query: 1290 LSLK 1279
L K
Sbjct: 776 LITK 779
Score = 70.9 bits (172), Expect(4) = 8e-85
Identities = 32/99 (32%), Positives = 58/99 (58%)
Frame = -3
Query: 1282 KKLTITQCLPLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKI 1103
K+L+ T CLPL+E+V + I W+++ L Y RL L+ SV++ + +W F LP+ ++
Sbjct: 779 KRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRE 838
Query: 1102 IDVVCKSFLWTSSANLSKRAIVFWQSFVFQKLQGAKHLK 986
++ +C +FLW+ + S +A + W K +G L+
Sbjct: 839 LEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLR 877
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 178 bits (452), Expect(3) = 2e-77
Identities = 135/471 (28%), Positives = 215/471 (45%), Gaps = 11/471 (2%)
Frame = -1
Query: 3555 NVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYLMDPN 3376
NVRG N+ ++++ + K +K LETRVKEH++ L GW + CNY
Sbjct: 8 NVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFAAL 67
Query: 3375 GRIWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQL 3196
GRIW+ V + V++K +Q I V+ IS +T VYA N + R +LWS+L L
Sbjct: 68 GRIWVVWDPAVEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSELELL 127
Query: 3195 NITQ*V----WLLSGDFNVVLS-TDDRLGSPMLPVESKDFQDCFDNL*LTPLRSKGWHYT 3031
Q W++ GDFN L D G + ++F++C ++ L +G HYT
Sbjct: 128 AANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGNHYT 187
Query: 3030 FYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQKP 2851
++N Q+++ + KID + W+ F + SDH P+ Q KP
Sbjct: 188 WWNNQENN-PIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKP 246
Query: 2850 FKLFITVLNHPDFKGIVRLVWNK-NYRGTKMFKL*AKLKELKVGLKDINTCMDFY---E* 2683
FKL +++HP+F +R+ W++ Y+G+ MF L K K LK ++ N + Y E
Sbjct: 247 FKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFN--REHYSGLEK 304
Query: 2682 KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIASGD 2503
++ + Q L Q+ + P + +L EE+ L KS+ W+ GD
Sbjct: 305 RVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWA-ELALAEERFLCQKSRVLWLKCGD 363
Query: 2502 ENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCPSS 2323
NT +FH + N I + D +I + ++ + FF L GS + I
Sbjct: 364 SNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGI 423
Query: 2322 IVIKKGPRLSCQQ--RCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFF 2176
I R C + R L + +I + +P +K+P DG+ EFF
Sbjct: 424 SQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFF 474
Score = 86.7 bits (213), Expect(3) = 2e-77
Identities = 42/156 (26%), Positives = 91/156 (58%)
Frame = -3
Query: 2146 MLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRIK 1967
++ +++EFF G+LL + TAVT++PK P+ + ++ P R++
Sbjct: 485 LIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLE 544
Query: 1966 NVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*CF 1787
N++ +S ++ AF++ R + +++L + EL++ + + ++S++ V+KVDLRKA+D + F
Sbjct: 545 NILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGF 604
Query: 1786 LRSMLVELDFPFKFIQRVMKCVISVSYSLVINKRGC 1679
+ L + P +F+ + +C+ S S+S+ ++ C
Sbjct: 605 IIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLC 640
Score = 76.3 bits (186), Expect(3) = 2e-77
Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 15/273 (5%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DP+SP LF+IA+E R L + +HPK + I+ + FAD L+I+
Sbjct: 647 KGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDG 706
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
+ S++ + F ++SGL+ N +KS + + +++ K + L F G+ FRYL
Sbjct: 707 KASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFPFRYLG 765
Query: 1296 VSL---SLKNSQLPNVC--------HWLRR*LKLSNVGQPNSYFILKDYNY*SLLCLVYK 1150
+ L L+ S + HW + L + Q S I N+ ++ K
Sbjct: 766 LPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPK 825
Query: 1149 HTGLRYLCCPNKL*K*L--MLYANPFS--GQVQLTCPRELLFFGKALSSKSYRGQNILNL 982
CC + + L+ N + G ++++ L K+ G + N
Sbjct: 826 -------CCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCL-------PKAEGGLGLRNF 871
Query: 981 CLWNRVAILRQLWILAEKKDCL*IRCVHIYYLK 883
WN+ LR +W+L ++D L + H L+
Sbjct: 872 WTWNKTLNLRLIWMLFARRDSLWVAWNHANRLR 904
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 175 bits (444), Expect(2) = 2e-71
Identities = 133/450 (29%), Positives = 212/450 (47%), Gaps = 11/450 (2%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DPMSP+LF + +EY R L L + F FHPKC++ I H+ FAD LL++C+
Sbjct: 639 KGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRA 698
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
+ S+ + F FS SGL A+ +KS I V ++ E+ + G L FRYL
Sbjct: 699 DKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLG 758
Query: 1296 VSLSLKN----------SQLPNVCH-WLRR*LKLSNVGQPNSYFILKDYNY*SLLCLVYK 1150
V L+ K + N W+ + L + Q + NY + + + K
Sbjct: 759 VPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSK 818
Query: 1149 HTGLRYLCCPNKL*K*LMLYANPFSGQVQLTCPRELLFFGKALSSKSYRGQNILNLCLWN 970
+ + K+ + + ++G+ + T + + + KS G N++N+ WN
Sbjct: 819 ----KVIQAVEKVCRKFL-----WTGKTEET-KKAPVAWATIQRPKSRGGWNVINMKYWN 868
Query: 969 RVAILRQLWILAEKKDCL*IRCVHIYYLKGDSLDSRNISENAK*VVRKIVETRKYVLQAL 790
R A+L+ LW + K+D L +R +H YY+K + + NIS ++RKIV+ R + L
Sbjct: 869 RAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDH----L 924
Query: 789 SLQGDLITRLNSMVTDTKFSIHKMYLALLPQHSKVTWRSINLQAGIYPRHKFITCLAIVN 610
S GD + + KFS+ K Y + +V WR + P+ KFI + +
Sbjct: 925 SNIGD----WDEICIGDKFSMKKAYKKISENGERVRWRRLICNNYATPKSKFILWMMLHE 980
Query: 609 RLPTVDGLAKIGL*VPPTCVFCALFDETLAHLFFECCIVQDIWHNMLMWIGFHRQIGSWT 430
RLPTVD +++ G+ C ET+ HLFF C +W + + F S
Sbjct: 981 RLPTVDRISRWGVQCDLNYRLCRNDGETIQHLFFSCSYSAGVWSKICYIMRFPNSGVSHQ 1040
Query: 429 DEVQWVAKWAKRKSGKGAIVSCYFAMVIAL 340
+ + V A++K GK IV Y V A+
Sbjct: 1041 EIISSVCGQARKKKGK-LIVMLYTEFVYAI 1069
Score = 124 bits (312), Expect(2) = 2e-71
Identities = 61/158 (38%), Positives = 98/158 (62%)
Frame = -3
Query: 2164 GHIQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXX 1985
G I+ ++ ++EFF ++ + I+ VTL+PKV T VK++ P
Sbjct: 471 GSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKM 530
Query: 1984 XTNRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYD 1805
TNR+K +I +V+ + FI R+I D+IL + EL++ Y RK +S +C+MKVD+RKAYD
Sbjct: 531 LTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYD 590
Query: 1804 LIE*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
+E FL ++L E FP +F+ +M+CV +VSYS+++N
Sbjct: 591 SVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVN 628
Score = 177 bits (449), Expect = 4e-41
Identities = 138/488 (28%), Positives = 223/488 (45%), Gaps = 3/488 (0%)
Frame = -1
Query: 3570 IIVTCNVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNY 3391
+ V+ NVRG+N P K KE+ FL +K+ V LETRV+E + + K+ W NY
Sbjct: 2 LCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNY 61
Query: 3390 LMDPNGRIWL-F*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLW 3214
RIW+ + + V + + +EQ + +++ + + V H A R+S LW
Sbjct: 62 SHSARERIWIGWRPAWVNVTLTHTQEQLMVCDIQDQSHKL-KMVAVYGLHTIADRKS-LW 119
Query: 3213 SDLGQLNITQ*VWLLSGDFNVVLSTDDRL-GSPMLPVESKDFQDCFDNL*LTPLRSKGWH 3037
S L Q Q ++ GDFN V ++DRL G+ + E++DFQ L RS +
Sbjct: 120 SGLLQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRSTWSY 179
Query: 3036 YTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQ 2857
Y++ N RV ++ID + W+ Y++V + +L P +SDHSP L +
Sbjct: 180 YSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHSPLLFNLMTGRPQGG 239
Query: 2856 KPFKLFITVLNHPDFKGIVRLVWNKNYRGTKMFKL*AKLKELKVGLKDINTC-MDFYE*K 2680
KPFK + +F V WN K+ + LK +K LK + T + K
Sbjct: 240 KPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLNLKAVKRELKQMKTQKIGLAHEK 299
Query: 2679 LHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIASGDE 2500
+ + +L QSQ D + WS +E+ L KS+ +W+ GD
Sbjct: 300 VKNLRHQLQDLQSQDDFDHND-IMQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQQGDT 358
Query: 2499 NTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCPSSI 2320
N++ F K + N I + + I D V++E + F+ L+G+ A +
Sbjct: 359 NSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGVDLN 418
Query: 2319 VIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFFVQN*DIFKMICY 2140
++ G LS Q + +L+ + + EI + I +DKAP +DGF FF ++ K Y
Sbjct: 419 TVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIY 478
Query: 2139 CH*KNFLN 2116
+ F N
Sbjct: 479 AGIQEFFN 486
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 104 bits (259), Expect(4) = 6e-70
Identities = 94/378 (24%), Positives = 165/378 (43%), Gaps = 15/378 (3%)
Frame = -1
Query: 3264 LTVVYAHNEAHRRSKLWSDLGQLN----ITQ*VWLLSGDFNVVLSTDDRLGSPMLPVE-- 3103
L+ VYA + R LW+++ + + W + GDFN +L + S V+
Sbjct: 3 LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62
Query: 3102 SKDFQDCFDNL*LTPLRSKGWHYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFL 2923
++ F++ LT L +G +T++NK+ V K+D + KW + F
Sbjct: 63 TRIFRETILLASLTDLSFRGNTFTWWNKRSR-APVAKKLDRILVNDKWTTTFPSSLGLFG 121
Query: 2922 NPKMSDHSPALTQYLPQLILHQKPFKLFITVLNHPDFKGIVRLVW-NKNYRGTKMFKL*A 2746
P SDHS + +KPF+ +L +F ++ L W + + G+ M+++
Sbjct: 122 EPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSV 181
Query: 2745 KLKELKVGLKDINTCMDFY---E*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXI 2575
KLK LK ++D + D Y E + + L + QS + P
Sbjct: 182 KLKALKKVIRDFSR--DNYSDIEKRTKEAHDALLLAQSVLLASP----CPSNAAIEAETQ 235
Query: 2574 NKWSLVEEQA---LIHKSKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDL 2404
KW ++ E +S+ +W+ GD N+ YFH +++ N+I + D V ++I
Sbjct: 236 RKWRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQ 295
Query: 2403 VLVEKEFISFFTNLMGSEAEKIPCPSSIVIKK--GPRLSCQQRCTLV*PIITQEI*TYIK 2230
+E + +F + +GSE + +P I R S Q+ +L P +++I
Sbjct: 296 QNLENHCVEYFQSNLGSE-QGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFF 354
Query: 2229 EIPHDKAPSVDGFPVEFF 2176
+P +KA DGF EFF
Sbjct: 355 SLPRNKASGPDGFSPEFF 372
Score = 94.7 bits (234), Expect(4) = 6e-70
Identities = 48/149 (32%), Positives = 90/149 (60%)
Frame = -3
Query: 2137 SLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRIKNVI 1958
++ EFF GKLLK + T + LIPK+ + + + D+ P T+R+K+ +
Sbjct: 386 AIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFL 445
Query: 1957 NTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*CFLRS 1778
+SH++ AF+ R ++++L + EL+ YN+K+++ ++KVDLRKA+D + F+ S
Sbjct: 446 PAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVS 505
Query: 1777 MLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
L L+ P KF +++C+ + S+S+++N
Sbjct: 506 ALRALNVPEKFTCWILECLSTASFSVILN 534
Score = 74.3 bits (181), Expect(4) = 6e-70
Identities = 36/99 (36%), Positives = 54/99 (54%)
Frame = -3
Query: 1282 KKLTITQCLPLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKI 1103
+KLTI + PL+EK+T W +LL + R+QLL SV+ G+ +W F+LP +K
Sbjct: 669 RKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKK 728
Query: 1102 IDVVCKSFLWTSSANLSKRAIVFWQSFVFQKLQGAKHLK 986
I+ +C FLW+S + A V W K +G L+
Sbjct: 729 IESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLR 767
Score = 63.9 bits (154), Expect(4) = 6e-70
Identities = 40/123 (32%), Positives = 68/123 (55%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DPMSPYLF++A+E F L + +HPK + I+H+ FAD ++I+
Sbjct: 545 KGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDG 604
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
+ S+ + E+ F+ SGL N +K+ + + + + + + + + F GSL RYL
Sbjct: 605 KSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQS-ESDSMASYGFKLGSLPVRYLG 663
Query: 1296 VSL 1288
+ L
Sbjct: 664 LPL 666
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 158 bits (400), Expect(2) = 2e-69
Identities = 130/471 (27%), Positives = 205/471 (43%), Gaps = 8/471 (1%)
Frame = -1
Query: 3555 NVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYLMDPN 3376
N+RG N+ + ++K NK G +ET VK+ K + + GW+ NY
Sbjct: 9 NIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSDL 68
Query: 3375 GRIWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQL 3196
G+IW+ V + V+ K Q I V + ++VVYA NE R +LW ++ +
Sbjct: 69 GKIWVMWDPSVQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIVNM 128
Query: 3195 NITQ*V----WLLSGDFNVVLSTDDRLGSPMLPVE--SKDFQDCFDNL*LTPLRSKGWHY 3034
++ + WL+ GDFN VL+ + L V+ +DF+DC L+ LR KG +
Sbjct: 129 VVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTF 188
Query: 3033 TFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQK 2854
T++NK H V KID + W + F + SDH I ++
Sbjct: 189 TWWNK-SHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSIKAKR 247
Query: 2853 PFKLFITVLNHPDFKGIVRLVW-NKNYRGTKMFKL*AKLKELKVGLKDINTCMDFYE*KL 2677
PFK F +L + DF +VR W N G+ MF++ KLK LK +KD + K
Sbjct: 248 PFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKR 307
Query: 2676 HKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIASGDEN 2497
K + I L + + EE KS+ SW A GD N
Sbjct: 308 TKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAAEESFFRQKSRISWFAEGDGN 367
Query: 2496 TRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEK-IPCPSSI 2320
T+YFH + + N+IS++ D + + S+F +L+G E + + + +
Sbjct: 368 TKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQNDM 427
Query: 2319 VIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFFVQN 2167
+ R S Q C L ++I + +P +K+ DGF EFF+ +
Sbjct: 428 NLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDS 478
Score = 134 bits (338), Expect(2) = 2e-69
Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 8/392 (2%)
Frame = -3
Query: 2137 SLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRIKNVI 1958
++KEFF G LLK + T + LIPK+ +PT D+ P T+R++ ++
Sbjct: 489 AIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLL 548
Query: 1957 NTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*CFLRS 1778
+ ++S + AF+ R++ +++L + +L+ YN ++S + ++KVDL+KA+D + F+ +
Sbjct: 549 SGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIA 608
Query: 1777 MLVELDFPFKFIQRVMKCVISVSYSLVIN--KRGCLLSMLEVKTYKAE*SYVTLPFYHCY 1604
L L P KFI + +C+ + ++++ IN G S ++ Y+ F
Sbjct: 609 ALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYL---FVLAM 665
Query: 1603 RVFS*IVGCLVSKF*VQISPKM*KTGDCPYLFC*LSSYIL*G*DSIYKTALRDLSDILRC 1424
FS ++ + PK +F G L D
Sbjct: 666 EAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASW 725
Query: 1423 VWVESQYRQEFHFYV*GKGKVKIRNSSNSRFL*GLPSF*IP*CLTFL------KKLTITQ 1262
++ + + H Y+ G +++ SN+ G P +P + +L +KL I +
Sbjct: 726 SGLKVN-KDKSHLYLAGLNQLE----SNANAAYGFPIGTLP--IRYLGLPLMNRKLRIAE 778
Query: 1261 CLPLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKS 1082
PL+EK+T + W K L + R+QL+ SV+FG +W F+LPK +K I+ +C
Sbjct: 779 YEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSR 838
Query: 1081 FLWTSSANLSKRAIVFWQSFVFQKLQGAKHLK 986
FLW+ + +K V W + K +G L+
Sbjct: 839 FLWSGNIEQAKGIKVSWAALCLPKSEGGLGLR 870
Score = 73.6 bits (179), Expect = 9e-10
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 12/273 (4%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DP+SPYLF++A+E F L ++ +HPK I+H+ FAD ++I+
Sbjct: 648 KGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDG 707
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
S+ + ET F+ SGLK N DKS + ++ + + L+ F G+L RYL
Sbjct: 708 GSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQ-LESNANAAYGFPIGTLPIRYLG 766
Query: 1296 VSLSLKNSQLPNV-----------CHWLRR*LKLSNVGQPNSYFILKDYNY*SLLCLVYK 1150
+ L + ++ W+ + L + Q S I N+ L+ K
Sbjct: 767 LPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPK 826
Query: 1149 HTGLRY-LCCPNKL*K*LMLYANPFSGQVQLTCPRELLFFGKALSSKSYRGQNILNLCLW 973
R C L +SG ++ ++ + L KS G + L W
Sbjct: 827 GCIKRIESLCSRFL----------WSGNIEQAKGIKVSWAALCLP-KSEGGLGLRRLLEW 875
Query: 972 NRVAILRQLWILAEKKDCL*IRCVHIYYLKGDS 874
N+ +R +W L KD L H+++L S
Sbjct: 876 NKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGS 908
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 139 bits (351), Expect(3) = 2e-68
Identities = 128/474 (27%), Positives = 202/474 (42%), Gaps = 16/474 (3%)
Frame = -1
Query: 3546 GLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYLMDPNGRI 3367
G N P + + K N+ G +E VK+ K + + + GW NY G+I
Sbjct: 4 GFNIPSHRNGFKKWFKVNRPIFGGVIEKHVKQPKDKKFINALLPGWFFDENYGFSDLGKI 63
Query: 3366 WLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQLNIT 3187
W+ V + ++ K Q I V + ++VVYA NE +R +LW ++ L +
Sbjct: 64 WVLWDPSVEVVIVAKSLQMITCEVLFPNSRTWIVISVVYAANEDDKRKELWREITALVAS 123
Query: 3186 Q*V----WLLSGDFNVVLSTDDRLGSPMLPVESK--DFQDCFDNL*LTPLRSKGWHYTFY 3025
W+L GDFN VL + L V+ + DF++C + L+ L KG +T++
Sbjct: 124 PVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSSFTWW 183
Query: 3024 NKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQKPFK 2845
NK + V KID + W + F P SDH+ I ++PFK
Sbjct: 184 NKSKTR-PVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASCGVVLELDPIKAKRPFK 242
Query: 2844 LFITVLNHPDFKGIVRLVW-NKNYRGTKMFKL*AKLKELKVGLKDINTCMDFYE*KLHKV 2668
F +L +P+F +V VW + N G+ MF++ KLK LK +KD + Y L K
Sbjct: 243 FFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLN--YS-NLEKR 299
Query: 2667 IQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLV---EEQALIHKSKASWIASGDEN 2497
+E + T D KW ++ EE +S+ +W A GD N
Sbjct: 300 TEEAHETLLSFQNLTLDNPSLENAAHELEAQRKWQILATAEESFFRQRSRVTWFAEGDGN 359
Query: 2496 TRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPC-PSSI 2320
TRYFH +++ N I+++ DD +I + +F NL+ + + +
Sbjct: 360 TRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDNDPYSLEQDDM 419
Query: 2319 VIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPV-----EFFV 2173
+ R Q L ++I +P +KA DGFPV EFF+
Sbjct: 420 NLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGFPVTAAVREFFI 473
Score = 88.2 bits (217), Expect(3) = 2e-68
Identities = 45/153 (29%), Positives = 91/153 (59%)
Frame = -3
Query: 2137 SLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRIKNVI 1958
+++EFF G LLK + T + LIPK P+ + D+ P T+R++ ++
Sbjct: 467 AVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQKLL 526
Query: 1957 NTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*CFLRS 1778
+ ++S ++ AF+ R + +++L + E++ YN +++S + ++KVDLRKA+D + F+ +
Sbjct: 527 SCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIA 586
Query: 1777 MLVELDFPFKFIQRVMKCVISVSYSLVINKRGC 1679
L+ L P KFI + +C+ + ++++ +N GC
Sbjct: 587 ALLALGVPTKFINWIHQCISTPTFTVSVN--GC 617
Score = 83.6 bits (205), Expect(3) = 2e-68
Identities = 57/178 (32%), Positives = 87/178 (48%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DP+SPYLF++A+E F + L + R+HPK I+H+ FAD ++I+
Sbjct: 626 KGLRQGDPLSPYLFVLAMEVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMIFFDG 685
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
S+ + ET F+ SGLK N DKS + + E+ + L F +G L RYL
Sbjct: 686 GSSSLHGICETLEDFASWSGLKVNNDKSHFFCAGL-EQAERNSLAAYGFPQGCLPIRYLG 744
Query: 1296 VSLSLKNSQLPNVCHWLRR*LKLSNVGQPNSYFILKDYNY*SLLCLVYKHTGLRYLCC 1123
+ L + ++ L + K S+ GQ Y ++N L +V G CC
Sbjct: 745 LPLMCRKLRIAEYEPLLEKSPKNSDHGQQIVYLTQVEFNLLLPLSMVSSTFGCPLSCC 802
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 93.6 bits (231), Expect(4) = 5e-66
Identities = 46/153 (30%), Positives = 89/153 (58%)
Frame = -3
Query: 2149 DMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRI 1970
+ +L+++ FF G L K I+ T + LIPK +KDY P NR+
Sbjct: 379 EFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRL 438
Query: 1969 KNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*C 1790
K V+ + + AF++ R +I+++L + E++K Y++ S+S++C +K+D+ KA+D ++
Sbjct: 439 KLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWK 498
Query: 1789 FLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL ++L ++FP +F + C+ + S+S+ +N
Sbjct: 499 FLINVLEAMNFPPEFTHWITLCITTASFSVQVN 531
Score = 84.0 bits (206), Expect(4) = 5e-66
Identities = 91/371 (24%), Positives = 156/371 (42%), Gaps = 20/371 (5%)
Frame = -1
Query: 3228 RSKLWSDLGQLN----ITQ*VWLLSGDFNVVLSTDDRLGSPMLPVES---KDFQDCFDNL 3070
R +LW+DL + I W++ GDFN +L ++ S PV + +DFQ ++
Sbjct: 4 RKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNHC 63
Query: 3069 *LTPLRSKGWHYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPA- 2893
+T L G +T+ NK+++D + K+D V W+Q + + F SDH
Sbjct: 64 SITDLAYHGPLFTWSNKRENDL-IAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCR 122
Query: 2892 --LTQYLPQLILHQKPFKLFITVLNHPDFKGIVRLVWNKN----YRGTKMFKL*AKLKEL 2731
L ++ ++PFK + F V WN+ + +F+ KLK L
Sbjct: 123 INLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGL 182
Query: 2730 KVGLKDINTCMDFYE*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKW---SL 2560
K L+++ L K +E + T Q KW ++
Sbjct: 183 KPLLRNLGKERLG---NLVKQTKEAFETLCQKQAMKMANPSPSSMQEENEAYAKWDHIAV 239
Query: 2559 VEEQALIHKSKASWIASGDENTRYFHA*CKIKENRNNISS-ICDD--VSNKITDLVLVEK 2389
+EE+ L +SK W+ GD N + FH +E +N+I IC D V+++ + +
Sbjct: 240 LEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAE 299
Query: 2388 EFISFFTNLMGSEAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKA 2209
F L+ ++ E I + R S + L + +EI + +P+DK+
Sbjct: 300 HHFREFLQLIPNDFEGI-AVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKS 358
Query: 2208 PSVDGFPVEFF 2176
P DG+ EF+
Sbjct: 359 PGPDGYTAEFY 369
Score = 75.5 bits (184), Expect(4) = 5e-66
Identities = 42/126 (33%), Positives = 72/126 (57%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
+ +RQ +SPYLF+I+++ + L +F +HPKC+ G+ H+ FAD L+I
Sbjct: 542 RELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDG 601
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
+++SI + + F+ SGLK +++KS + ++ V+ + EI+Q F G L RYL
Sbjct: 602 KVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLG 661
Query: 1296 VSLSLK 1279
+ L K
Sbjct: 662 LPLVSK 667
Score = 71.2 bits (173), Expect(4) = 5e-66
Identities = 29/86 (33%), Positives = 55/86 (63%)
Frame = -3
Query: 1282 KKLTITQCLPLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKI 1103
K+LT + CLPL+E++ + I+ W+++ L + RL L+ S ++ + +W F LP+ ++
Sbjct: 667 KRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIRE 726
Query: 1102 IDVVCKSFLWTSSANLSKRAIVFWQS 1025
ID +C +FLW+ + S +A V W++
Sbjct: 727 IDKLCSAFLWSGTELSSNKAKVSWEA 752
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 116 bits (291), Expect(3) = 8e-64
Identities = 58/156 (37%), Positives = 102/156 (65%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I D ++ ++ +FF+ G + K I+ T +TL+PK + T VK++ P T
Sbjct: 156 IGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILT 215
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
+R++ V+N++VS + AF++ R I D+I+ SHEL+K Y+RK +S +C++K+DL+KAY+ +
Sbjct: 216 SRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSV 275
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
E F++ +++EL F +KF+ VM C+ + SY+ IN
Sbjct: 276 EWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNIN 311
Score = 94.7 bits (234), Expect(3) = 8e-64
Identities = 47/132 (35%), Positives = 73/132 (55%)
Frame = -1
Query: 2571 KWSLVEEQALIHKSKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVE 2392
KWS +EE+ + KS+A+WI GD NT++FHA K + +NNI + + +I L++
Sbjct: 18 KWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDGTRIDKHNLIK 77
Query: 2391 KEFISFFTNLMGSEAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDK 2212
+E F+ LMGS + +P V+K+GP LS Q+ L E+ + + K
Sbjct: 78 EEIRGFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSK 137
Query: 2211 APSVDGFPVEFF 2176
AP +DG+ V FF
Sbjct: 138 APGIDGYNVHFF 149
Score = 84.7 bits (208), Expect(3) = 8e-64
Identities = 36/79 (45%), Positives = 55/79 (69%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K +RQ DP+SPYLF+I +EY + L+ L +N+ FRFHP+CK+ + H+CF D LL++ +
Sbjct: 322 KGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRLNLIHVCFVDDLLLFSRG 381
Query: 1476 EIQSIKLL*ETFLIFSDVS 1420
++ S+ L E F +FS S
Sbjct: 382 DVDSVSQLFEAFSLFSAAS 400
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 127 bits (320), Expect(5) = 2e-63
Identities = 122/471 (25%), Positives = 205/471 (43%), Gaps = 8/471 (1%)
Frame = -1
Query: 3546 GLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKV-ELGWNTCCNYLMDPNGR 3370
G+ PL Q L + D+ +ET ++ + + K +LG+ PNGR
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETL---NQCDKVCKLAYDLGFPNVIT--QPPNGR 445
Query: 3369 ---IWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQ 3199
+ L K++V+L +I++ E+ I V SF+ L+ VY H R +LW L
Sbjct: 446 SGGLALMWKNNVSLSLISQDERLIDSHVTFNNKSFY--LSCVYGHPTQSERHQLWQTLEH 503
Query: 3198 LNITQ*V-WLLSGDFNVVLSTDDRLGSPMLPVES-KDFQDCFDNL*LTPLRSKGWHYTFY 3025
++ + WLL GDFN +LS +++G PM + ++F++ + + +RSKG +++
Sbjct: 504 ISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWV 563
Query: 3024 NKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQKPFK 2845
++H V +D VF W + +I+FL+ SDH P L + K F+
Sbjct: 564 G-ERHTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRSKLFR 622
Query: 2844 LFITVLNHPDFKGIVRLVW--NKNYRGTKMFKL*AKLKELKVGLKDINTCMDFYE*KLHK 2671
+++ P FK IV+ W N+N R T + + + ++ LK + E ++ K
Sbjct: 623 FDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNS--EQRIKK 680
Query: 2670 VIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIASGDENTR 2491
+ L A++ + + K EE KS+ W+ GD+NT
Sbjct: 681 LQSSL-----NRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 735
Query: 2490 YFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCPSSIVIK 2311
YFHA K + ++N +++I DD T + FFTN+ + K+ K
Sbjct: 736 YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 795
Query: 2310 KGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFFVQN*DI 2158
++ L EI I +I DKAP DG F+ DI
Sbjct: 796 S--TVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDI 844
Score = 92.0 bits (227), Expect(5) = 2e-63
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Frame = -3
Query: 2149 DMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRI 1970
D++L +K+FFE + SI++T + +IPK+ +PT + DY P NR+
Sbjct: 848 DVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRL 907
Query: 1969 KNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVM--KVDLRKAYDLIE 1796
K+ +N+IVS ++ AFI R I D+++ +HE++ + +K M K D+ KAYD +E
Sbjct: 908 KSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVE 967
Query: 1795 *CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL + + F K+I +M V SV YS++IN
Sbjct: 968 WDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLIN 1002
Score = 49.7 bits (117), Expect(5) = 2e-63
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFR-FHPKCKKQGIAHICFADYLLIYCKVE 1474
IRQ DP+SPYLFI+ + + + + R I H+ FAD L +C+
Sbjct: 1015 IRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQAN 1074
Query: 1473 IQSIKLL*ETFLIFSDVSGLKANIDKSFISM-SRVKEKLK*EILQTLD 1333
+++ + L + F ++ SG K N+ KS I+ SRV + + Q L+
Sbjct: 1075 VRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILE 1122
Score = 44.3 bits (103), Expect(5) = 2e-63
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = -3
Query: 1252 LVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFLW 1073
++++V + WSA+ L + +LKSV + Y F LPK I+ I+ + +F W
Sbjct: 1150 IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWW 1209
Query: 1072 TSSANLSKRAIVFWQSFVFQKLQG 1001
++N V W+ + K +G
Sbjct: 1210 EKASNQRGIPWVAWKRLQYSKKEG 1233
Score = 21.9 bits (45), Expect(5) = 2e-63
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -1
Query: 1017 SKSYRGQNILNLCLWNRVAILRQLWILAEKKDCL*IRCVHIYYLKGDSL 871
SK G +L +N + +Q W L + + L R + Y K S+
Sbjct: 1229 SKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSI 1277
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 122 bits (306), Expect(5) = 6e-62
Identities = 110/415 (26%), Positives = 183/415 (44%), Gaps = 7/415 (1%)
Frame = -1
Query: 3381 PNGR---IWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWS 3211
PNGR + L K++V+L +I++ E+ I V SF+ L+ VY H R +LW
Sbjct: 216 PNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFNNKSFY--LSCVYGHPTQSERHQLWQ 273
Query: 3210 DLGQLNITQ*V-WLLSGDFNVVLSTDDRLGSPMLPVES-KDFQDCFDNL*LTPLRSKGWH 3037
L ++ + WLL GDFN +LS +++G PM + ++F++ + + +RSKG
Sbjct: 274 TLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDR 333
Query: 3036 YTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQ 2857
+++ ++H V +D VF W + + +FL+ SDH P L +
Sbjct: 334 FSWVG-ERHTHTVKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFNESFPRRS 392
Query: 2856 KPFKLFITVLNHPDFKGIVRLVW--NKNYRGTKMFKL*AKLKELKVGLKDINTCMDFYE* 2683
K F+ +++ P FK IV+ W N+N R T + + + ++ LK + E
Sbjct: 393 KLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNS--EQ 450
Query: 2682 KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIASGD 2503
++ K+ L A++ + + K EE KS+ W+ GD
Sbjct: 451 RIKKLQSSL-----NRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGD 505
Query: 2502 ENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCPSS 2323
+NT YFHA K + ++N +++I DD T + FFTN+ + K+
Sbjct: 506 QNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDF 565
Query: 2322 IVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFFVQN*DI 2158
K ++ L EI I +I DKAP DG F+ DI
Sbjct: 566 ADFKS--TVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDI 618
Score = 92.0 bits (227), Expect(5) = 6e-62
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Frame = -3
Query: 2149 DMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRI 1970
D++L +K+FFE + SI++T + +IPK+ +PT + DY P NR+
Sbjct: 622 DVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRL 681
Query: 1969 KNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVM--KVDLRKAYDLIE 1796
K+ +N+IVS ++ AFI R I D+++ +HE++ + +K M K D+ KAYD +E
Sbjct: 682 KSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVE 741
Query: 1795 *CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL + + F K+I +M V SV YS++IN
Sbjct: 742 WDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLIN 776
Score = 50.1 bits (118), Expect(5) = 6e-62
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFR-FHPKCKKQGIAHICFADYLLIYCKVE 1474
IRQ DP+SPYLFI+ + + + + R I H+ FAD L +C+
Sbjct: 789 IRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQAN 848
Query: 1473 IQSIKLL*ETFLIFSDVSGLKANIDKSFISM-SRVKEKLK*EILQTLD 1333
+++ + L + F ++ SG K N+ KS I+ SRV + ++ Q L+
Sbjct: 849 VRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILE 896
Score = 44.3 bits (103), Expect(5) = 6e-62
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = -3
Query: 1252 LVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFLW 1073
++++V + WSA+ L + +LKSV + Y F LPK I+ I+ + +F W
Sbjct: 924 IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWW 983
Query: 1072 TSSANLSKRAIVFWQSFVFQKLQG 1001
++N V W+ + K +G
Sbjct: 984 EKASNQRGIPWVAWKRLQYSKKEG 1007
Score = 21.9 bits (45), Expect(5) = 6e-62
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -1
Query: 1017 SKSYRGQNILNLCLWNRVAILRQLWILAEKKDCL*IRCVHIYYLKGDSL 871
SK G +L +N + +Q W L + + L R + Y K S+
Sbjct: 1003 SKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSI 1051
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 141 bits (356), Expect(3) = 5e-60
Identities = 122/478 (25%), Positives = 211/478 (44%), Gaps = 16/478 (3%)
Frame = -1
Query: 3555 NVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYLMDPN 3376
N+RGLN +Q+ + ++ N + V LET V + + ++L GW NY
Sbjct: 7 NIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSEL 66
Query: 3375 GRIWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQL 3196
GRIW+ +++ V + +Q + ++ ++ + VY N R LW D+ L
Sbjct: 67 GRIWIVWDPSISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVL 126
Query: 3195 NITQ*V----WLLSGDFNVVLSTDDR--LGSPMLPVES-KDFQDCFDNL*LTPLRSKGWH 3037
+ T + WLL GDFN + + + + +L + +D Q C + L+ L S+G
Sbjct: 127 SRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVF 186
Query: 3036 YTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQ 2857
+T+ N QQ D + K+D +W + F P SDH+P + Q +
Sbjct: 187 FTWSNHQQ-DNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILIDNQPPPSK 245
Query: 2856 KPFKLFITVLNHPDFKGIVRLVWNKN-YRGTKMFKL*AKLKELKVGLKDINTC-MDFYE* 2683
K FK F + +HP + + W N G+ MF L LK K+ + +N +
Sbjct: 246 KSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQ 305
Query: 2682 KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKW---SLVEEQALIHKSKASWIA 2512
+ + + L Q ++ P D +W + E KS+ W+
Sbjct: 306 RTAQSLTRLEDIQVELLTSPSD----TLFRREHVARKQWIFFAAALESFFRQKSRIRWLH 361
Query: 2511 SGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPC 2332
GD NTR+FH + N I + D ++ ++ ++ I+++++L+G +E +
Sbjct: 362 EGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENV-T 420
Query: 2331 PSSIVIKKGPRLSCQQRCTLV*PIIT----QEI*TYIKEIPHDKAPSVDGFPVEFFVQ 2170
P S+ KG L + L + T +EI + +P +KAP DGFPVEFF++
Sbjct: 421 PFSVEKIKG-LLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIE 477
Score = 79.3 bits (194), Expect(3) = 5e-60
Identities = 44/156 (28%), Positives = 79/156 (50%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
++ ++ +++EFF G L + + TA+TLIPKV + + P +
Sbjct: 482 VKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIIS 541
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
R+K I+ V + FI+ R + +++L + EL+ + + + ++VD+ KAYD +
Sbjct: 542 RRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNV 601
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL ++L LD P FI + C+ S SYS+ N
Sbjct: 602 NWEFLINILKALDLPLVFIHWIWVCISSASYSIAFN 637
Score = 62.4 bits (150), Expect(3) = 5e-60
Identities = 63/269 (23%), Positives = 102/269 (37%), Gaps = 12/269 (4%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K IRQ DPMS +LF++ ++ + L + + N F HP C I H+ FAD +L++
Sbjct: 648 KGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDG 707
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
SI + F SGL N +K+ + + + L GSL RYL
Sbjct: 708 AASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLG 767
Query: 1296 VSLSLKNSQLPN-----------VCHWLRR*LKLSNVGQPNSYFILKDYNY*SLLCLVYK 1150
V L + + + W R L + Q I N+ + + +
Sbjct: 768 VPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIF-- 825
Query: 1149 HTGLRYLCCPNKL*K*LMLYANPFSGQVQLTCPR-ELLFFGKALSSKSYRGQNILNLCLW 973
PN+ + L N F R + + S K G + L W
Sbjct: 826 ---------PNQCLQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSW 876
Query: 972 NRVAILRQLWILAEKKDCL*IRCVHIYYL 886
NR+ L+ +W+L L + V ++ +
Sbjct: 877 NRILALKLIWLLFTSAGSLWVSWVRLHLI 905
Score = 67.8 bits (164), Expect = 5e-08
Identities = 29/90 (32%), Positives = 51/90 (56%)
Frame = -3
Query: 1255 PLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFL 1076
PLV+++ W+A+ L + RLQLLKSV++ +WA +F+ P ++ ++ +C +FL
Sbjct: 782 PLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQMCNAFL 841
Query: 1075 WTSSANLSKRAIVFWQSFVFQKLQGAKHLK 986
W+ + N ++ A + W K G LK
Sbjct: 842 WSGAPNSARGAKISWNIVCSPKEAGGLGLK 871
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 137 bits (344), Expect(4) = 5e-60
Identities = 120/475 (25%), Positives = 209/475 (44%), Gaps = 16/475 (3%)
Frame = -1
Query: 3546 GLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYLMDPNGRI 3367
GLN +Q+ + ++ N + V LET V + + ++L GW NY GRI
Sbjct: 53 GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112
Query: 3366 WLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQLNIT 3187
W+ +++ V + +Q + ++ ++ + VY N R LW D+ L+ T
Sbjct: 113 WIVWDPSISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSRT 172
Query: 3186 Q*V----WLLSGDFNVVLSTDDR--LGSPMLPVES-KDFQDCFDNL*LTPLRSKGWHYTF 3028
+ WLL GDFN + + + + +L + +D Q C + L+ L S+G +T+
Sbjct: 173 SPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFTW 232
Query: 3027 YNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQKPF 2848
N QQ D + K+D +W + F P SDH+P + Q +K F
Sbjct: 233 SNHQQ-DNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILIDNQPPPSKKSF 291
Query: 2847 KLFITVLNHPDFKGIVRLVWNKN-YRGTKMFKL*AKLKELKVGLKDINTC-MDFYE*KLH 2674
K F + +HP + + W +N G+ MF L LK K+ + +N + +
Sbjct: 292 KYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTA 351
Query: 2673 KVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKW---SLVEEQALIHKSKASWIASGD 2503
+ + L Q ++ P D +W + E KS+ W+ GD
Sbjct: 352 QSLTRLEDIQVELLTSPSD----TLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEGD 407
Query: 2502 ENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCPSS 2323
NTR+FH + N I + D ++ ++ ++ I+++++L+G +E + P S
Sbjct: 408 ANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENV-TPFS 466
Query: 2322 IVIKKGPRLSCQQRCTLV*PIIT----QEI*TYIKEIPHDKAPSVDGFPVEFFVQ 2170
+ KG L + L + T +EI + +P +KAP DGFPVEFF++
Sbjct: 467 VEKIKG-LLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIE 520
Score = 79.3 bits (194), Expect(4) = 5e-60
Identities = 44/156 (28%), Positives = 79/156 (50%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
++ ++ +++EFF G L + + TA+TLIPKV + + P +
Sbjct: 525 VKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIIS 584
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
R+K I+ V + FI+ R + +++L + EL+ + + + ++VD+ KAYD +
Sbjct: 585 RRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNV 644
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL ++L LD P FI + C+ S SYS+ N
Sbjct: 645 NWEFLINILKALDLPLVFIHWIWVCISSASYSIAFN 680
Score = 60.1 bits (144), Expect(4) = 5e-60
Identities = 39/123 (31%), Positives = 57/123 (46%)
Frame = -1
Query: 1656 KHIRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKV 1477
K IRQ DPMS +LF++ ++ + L + + N F HP C I H+ FAD +L++
Sbjct: 691 KGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDG 750
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
SI + F SGL N +K+ + + + L GSL RYL
Sbjct: 751 AASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLG 810
Query: 1296 VSL 1288
V L
Sbjct: 811 VPL 813
Score = 27.3 bits (59), Expect(4) = 5e-60
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 1255 PLVEKVTETIKCWSAKLLFYTERLQLL 1175
PLV+++ W+A+ L + RLQLL
Sbjct: 825 PLVDRINSRFTSWTARHLSFAGRLQLL 851
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 106 bits (265), Expect(4) = 5e-59
Identities = 127/504 (25%), Positives = 201/504 (39%), Gaps = 28/504 (5%)
Frame = -1
Query: 3567 IVTCNVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGWNTCCNYL 3388
I++ N+RGLN +K+ L + N GC+ V+E K EN+ ++ TC
Sbjct: 4 ILSWNIRGLNARMKRASLRKLIAINNP---GCVF--VQETKMENINARL---MRTCWK-- 53
Query: 3387 MDPNGRIWLF*KSHVTL---------QVITKKEQFIHYFVENLAIS-------FFNFLTV 3256
N W+F S + + IH +AIS F L
Sbjct: 54 --SNEIEWIFSPSRGSSGGILAIWDKNIFNANSNVIHQ--SWIAISGIFSTDQFECTLIT 109
Query: 3255 VYAHNEAHRRSKLWSDLGQL-NITQ*VWLLSGDFNVVLSTDDRLGSPMLPVESKDFQDCF 3079
VY E RS++W + + N LL GDFN VL +R DF+
Sbjct: 110 VYNPCEIAARSEVWKQIIEFQNSNPLPCLLVGDFNEVLRPSERGSLSFSHNGINDFKSFV 169
Query: 3078 DNL*LTPLRSKGWHYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHS 2899
L L + S YT+Y +D + +W+ +K+ L +SDH
Sbjct: 170 QELKLLEIPSSSRAYTWYRANSKSL-----LDRLLVSPEWVSHCPNIKVSILQRGLSDHC 224
Query: 2898 PALTQYLPQLILHQKPFKLFITVLNHPDFKGIVRLVWNKNYRGTKMFKL*AKLKELK--- 2728
P L Q KPF+ L P IV W+ + + + + KL K LK
Sbjct: 225 PLLVHSHIQE-WGPKPFRFNNCWLTDPKCMKIVEASWSSSPKISVVEKLKETKKRLKEWN 283
Query: 2727 --------VGLKDINTCMDFYE*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXIN 2572
++ + C+ ++ K E + + ++ + + QA
Sbjct: 284 LNEFGSIDANIRKLEDCIANFD----KEADERELDKEELEKRREAQADLW---------- 329
Query: 2571 KWSLVEEQALIHKSKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVE 2392
KW +E +S+ +W+ +GD+NT++FHA K+ +N ++ I D D ++
Sbjct: 330 KWMKRKEIYWAQRSRITWLKAGDKNTKFFHAIASNKKRKNMMACIETD-GQSTNDPSQIK 388
Query: 2391 KEFISFFTNLMGSEAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDK 2212
KE +FF + + K P ++ +K RLS Q +L+ P T+EI T + DK
Sbjct: 389 KEARAFFKKIFKEDHVKRPTLENLHLK---RLSQNQANSLITPFTTEEIDTAVSSCASDK 445
Query: 2211 APSVDGFPVEFFVQN*DIFKMICY 2140
AP DGF +F DI K Y
Sbjct: 446 APGPDGFNFKFVKSAWDIIKTDIY 469
Score = 84.0 bits (206), Expect(4) = 5e-59
Identities = 43/156 (27%), Positives = 90/156 (57%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I+ D+ + +F+E G L + + + LIPK+ +P+ +KDY P
Sbjct: 464 IKTDIYGIVNDFWETGCLPQGCNTAYIALIPKIDNPSSLKDYRPISMVGFIYKIVAKLLA 523
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
R+++VI++++S + ++++ R I+D L + E+++ ++++ A ++K+D KAYD +
Sbjct: 524 KRLQSVISSLISPLQSSYVKGRQILDGALVASEIIESCKKRNIEA-ILLKLDFHKAYDSV 582
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL+ L +++FP K+ + + CV S S S+++N
Sbjct: 583 SWNFLQWTLDQMNFPVKWCEWIKTCVTSASASILVN 618
Score = 61.6 bits (148), Expect(4) = 5e-59
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQG-IAHICFADYLLIYCKVE 1474
+RQ DP+SP+LF++ E + + + +R P C + I H+ +AD L++C+
Sbjct: 631 LRQGDPLSPFLFVLVGEVLSQMISKATSLQLWRGIPACSRGSEITHLQYADDTLMFCEAN 690
Query: 1473 IQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLSV 1294
S+K + +T +IF VSGL+ N KS + V E +L G++ F YL +
Sbjct: 691 TNSLKNIQKTLIIFQLVSGLQVNFHKSSLMGLNVTSSWIQEAANSLMCKIGTIPFSYLGL 750
Query: 1293 SL 1288
+
Sbjct: 751 PI 752
Score = 48.1 bits (113), Expect(4) = 5e-59
Identities = 23/85 (27%), Positives = 44/85 (51%)
Frame = -3
Query: 1255 PLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFL 1076
P+++K+ + + W KLL RL L+K+ + L Y+ +F +PK +++ I+ + ++FL
Sbjct: 764 PIIDKLEKKLASWKGKLLSLGGRLTLIKASLSNLPLYYMSLFPVPKGVIEKINKLMRAFL 823
Query: 1075 WTSSANLSKRAIVFWQSFVFQKLQG 1001
W ++V W K G
Sbjct: 824 WCGDFGKRPFSMVSWSIVQQPKTSG 848
>emb|CCA65974.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1379
Score = 99.4 bits (246), Expect(4) = 2e-58
Identities = 112/478 (23%), Positives = 205/478 (42%), Gaps = 15/478 (3%)
Frame = -1
Query: 3567 IVTCNVRGLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSE---NMLKKVELGWNTCC 3397
+++ N+RGL +K+ + ++K+ D ET+++ E M K ++ W T
Sbjct: 3 VLSWNIRGLTARVKRSAIRKLIQKHTPDFVFVQETKMEGISLEIVKTMWKSQDVEW-TWY 61
Query: 3396 NYLMDPNGRIWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKL 3217
+ + G I ++ KS +++ + + +I I+F L VY N R+ +
Sbjct: 62 PSVGNSGGLISMWNKSAFSMKSSSVNQHWIAISGSFSRINFECILFNVYNPNTVGARASV 121
Query: 3216 WSDLGQLNITQ*V-WLLSGDFNVVLSTDDRLGSPMLPVESKDFQDCFDNL*LTPLRSKGW 3040
W ++ + T + LL GDFN L DDR + + +F++ + L +
Sbjct: 122 WEEIVTFHKTNPLPSLLIGDFNETLEPDDRGSLLFSNIGTDNFKNFLQVMELLEVSPSNK 181
Query: 3039 HYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILH 2860
+T++ R + +D + +WI E+ +++ L +SDH P LT Q
Sbjct: 182 GFTWFRG-----RSKSVLDRLLLNPEWINEFPSMRLSLLQRGLSDHCPLLTNIHTQN-WG 235
Query: 2859 QKPFKLFITVLNHPDFKGIVRLVWNKNYRGTKMFKL*AKLKELKVGLK--------DINT 2704
KPF+ L P IV W ++ T M + KL+ +K+ LK I+T
Sbjct: 236 PKPFRFQNCWLTDPHCLEIVNKTWLES---TNMPMI-DKLRRVKIRLKAWNRDEFGHIDT 291
Query: 2703 CMDFYE*KLHK---VIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHK 2533
+ E ++ K + E + + ++ + + Q+ W +E
Sbjct: 292 NIKIMEDEIQKFDTISNERELDEQEIERRKEAQSDLWM----------WMKRKELYWAQN 341
Query: 2532 SKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGS 2353
S+ W+ GD NT++FH K+ RN I+SI + +I +++E ++FF +
Sbjct: 342 SRILWLKHGDRNTKFFHMVASNKKRRNFIASIKVN-GRRIEKPNQIKEEAVTFFKEIFTE 400
Query: 2352 EAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEF 2179
E + P + +LS Q +L+ P +EI + DKAP DGF +F
Sbjct: 401 EFTERPTLEGLQFN---QLSQNQADSLIQPFSDEEIDYAVNSCASDKAPGPDGFNFKF 455
Score = 89.4 bits (220), Expect(4) = 2e-58
Identities = 49/156 (31%), Positives = 87/156 (55%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I++D+ ++EF+ KL K + T +TLIPK+ +P KD+ P
Sbjct: 463 IKEDVYTLVREFWATSKLPKGSNSTFITLIPKIDNPENFKDFRPISMVGCVYKIIAKLMA 522
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
RI+ V+++++ + +++E R I+D L + E++ RK + A ++K+D KAYD +
Sbjct: 523 KRIQRVMSSLIGPLQSSYVEGRQILDGALVASEVIDLCKRKKMEA-ILLKLDFHKAYDSV 581
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL+ L ++ FP ++ + VM CV S S S++IN
Sbjct: 582 SWSFLQWTLAQMKFPPQWCKWVMACVASASASILIN 617
Score = 55.5 bits (132), Expect(4) = 2e-58
Identities = 26/89 (29%), Positives = 49/89 (55%)
Frame = -3
Query: 1255 PLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFL 1076
P++EK+ E + W +K+L RL L+KS + L Y+ +F +PK +++ I+++ + FL
Sbjct: 763 PVIEKLCEKLAMWKSKMLSIGGRLTLIKSSLASLPLYFMSLFPIPKGVVEKINMITRRFL 822
Query: 1075 WTSSANLSKRAIVFWQSFVFQKLQGAKHL 989
W+ A V W+ K +G ++
Sbjct: 823 WSGCAEKKTLPPVSWKVVQLPKSRGGLNI 851
Score = 54.7 bits (130), Expect(4) = 2e-58
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQG--IAHICFADYLLIYCKV 1477
+RQ DP+SP+LF+I E ++ ++ ++ + +R + + G I+H+ +AD L++
Sbjct: 630 LRQGDPLSPFLFVIIGEALNQLIIKATRLNLWR-GIETSRDGPMISHLQYADDTLVFSDT 688
Query: 1476 EIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLS 1297
S+K + T ++F VSGL+ N KS + + + L GS+ F YL
Sbjct: 689 STDSLKSIKSTLILFQLVSGLQVNFHKSSLIGLNISDARANNAANLLQCKVGSIPFTYLG 748
Query: 1296 VSLSLKNSQL 1267
+ + S++
Sbjct: 749 LPIGGNPSRI 758
>emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 117 bits (292), Expect(4) = 6e-58
Identities = 102/381 (26%), Positives = 179/381 (46%), Gaps = 5/381 (1%)
Frame = -1
Query: 3279 SFFNFLTV-VYAHNEAHRRSKLWSDLGQL-NITQ*VWLLSGDFNVVLSTDDRLGSPMLPV 3106
S FN L + +Y + R + W+ L + + + L++GDFN VLS+ DR +
Sbjct: 100 SDFNCLLINIYNSCDDVIREETWNSLFEFCSNSNLPCLIAGDFNEVLSSKDRGSHQIDES 159
Query: 3105 ESKDFQDCFDNL*LTPLRS-KGWHYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKID 2929
S F++ +NL L + +GW+ F + +K+D V +WI+++ + +
Sbjct: 160 SSLKFRNFINNLRLIEVSPVEGWYTWFRGNSR------SKLDRVLVQAEWIEKFPALAVS 213
Query: 2928 FLNPKMSDHSPALTQYLPQLILHQKPFKLFITVLNHPDFKGIVRLVWNKNYRGTKMFKL* 2749
LN +SDH P L Q + +PFK L+H IV W ++ T M
Sbjct: 214 ILNRSISDHCPLLLQS-SIVDWGPRPFKFQDVWLSHKGCMEIVEKAWIQSKELTLM---- 268
Query: 2748 AKLKELKVGLKDINTCMDFYE*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINK 2569
KLK++K+ LK N+ F + +++E I + +D +
Sbjct: 269 QKLKKVKLDLKTWNS-ESFGNIDANILLREAEIQKWDSEANSRDLEPEEIKTRAQAQLEL 327
Query: 2568 WSLVEEQALI--HKSKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLV 2395
W ++++ + +S+ W+ SGD NT++FH I+ ++NNISSI KI D +++
Sbjct: 328 WEWLKKKEIYWAQQSRIKWLKSGDRNTKFFHICASIRRSKNNISSILLQ-GKKIEDPIII 386
Query: 2394 EKEFISFFTNLMGSEAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPHD 2215
++E + +F NL + ++ P +++ KK LS Q ++ P T EI +
Sbjct: 387 KEEAVKYFKNLFTEDFKERPTFTNLSFKK---LSESQAFSISAPFSTTEIDEAVASCNPS 443
Query: 2214 KAPSVDGFPVEFFVQN*DIFK 2152
K+P DGF +F + D+ K
Sbjct: 444 KSPGPDGFNFKFIKASWDLIK 464
Score = 79.0 bits (193), Expect(4) = 6e-58
Identities = 47/156 (30%), Positives = 81/156 (51%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I+ D ++EF+ G L + + + LI K+ SP+ KD+ P
Sbjct: 463 IKHDFYSIIQEFWHTGILPRGSNVAFIALIAKIESPSGFKDFRPISMVGCVYKIISKLLA 522
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLI 1799
R+K V+N +V + +FIE R I+DSIL + EL + R+ A ++K+D KA+D +
Sbjct: 523 GRLKQVMNDLVGPHQSSFIEGRQILDSILIASELFESCKRRK-KATVMLKIDFHKAFDSV 581
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
FL L ++ FP ++ + + CV S + S+++N
Sbjct: 582 SWSFLDWTLSQMGFPPRWKKWISSCVSSAAASVLLN 617
Score = 54.3 bits (129), Expect(4) = 6e-58
Identities = 24/89 (26%), Positives = 47/89 (52%)
Frame = -3
Query: 1255 PLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFL 1076
PL+EK+++ + W LL RL L+K+ + L Y+ +F +P+ ++ I + ++FL
Sbjct: 763 PLIEKISKKLSLWKGNLLSLGGRLTLIKASLLNLPIYYMSLFPMPQGVIDKITRIQRNFL 822
Query: 1075 WTSSANLSKRAIVFWQSFVFQKLQGAKHL 989
W+ N A++ W K+ G ++
Sbjct: 823 WSGGLNKKSLALIKWSYAQLPKIFGGLNI 851
Score = 46.6 bits (109), Expect(4) = 6e-58
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHP-KCKKQG--IAHICFADYLLIYCK 1480
+RQ DP+SP+LF++ +E + L++ S + + K G + H+ FAD +++
Sbjct: 630 LRQGDPLSPFLFVLVVEVMN--LMIKKAESLNSWQGIEITKNGPILTHLQFADDTILFAP 687
Query: 1479 VEIQSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYL 1300
+++++ + +T ++F SGLK N KS + V + + L GS YL
Sbjct: 688 HNMEALENIKKTLILFQLSSGLKINFHKSELLGINVPQDWMQRAAKNLCCKVGSFPITYL 747
Query: 1299 SVSLSLKNSQL 1267
+ + S+L
Sbjct: 748 GMPVGGSCSKL 758
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 128 bits (321), Expect(2) = 1e-57
Identities = 105/374 (28%), Positives = 166/374 (44%), Gaps = 11/374 (2%)
Frame = -1
Query: 3264 LTVVYAHNEAHRRSKLWSDLGQLNITQ*----VWLLSGDFNVVLSTDDRLGSPMLPVES- 3100
+++VYA NEA R +LW +L L+++ W++ GDFN VL + + L V
Sbjct: 55 VSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRR 114
Query: 3099 -KDFQDCFDNL*LTPLRSKGWHYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQVKIDFL 2923
K F+DC L L KG +T++NK V K+D + W + F
Sbjct: 115 MKVFRDCLFEAELCDLVFKGNTFTWWNKSATR-PVAKKLDRILVNESWCSRFPSAYAVFG 173
Query: 2922 NPKMSDHSPALTQYLPQLILHQKPFKLFITVLNHPDFKGIVRLVWNK-NYRGTKMFKL*A 2746
P SDH+ P + ++PF+ + +L +PDF +V +W N G+ MFK+
Sbjct: 174 EPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSK 233
Query: 2745 KLKELKVGLKDINTCMDFYE*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKW 2566
KLK LK ++ + M+ + L K ++E + + KW
Sbjct: 234 KLKALKNPIRTFS--MENFS-NLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRKW 290
Query: 2565 SLV---EEQALIHKSKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLV 2395
++ EE +S+ +W+ GD NT YFH ++ N I I DD KI + +
Sbjct: 291 LILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGI 350
Query: 2394 EKEFISFFTNLMGSE-AEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEIPH 2218
++ I +F+NL+G E + + R S Q+ L Q+I + P
Sbjct: 351 KEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFPS 410
Query: 2217 DKAPSVDGFPVEFF 2176
+K DGFPVEFF
Sbjct: 411 NKTSGPDGFPVEFF 424
Score = 126 bits (316), Expect(2) = 1e-57
Identities = 97/393 (24%), Positives = 180/393 (45%), Gaps = 9/393 (2%)
Frame = -3
Query: 2137 SLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT----NRI 1970
++ EFF LLK + T + LIPK+ + + + D+ P NR+
Sbjct: 438 AVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRL 497
Query: 1969 KNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*C 1790
+ +++ ++S + AF+ R + +++L + EL++ YNR+++ + ++KVDLRKA+D I
Sbjct: 498 QCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWD 557
Query: 1789 FLRSMLVELDFPFKFIQRVMKCVISVSYSLVI--NKRGCLLSMLEVKTYKAE*SYVTLPF 1616
F+ S L + P +F+ + +C+ + ++S+ + N G S ++ ++ F
Sbjct: 558 FIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFL---F 614
Query: 1615 YHCYRVFS*IVGCLVSKF*VQISPKM*KTGDCPYLFC*LSSYIL*G*DSIYKTALRDLSD 1436
VFS ++ + PK +F G S +L +S+
Sbjct: 615 VLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGSS----SLHGISE 670
Query: 1435 ILRCVWVESQY---RQEFHFYV*GKGKVKIRNSSNSRFL*GLPSF*IP*CLTFLKKLTIT 1265
L S R++ H Y+ G +++ T +KL I
Sbjct: 671 ALEDFAFWSGLVLNREKTHLYLAGLDRIEAS--------------------TIARKLRIA 710
Query: 1264 QCLPLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCK 1085
+ PL+EK+ + + WS K L + R+QL+ SV+ G+ +W F+LPK +K I+ +C
Sbjct: 711 EYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCA 770
Query: 1084 SFLWTSSANLSKRAIVFWQSFVFQKLQGAKHLK 986
FLW+ + ++ K A V W K +G L+
Sbjct: 771 RFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLR 803
>ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660513 [Glycine max]
Length = 543
Score = 194 bits (492), Expect(2) = 1e-57
Identities = 136/444 (30%), Positives = 219/444 (49%), Gaps = 4/444 (0%)
Frame = -1
Query: 3471 LETRVKEHKSENMLKKVELGWNTCCNYLMDPNGRIWLF*KSHVT-LQVITKKEQFIHYFV 3295
LE RVK +K+ N+ K++L NY+ NGRIW++ ++ +Q + Q IH V
Sbjct: 2 LEIRVKNNKAGNVRDKLKLKGKYLDNYVKHNNGRIWVYWDDNIVDIQEVNCTAQLIHCKV 61
Query: 3294 ENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQLNITQ*-VWLLSGDFNVVLSTDDRLGSP 3118
+ F +LT +Y N + + LW DL +N TQ W L GDFN VL T+DR+G
Sbjct: 62 YDATGYFMQWLTAIYGFNYLEQCTDLWHDLEAINKTQQGPWCLIGDFNNVLKTNDRVGGK 121
Query: 3117 ML-PVESKDFQDCFDNL*LTPLRSKGWHYTFYNKQQHDCRVYTKIDWVFRIFKWIQEYSQ 2941
M+ E KD + DN L + SKG +YT+ NKQ + +Y++ID + +W +
Sbjct: 122 MVCEKEYKDLRTMMDNTGLAEMDSKGDYYTWSNKQSENI-IYSRIDRILGNTEWFSKNLN 180
Query: 2940 VKIDFLNPKMSDHSPALTQYLPQLILHQKPFKLFITVLNHPDFKGIVRLVWNKNYRGTKM 2761
+ + + P +SDH+ + + + FK V +F V WN RG
Sbjct: 181 LSLTNMTPGISDHAMLCLRDDSVPVKRKARFKYANCVSGMDNFTETVANSWNSARRGGPP 240
Query: 2760 FK-L*AKLKELKVGLKDINTCMDFYE*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXX 2584
K L KLK+L+ + +++ + + KL + ++L Q ++ L ++
Sbjct: 241 MKMLWHKLKKLQPVINNLSKPLIGIKVKLQEAREKLTHAQMELTLDRLNKDKIDRTNDCT 300
Query: 2583 XXINKWSLVEEQALIHKSKASWIASGDENTRYFHA*CKIKENRNNISSICDDVSNKITDL 2404
+ KW+ +EEQ L ++K W+ GD N YFHA K K N+ +I + + N +T
Sbjct: 301 EAVIKWTEMEEQMLQQRAKIRWLRLGDGNNAYFHASLKAKYNQTSIKKLYMNDGNFVTTQ 360
Query: 2403 VLVEKEFISFFTNLMGSEAEKIPCPSSIVIKKGPRLSCQQRCTLV*PIITQEI*TYIKEI 2224
+E E + F+ +LMG E + +++KG +L+ QR L+ I +EI +K I
Sbjct: 361 KEIEDEIMRFYGDLMGREEPNLDSVDINIMRKGCQLNFDQRKYLIGRITDEEIDKALKSI 420
Query: 2223 PHDKAPSVDGFPVEFFVQN*DIFK 2152
KAP +DG+ +FF I K
Sbjct: 421 GDLKAPGIDGYGAKFFKDAWSIIK 444
Score = 60.1 bits (144), Expect(2) = 1e-57
Identities = 34/101 (33%), Positives = 53/101 (52%)
Frame = -3
Query: 2158 IQDDMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXT 1979
I+ D +++EFFE GK+ + I+ + V LIPK +DY P T
Sbjct: 443 IKSDFTDAIREFFEKGKMYEPINTSLVILIPKNQEAKYARDYRPISCCTTIYKVISKVLT 502
Query: 1978 NRIKNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRK 1856
R+ VI +IV ++ AF+ + I D IL ++EL++ Y RK
Sbjct: 503 TRLSRVIKSIVHQSQAAFVPGQKIHDQILLAYELIQGYERK 543
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 97.8 bits (242), Expect(5) = 3e-56
Identities = 120/468 (25%), Positives = 186/468 (39%), Gaps = 11/468 (2%)
Frame = -1
Query: 3546 GLNHPLKQKELVLFLKKNKVDVFGCLETRVKEHKSENMLKKVELGW-NTCCNYLMDPNGR 3370
G+ PL Q +L K K DV +ET K N+ LG+ N +G
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASV--LGFPNVITQPPQGHSGG 448
Query: 3369 IWLF*KSHVTLQVITKKEQFIHYFVENLAISFFNFLTVVYAHNEAHRRSKLWSDLGQLNI 3190
+ L K V L + + ++ I + I+F+ L+ VY H R LW+ L+
Sbjct: 449 LALLWKDSVRLSNLYQDDRHIDVHISINNINFY--LSRVYGHPCQSERHSLWTHFENLSK 506
Query: 3189 TQ*-VWLLSGDFNVVLSTDDRLGSPMLPVES-KDFQDCFDNL*LTPLRSKGWHYTFYNKQ 3016
T+ W+L GDFN +LS ++++G P + + F++ L +RS G +++ +
Sbjct: 507 TRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVG-E 565
Query: 3015 QHDCRVYTKIDWVFRIFKWIQEYSQVKIDFLNPKMSDHSPALTQYLPQLILHQKPFKLFI 2836
+H V +D F + + +++FL SDH P +PF+
Sbjct: 566 RHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDK 625
Query: 2835 TVLNHPDFKGIVRLVWNKNYRGTKMFKL*AKLKELKVGLKDINTCMDFYE*KLHK--VIQ 2662
+L P FK V+ WNK G + K L + TC HK +
Sbjct: 626 RLLEVPHFKTYVKAGWNKAINGQR--------KHLP---DQVRTCRQAMAKLKHKSNLNS 674
Query: 2661 ELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLV----EEQALIHKSKASWIASGDENT 2494
+ I Q Q AL + I + V EE+ KS+ W+ GD NT
Sbjct: 675 RIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNT 734
Query: 2493 RYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPCPSSIVI 2314
+FHA K + + N + +I D+ + FFT + S P SI+
Sbjct: 735 EFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGR----PVSIID 790
Query: 2313 KKG--PRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFF 2176
G P ++ Q L + EI I I DKAP DG F+
Sbjct: 791 FAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFY 838
Score = 79.7 bits (195), Expect(5) = 3e-56
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Frame = -3
Query: 2149 DMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRI 1970
D++ +K FF + +SI++T + +IPK+ +P + DY P R+
Sbjct: 848 DVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERL 907
Query: 1969 KNVINTIVSHTKYAFIERRNIIDSILFSHEL---LK*YNRKSLSAKCVMKVDLRKAYDLI 1799
K ++ IVS ++ AFI R + D+++ +HE+ LK R S S V K D+ KAYD +
Sbjct: 908 KGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAV-KTDVSKAYDRV 966
Query: 1798 E*CFLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN 1691
E FL + + F +I+ +M V SV+YS+++N
Sbjct: 967 EWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVN 1002
Score = 49.7 bits (117), Expect(5) = 3e-56
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFR-FHPKCKKQGIAHICFADYLLIYCKVE 1474
IRQ DP+SPYLFI+ + + + R G+ H+ FAD L +C+
Sbjct: 1015 IRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSN 1074
Query: 1473 IQSIKLL*ETFLIFSDVSGLKANIDKSFISM-SRV 1372
+++ + L + F ++ SG K N+ KS I+ SRV
Sbjct: 1075 VRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1109
Score = 43.9 bits (102), Expect(5) = 3e-56
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = -3
Query: 1252 LVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKIIDVVCKSFLW 1073
++E+V + WSAK L + +LKSV + Y F LP I+ I+ + +F W
Sbjct: 1150 IIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW 1209
Query: 1072 TSSANLSKRAIVFWQSFVFQKLQG 1001
+A + + W+ + K +G
Sbjct: 1210 EKNAKKREIPWIAWKRLQYSKKEG 1233
Score = 40.0 bits (92), Expect(5) = 3e-56
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 19/198 (9%)
Frame = -1
Query: 1017 SKSYRGQNILNLCLWNRVAILRQLWILAEKKDCL*IRCVHIYYLKGDS-LDSRNISENAK 841
SK G +L +N + +Q+W + + L R + Y + DS LD++ +
Sbjct: 1229 SKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSY 1288
Query: 840 *VVRKIVETRKYVLQALSLQGD------------LITRLNSMVTDTKFSIHKMYLALLPQ 697
+ + + GD LI++L S D + +L+ +
Sbjct: 1289 GWTSMLAGLDVIKKGSRFIVGDGKTGSYRYWNAHLISQLVS--PDDHRFVMNHHLSRIVH 1346
Query: 696 HSKVTWRSIN------LQAGIYPRHKFITCLAIVNRLPTVDGLAKIGL*VPPTCVFCALF 535
K+ W + + I P+ K++ I LPT L G+ + P C C
Sbjct: 1347 QDKLVWNYSSSGDYTLWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTE 1406
Query: 534 DETLAHLFFECCIVQDIW 481
+ET+ H+ F C IW
Sbjct: 1407 EETINHVLFTCPYAASIW 1424
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 90.9 bits (224), Expect(4) = 1e-54
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Frame = -3
Query: 2149 DMLLSLKEFFEYGKLLKSISYTAVTLIPKVPSPTMVKDYMPXXXXXXXXXXXXXXXTNRI 1970
D + +++ FF G L K ++ T + LIPK +KDY P NR+
Sbjct: 788 DFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRL 847
Query: 1969 KNVINTIVSHTKYAFIERRNIIDSILFSHELLK*YNRKSLSAKCVMKVDLRKAYDLIE*C 1790
K ++ + + + AF++ R +++++L + EL+K Y+++S++ +C MK+D+ KA+D ++
Sbjct: 848 KLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQ 907
Query: 1789 FLRSMLVELDFPFKFIQRVMKCVISVSYSLVIN-------------KRGCLLS 1670
FL + L L+FP F + C+ + ++S+ +N ++GC LS
Sbjct: 908 FLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALS 960
Score = 74.7 bits (182), Expect(4) = 1e-54
Identities = 40/124 (32%), Positives = 67/124 (54%)
Frame = -1
Query: 1650 IRQSDPMSPYLFIIAIEYFHR*LVVLSQNSKFRFHPKCKKQGIAHICFADYLLIYCKVEI 1471
+RQ +SPYLF+I + + + + +HPKC+K G+ H+CFAD L+++
Sbjct: 953 LRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQ 1012
Query: 1470 QSIKLL*ETFLIFSDVSGLKANIDKSFISMSRVKEKLK*EILQTLDFCEGSLHFRYLSVS 1291
SI+ + F F+ SGL+ +++KS I ++ V + + L + F G L RYL +
Sbjct: 1013 WSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLP 1072
Query: 1290 LSLK 1279
L K
Sbjct: 1073 LLTK 1076
Score = 65.9 bits (159), Expect(4) = 1e-54
Identities = 32/99 (32%), Positives = 51/99 (51%)
Frame = -3
Query: 1282 KKLTITQCLPLVEKVTETIKCWSAKLLFYTERLQLLKSVVFGLQTYWAQIFVLPK*IMKI 1103
K++T PL+E V I W+A+ L Y RL LL SV+ + +W + LP ++
Sbjct: 1076 KQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIRE 1135
Query: 1102 IDVVCKSFLWTSSANLSKRAIVFWQSFVFQKLQGAKHLK 986
I+ +C +FLW+ K+A + W S K +G +K
Sbjct: 1136 IEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIK 1174
Score = 53.9 bits (128), Expect(4) = 1e-54
Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 6/234 (2%)
Frame = -1
Query: 2859 QKPFKLFITVLNHPDFKGIVRLVWNKN---YRGTK-MFKL*AKLKELKVGLKDINTCMDF 2692
+KPFK + P F +V W + Y T +++ KLK LK L+++
Sbjct: 545 RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLG 604
Query: 2691 YE*KLHKVIQELYITQSQMALQPQDQAXXXXXXXXXXXINKWSLVEEQALIHKSKASWIA 2512
K + L + L Q S +EE L KSK W+
Sbjct: 605 DLPKRTREAHILLCEKQATTLANPSQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWMN 664
Query: 2511 SGDENTRYFHA*CKIKENRNNISSICDDVSNKITDLVLVEKEFISFFTNLMGSEAEKIPC 2332
GD N YFH ++++ RN+I I + + ++ E FF + ++
Sbjct: 665 VGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHG 724
Query: 2331 PSSIVIKK--GPRLSCQQRCTLV*PIITQEI*TYIKEIPHDKAPSVDGFPVEFF 2176
S ++ R S + L + +EI + +P++K+P DG+ EFF
Sbjct: 725 ISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFF 778