BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00008631
         (2122 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   660   0.0  
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   658   0.0  
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   614   e-173
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   610   e-172
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        604   e-170
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   602   e-169
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   576   e-161
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   566   e-158
gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus pe...   561   e-157
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              556   e-155
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   556   e-155
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   556   e-155
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     555   e-155
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha...   553   e-155
dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI...   553   e-154
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   548   e-153
gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]                  547   e-153
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      546   e-152
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-...   535   e-149
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   534   e-149

>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  660 bits (1704), Expect = 0.0
 Identities = 382/617 (61%), Positives = 419/617 (67%), Gaps = 30/617 (4%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLD----I 1727
            S LLPQF  LPD F +  KT Q +   L K RD   LRTQC                  I
Sbjct: 2    SYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLGI 61

Query: 1726 EKLQLPSIEVLSNSVVADRS---SATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRG 1556
            EKLQLPSIE+LSNSV A+RS    + ATTTV  I+KLKL S  A+ DSVAP+ PW Y+  
Sbjct: 62   EKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTGA 121

Query: 1555 VALSTEANTKA--ALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNN---S 1391
            V    EANTK   +LA+E  +                                YNN   S
Sbjct: 122  VGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLV-----GYNNLKDS 176

Query: 1390 DSTLAGTPS---TAGIERVHLAQPGT---------VGESEMRWSESK------SSXXXXX 1265
            D+   GT S   TA  E VHLAQPG          +  SEM+W+ S       +      
Sbjct: 177  DNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLE 236

Query: 1264 XXXXXXXXXXXXXXEGISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQD 1085
                            I+V+S                   NVVSVKSGST+RKKRASVQD
Sbjct: 237  PSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQD 296

Query: 1084 VDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAA 905
            VDYSDP              TASEE +LS GIQDLLKLERLQ EL ER GGQPT  QWAA
Sbjct: 297  VDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAA 356

Query: 904  AAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 725
            AAGVDQ TLR R+NYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGA
Sbjct: 357  AAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA 416

Query: 724  EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGR 545
            EKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR QL +ENGR
Sbjct: 417  EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGR 476

Query: 544  HPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLI 365
            HP++ E+AEATGLSMKRL+AVMLTPKAPRSLDQK+GFN++LKPSEV+ADP+AETSEE L 
Sbjct: 477  HPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILT 536

Query: 364  KQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 185
            KQFMR+DL+KVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFR
Sbjct: 537  KQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 596

Query: 184  KLKNKKRTRHLQQYITA 134
            KLKNKKRT+ LQQYI A
Sbjct: 597  KLKNKKRTKFLQQYINA 613


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  658 bits (1698), Expect = 0.0
 Identities = 379/614 (61%), Positives = 418/614 (68%), Gaps = 27/614 (4%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLD----I 1727
            S LLPQF  LPD F +  KT Q +   L K RD   LRTQC                  I
Sbjct: 2    SYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLGI 61

Query: 1726 EKLQLPSIEVLSNSVVADRS---SATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRG 1556
            EKLQLPSIE+LSNSV A+RS    + ATTTV  I+KLKL S  A+ DSVAP+ PW Y+  
Sbjct: 62   EKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTGA 121

Query: 1555 VALSTEANTKA--ALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSDST 1382
            V    EANTK   +LA+E  +                               + N+SD+ 
Sbjct: 122  VGPPAEANTKPENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYN--NLNDSDNV 179

Query: 1381 LAGTPS---TAGIERVHLAQPGT---------VGESEMRWS------ESKSSXXXXXXXX 1256
              GT S   TA  E VHLAQPG          +  SEM+W+      E+ +         
Sbjct: 180  GRGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLEPSP 239

Query: 1255 XXXXXXXXXXXEGISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDY 1076
                         I+V+S                   NVV+VKSGST+RKKRASVQDVDY
Sbjct: 240  EELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQDVDY 299

Query: 1075 SDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAG 896
            SDP              TASEE +LS GIQDLLKLERLQ EL ER GGQPT  QWAAAAG
Sbjct: 300  SDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAG 359

Query: 895  VDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 716
            VDQ TLR R+NYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKF
Sbjct: 360  VDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKF 419

Query: 715  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPD 536
            DA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEAR QL +ENGRHP+
Sbjct: 420  DATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGRHPN 479

Query: 535  EEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQF 356
            + E+AEA GLSMKRL+AVMLTPKAPRSLDQKIGFN++LKPSEV+ADPEAETSEE L KQF
Sbjct: 480  DAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILTKQF 539

Query: 355  MREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 176
            MR+DL+KVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRKLK
Sbjct: 540  MRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLK 599

Query: 175  NKKRTRHLQQYITA 134
            NKKRT+ LQQYI A
Sbjct: 600  NKKRTKFLQQYINA 613


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  614 bits (1583), Expect = e-173
 Identities = 352/604 (58%), Positives = 403/604 (66%), Gaps = 20/604 (3%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKT---YQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIE 1724
            SCLLPQFKC PDTF++ F+T   +QH + H  K ++P   RT C                
Sbjct: 25   SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHC---------------- 68

Query: 1723 KLQLPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALS 1544
                    VLS +     S++TA TTV+ +EKL+L SL AHS++VA    W Y   V  S
Sbjct: 69   --------VLSTT---SPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPS 117

Query: 1543 TEANTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSD-------- 1388
            TE N   +LATE L +                             V+++NS         
Sbjct: 118  TEENLGTSLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAI 177

Query: 1387 STLAGTPSTAGIERVHLAQPGTVGES-------EMRWSESK--SSXXXXXXXXXXXXXXX 1235
            S  A T ++   +     +   +G+S       E  +SE +  +                
Sbjct: 178  SLSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLE 237

Query: 1234 XXXXEGISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXX 1055
                + I+VRS                   NV+SVKSGST+R+KR SVQ+VDYSDP    
Sbjct: 238  EQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYL 297

Query: 1054 XXXXXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLR 875
                      TA+EE +LS GIQDLLKLE L+E L+ER GG PT AQWAAAAGVDQ+ LR
Sbjct: 298  RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357

Query: 874  TRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 695
             R+NYGILCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Sbjct: 358  RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 417

Query: 694  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEA 515
            FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR QLYSENGRHP+ EE+AEA
Sbjct: 418  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 477

Query: 514  TGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQK 335
            TGLSMKRL AV+LTPKAPRSLDQK G NQNLKPSEVIADPEAET+E+ LIK+FM+EDL+K
Sbjct: 478  TGLSMKRLHAVLLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 537

Query: 334  VLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRH 155
            VLDTLNPRE+QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT+H
Sbjct: 538  VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 597

Query: 154  LQQY 143
            L QY
Sbjct: 598  LMQY 601


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  610 bits (1574), Expect = e-172
 Identities = 350/604 (57%), Positives = 401/604 (66%), Gaps = 20/604 (3%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKT---YQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIE 1724
            SCLLPQFKC PDTF++ F+T   +QH + H  K ++P   RT C                
Sbjct: 25   SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHC---------------- 68

Query: 1723 KLQLPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALS 1544
                    VLS +     S++TA TTV+ +EKL+L SL AHS++VA    W Y   V  S
Sbjct: 69   --------VLSTT---SPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPS 117

Query: 1543 TEANTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSD-------- 1388
            TE N   +LATE L +                             V+++NS         
Sbjct: 118  TEENLGTSLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAI 177

Query: 1387 STLAGTPSTAGIERVHLAQPGTVGES-------EMRWSESK--SSXXXXXXXXXXXXXXX 1235
            S  A T ++   +     +   +G+S       E  +SE +  +                
Sbjct: 178  SLSADTSTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLE 237

Query: 1234 XXXXEGISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXX 1055
                + I+VRS                   NV+SVKSGST R+KR SVQ+VDYSDP    
Sbjct: 238  EQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYL 297

Query: 1054 XXXXXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLR 875
                      TA+EE +LS GIQDLLKLE L+E L+ER GG PT AQWAAAAGVDQ+ LR
Sbjct: 298  RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357

Query: 874  TRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 695
             R+NYGILCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Sbjct: 358  RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 417

Query: 694  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEA 515
            FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR QLYSENGRHP+ EE+A+A
Sbjct: 418  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKA 477

Query: 514  TGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQK 335
            TGLSMKRL AV+L PKAPRSLDQK G NQNLKPSEVIADPEAET+E+ LIK+FM+EDL+K
Sbjct: 478  TGLSMKRLHAVLLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 537

Query: 334  VLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRH 155
            VLDTLNPRE+QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT+H
Sbjct: 538  VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 597

Query: 154  LQQY 143
            L QY
Sbjct: 598  LMQY 601


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  604 bits (1557), Expect = e-170
 Identities = 356/619 (57%), Positives = 407/619 (65%), Gaps = 34/619 (5%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLL---KGRDPCQLRTQCXXXXXXXXXXXXLDIE 1724
            SCLLPQFKC PDTF++ F+T  H + H L    G        QC              I 
Sbjct: 2    SCLLPQFKCQPDTFSIQFRT--HHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIF 59

Query: 1723 KLQLPSIEVL---SNSVVADRSSATATTT--VVHIEKLKLQSLAAHSDSVAPESPWRYSR 1559
             +     E +   +  V++  SS+T+TT   V+ +EKL+L S  AH +SVA + PW Y  
Sbjct: 60   VVLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIG 119

Query: 1558 GVALSTEANTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS--YNNSDS 1385
                 +EA+  A LAT+NLLT                             ++  YN + +
Sbjct: 120  ATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKT 179

Query: 1384 TLAGTPSTAG------------IERVHLAQPGTVGESEMRWSESKSSXXXXXXXXXXXXX 1241
             +    S A              ER  +       ESEM   +S+ +             
Sbjct: 180  EMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNE 239

Query: 1240 XXXXXXE----GISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYS 1073
                  E     I+VRS                   NVVSVKSGST RK+R ++QDVDYS
Sbjct: 240  ELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYS 299

Query: 1072 DPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGV 893
            DP              TA+EE +LSEGIQDLLKLERLQEELAER GGQPT AQWAAAAGV
Sbjct: 300  DPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGV 359

Query: 892  DQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 713
            DQKTLR+R+NYG+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD
Sbjct: 360  DQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 419

Query: 712  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDE 533
            ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR QLYSENGRHPD 
Sbjct: 420  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDN 479

Query: 532  EELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKPS--------EVIADPEAETSE 377
            EE+AEATGLSMKRL+AV+LTPKAPRSLDQKIG NQNLKPS        EVIADPEAET+E
Sbjct: 480  EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAE 539

Query: 376  ETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 197
            + LIKQFMR+DL+KVLD+L+ RE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIES
Sbjct: 540  DMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 599

Query: 196  SAFRKLKNKKRTRHLQQYI 140
             AFRKLKNKKRT+HLQQY+
Sbjct: 600  CAFRKLKNKKRTKHLQQYL 618


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  602 bits (1551), Expect = e-169
 Identities = 345/599 (57%), Positives = 393/599 (65%), Gaps = 12/599 (2%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKT-YQH--SAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIE 1724
            SCLLPQFKC PDTF++ F+  Y H  +     K R+P   R QC                
Sbjct: 3    SCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQC---------------- 46

Query: 1723 KLQLPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSR-GVAL 1547
                          +   +S + +T V+ +EKL+L S  A SDS+AP SPW Y+  G  L
Sbjct: 47   --------------ILSTTSPSTSTAVLDLEKLRLPSFEAPSDSIAPNSPWTYATFGSTL 92

Query: 1546 STEANTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSDSTLAGT- 1370
            +TE    +  A                                    S   S ST+  + 
Sbjct: 93   ATETLITSDEAVIAAAAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASR 152

Query: 1369 -PSTAGIERVHL------AQPGTVGESEMRWSESKSSXXXXXXXXXXXXXXXXXXXEGIS 1211
             P     ER  +       + G   ES M+ S  +S                     GI+
Sbjct: 153  WPQFTETERARIIGDSVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSE--GIA 210

Query: 1210 VRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXX 1031
            VRS                   +VVSVK GST++KKR S+Q+VDYSDP            
Sbjct: 211  VRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSR 270

Query: 1030 XXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGIL 851
              TASEE +LS  IQDLLKLERLQEELAER+GGQPT AQWAAAAGVDQ+TLR R+N+G +
Sbjct: 271  LLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTI 330

Query: 850  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 671
            CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 331  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 390

Query: 670  IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRL 491
            IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR QLYSENGRHPD+EE+AEA GLSMKRL
Sbjct: 391  IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRL 450

Query: 490  SAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPR 311
            SAV+LTPKAPRSLDQKIG N +LKPSEVIADPEAET+EE L+KQFM++DL+KVL+TLNPR
Sbjct: 451  SAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPR 510

Query: 310  EKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYITA 134
            E QVVRWRFGLEDGRMKTLQEIGE+MGVSRERIRQIESSAFRKLKNKKRT+ L+QY+ A
Sbjct: 511  ETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  576 bits (1484), Expect = e-161
 Identities = 323/520 (62%), Positives = 364/520 (70%), Gaps = 17/520 (3%)
 Frame = -1

Query: 1651 TTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALSTEANTKAALATENLLTGXXXXXXX 1472
            TTV+ +EKL+L SL AHS++VA    W Y   V  STE N   +LATE L +        
Sbjct: 2    TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61

Query: 1471 XXXXXXXXXXXXXXXXXXXXXVSYNNSD--------STLAGTPSTAGIERVHLAQPGTVG 1316
                                 V+++NS         S  A T ++   +     +   +G
Sbjct: 62   SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIG 121

Query: 1315 ES-------EMRWSESK--SSXXXXXXXXXXXXXXXXXXXEGISVRSXXXXXXXXXXXXX 1163
            +S       E  +SE +  +                    + I+VRS             
Sbjct: 122  DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 181

Query: 1162 XXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQD 983
                  NV+SVKSGST+R+KR SVQ+VDYSDP              TA+EE +LS GIQD
Sbjct: 182  AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241

Query: 982  LLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISI 803
            LLKLE L+E L+ER GG PT AQWAAAAGVDQ+ LR R+NYGILCKDKMI SNIRLVISI
Sbjct: 242  LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301

Query: 802  AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 623
            AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 302  AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361

Query: 622  RLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQK 443
            RLPFHMVEATYRVKEAR QLYSENGRHP+ EE+AEATGLSMKRL AV+LTPKAPRSLDQK
Sbjct: 362  RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQK 421

Query: 442  IGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRM 263
             G NQNLKPSEVIADPEAET+E+ LIK+FM+EDL+KVLDTLNPRE+QVVRWRFGLEDGRM
Sbjct: 422  FGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481

Query: 262  KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHLQQY 143
            KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT+HL QY
Sbjct: 482  KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQY 521


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  566 bits (1458), Expect = e-158
 Identities = 323/601 (53%), Positives = 375/601 (62%), Gaps = 14/601 (2%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIEKLQ 1715
            SCLLPQFKC PD+F++ F+T   S     + + P   + QC                   
Sbjct: 3    SCLLPQFKCQPDSFSIHFRT---SFSVSKQNKGPVFFQPQC------------------- 40

Query: 1714 LPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALSTEA 1535
                        A  +S    T+ + + KL+L S    SDS   +  W Y+  V  STEA
Sbjct: 41   ------------AVTTSPALLTSTLDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEA 88

Query: 1534 NTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSDSTLAGTPST-- 1361
                ALA+E LLT                                +N+ + L  + +   
Sbjct: 89   KYLEALASETLLTSDEAVVAAAAAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKR 148

Query: 1360 -----------AGI-ERVHLAQPGTVGESEMRWSESKSSXXXXXXXXXXXXXXXXXXXEG 1217
                       AGI   + ++  G V +     + +K S                     
Sbjct: 149  SKWDQFTEKERAGILGHLAVSDTGIVSDKSTAPASNKESSADLISEIQEVELVEEQPAAS 208

Query: 1216 ISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXX 1037
            ++VRS                    + SVK+GS+ RKKR   Q+VD++DP          
Sbjct: 209  LAVRSTRQTERKARRAKGLEKSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSS 268

Query: 1036 XXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYG 857
                T  EEH+LS GIQDLLKLERLQ EL ER G QPT +QWA+AAGVDQK+LR R+NYG
Sbjct: 269  SKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYG 328

Query: 856  ILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 677
              CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 329  TQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 388

Query: 676  WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEATGLSMK 497
            WWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEAR QLY+E GRHP+ EE+AEATGLSMK
Sbjct: 389  WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEKGRHPENEEVAEATGLSMK 448

Query: 496  RLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKVLDTLN 317
            RL AV+L+PK PRSLDQKIG NQNLKPSEVIADPEAETSE+ LIKQFMREDL KVLD+L 
Sbjct: 449  RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDILIKQFMREDLDKVLDSLG 508

Query: 316  PREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYIT 137
             REKQV+RWRFG+EDGRMKTLQEIGELMGVSRER+RQIESSAFRKLKNKKR+ HLQQY+ 
Sbjct: 509  TREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLV 568

Query: 136  A 134
            A
Sbjct: 569  A 569


>gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  561 bits (1445), Expect = e-157
 Identities = 282/336 (83%), Positives = 311/336 (92%)
 Frame = -1

Query: 1141 VVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERL 962
            VVSVKSGST+RKKRAS+QDVD+SDP              TA+EE +LSEGIQ+LLKLE+L
Sbjct: 66   VVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKL 125

Query: 961  QEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGA 782
            QEEL +R GGQPTIAQWAAAAGVDQKTLR R+NYGILCKDKMIKSNIRLVISIAKNYQGA
Sbjct: 126  QEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGA 185

Query: 781  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 602
            GMNLQDLVQ+GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 186  GMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 245

Query: 601  EATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNL 422
            EATYRV+EA+ QLYS NGRHP++EE+AEATGLSMKRL+AV+LTPKAPRSL+QKIG NQNL
Sbjct: 246  EATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 305

Query: 421  KPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIG 242
            KPSEVIADPEAET+E+ L+K+FM++DL+KVLD+LN REKQVVRWRFGLEDGRMKTLQEIG
Sbjct: 306  KPSEVIADPEAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIG 365

Query: 241  ELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYITA 134
            ELMGVSRERIRQIES AFRKLKNKKRT+HLQQY+ +
Sbjct: 366  ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 401


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  556 bits (1434), Expect = e-155
 Identities = 280/336 (83%), Positives = 307/336 (91%)
 Frame = -1

Query: 1141 VVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERL 962
            VVSV+SGST+R+KR S+Q+VDYSDP              TA+EE +LSEGIQDLLKLE+L
Sbjct: 240  VVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKL 299

Query: 961  QEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGA 782
            QE+L ER+G +PT AQWAAAAGVDQKTLR R NYGI CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 300  QEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGA 359

Query: 781  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 602
            GMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 360  GMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 419

Query: 601  EATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNL 422
            EATYRVKEAR QLYSENGRHP+ EE+AEATGLSMKRL+AV+LTPKAPRSLDQKIG NQNL
Sbjct: 420  EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNL 479

Query: 421  KPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIG 242
            KPSEVIADP+AET+EE LIKQFMREDL+KVL++LNPREKQV+RWR+GLEDGR KTLQEIG
Sbjct: 480  KPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIG 539

Query: 241  ELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYITA 134
            ELMGVSRERIRQIES AFRKLKNK+RT+HLQQY+ +
Sbjct: 540  ELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  556 bits (1434), Expect = e-155
 Identities = 280/336 (83%), Positives = 307/336 (91%)
 Frame = -1

Query: 1141 VVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERL 962
            VVSV+SGST+R+KR S+Q+VDYSDP              TA+EE +LSEGIQDLLKLE+L
Sbjct: 243  VVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKL 302

Query: 961  QEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGA 782
            QE+L ER+G +PT AQWAAAAGVDQKTLR R NYGI CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 303  QEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGA 362

Query: 781  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 602
            GMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 363  GMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 422

Query: 601  EATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNL 422
            EATYRVKEAR QLYSENGRHP+ EE+AEATGLSMKRL+AV+LTPKAPRSLDQKIG NQNL
Sbjct: 423  EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNL 482

Query: 421  KPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIG 242
            KPSEVIADP+AET+EE LIKQFMREDL+KVL++LNPREKQV+RWR+GLEDGR KTLQEIG
Sbjct: 483  KPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIG 542

Query: 241  ELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYITA 134
            ELMGVSRERIRQIES AFRKLKNK+RT+HLQQY+ +
Sbjct: 543  ELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  556 bits (1433), Expect = e-155
 Identities = 277/334 (82%), Positives = 310/334 (92%)
 Frame = -1

Query: 1141 VVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERL 962
            +VSVKSGST+RKKRAS+QDVD+SDP              TA+EE +LSEGIQ+LLKLE+L
Sbjct: 281  IVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKL 340

Query: 961  QEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGA 782
            QE+LA+R G QPT AQWAAAAGVDQKTLR RVNYGI+CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 341  QEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVISIAKNYQGA 400

Query: 781  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 602
            GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 401  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 460

Query: 601  EATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNL 422
            EATYRV+EA+ QLYS NGRHP++EE+AEATGLSMKRL+AV+LTPKAPRSL+QKIG NQNL
Sbjct: 461  EATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 520

Query: 421  KPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIG 242
            KPS+VIADP+AET+E+ L+K+FM++DL+KVLD+LNPREKQV+RWRFG+EDGRMKTLQEIG
Sbjct: 521  KPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIG 580

Query: 241  ELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYI 140
            ELMGVSRERIRQIES AFRKLKNKKRT+HLQQY+
Sbjct: 581  ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYV 614


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  555 bits (1431), Expect = e-155
 Identities = 279/334 (83%), Positives = 305/334 (91%)
 Frame = -1

Query: 1141 VVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERL 962
            VV+VKSGS +RKKRASVQDVD+SDP              TA+EE +LSEGIQDLLKLE+L
Sbjct: 238  VVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKL 297

Query: 961  QEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGA 782
            QEELAER GG PT AQWAAAAGVDQKTLR R+NYGILCKDKMIKSN+RLVISIAKNYQGA
Sbjct: 298  QEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGA 357

Query: 781  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 602
            GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 358  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 417

Query: 601  EATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNL 422
            EATYRVKEAR QLYSENGR P++EE+AEATGLSMKRL+AV+LTPKAPRSL+QKIG NQNL
Sbjct: 418  EATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 477

Query: 421  KPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIG 242
            KPSE+IADP+AET E+ L +QFM++DL KVLD+LN REKQV+RWRFG++DGRMKTLQEIG
Sbjct: 478  KPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIG 537

Query: 241  ELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYI 140
            ELMGVSRERIRQIES AFRKLKNKKRT+HLQQY+
Sbjct: 538  ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 571


>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
            gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
            polymerase sigma factor sigB; Short=Sigma factor B;
            Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
            1; AltName: Full=RNA polymerase sigma factor sig1;
            Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
            polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
            factor 2; AltName: Full=RNA polymerase sigma factor sigA;
            Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
            gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
            [Arabidopsis thaliana]
            gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
            thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
            thaliana] gi|2597831|emb|CAA75584.1| sigma factor
            [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
            RNA polymerase sigma-subunit [Arabidopsis thaliana]
            gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
            thaliana] gi|133778838|gb|ABO38759.1| At1g08540
            [Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
            polymerase sigma subunit 2 [Arabidopsis thaliana]
          Length = 572

 Score =  553 bits (1426), Expect = e-155
 Identities = 327/604 (54%), Positives = 377/604 (62%), Gaps = 17/604 (2%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIEKLQ 1715
            SCLLPQFKC PD+F++ F+T    AP   KG      + QC                   
Sbjct: 3    SCLLPQFKCPPDSFSIHFRT-SFCAPKHNKGS--VFFQPQC------------------- 40

Query: 1714 LPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALSTEA 1535
                        A  +S    T+++ + KL+L S    SDS+  +  W Y+R    STEA
Sbjct: 41   ------------AVSTSPALLTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEA 88

Query: 1534 NTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSDSTLAGTPSTAG 1355
                ALA+E LLT                               + NS++T   T STA 
Sbjct: 89   KYLEALASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATL--FKNSNNTNLLTSSTAD 146

Query: 1354 I----------ERV----HLA--QPGTVGESEMRWSESKSSXXXXXXXXXXXXXXXXXXX 1223
                       ER     HLA    G V +     + +K S                   
Sbjct: 147  KRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQP 206

Query: 1222 E-GISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXX 1046
               ++VRS                    + SVK+GS+ +KKR   Q+VD++DP       
Sbjct: 207  SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMT 266

Query: 1045 XXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRTRV 866
                   T  EEH+LS GIQDLLKLERLQ EL ER G QPT AQWA+AAGVDQK+LR R+
Sbjct: 267  TSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRI 326

Query: 865  NYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 686
            ++G LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFST
Sbjct: 327  HHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFST 386

Query: 685  YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEATGL 506
            YAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEAR QLYSE G+HP  EE+AEATGL
Sbjct: 387  YAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGL 446

Query: 505  SMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKVLD 326
            SMKRL AV+L+PK PRSLDQKIG NQNLKPSEVIADPEA TSE+ LIK+FMR+DL KVLD
Sbjct: 447  SMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLD 506

Query: 325  TLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHLQQ 146
            +L  REKQV+RWRFG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR  HLQQ
Sbjct: 507  SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQ 566

Query: 145  YITA 134
            Y+ A
Sbjct: 567  YLVA 570


>dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
            thaliana]
          Length = 572

 Score =  553 bits (1424), Expect = e-154
 Identities = 327/604 (54%), Positives = 376/604 (62%), Gaps = 17/604 (2%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIEKLQ 1715
            SCLLPQFKC PD+F++ F+T    AP   KG      + QC                   
Sbjct: 3    SCLLPQFKCPPDSFSIHFRT-SFCAPKHNKGS--VFFQPQC------------------- 40

Query: 1714 LPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALSTEA 1535
                        A  +S    T+++ + KL+L S    SDS+  +  W Y+R    STEA
Sbjct: 41   ------------AVSTSPALLTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEA 88

Query: 1534 NTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSDSTLAGTPSTAG 1355
                ALA+E LLT                               + NS+ T   T STA 
Sbjct: 89   KYLEALASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATL--FKNSNYTNLLTSSTAD 146

Query: 1354 I----------ERV----HLA--QPGTVGESEMRWSESKSSXXXXXXXXXXXXXXXXXXX 1223
                       ER     HLA    G V +     + +K S                   
Sbjct: 147  KRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQP 206

Query: 1222 E-GISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXX 1046
              G++VRS                    + SVK+GS+ +KKR   Q+VD++DP       
Sbjct: 207  SVGLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMT 266

Query: 1045 XXXXXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRTRV 866
                   T  EEH+LS GIQDLLKLERLQ EL ER G QPT AQWA+AAGVDQK+LR R+
Sbjct: 267  TSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRI 326

Query: 865  NYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 686
            ++G LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFST
Sbjct: 327  HHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFST 386

Query: 685  YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEATGL 506
            YAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEAR QLYSE G+HP  EE+AEATGL
Sbjct: 387  YAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGL 446

Query: 505  SMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKVLD 326
            SMKRL AV+L+PK PRSLDQKIG NQNLKPSEVIADPEA T E+ LIK+FMR+DL KVLD
Sbjct: 447  SMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLD 506

Query: 325  TLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHLQQ 146
            +L  REKQV+RWRFG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR  HLQQ
Sbjct: 507  SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQ 566

Query: 145  YITA 134
            Y+ A
Sbjct: 567  YLVA 570


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  548 bits (1413), Expect = e-153
 Identities = 274/334 (82%), Positives = 303/334 (90%)
 Frame = -1

Query: 1141 VVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERL 962
            V+S KSGS++RKKR SVQ+VDYSDP              TA+EE +LSEGIQDLLKLERL
Sbjct: 245  VLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLKLERL 304

Query: 961  QEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGA 782
            QEEL ER+G +PT AQWAAAAGV+Q+TLR R+NYG LCKDKMIKSNIRLVISIAKNYQGA
Sbjct: 305  QEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGA 364

Query: 781  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 602
            GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMV
Sbjct: 365  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMV 424

Query: 601  EATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNL 422
            EATYRVKEAR QL  ENGRHPD++E+AEA GLSMKRL+AV++TPKAPRSL+QKIG NQNL
Sbjct: 425  EATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL 484

Query: 421  KPSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIG 242
            KPSEVI+DPEAET E+ LIKQFM++DL+KVLD+LNPREKQV+RWRFG+EDGRMKTLQEIG
Sbjct: 485  KPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIG 544

Query: 241  ELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYI 140
            E+MGVSRERIRQIES AFRKLKNKKRT+HLQQY+
Sbjct: 545  EIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYV 578


>gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
          Length = 574

 Score =  547 bits (1410), Expect = e-153
 Identities = 325/606 (53%), Positives = 377/606 (62%), Gaps = 19/606 (3%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTYQHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDIEKLQ 1715
            SCLLPQFKC PD+F++ F+T    AP   KG      + QC                   
Sbjct: 3    SCLLPQFKCPPDSFSIHFRT-SFCAPKHNKGS--VFFQPQC------------------- 40

Query: 1714 LPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVALSTEA 1535
                        A  +S    T+++ + KL+L S    SDS+  +  W Y+R    STEA
Sbjct: 41   ------------AVSTSPALLTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEA 88

Query: 1534 NTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSDSTLAGTPSTAG 1355
                ALA+E LLT                               + NS++T   T STA 
Sbjct: 89   KYLEALASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATL--FKNSNNTNLLTSSTAD 146

Query: 1354 I----------ERV----HLA--QPGTVGESEMRWSESKSSXXXXXXXXXXXXXXXXXXX 1223
                       ER     HLA    G V +     + +K S                   
Sbjct: 147  KRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQP 206

Query: 1222 E-GISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXX 1046
               ++VRS                    + SVK+GS+ +KKR   Q+VD++DP       
Sbjct: 207  SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMT 266

Query: 1045 XXXXXXXTAS--EEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRT 872
                     +  EEH+LS GIQDLLKLERLQ EL ER G QPT AQWA+AAGVDQK+LR 
Sbjct: 267  TSSSKLKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQ 326

Query: 871  RVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 692
            R+++G LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKF
Sbjct: 327  RIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKF 386

Query: 691  STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEAT 512
            STYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEAR QLYSE G+HP  EE+AEAT
Sbjct: 387  STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 446

Query: 511  GLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKV 332
            GLSMKRL AV+L+PK PRSLD+KIG NQNLKPSEVIADPEA TSE+ LIK+FMR+DL KV
Sbjct: 447  GLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKV 506

Query: 331  LDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHL 152
            LD+L  REKQV+RWRFG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLKNKKR  HL
Sbjct: 507  LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHL 566

Query: 151  QQYITA 134
            QQY+ A
Sbjct: 567  QQYLVA 572


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  546 bits (1408), Expect = e-152
 Identities = 316/599 (52%), Positives = 382/599 (63%), Gaps = 14/599 (2%)
 Frame = -1

Query: 1894 SCLLPQFKCLPDTFALTFKTY----QHSAPHLLKGRDPCQLRTQCXXXXXXXXXXXXLDI 1727
            +CLLPQFKC PDTF+++   +      SA  LL+ RD    R QC               
Sbjct: 2    TCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPP------- 54

Query: 1726 EKLQLPSIEVLSNSVVADRSSATATTTVVHIEKLKLQSLAAHSDSVAPESPWRYSRGVAL 1547
                                +A A T++  +EKL+L  + ++S+S++  +   +   +  
Sbjct: 55   --------------------TAAAETSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGS 94

Query: 1546 STEANTKAALATENLLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYNNSD----STL 1379
              E     AL  + L+                              +++N+      S L
Sbjct: 95   PAEVKFDTALTAKLLIENEEAVIAAAAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKL 154

Query: 1378 AGTP-STAGIERVHLAQPGTV-----GESEMRWSESKSSXXXXXXXXXXXXXXXXXXXEG 1217
             G     +G + +   Q G++      E+ +R  ++ S                    E 
Sbjct: 155  EGQSLHFSGAQLLENEQVGSMRNFEGSENSLREGDTVSEPADMEPTIEELQLLEVELDES 214

Query: 1216 ISVRSXXXXXXXXXXXXXXXXXXXNVVSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXX 1037
            I+VRS                   NVVSVK GS +RKKR SVQ+VDYSDP          
Sbjct: 215  ITVRSTRQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNS 274

Query: 1036 XXXXTASEEHKLSEGIQDLLKLERLQEELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYG 857
                T+SEE +LS GIQDLLKLE+L +EL  R+G  P+  QWAAAAG+DQ+TLR R+N+G
Sbjct: 275  SRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHG 334

Query: 856  ILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 677
              CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Sbjct: 335  TFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 394

Query: 676  WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARNQLYSENGRHPDEEELAEATGLSMK 497
            WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR QL SENG+ P+ EE+AEATGLSMK
Sbjct: 395  WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMK 454

Query: 496  RLSAVMLTPKAPRSLDQKIGFNQNLKPSEVIADPEAETSEETLIKQFMREDLQKVLDTLN 317
            RL+AV++TPKAPRSLDQKIGFN NLKPSEVIADPEAET+E+ L KQFMR+DL+KVLDTL+
Sbjct: 455  RLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLS 514

Query: 316  PREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTRHLQQYI 140
             REKQV+RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL+NKK+T +LQQY+
Sbjct: 515  SREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573


>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
          Length = 564

 Score =  535 bits (1378), Expect = e-149
 Identities = 263/334 (78%), Positives = 300/334 (89%)
 Frame = -1

Query: 1135 SVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERLQE 956
            S K GS++R+KR S+Q+VDYSDP              T +EE KLS GIQDLLKLE++QE
Sbjct: 231  SFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQE 290

Query: 955  ELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGAGM 776
            +LAER+G QPT AQWAA AGVDQKTLR R+NYGI CKDKMIKSNIRLVISIAKNYQG+GM
Sbjct: 291  DLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGM 350

Query: 775  NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 596
            NLQDLVQEGCRGLV+GAEKFD +KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA
Sbjct: 351  NLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 410

Query: 595  TYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLKP 416
            TYRVKEAR QLYSENGR PD+EE+AEATGLSMKRL+AV++TPKAPRSL+QKIG NQNLKP
Sbjct: 411  TYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKP 470

Query: 415  SEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGEL 236
            SEVI+DP+AET+EE L+KQFM++DL++ LD+LNPRE+QVVRWRFG++DGR KTLQEIGE+
Sbjct: 471  SEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEM 530

Query: 235  MGVSRERIRQIESSAFRKLKNKKRTRHLQQYITA 134
            +GVSRERIRQIESSAF+KLKNKKRT HLQQY+ +
Sbjct: 531  LGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS 564


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  534 bits (1375), Expect = e-149
 Identities = 263/333 (78%), Positives = 302/333 (90%)
 Frame = -1

Query: 1138 VSVKSGSTARKKRASVQDVDYSDPXXXXXXXXXXXXXXTASEEHKLSEGIQDLLKLERLQ 959
            ++VK G+T+R+KRA +Q++DYSDP              TA+EE +LSEGIQDLLKLE+L 
Sbjct: 235  ITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLH 294

Query: 958  EELAERWGGQPTIAQWAAAAGVDQKTLRTRVNYGILCKDKMIKSNIRLVISIAKNYQGAG 779
            +EL ER+GG+PT  QWAAAAG+DQK LR R++YG  CKDKMIKSNIRLVISIAKNYQG G
Sbjct: 295  KELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVG 354

Query: 778  MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 599
            +++QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+
Sbjct: 355  LSIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVD 414

Query: 598  ATYRVKEARNQLYSENGRHPDEEELAEATGLSMKRLSAVMLTPKAPRSLDQKIGFNQNLK 419
            ATYRV+EA  QLYSENGRHP++EE+AEATGLSMKRL+ V+LTPKAPRSLDQKIG NQNLK
Sbjct: 415  ATYRVREATKQLYSENGRHPNDEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLK 474

Query: 418  PSEVIADPEAETSEETLIKQFMREDLQKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGE 239
            PSEVI+DPEAET+E+ L+KQFM++DL+KVL+TLNPREKQVVRWRFGLEDGRMKTLQEIGE
Sbjct: 475  PSEVISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGE 534

Query: 238  LMGVSRERIRQIESSAFRKLKNKKRTRHLQQYI 140
            LMGVSRERIRQIESSAFRKLKNKKRT++L+QY+
Sbjct: 535  LMGVSRERIRQIESSAFRKLKNKKRTKNLRQYL 567