BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00008707
         (3937 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   569   e-166
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   571   e-160
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   566   e-158
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       566   e-158
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   526   e-146
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   518   e-144
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           518   e-144
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   516   e-143
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   511   e-141
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   496   e-137
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   493   e-136
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              450   e-123
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   442   e-121
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   438   e-120
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   438   e-120
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga...   432   e-118
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               428   e-117
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga...   427   e-116
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   426   e-116
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   414   e-112

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  569 bits (1466), Expect(2) = e-166
 Identities = 318/946 (33%), Positives = 507/946 (53%), Gaps = 15/946 (1%)
 Frame = +3

Query: 771  MIVACWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDN 950
            M +  WNVRGL+  +K  E+   +  + I L ++ E+++  +   +        W  ++N
Sbjct: 1    MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINN 60

Query: 951  FSTHLAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGL 1130
            ++    GRI++ W    +      +  Q I  EV      N F ++ VYGLH+I  R+ L
Sbjct: 61   YACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVL 120

Query: 1131 WSSIRSYGTSINHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTG 1310
            W  + ++ +  + P +++GD+N+V   Q+R N   ++  +T DL     +  L++ P+TG
Sbjct: 121  WEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTG 180

Query: 1311 CKLTYTV----ADK-KSKLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPR 1475
               ++      AD+  S++D++ VN  W          ++  G +SDHSP I ++     
Sbjct: 181  LFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAG-ISDHSPLIFNLATQHD 239

Query: 1476 PRNRPFKFFNMWASNPEFGNIVATAWEQSVAGTAQFSXXXXXXXXXXXXXXXNEREYSHI 1655
               RPFKF N  A    F  +V  AW  +       +               + +++S  
Sbjct: 240  EGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSKA 299

Query: 1656 SSRVKRAKDELERAQQ----DAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSE 1823
              +V+  + +L   Q           Q+ +K  +A   +  T+     + S L+Q ++ +
Sbjct: 300  HCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTI-----DESILKQKSRIQ 354

Query: 1824 HLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDF- 2000
             L   D  +KFF   +K    RN I  +    G   T   ++  E  ++YR LLGT    
Sbjct: 355  WLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQ 414

Query: 2001 CEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWD 2180
             E ID+ V+  G +LS+    +L++ +T  EI  AL DI + KAPG DG++S FFKKSW 
Sbjct: 415  LEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWL 474

Query: 2181 IVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKII 2360
            ++  E  + + +FF +G + K IN T + L+PK        D+RPI+CC+ +YK+I+KI+
Sbjct: 475  VIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKIL 534

Query: 2361 AARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDS 2540
              R++  +  ++D AQ+ FI  R + +NI LA EL+RGYN + +S RC++KVD+RKA+DS
Sbjct: 535  TKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDS 594

Query: 2541 VDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYL 2720
            V+W FL S L  L FP  F   IM CV + SYS+ LNG     F  QKGLRQGDPLSP+L
Sbjct: 595  VEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFL 654

Query: 2721 FVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQ 2900
            F + +EYLSR +        FN+HPKC  +++THL FADDLL+ +R D +S+  IM    
Sbjct: 655  FALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFN 714

Query: 2901 NFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHY 3080
            +F   SGL+++  KS +Y  G+ +++   + +     IGS+PFRYLG+PLA++KL     
Sbjct: 715  SFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQC 774

Query: 3081 EPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNF 3260
            +P +DKI T    W    LSYAGR +L+K++L  ++ +W  I P+P  +   + + CR F
Sbjct: 775  KPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKF 834

Query: 3261 LW-----QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWI 3425
            LW      S    V+W      K+ GGL   +M  WN + + K LW I  K D LW++W+
Sbjct: 835  LWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWV 894

Query: 3426 HQKYLSSGSVWTWKVRKEDSPLIRRILEIRDQILTQSGSQEQAITN 3563
            +  Y+   ++    V    S ++R+I E R ++LT++G  E A++N
Sbjct: 895  NAYYIKRQNIENVTVSSNTSWILRKIFESR-ELLTRTGGWE-AVSN 938



 Score = 45.8 bits (107), Expect(2) = e-166
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = +1

Query: 3637 WLCIKKRLRTKDMVPYM--DIDKVCILCNTQDESSAHLFFKCTVSNYLWNRTRCWLGITR 3810
            WL +  RL T + V     D+  +C +C  + E+  HLFF C  S  +W +   +L + +
Sbjct: 978  WLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNCIYSKEIWGKVLLYLNL-Q 1036

Query: 3811 EMSTIDSALKFIRKEGRGTGWQARAKRIALGSVVYHIWNERN 3936
              +   +  +   K+ R T  + +   +     VY IW  RN
Sbjct: 1037 PQADAQAKKELAIKKARSTKDRNKLYVMMFTESVYAIWLLRN 1078


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  571 bits (1472), Expect = e-160
 Identities = 326/939 (34%), Positives = 506/939 (53%), Gaps = 21/939 (2%)
 Frame = +3

Query: 771  MIVACWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDN 950
            M+   WNVRG++   K  EI + +    I + A+LE+++  +  ++      + WK ++N
Sbjct: 1    MLCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNN 60

Query: 951  FSTHLAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIV--YGLHSIVARR 1124
            +S     RI+I W PA +    +    Q +     C I   S  + +V  YGLH+I  R+
Sbjct: 61   YSHSARERIWIGWRPAWVNVTLTHTQEQLM----VCDIQDQSHKLKMVAVYGLHTIADRK 116

Query: 1125 GLWSSIRSYGTSINHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPS 1304
             LWS +         P +I+GDFN+V    +R     +T  +T+D      +  L++  S
Sbjct: 117  SLWSGLLQC-VQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRS 175

Query: 1305 TGCKLTYTVAD-----KKSKLDRAMVNGQWSQAEWLG-HANFK---LPGHLSDHSPCIVS 1457
            T    +++ +        S++D+A VN       WLG +A      LP  +SDHSP + +
Sbjct: 176  TWSYYSWSNSSIGRDRVLSRIDKAYVN-----LVWLGMYAEVSVQYLPPGISDHSPLLFN 230

Query: 1458 IIEAPRPRNRPFKFFNMWASNPEFGNIVATAWEQSVAGTAQFSXXXXXXXXXXXXXXXNE 1637
            ++       +PFKF N+ A   EF   V  AW  SV G  +                  +
Sbjct: 231  LMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWN-SVNGRFKLQAIWLNLKAVKRELKQMK 289

Query: 1638 REYSHIS-SRVKRAKDELERAQ-QDAFDHPQDSQK--QELATTLRHKTVAICEAELSFLR 1805
             +   ++  +VK  + +L+  Q QD FDH    Q   + +   LRH +      E S L+
Sbjct: 290  TQKIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQTDAKSIMNDLRHWS----HIEDSILQ 345

Query: 1806 QLAKSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLL 1985
            Q ++   L+  D  +K F   VK     N I  +   DG +     +V  E   +Y+ LL
Sbjct: 346  QKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLL 405

Query: 1986 GTK-DFCEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGF 2162
            GT+      +D++ +  G  LS++  E L+REV + EI  AL  IG DKAPG DG+++ F
Sbjct: 406  GTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYF 465

Query: 2163 FKKSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYK 2342
            FKKSW  +  E    ++EFF + ++ + IN  ++ L+PK  H   V +FRPI+CC VIYK
Sbjct: 466  FKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYK 525

Query: 2343 VITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDL 2522
            +I+K++  R++  +  +++ AQS FI GR + +NI LA EL+RGY  K +S RCI+KVD+
Sbjct: 526  IISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDI 585

Query: 2523 RKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGD 2702
            RKA+DSV+W FL + L    FP +F   IMECVS+ SYSV +NG     F+ +KGLRQGD
Sbjct: 586  RKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGD 645

Query: 2703 PLSPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRI 2882
            P+SP+LF +C+EYLSR L +      FN+HPKC  L ITHL FADDLL+  R D +S+  
Sbjct: 646  PMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDH 705

Query: 2883 IMDCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEK 3062
            +    Q F + SGL ++  KS++Y  G+ ++   ++ +  + ++G +PFRYLG+PL ++K
Sbjct: 706  MNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKK 765

Query: 3063 LRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKIT 3242
            L     +P V+ I      W    LSYAGR +LIKS+L  ++ +W  I P+   +   + 
Sbjct: 766  LTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVE 825

Query: 3243 SLCRNFLW-----QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDT 3407
             +CR FLW     ++K   V+W      K+ GG    +MK WN + + K LW I  K D 
Sbjct: 826  KVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDK 885

Query: 3408 LWIQWIHQKYLSSGSVWTWKVRKEDSPLIRRILEIRDQI 3524
            LW++WIH  Y+    + T  +  + + ++R+I++ RD +
Sbjct: 886  LWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDHL 924


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  566 bits (1459), Expect = e-158
 Identities = 334/926 (36%), Positives = 482/926 (52%), Gaps = 16/926 (1%)
 Frame = +3

Query: 786  WNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFSTHL 965
            WNVRG + S+++       +       +ILE+++      R   + F  WK V N+    
Sbjct: 7    WNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFAA 66

Query: 966  AGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSIR 1145
             GRI+++W+PA      S+   Q I   V     S  F ++ VY ++    RR LWS + 
Sbjct: 67   LGRIWVVWDPAVEVTVLSK-SDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSELE 125

Query: 1146 SYG---TSINHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTGCK 1316
                  T+ + PW+I+GDFN  +   +        T   ++  +C     + DLP  G  
Sbjct: 126  LLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGNH 185

Query: 1317 LTYTVADKKS----KLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPRPRN 1484
             T+    + +    K+DR +VN  W  A  L + +F      SDH P  V+I      RN
Sbjct: 186  YTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSF-CAMEFSDHCPSCVNISNQSGGRN 244

Query: 1485 RPFKFFNMWASNPEFGNIVATAWEQ-SVAGTAQFSXXXXXXXXXXXXXXXNEREYSHISS 1661
            +PFK  N    +PEF   +   W++ +  G+A F+               N   YS +  
Sbjct: 245  KPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEK 304

Query: 1662 RVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSEHLKNSD 1841
            RV +A   L+  Q +    P  S    L          +  AE  FL Q ++   LK  D
Sbjct: 305  RVVQAAQNLKTCQNNLLAAPS-SYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGD 363

Query: 1842 RCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDF---CEPI 2012
              T FFH M+      N I  +    G    +T ++      +++ L G+       E I
Sbjct: 364  SNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGI 423

Query: 2013 DMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVGS 2192
                 L+  +      + L  EV+  +IKS  F +  +K+PGPDGY+S FFKK+W IVG 
Sbjct: 424  SQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGP 483

Query: 2193 EFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAARI 2372
                AV+EFF SG+LL Q N T + +VPK  +   + +FRPISCCN IYKVI+K++A R+
Sbjct: 484  SLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRL 543

Query: 2373 EPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDWE 2552
            E  +   I  +QSAF++GR +TEN+ LA EL++G+    IS+R +LKVDLRKAFDSV W 
Sbjct: 544  ENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWG 603

Query: 2553 FLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVIC 2732
            F+  TL   N P +F + I +C++S+S+S+ ++GS+ G+FKG KGLRQGDPLSP LFVI 
Sbjct: 604  FIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIA 663

Query: 2733 LEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNFQN 2912
            +E LSRLL    +  S  YHPK   +RI+ LAFADDL++   G  +S+R I   L++F+N
Sbjct: 664  MEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKN 723

Query: 2913 CSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHYEPFV 3092
             SGL+ N  KS++YTAG+ + D  D      F  G+ PFRYLG+PL   KLR   Y   +
Sbjct: 724  LSGLEMNTEKSAVYTAGLEDTDKEDTLAF-GFVNGTFPFRYLGLPLLHRKLRRSDYSQLI 782

Query: 3093 DKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNFLW-- 3266
            DKIA   N W   TLS+AGR +LI SV+     FWLS   +P      I  +C  FLW  
Sbjct: 783  DKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGN 842

Query: 3267 ---QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWIHQKY 3437
               +     VSW++ CL K EGGLG R+   WN +L  + +W +  + D+LW+ W H   
Sbjct: 843  DITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANR 902

Query: 3438 LSSGSVWTWKVRKEDSPLIRRILEIR 3515
            L   + W  +     S + + IL +R
Sbjct: 903  LRHVNFWNAEAASHHSWIWKAILGLR 928


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  566 bits (1458), Expect = e-158
 Identities = 341/930 (36%), Positives = 492/930 (52%), Gaps = 19/930 (2%)
 Frame = +3

Query: 783  CWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFSTH 962
            CWN+RG +    +      V+        ++E+ +      +F +A    W  V+N++  
Sbjct: 7    CWNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFS 66

Query: 963  LAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSI 1142
              G+I+++W+P+      ++ + Q I  EV    + +   +S+VY  + + +R+ LW  I
Sbjct: 67   DLGKIWVMWDPSVQVVVVAKSL-QMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEI 125

Query: 1143 RSY---GTSINHPWLIMGDFNSVMCEQERYNMAPLTT-YDTKDLVDCCRELGLVDLPSTG 1310
             +    G   + PWL++GDFN V+  QE  N   L    + +D  DC     L DL   G
Sbjct: 126  VNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKG 185

Query: 1311 CKLTYT----VADKKSKLDRAMVNGQWSQAEWLGHANFKLPGHL--SDHSPCIVSIIEAP 1472
               T+           K+DR +VN  W+    L  ++  + G L  SDH  C V + E  
Sbjct: 186  NTFTWWNKSHTTPVAKKIDRILVNDSWNA---LFPSSLGIFGSLDFSDHVSCGVVLEETS 242

Query: 1473 RPRNRPFKFFNMWASNPEFGNIVATAW-EQSVAGTAQFSXXXXXXXXXXXXXXXNEREYS 1649
                RPFKFFN    N +F N+V   W   +V G++ F                +   YS
Sbjct: 243  IKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYS 302

Query: 1650 HISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSEHL 1829
             +  R K A D L   Q      P              K   +  AE SF RQ ++    
Sbjct: 303  ELEKRTKEAHDFLIGCQDRTLADPTPINAS-FELEAERKWHILTAAEESFFRQKSRISWF 361

Query: 1830 KNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKD---F 2000
               D  TK+FH M    +  N I+A+   +G L  S   ++    SY+ SLLG +     
Sbjct: 362  AEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYL 421

Query: 2001 CEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWD 2180
             E  DM+++LS  R S  Q  EL    + ++I++ALF +  +K+ GPDG+++ FF  SW 
Sbjct: 422  MEQNDMNLLLS-YRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWS 480

Query: 2181 IVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKII 2360
            IVG+E  DA+KEFF SG LLKQ N T I L+PK  +     DFRPISC N +YKVI +++
Sbjct: 481  IVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLL 540

Query: 2361 AARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDS 2540
              R++  ++ +I  AQSAF+ GR + EN+ LA +L+ GYN   IS R +LKVDL+KAFDS
Sbjct: 541  TDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDS 600

Query: 2541 VDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYL 2720
            V WEF+ + L  L  PEKF + I +C+S+ +++V++NG   G FK  KGLRQGDPLSPYL
Sbjct: 601  VRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYL 660

Query: 2721 FVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQ 2900
            FV+ +E  S LL+        +YHPK  NL I+HL FADD+++   G + S+  I + L 
Sbjct: 661  FVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLD 720

Query: 2901 NFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHY 3080
            +F + SGLK N  KS LY AG+ NQ   +      F IG++P RYLG+PL   KLR+  Y
Sbjct: 721  DFASWSGLKVNKDKSHLYLAGL-NQLESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEY 779

Query: 3081 EPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNF 3260
            EP ++KI     +W    LS+AGR +LI SV+ G   FW+S   +P     +I SLC  F
Sbjct: 780  EPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRF 839

Query: 3261 LW-----QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWI 3425
            LW     Q+K   VSW   CL K+EGGLG R +  WN +L  + +W +    D+LW  W 
Sbjct: 840  LWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQ 899

Query: 3426 HQKYLSSGSVWTWKVRKEDSPLIRRILEIR 3515
            H  +LS GS W  +  + DS   +R+L +R
Sbjct: 900  HLHHLSRGSFWAVEGGQSDSWTWKRLLSLR 929


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  526 bits (1354), Expect = e-146
 Identities = 314/909 (34%), Positives = 480/909 (52%), Gaps = 24/909 (2%)
 Frame = +3

Query: 771  MIVACWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDN 950
            M V CWN+RGL+   +Q  + S +   N+ +   LE+ +     N   ++    W++  N
Sbjct: 1    MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60

Query: 951  FSTHLAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGL 1130
            +     GRI+I+W+P+ ++    +   Q +   +       SF+++ VYG +S + RR L
Sbjct: 61   YCCSELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSL 119

Query: 1131 WSSI----RSYGTSINHPWLIMGDFNSVMCEQERY--NMAPLTTYDTKDLVDCCRELGLV 1292
            W  I    R+   S+  PWL++GDFN +    E Y  N + L     +DL  C R+  L 
Sbjct: 120  WEDILVLSRTSPLSVT-PWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLS 178

Query: 1293 DLPSTGCKLTYTVADKKS----KLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSI 1460
            DLPS G   T++   + +    KLDRA+ NG+W        A F  PG  SDH+PCI+ I
Sbjct: 179  DLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILI 237

Query: 1461 IEAPRPRNRPFKFFNMWASNPEFGNIVATAWE-QSVAGTAQFSXXXXXXXXXXXXXXXNE 1637
               P P  + FK+F+  +S+P +   ++TAWE  ++ G+  FS               N 
Sbjct: 238  DNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNR 297

Query: 1638 REYSHISSRVKRAKDELERAQQDAFDHPQDS--QKQELATTLRHKTVAICEAELSFLRQL 1811
              +S+I  R  ++   LE  Q +    P D+  +++ +A   R + +    A  SF RQ 
Sbjct: 298  LRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVA---RKQWIFFAAALESFFRQK 354

Query: 1812 AKSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGT 1991
            ++   L   D  T+FFH  V  +   N I  +   DG    +  Q+     +YY  LLG 
Sbjct: 355  SRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGI 414

Query: 1992 -KDFCEPIDMDVI--LSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGF 2162
              +   P  ++ I  L   R  S    +L    + +EI   LF +  +KAPGPDG+   F
Sbjct: 415  PSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEF 474

Query: 2163 FKKSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYK 2342
            F ++W IV S    A++EFFISG L +  N T I L+PK +    +  FRP++CC  IYK
Sbjct: 475  FIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYK 534

Query: 2343 VITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDL 2522
            VIT+II+ R++ F+   +   Q  FI+GR + EN+ LA EL+  +     + R  L+VD+
Sbjct: 535  VITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDI 594

Query: 2523 RKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGD 2702
             KA+D+V+WEFL + L  L+ P  F   I  C+SS+SYS+A NG + G F+G+KG+RQGD
Sbjct: 595  SKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGD 654

Query: 2703 PLSPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRI 2882
            P+S +LFV+ ++ LS+ L+       FN HP C    ITHL+FADD+L+ S G  +S+  
Sbjct: 655  PMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAG 714

Query: 2883 IMDCLQNFQNCSGLKSNALKSSLYTAG---IPNQDLLDIQEITNFEIGSMPFRYLGIPLA 3053
            I+  L +F+  SGL  N  K+ L   G     N+ L D   IT+   GS+P RYLG+PL 
Sbjct: 715  ILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITH---GSLPVRYLGVPLM 771

Query: 3054 AEKLRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICD 3233
            ++K+R   Y+P VD+I +   +WT   LS+AGR +L+KSV+     FW S+   P     
Sbjct: 772  SQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQ 831

Query: 3234 KITSLCRNFLW-----QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQK 3398
            K+  +C  FLW      ++   +SW   C  K  GGLG + + +WN  L  K +W +   
Sbjct: 832  KLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFTS 891

Query: 3399 SDTLWIQWI 3425
            + +LW+ W+
Sbjct: 892  AGSLWVSWV 900


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  518 bits (1334), Expect = e-144
 Identities = 299/805 (37%), Positives = 433/805 (53%), Gaps = 26/805 (3%)
 Frame = +3

Query: 1179 IMGDFNSVMCEQERYNMAPLTT-YDTKDLVDCCRELGLVDLPSTGCKLTY----TVADKK 1343
            ++GDFN V+  QE  N   L      +D   C  E+ L DL   G   T+    ++    
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 1344 SKLDRAMVNGQWSQAEWLGHANFKLPGHL--SDHSPCIVSIIEAPRPRNRPFKFFNMWAS 1517
             KLDR + N  W       H  F   G+L  SDH  C V +        RPFKFFN    
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLF---GNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLK 117

Query: 1518 NPEFGNIVATAW-EQSVAGTAQFSXXXXXXXXXXXXXXXNEREYSHISSRVKRAKDELER 1694
            N +F N+V   W   +V G++ +                +   YS I  R K A + L  
Sbjct: 118  NEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLIT 177

Query: 1695 AQQDAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSEHLKNSDRCTKFFHGMVK 1874
             Q     +P  S    L    + K V +  AE SF  Q ++       D  T +FH MV 
Sbjct: 178  CQNLTLANPSVSNAA-LELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVD 236

Query: 1875 RNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDF---CEPIDMDVILSGNRL 2045
                 N I ++   +G L  S   ++    +YY  LLG+ +     E  DM+++L+  R 
Sbjct: 237  SRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLT-YRC 295

Query: 2046 SSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVGSEFCDAVKEFFI 2225
            S +Q  EL +  T DEIK+A   +  +K  GPDGYS  FF+ +W I+G E   A+ EFF 
Sbjct: 296  SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355

Query: 2226 SGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAARIEPFMAHLIDRA 2405
            SG+LLKQ N T + L+PK+S+  ++ +FRPISC N +YKVI+K++ +R++  ++ +I  +
Sbjct: 356  SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415

Query: 2406 QSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDWEFLTSTLIGLNF 2585
            QSAF+ GR + EN+ LA E++ GYN   IS R +LKVDL+KAFDSV WEF+T+ L  L  
Sbjct: 416  QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475

Query: 2586 PEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVICLEYLSRLLNKN 2765
            PE++ + I +C+++ S+++++NG+  G F+  KGLRQGDPLSPYLFV+ +E  S+LL   
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 2766 TTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNFQNCSGLKSNALKS 2945
                  +YHPK G+L I+HL FADD+++   G ++S+  I + L +F + SGLK N  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 2946 SLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHYEPFVDKIATYINAWT 3125
             L+ AG+   + +       F  G+ P RYLG+PL   KLR+  Y P ++K++  + +W 
Sbjct: 596  QLFQAGLDLSERI-TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654

Query: 3126 GATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNFLWQS-----KHPLVS 3290
               LS+AGR +LI SV+ G+  FW+S   +P     KI SLC  FLW       K   VS
Sbjct: 655  SKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVS 714

Query: 3291 WKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWIHQKYLSSGSV----- 3455
            W DCCL K+EGGLGFR    WN +LL + +W +  +  +LW QW     L   S      
Sbjct: 715  WVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNA 774

Query: 3456 -----WTWKVRKEDSPLIRRILEIR 3515
                 WTWK+     PL  + ++ +
Sbjct: 775  LQTDPWTWKMLLNLRPLAEKFIKAK 799


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  518 bits (1334), Expect = e-144
 Identities = 299/805 (37%), Positives = 433/805 (53%), Gaps = 26/805 (3%)
 Frame = +3

Query: 1179 IMGDFNSVMCEQERYNMAPLTT-YDTKDLVDCCRELGLVDLPSTGCKLTY----TVADKK 1343
            ++GDFN V+  QE  N   L      +D   C  E+ L DL   G   T+    ++    
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 1344 SKLDRAMVNGQWSQAEWLGHANFKLPGHL--SDHSPCIVSIIEAPRPRNRPFKFFNMWAS 1517
             KLDR + N  W       H  F   G+L  SDH  C V +        RPFKFFN    
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLF---GNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLK 117

Query: 1518 NPEFGNIVATAW-EQSVAGTAQFSXXXXXXXXXXXXXXXNEREYSHISSRVKRAKDELER 1694
            N +F N+V   W   +V G++ +                +   YS I  R K A + L  
Sbjct: 118  NEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLIT 177

Query: 1695 AQQDAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSEHLKNSDRCTKFFHGMVK 1874
             Q     +P  S    L    + K V +  AE SF  Q ++       D  T +FH MV 
Sbjct: 178  CQNLTLANPSVSNAA-LELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVD 236

Query: 1875 RNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDF---CEPIDMDVILSGNRL 2045
                 N I ++   +G L  S   ++    +YY  LLG+ +     E  DM+++L+  R 
Sbjct: 237  SRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLT-YRC 295

Query: 2046 SSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVGSEFCDAVKEFFI 2225
            S +Q  EL +  T DEIK+A   +  +K  GPDGYS  FF+ +W I+G E   A+ EFF 
Sbjct: 296  SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355

Query: 2226 SGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAARIEPFMAHLIDRA 2405
            SG+LLKQ N T + L+PK+S+  ++ +FRPISC N +YKVI+K++ +R++  ++ +I  +
Sbjct: 356  SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415

Query: 2406 QSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDWEFLTSTLIGLNF 2585
            QSAF+ GR + EN+ LA E++ GYN   IS R +LKVDL+KAFDSV WEF+T+ L  L  
Sbjct: 416  QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475

Query: 2586 PEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVICLEYLSRLLNKN 2765
            PE++ + I +C+++ S+++++NG+  G F+  KGLRQGDPLSPYLFV+ +E  S+LL   
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 2766 TTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNFQNCSGLKSNALKS 2945
                  +YHPK G+L I+HL FADD+++   G ++S+  I + L +F + SGLK N  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 2946 SLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHYEPFVDKIATYINAWT 3125
             L+ AG+   + +       F  G+ P RYLG+PL   KLR+  Y P ++K++  + +W 
Sbjct: 596  QLFQAGLDLSERI-TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654

Query: 3126 GATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNFLWQS-----KHPLVS 3290
               LS+AGR +LI SV+ G+  FW+S   +P     KI SLC  FLW       K   VS
Sbjct: 655  SKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVS 714

Query: 3291 WKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWIHQKYLSSGSV----- 3455
            W DCCL K+EGGLGFR    WN +LL + +W +  +  +LW QW     L   S      
Sbjct: 715  WVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNA 774

Query: 3456 -----WTWKVRKEDSPLIRRILEIR 3515
                 WTWK+     PL  + ++ +
Sbjct: 775  LQTDPWTWKMLLNLRPLAEKFIKAK 799


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  516 bits (1329), Expect = e-143
 Identities = 313/944 (33%), Positives = 487/944 (51%), Gaps = 27/944 (2%)
 Frame = +3

Query: 786  WNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFSTHL 965
            WNVRGL+ S K   I   ++  N     ++E+++    +++     F+ W ++ N+  + 
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 966  AGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSIR 1145
             GRI+++W    +   P     Q +   V  +   + F  S VY  + +  R+ LWS ++
Sbjct: 66   RGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 1146 SYGTS--INH-PWLIMGDFNSVM--CEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTG 1310
             +  S  I H PW ++GDFN  +   E  +  + P+ T   +D         L D+ + G
Sbjct: 125  DHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQG 184

Query: 1311 CKLTYTVADKKS----KLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPRP 1478
               T+    +      KLDR ++N  W+Q     ++ F+  G  SDH  C +S+      
Sbjct: 185  PLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGG-CSDHLRCRISLNSEAGN 243

Query: 1479 RN---RPFKFFNMWASNPEFGNIVATAWEQS----VAGTAQFSXXXXXXXXXXXXXXXNE 1637
            +    +PFKF N      +F  +V+T W+ +    ++ +  F                  
Sbjct: 244  KVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMAR 303

Query: 1638 REYSHISSRVKRAKDELERAQQDAFDHPQD-SQKQELATTLRHKTVAICEAELSFLRQLA 1814
                ++S +   A   L   Q     +P   + ++E A   R   VAI E +  +L+Q +
Sbjct: 304  DRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEK--YLKQKS 361

Query: 1815 KSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGT- 1991
            K    +  D+ TK FH         N I  +   DG + T   ++ AE   ++R  L   
Sbjct: 362  KLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLI 421

Query: 1992 -KDFCEPIDMDVI--LSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGF 2162
              DF E + +  +  L   R S    + L+R VT +EI+  LF +  DK+PGPDGY+S F
Sbjct: 422  PNDF-EGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEF 480

Query: 2163 FKKSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYK 2342
            FK +W+I+G EF  AV+ FF  G L K IN TI+AL+PK +    + D+RPISCCNV+YK
Sbjct: 481  FKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYK 540

Query: 2343 VITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDL 2522
            VI+KIIA R++  +   I   QSAF++ R + EN+ LA EL++ Y+   IS RC +K+D+
Sbjct: 541  VISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDI 600

Query: 2523 RKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGD 2702
             KAFDSV W FL +    L FP +F   I  C++++S+SV +NG + G+F+  +GLRQG 
Sbjct: 601  SKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGC 660

Query: 2703 PLSPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRI 2882
             LSPYLFVIC++ LS++L+K      F YHPKC  + +THL+FADDL+++S G   S+  
Sbjct: 661  ALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIER 720

Query: 2883 IMDCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEK 3062
            I+     F   SGL+ +  KS++Y AG+      ++ +   F  G +P RYLG+PL  ++
Sbjct: 721  IIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKR 780

Query: 3063 LRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKIT 3242
            L      P ++++   I +WT   LSYAGR  LI SVL  I  FWL+   +P     ++ 
Sbjct: 781  LSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELE 840

Query: 3243 SLCRNFLW-----QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDT 3407
             +C  FLW      S    +SW   C  K EGGLG R +K  N     K +W I   S++
Sbjct: 841  KMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNS 900

Query: 3408 LWIQWIHQKYLSSGSVWTWK-VRKEDSPLIRRILEIRDQILTQS 3536
            LW++W+ Q  L + S W  K    + S + +++L+ R+   T S
Sbjct: 901  LWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLS 944


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  511 bits (1316), Expect = e-141
 Identities = 308/829 (37%), Positives = 432/829 (52%), Gaps = 18/829 (2%)
 Frame = +3

Query: 1083 ISIVYGLHSIVARRGLWSSIRSYGTS---INHPWLIMGDFNSVMCEQERYNMAPLTT-YD 1250
            +S VY     V R+ LW+ I  +      I+ PW ++GDFN ++   E            
Sbjct: 3    LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62

Query: 1251 TKDLVDCCRELGLVDLPSTGCKLTY----TVADKKSKLDRAMVNGQWSQAEWLGHANFKL 1418
            T+   +      L DL   G   T+    + A    KLDR +VN +W+         F  
Sbjct: 63   TRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGE 122

Query: 1419 PGHLSDHSPCIVSIIEAPRPRNRPFKFFNMWASNPEFGNIVATAW-EQSVAGTAQFSXXX 1595
            P   SDHS C +S++ A     +PF+F N    +  F +++   W   SV G+A +    
Sbjct: 123  PD-FSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSV 181

Query: 1596 XXXXXXXXXXXXNEREYSHISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVA 1775
                        +   YS I  R K A D L  AQ      P  S     A T R K   
Sbjct: 182  KLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQR-KWRI 240

Query: 1776 ICEAELSFLRQLAKSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVA 1955
            + EAE SF  Q ++   L+  D  + +FH M       NHI  ++   G        +  
Sbjct: 241  LAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLEN 300

Query: 1956 EFTSYYRSLLGTKD---FCEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGED 2126
                Y++S LG++      E  D+  +LS  R S  Q   L    ++++IK+A F +  +
Sbjct: 301  HCVEYFQSNLGSEQGLPLFEQADISNLLS-YRCSPAQQVSLDTPFSSEQIKNAFFSLPRN 359

Query: 2127 KAPGPDGYSSGFFKKSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGD 2306
            KA GPDG+S  FF   W I+G E  +A+ EFF SGKLLKQ N T + L+PK ++  S+ D
Sbjct: 360  KASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSD 419

Query: 2307 FRPISCCNVIYKVITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHK 2486
            FRPISC N +YKVI+K++  R++ F+   I  +QSAF+ GR   EN+ LA EL+ GYN K
Sbjct: 420  FRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKK 479

Query: 2487 RISNRCILKVDLRKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHG 2666
             I+   +LKVDLRKAFDSV W+F+ S L  LN PEKF   I+EC+S++S+SV LNG   G
Sbjct: 480  NIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAG 539

Query: 2667 HFKGQKGLRQGDPLSPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLL 2846
            HF   KGLRQGDP+SPYLFV+ +E  S LL    T     YHPK   L I+HL FADD++
Sbjct: 540  HFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVM 599

Query: 2847 LMSRGDTTSVRIIMDCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMP 3026
            +   G ++S+  I++ L++F   SGL  N  K+ LY AG+ +Q   D      F++GS+P
Sbjct: 600  IFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGL-SQSESDSMASYGFKLGSLP 658

Query: 3027 FRYLGIPLAAEKLRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSI 3206
             RYLG+PL + KL +  Y P ++KI    N+W    LS+AGR +L+ SV+ GI  FW+S 
Sbjct: 659  VRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISS 718

Query: 3207 LPIPTTICDKITSLCRNFLWQSK-----HPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLT 3371
              +P     KI SLC  FLW S+        V+W   CL K EGG+G R     N +L  
Sbjct: 719  FILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYL 778

Query: 3372 KCLWDIHQKSDTLWIQWIHQKYL-SSGSVWTWKVRKEDSPLIRRILEIR 3515
            + +W +   S +LW+ W  Q  L  S S W    +  DS   + +L +R
Sbjct: 779  RMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLR 827


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  496 bits (1277), Expect = e-137
 Identities = 311/900 (34%), Positives = 460/900 (51%), Gaps = 23/900 (2%)
 Frame = +3

Query: 783  CWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFSTH 962
            CWNVRG + S  +                ++E+ +      +F S     W  V+N+   
Sbjct: 7    CWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFS 66

Query: 963  LAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSI 1142
            + G+I+++W+P+         + Q I  E+    + + F +SIVY  +    R+ LW+ +
Sbjct: 67   VLGKIWVLWDPSVKVVVIGRSL-QMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNEL 125

Query: 1143 RSYGTS---INHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTGC 1313
                 S   +   W+++GDFN ++  +   N         +    C  +  L DL   G 
Sbjct: 126  VQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAFRSCLLDSDLYDLVYKGS 183

Query: 1314 KLTY----TVADKKSKLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPRPR 1481
              T+    +      K+DR +VN  W+      +ANF  P   SDHS C V +  A    
Sbjct: 184  SYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAVLKA 242

Query: 1482 NRPFKFFNMWASNPEFGNIVATAWEQ-SVAGTAQFSXXXXXXXXXXXXXXXNEREYSHIS 1658
             RPF+FFN +  NP+F  ++   W   +V+G+A +                +   YS I 
Sbjct: 243  KRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIE 302

Query: 1659 SRVKRAKDELERAQQDAFDHPQDSQKQ-ELATTLRHKTVAICEAELSFLRQLAKSEHLKN 1835
             RV  A   +   Q+    +P       EL  T + + +A  +AE SF  Q +    L  
Sbjct: 303  KRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILA--KAEESFFCQKSSISWLYE 360

Query: 1836 SDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAE-----FTSYYRSLL----G 1988
             D  T +FH M       N I  +   D      T Q + E       +++ SLL    G
Sbjct: 361  GDNNTAYFHKMADMRKSINTINFLID-DFGERIETQQGIKEGIKEHSCNFFESLLCGVEG 419

Query: 1989 TKDFCEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFK 2168
                 +  DM+++LS  R S +Q  +L R  +  +I+ A F +  +KA GPDGYSS FFK
Sbjct: 420  ENSLAQS-DMNLLLSF-RCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFK 477

Query: 2169 KSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVI 2348
              W +VG E  +AV+EFF SG+LLKQ N T + L+PK ++   + DFRPISC N +YKVI
Sbjct: 478  GVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVI 537

Query: 2349 TKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRK 2528
             K++ +R++  +  +I  +QSAF+ GR ++EN+ LA E++ GYN K IS+R +LKVDLRK
Sbjct: 538  AKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRK 597

Query: 2529 AFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPL 2708
            AFDSV W+F+ S    L  PEKF   I +C+S+  +SV +NGS  G FK  KGLRQGDPL
Sbjct: 598  AFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPL 657

Query: 2709 SPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIM 2888
            SPYLFV+ +E  S LL         +YHPK  +L I+HL FADD+++   G ++S+  I 
Sbjct: 658  SPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGIS 717

Query: 2889 DCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLR 3068
            + L +F + SGL  N  K++LY AG    + L I     F I ++P RYLG+PL + KL+
Sbjct: 718  EALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHY-GFPISTLPIRYLGLPLMSRKLK 776

Query: 3069 LIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSL 3248
            +  YE     +     +W   +LS+AGR +LI SV+ G+  FW+S   +      KI SL
Sbjct: 777  ISEYE-----LVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESL 831

Query: 3249 CRNFLWQ-----SKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLW 3413
            C  FLW      SK   ++W   CL K EGG+G R    WN +   + +W +   +D LW
Sbjct: 832  CSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVLW 891


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  493 bits (1270), Expect = e-136
 Identities = 310/900 (34%), Positives = 458/900 (50%), Gaps = 23/900 (2%)
 Frame = +3

Query: 783  CWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFSTH 962
            CWNVRG + S  +                ++E+ +      +F S     W  V+N+   
Sbjct: 7    CWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFS 66

Query: 963  LAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSI 1142
            + G+I+++W+P+         + Q I  E+    + + F +SIVY  +    R+ LW+ +
Sbjct: 67   VLGKIWVLWDPSVKVVVIGRSL-QMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNEL 125

Query: 1143 RSYGTS---INHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTGC 1313
                 S   +   W+++GDFN ++  +   N         +    C  +  L DL   G 
Sbjct: 126  VQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAFRSCLLDSDLYDLVYKGS 183

Query: 1314 KLTY----TVADKKSKLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPRPR 1481
              T+    +      K+DR +VN  W+      +ANF  P   SDHS C V +  A    
Sbjct: 184  SYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAVLKA 242

Query: 1482 NRPFKFFNMWASNPEFGNIVATAWEQ-SVAGTAQFSXXXXXXXXXXXXXXXNEREYSHIS 1658
             RPF+FFN +  NP+F  ++   W   +V+G+A +                +   YS I 
Sbjct: 243  KRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIE 302

Query: 1659 SRVKRAKDELERAQQDAFDHPQDSQKQ-ELATTLRHKTVAICEAELSFLRQLAKSEHLKN 1835
             RV  A   +   Q+    +P       EL  T + + +A  +AE SF  Q +    L  
Sbjct: 303  KRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILA--KAEESFFCQKSSISWLYE 360

Query: 1836 SDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAE-----FTSYYRSLL----G 1988
             D  T +FH M       N I  +   D      T Q + E       +++ SLL    G
Sbjct: 361  GDNNTAYFHKMADMRKSINTINFLID-DFGERIETQQGIKEGIKEHSCNFFESLLCGVEG 419

Query: 1989 TKDFCEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFK 2168
                 +  DM+++LS  R S +Q  +L R  +  +I+ A F +  +KA GPDGYSS FFK
Sbjct: 420  ENSLAQS-DMNLLLSF-RCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFK 477

Query: 2169 KSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVI 2348
              W +VG E  +AV+EFF SG+LLKQ N T + L+PK ++   + DFRPISC N +YKVI
Sbjct: 478  GVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVI 537

Query: 2349 TKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRK 2528
             K++ +R++  +  +I  +QSAF+ GR ++EN+ LA E++ GYN K IS+R +LKVDLRK
Sbjct: 538  AKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRK 597

Query: 2529 AFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPL 2708
            AFDSV W+F+ S    L  PEKF   I +C+S+  +SV +NGS  G FK  KGLRQGDPL
Sbjct: 598  AFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPL 657

Query: 2709 SPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIM 2888
            SPYLFV+ +E  S LL          YHPK  +L I+HL FADD+++   G ++S+  I 
Sbjct: 658  SPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGIS 717

Query: 2889 DCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLR 3068
            + L +F + SGL  N  K++LY AG    + L I     F I ++P RYLG+PL + KL+
Sbjct: 718  EALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHY-GFPISTLPIRYLGLPLMSRKLK 776

Query: 3069 LIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSL 3248
            +  YE     +     +W   +LS+AGR +LI SV+ G+  FW+S   +      KI SL
Sbjct: 777  ISEYE-----LVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESL 831

Query: 3249 CRNFLWQ-----SKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLW 3413
            C  FLW      SK   ++W   CL K EGG+  R    WN +   + +W +   +D LW
Sbjct: 832  CSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVLW 891


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  450 bits (1158), Expect = e-123
 Identities = 280/808 (34%), Positives = 430/808 (53%), Gaps = 19/808 (2%)
 Frame = +3

Query: 798  GLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFSTHLAGRI 977
            GL+   +Q  + S +   N+ +   LE+ +     N   ++    W++  N+     GRI
Sbjct: 53   GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112

Query: 978  FIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSI----R 1145
            +I+W+P+ ++    +   Q +   +       SF+++ VYG +S + RR LW  I    R
Sbjct: 113  WIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSR 171

Query: 1146 SYGTSINHPWLIMGDFNSVMCEQERY--NMAPLTTYDTKDLVDCCRELGLVDLPSTGCKL 1319
            +   S+  PWL++GDFN +    E Y  N + L     +DL  C R+  L DLPS G   
Sbjct: 172  TSPLSVT-PWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFF 230

Query: 1320 TYTVADKKS----KLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPRPRNR 1487
            T++   + +    KLDRA+ NG+W        A F  PG  SDH+PCI+ I   P P  +
Sbjct: 231  TWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSKK 289

Query: 1488 PFKFFNMWASNPEFGNIVATAWEQS-VAGTAQFSXXXXXXXXXXXXXXXNEREYSHISSR 1664
             FK+F+  +S+P +   ++TAWE++ + G+  FS               N   +S+I  R
Sbjct: 290  SFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQR 349

Query: 1665 VKRAKDELERAQQDAFDHPQDS--QKQELATTLRHKTVAICEAELSFLRQLAKSEHLKNS 1838
              ++   LE  Q +    P D+  +++ +A   R + +    A  SF RQ ++   L   
Sbjct: 350  TAQSLTRLEDIQVELLTSPSDTLFRREHVA---RKQWIFFAAALESFFRQKSRIRWLHEG 406

Query: 1839 DRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGT-KDFCEPID 2015
            D  T+FFH  V  +   N I  +   DG    +  Q+     +YY  LLG   +   P  
Sbjct: 407  DANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFS 466

Query: 2016 MDVI--LSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVG 2189
            ++ I  L   R  S    +L    + +EI   LF +  +KAPGPDG+   FF ++W IV 
Sbjct: 467  VEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVK 526

Query: 2190 SEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAAR 2369
            S    A++EFFISG L +  N T I L+PK +    +  FRP++CC  IYKVIT+II+ R
Sbjct: 527  SSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRR 586

Query: 2370 IEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDW 2549
            ++ F+   +   Q  FI+GR + EN+ LA EL+  +     + R  L+VD+ KA+D+V+W
Sbjct: 587  LKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNW 646

Query: 2550 EFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVI 2729
            EFL + L  L+ P  F   I  C+SS+SYS+A NG + G F+G+KG+RQGDP+S +LFV+
Sbjct: 647  EFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVL 706

Query: 2730 CLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNFQ 2909
             ++ LS+ L+       FN HP C    ITHL+FADD+L+ S G  +S+  I+  L +F+
Sbjct: 707  VMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFR 766

Query: 2910 NCSGLKSNALKSSLYTAG---IPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHY 3080
              SGL  N  K+ L   G     N+ L D   IT+   GS+P RYLG+PL ++K+R   Y
Sbjct: 767  QGSGLGINREKTELLLDGGNFARNRSLADNLGITH---GSLPVRYLGVPLMSQKMRRQDY 823

Query: 3081 EPFVDKIATYINAWTGATLSYAGRRELI 3164
            +P VD+I +   +WT   LS+AGR +L+
Sbjct: 824  QPLVDRINSRFTSWTARHLSFAGRLQLL 851


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  442 bits (1137), Expect = e-121
 Identities = 275/901 (30%), Positives = 442/901 (49%), Gaps = 22/901 (2%)
 Frame = +3

Query: 969  GRIFIIWNP-AKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGLWSSIR 1145
            GRI+++W   A+LT  P     Q I   +  +     F  S +Y  + +  RR LW  IR
Sbjct: 428  GRIWVVWRDNARLT--PVFKSSQMITCSILLEGKEEEFFCSFIYASNFVEERRILWEDIR 485

Query: 1146 SYGTSI---NHPWLIMGDFNSVM--CEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTG 1310
            S+  S    N PW++ GDFN ++   E   Y+ +P T    +D     +E+G        
Sbjct: 486  SHHDSPLIRNKPWILCGDFNEILEGGEHSNYDNSPYTPPGMRDF----QEIG-------- 533

Query: 1311 CKLTYTVADKKSKLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCIVSIIEAPRPRNRP 1490
                      +  L+ A   G+                                    +P
Sbjct: 534  ----------RLMLEAAATGGR------------------------------------KP 547

Query: 1491 FKFFNMWASNPEFGNIVATAWEQS----VAGTAQFSXXXXXXXXXXXXXXXNEREYSHIS 1658
            FKF N+    P+F  +V + W  S    V+ +A +                 + +   + 
Sbjct: 548  FKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGDLP 607

Query: 1659 SRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKT--VAICEAELSFLRQLAKSEHLK 1832
             R + A   L   Q     +P    ++ +A  L+  T    + E E  FL+Q +K   + 
Sbjct: 608  KRTREAHILLCEKQATTLANPS---QETIAEELKAYTDWTHLSELEEGFLKQKSKLHWMN 664

Query: 1833 NSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTK--DFCE 2006
              D    +FH   +    RN I  +   +     ++ ++  E   ++   L  +  DF  
Sbjct: 665  VGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDF-H 723

Query: 2007 PIDMDVI--LSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWD 2180
             I ++ +  L   R S      L REVT +EI+  LF +  +K+PGPDGY+S FFK +W 
Sbjct: 724  GISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWS 783

Query: 2181 IVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKII 2360
            + G +F  A++ FF+ G L K +N TI+AL+PK      + D+RPISCCNV+YKVI+KI+
Sbjct: 784  LTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKIL 843

Query: 2361 AARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDS 2540
            A R++  +   I + QSAF++ R + EN+ LA EL++ Y+ + ++ RC +K+D+ KAFDS
Sbjct: 844  ANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDS 903

Query: 2541 VDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYL 2720
            V W+FL +TL  LNFPE F   I  C+S++++SV +NG + G F   +GLRQG  LSPYL
Sbjct: 904  VQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYL 963

Query: 2721 FVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQ 2900
            FVIC+  LS ++++     +  YHPKC  + +THL FADDL++   G   S+  +++  +
Sbjct: 964  FVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFK 1023

Query: 2901 NFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHY 3080
             F   SGL+ +  KS++Y AG+   D +       F  G +P RYLG+PL  +++    Y
Sbjct: 1024 EFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADY 1083

Query: 3081 EPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNF 3260
             P ++ + T I++WT  +LSYAGR  L+ SV+  I  FW+S   +P     +I  LC  F
Sbjct: 1084 SPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAF 1143

Query: 3261 LWQS-----KHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWI 3425
            LW       K   ++W   C  K EGGLG + +   N     K +W +     +LW+ WI
Sbjct: 1144 LWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWI 1203

Query: 3426 HQKYLSSGSVWTWKVRKE-DSPLIRRILEIRDQILTQSGSQEQAITNLAAWHNSGKNGTR 3602
                +  G+ W+   R    S + +++L+ R+   +    + +  ++ + W++   +  R
Sbjct: 1204 WTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGR 1263

Query: 3603 L 3605
            L
Sbjct: 1264 L 1264


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  438 bits (1127), Expect = e-120
 Identities = 270/793 (34%), Positives = 401/793 (50%), Gaps = 21/793 (2%)
 Frame = +3

Query: 1071 NSFSISIVYGLHSIVARRGLWSSIRSYGTSIN---HPWLIMGDFNSVMCEQERYNMAPLT 1241
            +S  +SIVY  +  + R+ LW  +     S++    PW+++GDFN V+C  E      L 
Sbjct: 51   DSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLN 110

Query: 1242 TYDT-KDLVDCCRELGLVDLPSTGCKLTY----TVADKKSKLDRAMVNGQWSQAEWLGHA 1406
                 K   DC  E  L DL   G   T+           KLDR +VN  W       +A
Sbjct: 111  VNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYA 170

Query: 1407 NFKLPGHLSDHSPCIVSIIEAPRPRNRPFKFFNMWASNPEFGNIVATAWEQ-SVAGTAQF 1583
             F  P   SDH+ C V I        RPF+F+N    NP+F ++V   W   +V G++ F
Sbjct: 171  VFGEPD-FSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMF 229

Query: 1584 SXXXXXXXXXXXXXXXNEREYSHISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRH 1763
                            +   +S++  RVK A + +   Q      P       L    + 
Sbjct: 230  KMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPT-IPNAALEMEAQR 288

Query: 1764 KTVAICEAELSFLRQLAKSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTA 1943
            K + + +AE SF  Q ++   +   D  T +FH M       N I  +   +G    +  
Sbjct: 289  KWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQL 348

Query: 1944 QVVAEFTSYYRSLLGTK---DFCEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFD 2114
             +      Y+ +LLG +         D D++L   R S +Q +EL    +  +IKSA F 
Sbjct: 349  GIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPF-RCSHDQKKELAMSFSRQDIKSAFFS 407

Query: 2115 IGEDKAPGPDGYSSGFFKKSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCP 2294
               +K  GPDG+   FFK++W ++G+E  DAV EFF S  LLKQ N T + L+PK ++  
Sbjct: 408  FPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNAS 467

Query: 2295 SVGDFRPISCCN----VIYKVITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQE 2462
             + DFRPISC +     +YKVI +++  R++  ++ +I   QSAF+ GR + EN+ LA E
Sbjct: 468  KMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATE 527

Query: 2463 LLRGYNHKRISNRCILKVDLRKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSV 2642
            L++GYN + I  R +LKVDLRKAFDS+ W+F+ S L  +  P++F   I +C+S+ ++SV
Sbjct: 528  LVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSV 587

Query: 2643 ALNGSIHGHFKGQKGLRQGDPLSPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITH 2822
             +NG+  G FK  +GLRQG+PLSP+LFV+ +E  S LLN        +YHPK   L I+H
Sbjct: 588  CVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISH 647

Query: 2823 LAFADDLLLMSRGDTTSVRIIMDCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEIT 3002
            L FADD+++   G ++S+  I + L++F   SGL  N  K+ LY AG+   D ++   I 
Sbjct: 648  LMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGL---DRIEASTI- 703

Query: 3003 NFEIGSMPFRYLGIPLAAEKLRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQG 3182
                             A KLR+  Y P ++K+A    +W+   LS+AGR +LI SV+ G
Sbjct: 704  -----------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISG 746

Query: 3183 IECFWLSILPIPTTICDKITSLCRNFLWQ-----SKHPLVSWKDCCLQKTEGGLGFRDMK 3347
            I  FW+S   +P     +I +LC  FLW       K   V+W + CL K EGG+G R   
Sbjct: 747  IINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLR--- 803

Query: 3348 AWNHSLLTKCLWD 3386
                ++L   LWD
Sbjct: 804  --RFTVLNTTLWD 814


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  438 bits (1127), Expect = e-120
 Identities = 280/830 (33%), Positives = 422/830 (50%), Gaps = 28/830 (3%)
 Frame = +3

Query: 1119 RRGLWSSIRSYGTSI---NHPWLIMGDFNSVMCEQERYNMA--PLTTYDTKDLVDCCREL 1283
            R+ LW+ +R +  S    + PW+I GDFN ++  +E  N    P+TT   +D        
Sbjct: 4    RKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNHC 63

Query: 1284 GLVDLPSTGCKLTYTVADKKS----KLDRAMVNGQWSQAEWLGHANFKLPGHLSDHSPCI 1451
             + DL   G   T++   +      KLDR +VN  W Q+    ++ F+  G  SDH  C 
Sbjct: 64   SITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQSFPRSYSVFEAGG-CSDHLRCR 122

Query: 1452 VSI---IEAPRPRNRPFKFFNMWASNPEFGNIVATAWEQSVA----GTAQFSXXXXXXXX 1610
            +++     A     RPFKF N+      F   V + W ++ A     ++ F         
Sbjct: 123  INLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGL 182

Query: 1611 XXXXXXXNEREYSHISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVAICEAE 1790
                    +    ++  + K A + L + Q     +P  S  QE       K   I   E
Sbjct: 183  KPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQE-ENEAYAKWDHIAVLE 241

Query: 1791 LSFLRQLAKSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSY 1970
              FL+Q +K   L   DR  K FH  V     +N I  +   DGS+ +   ++  E   +
Sbjct: 242  EKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHH 301

Query: 1971 YRSLLGT--KDFCEPIDMDVI--LSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPG 2138
            +R  L     DF E I ++ +  L   R S    E L   V+ +EI   +F +  DK+PG
Sbjct: 302  FREFLQLIPNDF-EGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPG 360

Query: 2139 PDGYSSGFFKKSWDIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPI 2318
            PDGY++ F+K +W+I+G+EF  A++ FF  G L K IN TI+AL+PK      + D+RPI
Sbjct: 361  PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPI 420

Query: 2319 SCCNVIYKVITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISN 2498
            SCCNV+YKVI+KIIA R++  +   I   QSAF++ R + EN+ LA E+++ Y+   +S+
Sbjct: 421  SCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSS 480

Query: 2499 RCILKVDLRKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKG 2678
            RC LK+D+ KAFDSV W+FL + L  +NFP +F   I  C++++S+SV +NG + G F  
Sbjct: 481  RCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSS 540

Query: 2679 QKGLRQGDPLSPYLFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSR 2858
             + LRQG  LSPYLFVI ++ LS++L+K      F YHPKC  + +THL+FADDL+++S 
Sbjct: 541  ARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSD 600

Query: 2859 GDTTSVRIIMDCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYL 3038
            G   S+  I+  L  F   SGLK +  KS++Y AG+      +I +  +F++G +P RYL
Sbjct: 601  GKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYL 660

Query: 3039 GIPLAAEKLRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIP 3218
            G+PL +++L      P ++++   I AWT   LS+AGR  LI S L  I  FW++   +P
Sbjct: 661  GLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLP 720

Query: 3219 TTICDKITSLCRNFLW-----QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLW 3383
                 +I  LC  FLW      S    VSW+  C  K E         AW+     K +W
Sbjct: 721  RACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKKE---------AWH-----KGVW 766

Query: 3384 DIHQKSDTLWIQW--IHQKYLSSGSVWTWKVRKE-DSPLIRRILEIRDQI 3524
              H+     +  W  I  K  +   +  W ++      L    LE RD +
Sbjct: 767  FAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHL 816


>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1383

 Score =  432 bits (1110), Expect = e-118
 Identities = 285/902 (31%), Positives = 466/902 (51%), Gaps = 15/902 (1%)
 Frame = +3

Query: 777  VACWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRG--LNRFCSAKFRSWKVVDN 950
            +  WN+RGL+  +K+  +  L+   N     + E+K++N    L R C  K    + + +
Sbjct: 4    ILSWNIRGLNARMKRASLRKLIAINNPGCVFVQETKMENINARLMRTCW-KSNEIEWIFS 62

Query: 951  FSTHLAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISI--VYGLHSIVARR 1124
             S   +G I  IW+   +    S ++ Q+    ++   +++ F  ++  VY    I AR 
Sbjct: 63   PSRGSSGGILAIWDK-NIFNANSNVIHQSWIA-ISGIFSTDQFECTLITVYNPCEIAARS 120

Query: 1125 GLWSSIRSYGTSINHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPS 1304
             +W  I  +  S   P L++GDFN V+   ER +++  +     D     +EL L+++PS
Sbjct: 121  EVWKQIIEFQNSNPLPCLLVGDFNEVLRPSERGSLS-FSHNGINDFKSFVQELKLLEIPS 179

Query: 1305 TGCKLTYTVADKKSKLDRAMVNGQWSQAEWLGHA-NFK---LPGHLSDHSPCIV-SIIEA 1469
            +    T+  A+ KS LDR +V+      EW+ H  N K   L   LSDH P +V S I+ 
Sbjct: 180  SSRAYTWYRANSKSLLDRLLVS-----PEWVSHCPNIKVSILQRGLSDHCPLLVHSHIQE 234

Query: 1470 PRPRNRPFKFFNMWASNPEFGNIVATAWEQSVAGTAQFSXXXXXXXXXXXXXXXNEREYS 1649
              P+  PF+F N W ++P+   IV  +W  S     + S               N  E+ 
Sbjct: 235  WGPK--PFRFNNCWLTDPKCMKIVEASWSSS----PKISVVEKLKETKKRLKEWNLNEFG 288

Query: 1650 HISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSEHL 1829
             I + +++ +D +    ++A +   D ++ E     +       + +  +  Q ++   L
Sbjct: 289  SIDANIRKLEDCIANFDKEADERELDKEELEKRREAQADLWKWMKRKEIYWAQRSRITWL 348

Query: 1830 KNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDFCEP 2009
            K  D+ TKFFH +   N KR ++ A  + DG  T   +Q+  E  ++++ +        P
Sbjct: 349  KAGDKNTKFFHAIAS-NKKRKNMMACIETDGQSTNDPSQIKKEARAFFKKIFKEDHVKRP 407

Query: 2010 IDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVG 2189
               ++ L   RLS  Q   L+   TT+EI +A+     DKAPGPDG++  F K +WDI+ 
Sbjct: 408  TLENLHLK--RLSQNQANSLITPFTTEEIDTAVSSCASDKAPGPDGFNFKFVKSAWDIIK 465

Query: 2190 SEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAAR 2369
            ++    V +F+ +G L +  N   IAL+PK  +  S+ D+RPIS    IYK++ K++A R
Sbjct: 466  TDIYGIVNDFWETGCLPQGCNTAYIALIPKIDNPSSLKDYRPISMVGFIYKIVAKLLAKR 525

Query: 2370 IEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDW 2549
            ++  ++ LI   QS++++GR++ +   +A E++     KR     +LK+D  KA+DSV W
Sbjct: 526  LQSVISSLISPLQSSYVKGRQILDGALVASEIIESCK-KRNIEAILLKLDFHKAYDSVSW 584

Query: 2550 EFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVI 2729
             FL  TL  +NFP K+   I  CV+S+S S+ +NGS    FK  +GLRQGDPLSP+LFV+
Sbjct: 585  NFLQWTLDQMNFPVKWCEWIKTCVTSASASILVNGSPTPPFKLHRGLRQGDPLSPFLFVL 644

Query: 2730 CLEYLSRLLNKNTTVASFNYHPKCG-NLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNF 2906
              E LS++++K T++  +   P C     ITHL +ADD L+    +T S++ I   L  F
Sbjct: 645  VGEVLSQMISKATSLQLWRGIPACSRGSEITHLQYADDTLMFCEANTNSLKNIQKTLIIF 704

Query: 2907 QNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHYEP 3086
            Q  SGL+ N  KSSL    + +  + +       +IG++PF YLG+P+     R+  ++P
Sbjct: 705  QLVSGLQVNFHKSSLMGLNVTSSWIQEAANSLMCKIGTIPFSYLGLPIGDNPARIRTWDP 764

Query: 3087 FVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNFLW 3266
             +DK+   + +W G  LS  GR  LIK+ L  +  +++S+ P+P  + +KI  L R FLW
Sbjct: 765  IIDKLEKKLASWKGKLLSLGGRLTLIKASLSNLPLYYMSLFPVPKGVIEKINKLMRAFLW 824

Query: 3267 ---QSKHP--LVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWIHQ 3431
                 K P  +VSW      KT GGLG  ++   N SLL K +W + +   ++W   I  
Sbjct: 825  CGDFGKRPFSMVSWSIVQQPKTSGGLGIGNILHKNLSLLFKWIWRLFENPSSMWGSIIRS 884

Query: 3432 KY 3437
            KY
Sbjct: 885  KY 886


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  428 bits (1101), Expect = e-117
 Identities = 232/566 (40%), Positives = 339/566 (59%), Gaps = 10/566 (1%)
 Frame = +3

Query: 1851 KFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGT--KDFC--EPIDM 2018
            K FH  V     +N I  +   DG +      ++ E   +++  L    +DF   E  ++
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQGD-DIMVEAEKFFKEFLQLIPEDFVGVEVREL 80

Query: 2019 DVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVGSEF 2198
              +L   R ++   E L REV+++EIK+ LF + +DK+PGPDGY+S F+K +WDI+G EF
Sbjct: 81   QDLLQF-RCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEF 139

Query: 2199 CDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAARIEP 2378
               V+ FF  G L K IN  I+AL+PK      + D+RPISCCNV+YKVI+KIIA R++ 
Sbjct: 140  TLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKL 199

Query: 2379 FMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDWEFL 2558
             +   I   QSAF++ R + EN+ LA EL++ Y+   IS RC +K+D+ KAFDSV W FL
Sbjct: 200  LLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFL 259

Query: 2559 TSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVICLE 2738
            T+TL+ +NF   F   I  C++++S+SV +NG + G+F+ ++GLRQG  LSPYLFVIC++
Sbjct: 260  TNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMD 319

Query: 2739 YLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNFQNCS 2918
             LS++L+K   V  F +HPKC  L +THL+FADDL+++S G T S+  I++    F   S
Sbjct: 320  VLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRS 379

Query: 2919 GLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHYEPFVDK 3098
            GL+ +  KS+LY AG+      +I     F++G +P RYLG+PL  ++L    Y P +++
Sbjct: 380  GLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQ 439

Query: 3099 IATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNFLW---- 3266
            I   I  WT    S+AGR  LIKSVL  I  FWL+   +P     +I  LC +FLW    
Sbjct: 440  IKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSE 499

Query: 3267 -QSKHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWIHQKYLS 3443
              S    +SW   C  K EGGLG R++K  N     K +W I   S++LW +W+ +  + 
Sbjct: 500  MSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIR 559

Query: 3444 SGSVWTWKVRKE-DSPLIRRILEIRD 3518
              S+W+ K      S + R+IL+IRD
Sbjct: 560  KKSIWSLKQSTSMGSWIWRKILKIRD 585


>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1380

 Score =  427 bits (1099), Expect = e-116
 Identities = 283/902 (31%), Positives = 458/902 (50%), Gaps = 15/902 (1%)
 Frame = +3

Query: 777  VACWNVRGLHGSLKQGEILSLVQCENIDLFAILESKLDNRGLNRFCSAKFRSWKVVDNFS 956
            +  WN+RGL   +K+  +  ++   N     I E+KL      +   + + S +V   FS
Sbjct: 4    ILSWNIRGLGARIKRSALRKMISIHNPLFITIQETKLGEID-PKLIRSIWNSNEVAWTFS 62

Query: 957  TH--LAGRIFIIWNPAKLTFCPSEIMPQAIHGEVTCKITSNSFSISIVYGLHSIVARRGL 1130
                 AG I  +W+   +T   S +    I    T    +   S+  +Y   S+  R  +
Sbjct: 63   PADGNAGGILTLWSKTFITVSSSHVSKNWIAVRGTISHLNWDCSLISIYNPCSVEERAVV 122

Query: 1131 WSSIRSYGTSINHPWLIMGDFNSVMCEQERYNMAPLTTYDTKDLVDCCRELGLVDLPSTG 1310
            W  I  + T+   P LI+GDFN  +   +R ++A ++   + D     + L L ++P+T 
Sbjct: 123  WGEILEFWTTSKLPCLIIGDFNETLASNDRGSLA-ISQSGSNDFRQFVQSLQLTEIPTTE 181

Query: 1311 CKLTYTVADKKSKLDRAMVNGQWSQAEWLGH-ANFKLP---GHLSDHSPCIVSIIEAPRP 1478
             + T+   + KSKLDR  VN      EWL H    KL      LSDH P +++       
Sbjct: 182  -RFTWFRGNSKSKLDRCFVN-----PEWLTHYPTLKLSLLNRGLSDHCPLLLN----SSV 231

Query: 1479 RN---RPFKFFNMWASNPEFGNIVATAWEQSVAGTAQFSXXXXXXXXXXXXXXXNEREYS 1649
            RN   +PFKF N W S+P    +V   W++S    +                  NE+ + 
Sbjct: 232  RNWGPKPFKFQNCWLSDPRCMRLVKDTWQKS----SPMGLVQKLKTVKKDLKDWNEKVFG 287

Query: 1650 HISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVAICEAELSFLRQLAKSEHL 1829
            +I + +K+ + E+ +  + + +   DS + E     +    +  + + S+  Q ++ + L
Sbjct: 288  NIEANIKQLEHEINQLDKISNERDLDSFELEKKKKAQVDLWSWMKTKESYWSQQSRIKWL 347

Query: 1830 KNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDFCEP 2009
            K  DR TKFFH +      RN I ++ +++G   +   ++  E   Y+R     + +  P
Sbjct: 348  KQGDRNTKFFHVVASIRKHRNSITSI-EVNGDKISEPEKIKLEAMKYFRKAFKEESYNRP 406

Query: 2010 IDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSWDIVG 2189
            +     L    L+  Q  +L+   + +EI  A+     DKAPGPDG++  F KK+WD++ 
Sbjct: 407  LLEG--LDFKHLTEAQSADLIAPFSHEEIDKAVASCSSDKAPGPDGFNFTFIKKAWDVIK 464

Query: 2190 SEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKIIAAR 2369
             E  + V+EF+ S +L K  N   IAL+PK+       DFRPIS    +YK++ K++  R
Sbjct: 465  EEIYETVQEFWNSSRLPKGCNMAFIALIPKTDSPKGFQDFRPISMVGCVYKIVAKLLTMR 524

Query: 2370 IEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFDSVDW 2549
            ++  M  L+  AQS+FI+GR + ++  +A EL+      + S+  +LK+D  KAFDSV W
Sbjct: 525  LQKVMNSLVGPAQSSFIEGRHILDSALIAGELIDSCKRWKTSS-SLLKIDFHKAFDSVSW 583

Query: 2550 EFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPYLFVI 2729
             FL  TL  +NFP ++   I  CV+++S SV +NGS    FK QKGLRQGDPLSP+LFV+
Sbjct: 584  AFLDWTLEKMNFPIQWRQWIQTCVTTASSSVLINGSPSPPFKLQKGLRQGDPLSPFLFVL 643

Query: 2730 CLEYLSRLLNKNTTVASF-NYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCLQNF 2906
             +E L+ L+NK  ++  +       G L+++HL +ADD L+        ++ I   L  F
Sbjct: 644  VVETLNLLINKAISLGFWEGVEVSKGGLKLSHLQYADDTLIFCAPRIDYLQNIKKVLILF 703

Query: 2907 QNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIHYEP 3086
               SGL+ N  KSSL    + NQ + D       + GS+PF YLG+P+  +  R+  +EP
Sbjct: 704  HLASGLQINFHKSSLIGINVSNQWMKDATASLLCKGGSLPFNYLGLPIGGDSSRIKTWEP 763

Query: 3087 FVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRNFLW 3266
             +++I+  +++W G  LS  GR  LIKS +  +  +++S+ PIP ++ ++I  L R+FLW
Sbjct: 764  ILERISKKLDSWKGRLLSIGGRVTLIKSSISSLPLYFMSLFPIPRSVIEQINKLQRHFLW 823

Query: 3267 ---QSKHPL--VSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQWIHQ 3431
               + K  L  V+WK   L K  GGLG  ++   N +LL K +W     +  LW + I  
Sbjct: 824  SGDRGKRALSQVAWKVIELPKAFGGLGIGNIFHRNLALLFKWIWKFFNDTSPLWRELIWH 883

Query: 3432 KY 3437
            KY
Sbjct: 884  KY 885


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  426 bits (1096), Expect = e-116
 Identities = 238/708 (33%), Positives = 358/708 (50%), Gaps = 7/708 (0%)
 Frame = +3

Query: 1416 LPGHLSDHSPCIVSIIEAPRPRNRPFKFFNMWASNPEFGNIVATAWEQSVAGTAQFSXXX 1595
            LP  +SDH+  +V +    R R  PFKFFN  A   +F  IV+  W  +V G+ QF    
Sbjct: 142  LPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVSAVWATNVWGSKQFQ--- 198

Query: 1596 XXXXXXXXXXXXNEREYSHISSRVKRAKDELERAQQDAFDHPQDSQKQELATTLRHKTVA 1775
                               +  ++K  K++ +                            
Sbjct: 199  -------------------VWRKLKLVKNQFKLLN------------------------- 214

Query: 1776 ICEAELSFLRQLAKSEHLKNSDRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVA 1955
             C      L++ ++ + LK  D+ + FF   + ++  RN IA + + DG           
Sbjct: 215  -CNVVEKLLKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRSDGP---------- 263

Query: 1956 EFTSYYRSLLGTKDFCEPIDMDVILSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAP 2135
                                            +  + L  E T D+I++  F +  +K+P
Sbjct: 264  --------------------------------DLAKSLCNEFTHDDIRAVFFSMNPNKSP 291

Query: 2136 GPDGYSSGFFKKSWDIVGSEF-CDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFR 2312
            GPDG++  FF+K+W ++G      AVKEFF  G LL ++N TII LVPK ++  ++ DFR
Sbjct: 292  GPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFR 351

Query: 2313 PISCCNVIYKVITKIIAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRI 2492
            PISCCN  YK+I K++A R++  +  ++  +QS FI GRR+ +NI LAQE++  Y+    
Sbjct: 352  PISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADG 411

Query: 2493 SNRCILKVDLRKAFDSVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHF 2672
              RC   VD+ KA D+V+W+F+ +TL   N P      I  C+SS+ +SV +NG + G F
Sbjct: 412  QPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFF 471

Query: 2673 KGQKGLRQGDPLSPYLFVICLEYLSRLLNKNTTVA-SFNYHPKCGNLRITHLAFADDLLL 2849
              ++GLRQGDPLSPYLFVI +E LS  + +    +  F YH +C  L ++HL FADDLL+
Sbjct: 472  ARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLM 531

Query: 2850 MSRGDTTSVRIIMDCLQNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPF 3029
               GD  SVR + D   NF++ S LK+N  +S ++ AG+       + ++TNF +G+ P 
Sbjct: 532  FCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPV 591

Query: 3030 RYLGIPLAAEKLRLIHYEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSIL 3209
            RYLGIPL   KLR+    P +D+I T I +W    LS+AGR +LI+SVL  I+ +W S L
Sbjct: 592  RYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHL 651

Query: 3210 PIPTTICDKITSLCRNFLWQSK-----HPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTK 3374
             +P  +   I    R FLW           V+W + CL K EGGLG +D+  WN +L+  
Sbjct: 652  ILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMIS 711

Query: 3375 CLWDIHQKSDTLWIQWIHQKYLSSGSVWTWKVRKEDSPLIRRILEIRD 3518
             +W++   S   W  W+    L   S W   +    S   R++L+IR+
Sbjct: 712  HIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRE 759


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  414 bits (1063), Expect = e-112
 Identities = 233/634 (36%), Positives = 338/634 (53%), Gaps = 22/634 (3%)
 Frame = +3

Query: 1839 DRCTKFFHGMVKRNSKRNHIAAVTKLDGSLTTSTAQVVAEFTSYYRSLLGTKDFCEPIDM 2018
            DR  K FH  +      N I  +   DG + TS   +  E  +Y++  L T     P D 
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTI----PADY 146

Query: 2019 DVI-------LSGNRLSSEQGEELMREVTTDEIKSALFDIGEDKAPGPDGYSSGFFKKSW 2177
            + +       L   R S +    L R VT +EIK  +F + +DK+PGPDGY+S F+K SW
Sbjct: 147  EGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASW 206

Query: 2178 DIVGSEFCDAVKEFFISGKLLKQINHTIIALVPKSSHCPSVGDFRPISCCNVIYKVITKI 2357
            +I+G E   A++ FF  G L K +N TI+AL+PK      + D+RPISCCNV+YK I+KI
Sbjct: 207  EIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKI 266

Query: 2358 IAARIEPFMAHLIDRAQSAFIQGRRMTENIHLAQELLRGYNHKRISNRCILKVDLRKAFD 2537
            +A R++  +   I   QSAF++ R + EN+ LA EL++ Y+   IS RC +K+D+ KAFD
Sbjct: 267  LANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFD 326

Query: 2538 SVDWEFLTSTLIGLNFPEKFASLIMECVSSSSYSVALNGSIHGHFKGQKGLRQGDPLSPY 2717
            S+ W FLT  L  +NFP +F   I  C+S++S+S+ +NG + G+F+  +GLRQG  LSPY
Sbjct: 327  SLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPY 386

Query: 2718 LFVICLEYLSRLLNKNTTVASFNYHPKCGNLRITHLAFADDLLLMSRGDTTSVRIIMDCL 2897
            LFVI ++ LSR+L+K      F YHP+C  L +THL FADDL++++ G   SV  I+  L
Sbjct: 387  LFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVL 446

Query: 2898 QNFQNCSGLKSNALKSSLYTAGIPNQDLLDIQEITNFEIGSMPFRYLGIPLAAEKLRLIH 3077
              F    GLK    K++LY AG+ +     +    +F +G +P RYLG+PL  ++L    
Sbjct: 447  NQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSD 506

Query: 3078 YEPFVDKIATYINAWTGATLSYAGRRELIKSVLQGIECFWLSILPIPTTICDKITSLCRN 3257
            Y P +D+I   I  WT   LS+AGR  LI SVL  I  FW++   +P    ++I  +   
Sbjct: 507  YSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSA 566

Query: 3258 FLWQS-----KHPLVSWKDCCLQKTEGGLGFRDMKAWNHSLLTKCLWDIHQKSDTLWIQW 3422
             LW       K   VSW + C  K EGGLG + ++  N     K +W +    D+LW++W
Sbjct: 567  LLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKW 626

Query: 3423 IHQKYLSSGSVWTWKVRKE-DSPLIRRILEIRDQILTQSGSQEQAITNLAAWHNS----- 3584
                 L   S W+        S + RR+L+ R+   +    +     N + W ++     
Sbjct: 627  TRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKG 686

Query: 3585 ---GKNGTRLAYDF-FSHHSPXAMHKKETSYKRH 3674
                  G R A D   S H   A        KRH
Sbjct: 687  PLINLTGARGAIDMGISRHMTLAEAWSRRRRKRH 720