BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00008598
         (5130 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  2778   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  2774   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1898   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1889   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...  1713   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1687   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1667   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1666   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1592   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1586   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1555   0.0  
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...  1554   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1546   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1543   0.0  
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...  1519   0.0  
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...  1513   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1499   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...  1459   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...  1436   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...  1431   0.0  

>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 2778 bits (7201), Expect = 0.0
 Identities = 1398/1638 (85%), Positives = 1462/1638 (89%), Gaps = 19/1638 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP+GLYDPAMGPLD  S CK C + +  CSGHCGHIELVSPVYNPLLFNMLHNLLQRTC
Sbjct: 42   PVPNGLYDPAMGPLDHYSQCKFCSQSN--CSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 99

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            FYCFHFRASRAEVEKCVSELELIAKGDV+GAKM+  +SPD STD+E+SEGSHMSCT+DDL
Sbjct: 100  FYCFHFRASRAEVEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCTMDDL 159

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMDIS 4589
            N++DH EYNKRPSWDNFQFTEAMAVI+RILKTKTEKCSNCKAKNPKI KPSFGRFHMDIS
Sbjct: 160  NVRDHCEYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDIS 219

Query: 4588 SKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEA---------DGLENSKAHG 4436
            +K+IRENY+N+G+RFNLH TGGSEENPS EVVNATEPLGEA         DG+ENSK   
Sbjct: 220  NKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKGRK 279

Query: 4435 RQGGDQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAG 4256
            RQGGDQSDV+EQQ+DSFSVA+LPSQVR+IIEHLWENEAPLCTFFCDIQSQHRNT GKVAG
Sbjct: 280  RQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAG 339

Query: 4255 PSMFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIIS 4076
            PSMFFLDS+LVPP+KFRPPAKGGDS+MEHPHTVLLGKVI +NIALGNAHIN+AGRSKIIS
Sbjct: 340  PSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKIIS 399

Query: 4075 RLMDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISP 3896
            RLMDLQQSVNVLFDSKTA+GPGQKDVGSGICQ+LEKKEGIFRQKMMGKRVNFACRSVISP
Sbjct: 400  RLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISP 459

Query: 3895 DPYLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLP 3716
            DPYL+VNEIGIPPYFA RLTYPER+TPWNAVKMR+A+INGPENHPGA+SFADRI+TVKLP
Sbjct: 460  DPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLP 519

Query: 3715 SSKKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIM 3536
            S+KKMR AISRKLPSSRGAVTQSGRN+EYEFEGKVV RHLQDGD+VLVNRQPTLHKPSIM
Sbjct: 520  SNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIM 579

Query: 3535 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT 3356
            AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT
Sbjct: 580  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT 639

Query: 3355 KGDTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVD 3176
            KGDTVRGLIQDHIVGAV+LTMKNTFL+LHEFNQLLYGSGVFAAGP PTSGNHS KVS+VD
Sbjct: 640  KGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVD 699

Query: 3175 SEGVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVE 2996
             EGVVQT+LPAVWKPKPLWTGKQVITALLNHLTNGC PCTVKNKGKIPYAYFLS+SRLVE
Sbjct: 700  FEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVE 759

Query: 2995 YQSREEEEDRTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSR 2816
            YQSREE+EDRTAEN+FLIWKNELVRGVIDKAQFGKFGLVHTIQELYG+NKAGILLSALSR
Sbjct: 760  YQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSR 819

Query: 2815 LFTIFLQLHGFTCGIDDLVILPHYDIRRKXXXXXXXXXXEAHCDFVKFKRGEIGPLELQL 2636
            LFTIFLQLHGFTCGIDDLVILPHYDIRRK          EAHCDFVKFKRGEIGPLELQL
Sbjct: 820  LFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQL 879

Query: 2635 EIERAISSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG 2456
            EIE+AISSNKE ATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG
Sbjct: 880  EIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG 939

Query: 2455 STVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQEY 2276
            STVNFQQISSYLGQQELEGKRVPRMVSGKTLP FP WDCASRAGGYVSDRFLSGLRPQEY
Sbjct: 940  STVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQEY 999

Query: 2275 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV 2096
            YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV
Sbjct: 1000 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV 1059

Query: 2095 DVHRTSFLKNFKALKNNQETICQKLRHGQKLNSYIEKLPDGLEEKVKHFWXXXXXXXXXX 1916
            DVHRTSFLKNFKALKNNQETICQKLRHG KLNSYIEKLPDGL EKVKHFW          
Sbjct: 1060 DVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHFWESKTKKLEKK 1119

Query: 1915 XXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF 1736
                    E+VKQLKEEE DFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF
Sbjct: 1120 LGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF 1179

Query: 1735 HLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITVAD 1556
            HLAGRGEMNVTLGIPRLQEILMTAS+ IKTPIMTCPFLGWK K DAQSLLAKVKKITVAD
Sbjct: 1180 HLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKNDAQSLLAKVKKITVAD 1239

Query: 1555 MIESMEVNLLPLSIHNHQVCQLYKLTVKLKKHDFVSSEDCEYTLKYVFLRELEDAIESHL 1376
            MIESMEV LLPLSI+NHQV QLYKLTVKLKKHDFVSSEDCEYTLK+VFLRELEDAIESHL
Sbjct: 1240 MIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIESHL 1299

Query: 1375 SLLSKINGIQNFKSSLESEDSNETEENASSARHXXXXXXXXXXXXXXXXXDLGSDAQKRK 1196
            +LLSKINGIQNFK+S ES DS+ETEENASS R                  DL SDAQKRK
Sbjct: 1300 ALLSKINGIQNFKTSSESVDSDETEENASSTRREEEMLDDDDDDEDERTEDLSSDAQKRK 1359

Query: 1195 QQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEIGNRDEEEIGDHGN---------- 1046
            QQ                          EKS Q  EI N DEEE GD GN          
Sbjct: 1360 QQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGDEEENGDRGNEEHTSKLQST 1419

Query: 1045 EEDISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHFRFVNEPHILLA 866
            EEDISN                                 VEGLHFEVHFRFVNEPHILLA
Sbjct: 1420 EEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFEVHFRFVNEPHILLA 1479

Query: 865  QVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTKKQSQDNDSAYWALKAAGID 686
            QVAQKTAKKVYV+NSGKIDQCRM+KYEVTENTVMWDE QTK+Q QD+DSAYWALKAAG+D
Sbjct: 1480 QVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDENQTKQQRQDSDSAYWALKAAGVD 1539

Query: 685  FGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFGIYGVEIDFRHLSLI 506
            FGTFWEMQDDLDV+RIYTNNIRAMLNTYGVEAARASI+REVKTVFGIYGVEIDFRHLSLI
Sbjct: 1540 FGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKTVFGIYGVEIDFRHLSLI 1599

Query: 505  ADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLTDYLETPSSRICLG 326
            AD+MTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAA+HGLTD LETPSSRICLG
Sbjct: 1600 ADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAAHGLTDNLETPSSRICLG 1659

Query: 325  LPVKMGTGCFDIMQKLDI 272
            LPVKMGTGCFDIMQ+LDI
Sbjct: 1660 LPVKMGTGCFDIMQELDI 1677


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 2774 bits (7191), Expect = 0.0
 Identities = 1402/1640 (85%), Positives = 1467/1640 (89%), Gaps = 21/1640 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP+GLYDPAMGPLD  S CK C + +  CSGHCGHIELVSPVYNPLLFNMLHNLLQRTC
Sbjct: 42   PVPNGLYDPAMGPLDHYSQCKFCCQSN--CSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 99

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            FYCFHFRASRAEVEKCVSELELIAKGDV+GAKM+  +SPD STD+E+SEGSHMSC +DDL
Sbjct: 100  FYCFHFRASRAEVEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCAMDDL 159

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMDIS 4589
            NMQDH EYNKRPSWDNFQFTEAMAVI+RILKTKTEKCSNCKAKNPKI KPSFGRFHMDIS
Sbjct: 160  NMQDHREYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDIS 219

Query: 4588 SKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEA---------DGLENSKAHG 4436
            +K+IRENY+N+G+RFNLH TGGSEENPS EVVNATEPLGEA         DG+ENSKA  
Sbjct: 220  NKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKARK 279

Query: 4435 RQGGDQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAG 4256
            RQGGDQSDV+EQQ+DSFSVA+LPSQVR+IIEHLWENEAPLCTFFCDIQSQH NT GKVAG
Sbjct: 280  RQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVAG 339

Query: 4255 PSMFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIIS 4076
            PSMFFLDS+LVPPIKFRPPAKGGDS+MEHPHTVLLGKV+ +NIALGNAHIN+AGRSKIIS
Sbjct: 340  PSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKIIS 399

Query: 4075 RLMDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISP 3896
            RLMDLQQSVNVLFDSKTA+GPGQKDVGSGICQ+LEKKEGIFRQKMMGKRVNFACRSVISP
Sbjct: 400  RLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISP 459

Query: 3895 DPYLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLP 3716
            DPYL+VNEIGIPPYFALRLTYPER+TPWNAVKMR+A+INGPENHPGAVSFADRI+TVKLP
Sbjct: 460  DPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLP 519

Query: 3715 SSKKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIM 3536
            S+KKMR AISRKLPSSRGAVTQSGRN+EYEFEGKVV RHLQDGD+VLVNRQPTLHKPSIM
Sbjct: 520  SNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIM 579

Query: 3535 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT 3356
            AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT
Sbjct: 580  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT 639

Query: 3355 KGDTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVD 3176
            KGDTVRGLIQDHIVGAV+LTMKNTFLTLHEFNQLLYGSGVFAAGP PTSGNHS KVSVVD
Sbjct: 640  KGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVD 699

Query: 3175 SEGVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVE 2996
             EGVVQT+LPAVWKPKPLWTGKQVITALLNHLT GCAPCTVKNKGKIPY YFLS+SRLVE
Sbjct: 700  FEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVE 759

Query: 2995 YQSREEEEDRTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSR 2816
            YQSREE+EDRTAEN+FLIWKNELVRGVIDKAQFGKFGLVHTIQELYG+NKAGILLSALSR
Sbjct: 760  YQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSR 819

Query: 2815 LFTIFLQLHGFTCGIDDLVILPHYDIRRKXXXXXXXXXXEAHCDFVKFKRGEIGPLELQL 2636
            LFTIFLQLHGFTCG+DDLVILPHYDIRRK          EAHCDFVKFKRGEIGPLELQL
Sbjct: 820  LFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQL 879

Query: 2635 EIERAISSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG 2456
            EIE+A+SSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG
Sbjct: 880  EIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG 939

Query: 2455 STVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQEY 2276
            STVNFQQISSYLGQQELEGKRVPRMVSGKTLP FPPWDCASRAGGYVSDRFLSGLRPQEY
Sbjct: 940  STVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQEY 999

Query: 2275 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV 2096
            YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV
Sbjct: 1000 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV 1059

Query: 2095 DVHRTSFLKNFKALKNNQETICQKLRHGQKLNSYIEKLPDGLEEKVKHFWXXXXXXXXXX 1916
            DVHRTSFLKNFKALKNNQETICQKLRHG+KLNSYIEKLPDGLEEKVKHFW          
Sbjct: 1060 DVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHFWEKRTKKLEKK 1119

Query: 1915 XXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF 1736
                    E+VKQLKEEE DFLELV QKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF
Sbjct: 1120 LGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF 1179

Query: 1735 HLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITVAD 1556
            HLAGRGEMNVTLGIPRLQEILMTAS+ IKTPI+TCPFLGW+ K DAQSLLAKVKKITVAD
Sbjct: 1180 HLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKNDAQSLLAKVKKITVAD 1239

Query: 1555 MIESMEVNLLPLSIHNHQVCQLYKLTVKLKKHDFVSSEDCEYTLKYVFLRELEDAIESHL 1376
            MIESMEV LLPLSI+NHQV QLYKLTVKLKKHDFVSSEDCEYTLK+VFLRELEDAIESHL
Sbjct: 1240 MIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIESHL 1299

Query: 1375 SLLSKINGIQNFKSSLESEDSNETEENASSARHXXXXXXXXXXXXXXXXXDLGSDAQKRK 1196
            +LLSKINGIQNFK+S ES DS+ETEENASS RH                 DL SDAQKRK
Sbjct: 1300 ALLSKINGIQNFKTSSESVDSDETEENASSTRH--EEEMLDDEDEDERTEDLSSDAQKRK 1357

Query: 1195 QQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEIGNRDEEEIGDHGNEE-------- 1040
            QQ                          EKS Q  EI N DEEEIG+ GNEE        
Sbjct: 1358 QQ--TTDEMDYDDDENEDEAETTAEIEDEKSEQTDEIDNGDEEEIGNRGNEEQMSKLQST 1415

Query: 1039 --DISN--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHFRFVNEPHIL 872
              DISN                                   VEGLHFEVHFRFVNEPHIL
Sbjct: 1416 EDDISNTKSSKSKTKTKTTVKQNKKKERRSKKDSDRCVFVDVEGLHFEVHFRFVNEPHIL 1475

Query: 871  LAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTKKQSQDNDSAYWALKAAG 692
            LAQVAQKTAKKVY++NSGKIDQCRM+KYEVTENTVMWDE QTK+QSQD+DSAYWALKAAG
Sbjct: 1476 LAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQTKQQSQDSDSAYWALKAAG 1535

Query: 691  IDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFGIYGVEIDFRHLS 512
            +DFGTFWEMQDDLDV+RIYTNNIRAMLNTYGVEAARASI+REVKTVFGIYGVEIDFRHLS
Sbjct: 1536 VDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKTVFGIYGVEIDFRHLS 1595

Query: 511  LIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLTDYLETPSSRIC 332
            LIAD+MTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAA+HGLTD LETPSSRIC
Sbjct: 1596 LIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAAHGLTDNLETPSSRIC 1655

Query: 331  LGLPVKMGTGCFDIMQKLDI 272
            LGLPVKMGTGCFDIMQKLDI
Sbjct: 1656 LGLPVKMGTGCFDIMQKLDI 1675


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1898 bits (4916), Expect = 0.0
 Identities = 988/1665 (59%), Positives = 1203/1665 (72%), Gaps = 46/1665 (2%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP GLYDPA+G +D+++PC+SCG+RSF+C GHCGHI+LVS VYNPLLFN+LHNLLQ+TC
Sbjct: 94   PVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTC 153

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSC--TID 4775
            F+C HF+ S + V+K VS+LELI+KGDV+GAK +  +SP  S+  E S+GSH+SC  T++
Sbjct: 154  FFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVN 213

Query: 4774 DLNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHM- 4598
                 + S + K+  W + Q  EAM+V++  LK K   C NCKAK+P+++KP+FG FHM 
Sbjct: 214  SSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMA 273

Query: 4597 DISSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHG------ 4436
             +S  + R N +  G +     +  +EE  S+EV N  +     DG++  + H       
Sbjct: 274  GLSDAQTRANVIR-GSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTD 332

Query: 4435 -----------RQGGDQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQS 4289
                       R+G        +Q+  FS   LPS+VR+I+E LWENEA LC+F  DI  
Sbjct: 333  GIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQ 392

Query: 4288 QHRNTPGKVAGPSMFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAH 4109
            +     G  AG SMFFL+++LVPPIKFRPP+KG  SVMEHP TVLLGKV+ +NIALGNAH
Sbjct: 393  ERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAH 452

Query: 4108 INQAGRSKIISRLMDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKR 3929
             N + RSKIISR MDLQQS+NVLFD KTAAG GQ+D GSGICQLLEKKEG+FRQKMMGKR
Sbjct: 453  ANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKR 512

Query: 3928 VNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVS 3749
            VNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN VK+R+AIINGPE HPGA  
Sbjct: 513  VNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATH 572

Query: 3748 FADRISTVKLPSSKKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVN 3569
            + D++STVKL  +KKMR +ISRKLPSSRG V Q GR+ + EFEGK+V RHLQDGDIVLVN
Sbjct: 573  YVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVN 632

Query: 3568 RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNI 3389
            RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNI
Sbjct: 633  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNI 692

Query: 3388 VNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTS 3209
            VNAN QYIVP++GD +RGLIQDHIV AVLLT K+TFLT  ++NQLLY SG+ ++G G   
Sbjct: 693  VNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFI 751

Query: 3208 GNHSKKVSVVDSEGVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPY 3029
            G   KKVSV+DSE  +Q +LPA+WKP+PLW+GKQVITA+LNH+T G  P T +  GKIP 
Sbjct: 752  GKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPR 811

Query: 3028 AYFLSQSRLVEYQS----------REEE--EDRTAENKFLIWKNELVRGVIDKAQFGKFG 2885
             YF   S + E +S          R+E+  E +  E K LI KNELVRGVIDKAQF K+G
Sbjct: 812  EYF--GSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYG 869

Query: 2884 LVHTIQELYGANKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRK-XXXXXXX 2708
            LVH +QELYG+N AGILLS LSRLFT+FLQ+HGFTCG+DDL+I P+YDI RK        
Sbjct: 870  LVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSEN 929

Query: 2707 XXXEAHCDFVKFKRGEIGPLELQLEIERAISSNKEAATAALDMKMKNKLANKGSQFNKEL 2528
                 HC F+    G+I P++LQ+E+E+ I SN EAA   LD  MKN+L    S+ NK+L
Sbjct: 930  IGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDL 989

Query: 2527 LLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPP 2348
            LLKGL+KPFP+NC++LMT TGAKGSTVNF QISS+LGQQ+LEGKRVPRMVSGKTLP FPP
Sbjct: 990  LLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPP 1049

Query: 2347 WDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK 2168
            WDCA+RAGG++SDRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK
Sbjct: 1050 WDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1109

Query: 2167 VCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGQKLNSYIE 1988
            VCYDYTVRD+DGSI+QF YG+DGVDVH+TSF+  F+AL  N+E +C+K     K N YI+
Sbjct: 1110 VCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQ 1169

Query: 1987 KLPDGLEEKVKHFWXXXXXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADS 1808
            KLP  L +K K F                          +++ DF+ LV QKY SSLA  
Sbjct: 1170 KLPKELRKKTKKFIEGFMEERQDFDN------------MKKQKDFVNLVKQKYISSLAQP 1217

Query: 1807 GEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCP 1628
            GEPVGVLA QSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++DIKTPIMTCP
Sbjct: 1218 GEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCP 1277

Query: 1627 FLGWKPKGDAQSLLAKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKK----- 1463
                + K DA+ L AK+KK+TVAD+ ESMEV+++P ++ +HQ C +YKL +KL +     
Sbjct: 1278 LQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYP 1337

Query: 1462 -HDFVSSEDCEYTLKYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENAS- 1289
             H  +S EDCE TL+ VF+RELEDAI++HL LLSKI+GI+NF     S  S ET+E+AS 
Sbjct: 1338 PHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASG 1397

Query: 1288 SARHXXXXXXXXXXXXXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXE 1109
                                 DLG DAQKRKQQ                           
Sbjct: 1398 DGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEI 1457

Query: 1108 KSVQGQ-EIGNRDEEEIGDHGNEED--ISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 938
              V+ + EI N +E  I D  +E+    S                               
Sbjct: 1458 DLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAI 1517

Query: 937  XXXVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWD 758
                +G +FEVHFRF NEPHILLAQ+AQK A KVY+ +SGKID C++I  +  ++ V++ 
Sbjct: 1518 LVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVI--DCNKDQVIYY 1575

Query: 757  EKQTKKQSQ---DNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAA 587
             +  KK+     +      AL+ AG+DF  FW+MQD+LDV  +Y+NN+ AMLNT+GVEAA
Sbjct: 1576 GRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAA 1635

Query: 586  RASIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFET 407
            RA+II+EV  VF  YGV+++ RHLSLIAD+MTH+GGY+PM+RHG I+ES+SPF KM+FET
Sbjct: 1636 RATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFET 1695

Query: 406  ASKFIVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            ASKFIVEAASHG+TD LE+ S+RICLGLPVKMGTGCFD+MQK++I
Sbjct: 1696 ASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1740


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1889 bits (4892), Expect = 0.0
 Identities = 984/1652 (59%), Positives = 1197/1652 (72%), Gaps = 33/1652 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP GLYDPA+G +D+++PC+SCG+RSF+C GHCGHI+LVS VYNPLLFN+LHNLLQ+TC
Sbjct: 45   PVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSC--TID 4775
            F+C HF+ S + V+K VS+LELI+KGDV+GAK +  +SP  S+  E S+GSH+SC  T++
Sbjct: 105  FFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVN 164

Query: 4774 DLNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHM- 4598
                 + S + K+  W + Q  EAM+V++  LK K   C NCKAK+P+++KP+FG FHM 
Sbjct: 165  SSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMA 224

Query: 4597 DISSKRIRENYLNNGQRFNLHYTGGSEENP--SAEVVNATEPLGEADGLENS--KAHGRQ 4430
             +S  + R N +           G   E P    +       +   DG++++  K   R+
Sbjct: 225  GLSDAQTRANVIR----------GSKLERPLNGVDTDETHSSIAPTDGIQDTVTKRLERK 274

Query: 4429 GGDQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPS 4250
            G        +Q+  FS   LPS+VR+I+E LWENEA LC+F  DI  +     G  AG S
Sbjct: 275  GAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYS 334

Query: 4249 MFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRL 4070
            MFFL+++LVPPIKFRPP+KG  SVMEHP TVLLGKV+ +NIALGNAH N + RSKIISR 
Sbjct: 335  MFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRW 394

Query: 4069 MDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDP 3890
            MDLQQS+NVLFD KTAAG GQ+D GSGICQLLEKKEG+FRQKMMGKRVNFACRSVISPDP
Sbjct: 395  MDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDP 454

Query: 3889 YLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSS 3710
            YLAVNEIGIPPYFALRLTYPE+VTPWN VK+R+AIINGPE HPGA  + D++STVKL  +
Sbjct: 455  YLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVN 514

Query: 3709 KKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAH 3530
            KKMR +ISRKLPSSRG V Q GR+ + EFEGK+V RHLQDGDIVLVNRQPTLHKPSIMAH
Sbjct: 515  KKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAH 574

Query: 3529 VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKG 3350
            VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QYIVP++G
Sbjct: 575  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRG 634

Query: 3349 DTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSE 3170
            D +RGLIQDHIV AVLLT K+TFLT  ++NQLLY SG+ ++G G   G   KKVSV+DSE
Sbjct: 635  DPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSE 693

Query: 3169 GVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQ 2990
              +Q +LPA+WKP+PLW+GKQVITA+LNH+T G  P T +  GKIP  YF   S + E +
Sbjct: 694  DEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYF--GSEIDEKK 751

Query: 2989 S----------REEE--EDRTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANK 2846
            S          R+E+  E +  E K LI KNELVRGVIDKAQF K+GLVH +QELYG+N 
Sbjct: 752  SGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNT 811

Query: 2845 AGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRK-XXXXXXXXXXEAHCDFVKFK 2669
            AGILLS LSRLFT+FLQ+HGFTCG+DDL+I P+YDI RK             HC F+   
Sbjct: 812  AGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSN 871

Query: 2668 RGEIGPLELQLEIERAISSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNC 2489
             G+I P++LQ+E+E+ I SN EAA   LD  MKN+L    S+ NK+LLLKGL+KPFP+NC
Sbjct: 872  HGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNC 931

Query: 2488 IALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSD 2309
            ++LMT TGAKGSTVNF QISS+LGQQ+LEGKRVPRMVSGKTLP FPPWDCA+RAGG++SD
Sbjct: 932  LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 991

Query: 2308 RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGS 2129
            RFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DGS
Sbjct: 992  RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1051

Query: 2128 IIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGQKLNSYIEKLPDGLEEKVKHF 1949
            I+QF YG+DGVDVH+TSF+  F+AL  N+E +C+K     K N YI+KLP  L +K K F
Sbjct: 1052 IVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKF 1111

Query: 1948 WXXXXXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVG 1769
                                      +++ DF+ LV QKY SSLA  GEPVGVLA QSVG
Sbjct: 1112 IEGFMEERQDFDN------------MKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVG 1159

Query: 1768 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSL 1589
            EPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++DIKTPIMTCP    + K DA+ L
Sbjct: 1160 EPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERL 1219

Query: 1588 LAKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKK------HDFVSSEDCEYT 1427
             AK+KK+TVAD+ ESMEV+++P ++ +HQ C +YKL +KL +      H  +S EDCE T
Sbjct: 1220 AAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEET 1279

Query: 1426 LKYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENAS-SARHXXXXXXXXX 1250
            L+ VF+RELEDAI++HL LLSKI+GI+NF     S  S ET+E+AS              
Sbjct: 1280 LEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDD 1339

Query: 1249 XXXXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQ-EIGNRD 1073
                    DLG DAQKRKQQ                             V+ + EI N +
Sbjct: 1340 GEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNE 1399

Query: 1072 EEEIGDHGNEED--ISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHF 899
            E  I D  +E+    S                                   +G +FEVHF
Sbjct: 1400 EVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHF 1459

Query: 898  RFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTKKQSQ---D 728
            RF NEPHILLAQ+AQK A KVY+ +SGKID C++I  +  ++ V++  +  KK+     +
Sbjct: 1460 RFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVI--DCNKDQVIYYGRDPKKRENIPGE 1517

Query: 727  NDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFG 548
                  AL+ AG+DF  FW+MQD+LDV  +Y+NN+ AMLNT+GVEAARA+II+EV  VF 
Sbjct: 1518 EKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFN 1577

Query: 547  IYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGL 368
             YGV+++ RHLSLIAD+MTH+GGY+PM+RHG I+ES+SPF KM+FETASKFIVEAASHG+
Sbjct: 1578 AYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGM 1637

Query: 367  TDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            TD LE+ S+RICLGLPVKMGTGCFD+MQK++I
Sbjct: 1638 TDNLESASARICLGLPVKMGTGCFDLMQKIEI 1669


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1713 bits (4436), Expect = 0.0
 Identities = 939/1676 (56%), Positives = 1140/1676 (68%), Gaps = 57/1676 (3%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            P+P GLYD  +GPL+D +PCKSCG    HC GHCGHI+LVSP+YNPLLFN LH LLQR C
Sbjct: 45   PMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRIC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F+C+HFRA + EVE+CVS+L+LI  GD++GAK +   S D S+  + +EGS  S +I   
Sbjct: 105  FFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI--- 161

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD-I 4592
                +SE  K   W + Q  EAM+V+N  LK K  KC NC AKNP I+KP FG  HM+ +
Sbjct: 162  --VHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGM 219

Query: 4591 SSKRIRENYLNNGQR---FNLHYTGGSEENPSAEVVNATEPLGEAD----GLENSKAHGR 4433
               ++REN +   +    F+     G E+            + E D    G   S+ +G 
Sbjct: 220  LGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGA 279

Query: 4432 QGGDQSDVIE----QQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGK 4265
            +   +   +     +Q++ FS   LPS+V+ I + LWENE  LC+   DIQ Q     GK
Sbjct: 280  KARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GK 336

Query: 4264 VAGPSMFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSK 4085
              G SMFFL+++LVPPIKFR P KGGDSVMEHP TVLL KV+ +NI+LGNA+ N    SK
Sbjct: 337  KVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSK 396

Query: 4084 IISRL-MDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRS 3908
             + RL MDLQQSVN+LFDSKTA   G +DV SGICQLLEKKEG+FRQKMMGKRVNFACRS
Sbjct: 397  AVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRS 455

Query: 3907 VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRIST 3728
            VISPDPYLAVNEIGIPPYFALRLTYPERVTPWN VK+REAIING E HPGA  + D++ST
Sbjct: 456  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLST 515

Query: 3727 VKLPSSKKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHK 3548
             +LP S+K R +ISRKLPSSRGA+ Q G+N +YEFEGK+V RHLQDGD+VLVNRQPTLHK
Sbjct: 516  KRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHK 575

Query: 3547 PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQY 3368
            PSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY
Sbjct: 576  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQY 635

Query: 3367 IVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKV 3188
            + P+ G+ +R LIQDHIV AVLLT ++TFL+  EFNQLLY SGV +      SG   +KV
Sbjct: 636  VRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKV 695

Query: 3187 SVVDSEGVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQS 3008
             V  SE  +  I+PA+ KPKPLWTGKQVI+++L+H+T G  P TV    KIP  +F ++ 
Sbjct: 696  FVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRR 755

Query: 3007 RLVEYQSREEEEDRT----------------AENKFLIWKNELVRGVIDKAQFGKFGLVH 2876
               +  SREE + +                  E K LI++N+LVRGVIDKAQF  +GLVH
Sbjct: 756  NKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVH 815

Query: 2875 TIQELYGANKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDI-RRKXXXXXXXXXX 2699
            T+QELYG+N AGILLS  SRLFT+FLQ+HGFTCG+DDL+I+   DI R+K          
Sbjct: 816  TVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVT 875

Query: 2698 EAHCDFVKFKRGEIGPLELQLEIERAISSNKEAATAALDMKMKNKL-ANKGSQFNKELLL 2522
            EAH +    K       ELQLEIER I  + E A  ALD KM + L  N       ELL 
Sbjct: 876  EAHYELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLS 933

Query: 2521 KGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWD 2342
            +GL+K    NCI+LMT +GAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLP F PWD
Sbjct: 934  EGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWD 993

Query: 2341 CASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVC 2162
             A+RAGG++SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ 
Sbjct: 994  WAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1053

Query: 2161 YDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKL--RHGQKLNSYIE 1988
            YD+TVRDADGSI+QF YGEDG+DVH+TSF+  F+AL  NQ+ + +KL  + G+  +S  +
Sbjct: 1054 YDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDS-DK 1112

Query: 1987 KLPDGLEEKVKHFWXXXXXXXXXXXXXXXXXXEIVKQLKEEEV---DFLELVGQKYFSSL 1817
             LPDGL  K + F                   E +K+ + +++   DFL L+  K+ SSL
Sbjct: 1113 ILPDGLRSKAEQF-----------------IREEIKKYQHQKIKPKDFLNLLKLKFLSSL 1155

Query: 1816 ADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIM 1637
            A  GEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS DI+TP+M
Sbjct: 1156 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVM 1215

Query: 1636 TCPFLGWKPKGDAQSLLAKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKKHD 1457
            TCP    K K DA  L  K+KKITVAD++ESMEV++ P ++ N  +C +YKL + L K D
Sbjct: 1216 TCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPD 1275

Query: 1456 ------FVSSEDCEYTLKYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEEN 1295
                   ++ +DCE+ LK VFLRELEDAI++HL LLSKI+GI+ F    +   SNE +E+
Sbjct: 1276 KYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDED 1335

Query: 1294 ASSAR----HXXXXXXXXXXXXXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXX 1127
             S  R                      DLG DAQK+KQQ                     
Sbjct: 1336 VSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASL 1395

Query: 1126 XXXXXEKSVQGQEIGNRDEEEIG-DHG---------NEEDISNXXXXXXXXXXXXXXXXX 977
                 E  +   E G      IG D+G         N E+ SN                 
Sbjct: 1396 AALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKRKKM 1455

Query: 976  XXXXXXXXXXXXXXXXVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRM 797
                            + GL FEVHF+  NEPHILLAQ+A+KTAKKVY+++ GKIDQCR+
Sbjct: 1456 KAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRV 1515

Query: 796  IKYEVTENTVM-WDEKQTKKQSQDNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIR 620
               + +EN V  + E   K++S  +     AL   G+DFG FW+M+D +DV  +Y+N+I 
Sbjct: 1516 T--DCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIH 1573

Query: 619  AMLNTYGVEAARASIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISES 440
            AMLNTYGVEAAR +IIRE+  VF  YG+ ++ RHL+LIAD+MTH+G Y+PMSR G I+ES
Sbjct: 1574 AMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAES 1633

Query: 439  LSPFLKMSFETASKFIVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            +SPF KMSFETASKFIVEAA HGL D LETPSSRICLGLPVKMGTG FD+MQK++I
Sbjct: 1634 ISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1689


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1687 bits (4370), Expect = 0.0
 Identities = 908/1653 (54%), Positives = 1132/1653 (68%), Gaps = 34/1653 (2%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP GLYD A+GP DD S CKSCG+ S HC GH GHIELVSPVYNPL+FN+L N+LQRTC
Sbjct: 45   PVPDGLYDAALGPFDDKSLCKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQ-EQSEGSHMSCTIDD 4772
            F C HFRA   EV+   S+LELI KGD+I AK +  + P  S D     E  H     D 
Sbjct: 105  FTCHHFRAPSKEVDIRTSQLELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPG---DG 161

Query: 4771 LNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMDI 4592
               Q +S      +W + QF+EAM+V+ ++L  K +KC  C AKNPKISKP+FG FHM++
Sbjct: 162  DESQCYSAEQLGENWTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNV 221

Query: 4591 -SSKRIRENYLNNGQRFNLH---YTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGG 4424
             S+   R + + + +    +     GG +     ++ +A            +K   R+  
Sbjct: 222  LSADETRADTIRSVESETTNDDISLGGGDTTDVEDITSAG----------TAKRDKRKKE 271

Query: 4423 DQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMF 4244
              S  + +Q +  S + LPSQV+ I+E LWENEA LC++  DIQ Q     GK AG SMF
Sbjct: 272  KLSYKLAEQ-NKLSGSLLPSQVKGILELLWENEARLCSYINDIQDQGF---GKKAGHSMF 327

Query: 4243 FLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMD 4064
            FL+++ VPPIKFRPP KGGD+VMEHP TVLL KV+  NI+LG+AH+N++  SK++SR MD
Sbjct: 328  FLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMD 387

Query: 4063 LQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 3884
            LQQSVN+LFD+KTA+G  ++DV +GICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYL
Sbjct: 388  LQQSVNMLFDNKTASG--KRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 445

Query: 3883 AVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKK 3704
            AVNEIGIPPYFALRL+YPERVTPWN VK+R AI+NGPE+HPGA  +AD++S VKLP   K
Sbjct: 446  AVNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGK 505

Query: 3703 MRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVV 3524
            + +  SRKLP+SRG +   G+  ++EFEGKVV RHL+DGD+VLVNRQPTLHKPSIMAH+V
Sbjct: 506  LLSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIV 565

Query: 3523 RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3344
            RVLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT GD 
Sbjct: 566  RVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDP 625

Query: 3343 VRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGV 3164
            +R LIQDHIV A LLT K+TFL+  EFNQLLY SGV  AG G   G H +KV + +SE  
Sbjct: 626  IRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESE 685

Query: 3163 VQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSR 2984
            +    PA+WKP+PLWTGKQVI+ALL ++T G  P T +   KIP  +F +Q R  +  + 
Sbjct: 686  MFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTE 745

Query: 2983 E--EEEDRTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSRLF 2810
            +  +++D+  E+K LI+KN+LVRGV+DKAQFG +G++HT+QELYG+N AG LLSALSRLF
Sbjct: 746  DTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLF 805

Query: 2809 TIFLQLHGFTCGIDDLVILPHYDIRR-KXXXXXXXXXXEAHCDFVKFKRGE-IGPLELQL 2636
            T FLQ+HGFTCG+DDL++    D+ R              H +F+  K  + I P+ LQL
Sbjct: 806  TTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQL 865

Query: 2635 EIERAISSNKEAATAALDMKMKNKLANK-GSQFNKELLLKGLLKPFPRNCIALMTITGAK 2459
             IE+ I SN EAA   LD KM + L ++  S   K+LL +G+LKP  +NCI+LMT +GAK
Sbjct: 866  NIEKKIRSNGEAA-LTLDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAK 924

Query: 2458 GSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQE 2279
            GS VNFQQISS+LGQQELEGKRVPRMVSGKTLP FPPWDC+ RAGG++ DRFL+ L PQE
Sbjct: 925  GSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQE 984

Query: 2278 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 2099
            YYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGEDG
Sbjct: 985  YYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDG 1044

Query: 2098 VDVHRTSFLKNFKALKNNQETICQK-LRHGQKLNSYIEKLPDGLEEKVKHFWXXXXXXXX 1922
            VDVH+TSF+  F AL  N+E +     R   + + YI KLP+ LE K + F         
Sbjct: 1045 VDVHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKFSKQRNLG-- 1102

Query: 1921 XXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLN 1742
                              E+ DFL L+  KY S LA  GEPVGVLA QSVGEP+TQMTLN
Sbjct: 1103 ----------------SMEQADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLN 1146

Query: 1741 TFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITV 1562
            TFHLAGRGEMNVTLGIPRLQEILM A+ DIKTP MTCP    K   DA  L  K+KKITV
Sbjct: 1147 TFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDAICLADKLKKITV 1206

Query: 1561 ADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKK------HDFVSSEDCEYTLKYVFLREL 1400
            AD+I+SM+V+++P+++   QVC +YKL +KL K      +  ++ +D E TL+  F+REL
Sbjct: 1207 ADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVREL 1266

Query: 1399 EDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSA--------RHXXXXXXXXXXX 1244
            EDAI++H++LLSKI+GI+ FK+  +S  SN +E+  S+          +           
Sbjct: 1267 EDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVE 1326

Query: 1243 XXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEIG-----N 1079
                  DLGSDAQKRK Q                           + ++G E G     N
Sbjct: 1327 DTEGYEDLGSDAQKRKLQ------GTDEVDYEDGPEEETHDGELSEEIEGDEDGSDVDAN 1380

Query: 1078 RDEEEIGDHGNEEDISN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVH 902
             +   + D  N E +                                     +G HFE+H
Sbjct: 1381 ENYNNVTDANNSEGLEKPSKSKTIDEKQNLKREKKKSEPTTKKYDRAIFVEAKGKHFEIH 1440

Query: 901  FRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTKKQ---SQ 731
            FRF  EPHILL Q+AQ+TAKKV ++N GK+ +C+ I  +  E+ V++  K  +K+   S 
Sbjct: 1441 FRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITCK--ESGVIYYGKDGRKRIEISA 1498

Query: 730  DNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVF 551
                   AL+ +G+ F TFWE++DDLDV  IY+NN+ AMLN YGVEAAR +IIREV+ VF
Sbjct: 1499 SEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVF 1558

Query: 550  GIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHG 371
              YG+ ++ RHL+LIAD+MTHTG Y+PM+R GSI++S SPF+KM FETA  FIVEAA HG
Sbjct: 1559 KSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAAYHG 1618

Query: 370  LTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
              D LETPS+RICLGLPVKMGTGC D++QKL+I
Sbjct: 1619 QVDNLETPSARICLGLPVKMGTGCHDLIQKLEI 1651


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1667 bits (4316), Expect = 0.0
 Identities = 910/1653 (55%), Positives = 1117/1653 (67%), Gaps = 34/1653 (2%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PV  GLYDPAMG LD+ + CKSCG+R F+C GHCGHI+LVSPVYNPLLF +LHN L+ TC
Sbjct: 51   PVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTC 110

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F C HFRA  + VE C + LELI  G++  AK +     ++   + +++ SH   T +  
Sbjct: 111  FSCHHFRAGESMVENCKTLLELILDGEIAKAKEL---EEEWMNSKSRTKSSHSMYTYERK 167

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD-I 4592
            N Q  +       W + QF+EA++V+ + LK K   C  C AK+PKI+KP+FG FHM  +
Sbjct: 168  NGQPET-------WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGL 220

Query: 4591 SSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGGDQSD 4412
            +  + R N +   +  ++  + G+E   S E    TE   E               D S 
Sbjct: 221  AGVQKRANAIRRSKPVSV--SSGAEGVSSLEEETTTEATVE------------DFEDVSP 266

Query: 4411 VIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLDS 4232
             +  Q++  S   LPS+V++I++ LW+NEA LC+F  DI  Q     G  AG SMFFL+S
Sbjct: 267  EVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGH---GNKAGHSMFFLES 323

Query: 4231 VLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQQS 4052
            VLVPPIKFRPPAKGGDSVMEHP TVLL KV+ SNI+LGN H N++  SKI+   MDLQQS
Sbjct: 324  VLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQS 383

Query: 4051 VNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNE 3872
            +N+LFDSK+AAGPG+ D   GICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNE
Sbjct: 384  INILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNE 443

Query: 3871 IGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVK--LPSSKKMR 3698
            IGIPPYFALRLTYPERVT WN  K+R AIINGPE HPGA  + D+++TVK  L  S+K R
Sbjct: 444  IGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSR 503

Query: 3697 TAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3518
             +ISRKLPSSRG V   G  D+YEFEGK+VNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV
Sbjct: 504  ISISRKLPSSRGVVVDQG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 562

Query: 3517 LKGEKTLRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTV 3341
            LKGEKT+RMHYANCS TYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY+ PT G+ +
Sbjct: 563  LKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPI 622

Query: 3340 RGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVV 3161
            R LIQDHI+ AVLLT K+TFL   EF+QLLY SG+  +    +S    +K+  +D +  +
Sbjct: 623  RALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEM 682

Query: 3160 QTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSRE 2981
              +LPAVWKP+PLWTGKQV+TALL+H+T G  P  V+   KIP  + +    L E  S++
Sbjct: 683  LPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLI----LDEGNSKK 738

Query: 2980 EEED--------RTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSA 2825
            +E          R  ++  LI+KNELVRGVIDKAQFG +GLVHT+QELYG+N AG+LLS 
Sbjct: 739  KEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSV 798

Query: 2824 LSRLFTIFLQLHGFTCGIDDLVILPHYD-IRRKXXXXXXXXXXEAHCDFVKFKRGE-IGP 2651
            +SRLFT+FLQ HGFTCG+DDL+++   D  R K          + H  F+K K GE + P
Sbjct: 799  MSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDP 858

Query: 2650 LELQLEIERAISSNKEAATAALDMKMKNKLANK--GSQFNKELLLKGLLKPFPRNCIALM 2477
            + LQL IE+ IS N EAA  +LD KM ++L  +   S+  K+LL +GLLKP  +NCI+LM
Sbjct: 859  MTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLM 918

Query: 2476 TITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLS 2297
            T +GAKG T NFQQISS+LGQQ+LEGKRVPRMVSGKTLP FPPWD ASRAGG++ DRFL+
Sbjct: 919  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 978

Query: 2296 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQF 2117
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+IQF
Sbjct: 979  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQF 1038

Query: 2116 YYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHG-QKLNSYIEKLPDGLEEKVKHFWXX 1940
             YGEDGVDVH+T+F+  F+AL  NQ+ + +   H   K N +I +LP  L EK +  +  
Sbjct: 1039 QYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNS 1098

Query: 1939 XXXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPS 1760
                                 LKE   DF+ L+  KY SSLA  GEPVGVLA QS+GEPS
Sbjct: 1099 LSKDKVPGLV-----------LKE---DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPS 1144

Query: 1759 TQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAK 1580
            TQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS DIKTPIMTCP         A+ L  K
Sbjct: 1145 TQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANK 1204

Query: 1579 VKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTLKY 1418
            +KKITVAD+IESM V ++P S    ++C +YKL +         +H  +S ED E TL+ 
Sbjct: 1205 LKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLET 1264

Query: 1417 VFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSARHXXXXXXXXXXXXX 1238
            VFL ELE  IE  + LLSKINGI+ F    +S+ S+E +E +SS +              
Sbjct: 1265 VFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSSRQE--EMDDDDEGNDL 1322

Query: 1237 XXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQ--EIGNRDEEE 1064
                DLGSD +K+K Q                          E   QG   EI N D  E
Sbjct: 1323 DVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVD-QGDEAEITNNDMIE 1381

Query: 1063 IGDHGNEE------DISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVH 902
            I      E      D+S                                   +  HFEVH
Sbjct: 1382 IVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVH 1441

Query: 901  FRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMW---DEKQTKKQSQ 731
            F+F NEPH LL+Q+ Q+ A+KV ++ SGKI QC+ I  +  E  V++   + K+ K    
Sbjct: 1442 FKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCK--EGQVIYHGNNLKERKNLKP 1499

Query: 730  DNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVF 551
            +      AL+ +G+DF T WEMQD+LDV  IY+N+I AML TYGVEAARA+IIRE++ +F
Sbjct: 1500 EEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIF 1559

Query: 550  GIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHG 371
              YG+ ++ RHLSL+ADYMTH+GGY+PMSR G IS+S+SPF +M+FETA KFIV+AA HG
Sbjct: 1560 TSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHG 1619

Query: 370  LTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
              D LETPSSRICLGLPVKMGTG FD+MQK+++
Sbjct: 1620 EVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1652


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1666 bits (4314), Expect = 0.0
 Identities = 908/1652 (54%), Positives = 1114/1652 (67%), Gaps = 33/1652 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PV  GLYDPAMG LD+ + CKSCG+R F+C GHCGHI+LVSPVYNPLLF +LHN L+ TC
Sbjct: 45   PVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F C HFRA  + VE C + LELI  G++  AK +     ++   + +++ SH   T +  
Sbjct: 105  FSCHHFRAGESMVENCKTLLELILDGEIAKAKEL---EEEWMNSKSRTKSSHSMYTYERK 161

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD-I 4592
            N Q  +       W + QF+EA++V+ + LK K   C  C AK+PKI+KP+FG FHM  +
Sbjct: 162  NGQPET-------WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGL 214

Query: 4591 SSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGGDQSD 4412
            +  + R N +   +  ++  + G+E   S E    TE   E               D S 
Sbjct: 215  AGVQKRANAIRRSKPVSV--SSGAEGVSSLEEETTTEATVE------------DFEDVSP 260

Query: 4411 VIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLDS 4232
             +  Q++  S   LPS+V++I++ LW+NEA LC+F  DI  Q     G  AG SMFFL+S
Sbjct: 261  EVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGH---GNKAGHSMFFLES 317

Query: 4231 VLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQQS 4052
            VLVPPIKFRPPAKGGDSVMEHP TVLL KV+ SNI+LGN H N++  SKI+   MDLQQS
Sbjct: 318  VLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQS 377

Query: 4051 VNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNE 3872
            +N+LFDSK+AAGPG+ D   GICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNE
Sbjct: 378  INILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNE 437

Query: 3871 IGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVK--LPSSKKMR 3698
            IGIPPYFALRLTYPERVT WN  K+R AIINGPE HPGA  + D+++TVK  L  S+K R
Sbjct: 438  IGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSR 497

Query: 3697 TAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3518
             +ISRKLPSSRG V   G  D+YEFEGK+VNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV
Sbjct: 498  ISISRKLPSSRGVVVDQG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 556

Query: 3517 LKGEKTLRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTV 3341
            LKGEKT+RMHYANCS TYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY+ PT G+ +
Sbjct: 557  LKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPI 616

Query: 3340 RGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVV 3161
            R LIQDHI+ AVLLT K+TFL   EF+QLLY SG+  +    +S    +K+  +D +  +
Sbjct: 617  RALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEM 676

Query: 3160 QTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSRE 2981
              +LPAVWKP+PLWTGKQV+TALL+H+T G  P  V+   KIP  +F  +        ++
Sbjct: 677  LPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKKK 736

Query: 2980 E-------EEDRTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSAL 2822
            E       +  R  ++  LI+KNELVRGVIDKAQFG +GLVHT+QELYG+N AG+LLS +
Sbjct: 737  EHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVM 796

Query: 2821 SRLFTIFLQLHGFTCGIDDLVILPHYD-IRRKXXXXXXXXXXEAHCDFVKFKRGE-IGPL 2648
            SRLFT+FLQ HGFTCG+DDL+++   D  R K          + H  F+K K GE + P+
Sbjct: 797  SRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPM 856

Query: 2647 ELQLEIERAISSNKEAATAALDMKMKNKLANK--GSQFNKELLLKGLLKPFPRNCIALMT 2474
             LQL IE+ IS N EAA  +LD KM ++L  +   S+  K+LL +GLLKP  +NCI+LMT
Sbjct: 857  TLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMT 916

Query: 2473 ITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSG 2294
             +GAKG T NFQQISS+LGQQ+LEGKRVPRMVSGKTLP FPPWD ASRAGG++ DRFL+G
Sbjct: 917  TSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTG 976

Query: 2293 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFY 2114
            LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+IQF 
Sbjct: 977  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQ 1036

Query: 2113 YGEDGVDVHRTSFLKNFKALKNNQETICQKLRHG-QKLNSYIEKLPDGLEEKVKHFWXXX 1937
            YGEDGVDVH+T+F+  F+AL  NQ+ + +   H   K N +I +LP  L EK +  +   
Sbjct: 1037 YGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSL 1096

Query: 1936 XXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPST 1757
                                LKE   DF+ L+  KY SSLA  GEPVGVLA QS+GEPST
Sbjct: 1097 SKDKVPGLV-----------LKE---DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPST 1142

Query: 1756 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKV 1577
            QMTLNTFH  GRGEMNVTLGI RLQEILMTAS DIKTPIMTCP         A+ L  K+
Sbjct: 1143 QMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKL 1202

Query: 1576 KKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTLKYV 1415
            KKITVAD+IESM V ++P S    ++C +YKL +         +H  +S ED E TL+ V
Sbjct: 1203 KKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETV 1262

Query: 1414 FLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSARHXXXXXXXXXXXXXX 1235
            FL ELE  IE  + LLSKINGI+NF    +S+ S+E +E  SS+R               
Sbjct: 1263 FLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDE-VSSSRQKENDDDDDEGNDLD 1321

Query: 1234 XXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQ--EIGNRDEEEI 1061
               DLGSD +K+K Q                          E   QG   EI N D  EI
Sbjct: 1322 VAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVD-QGDEAEITNNDMIEI 1380

Query: 1060 GDHGNEE------DISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHF 899
                  E      D+S                                   +  HFEVHF
Sbjct: 1381 VKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHF 1440

Query: 898  RFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMW---DEKQTKKQSQD 728
            +F NEPH LL+Q+ Q+ A+KV ++ SGKI QC+ I  +  E  V++   + K+ K    +
Sbjct: 1441 KFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCK--EGQVIYHGNNLKERKNLKPE 1498

Query: 727  NDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFG 548
                  AL+ +G+DF T WEMQD+LDV  IY+N+I AML TYGVEAARA+IIRE++ +F 
Sbjct: 1499 EKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFT 1558

Query: 547  IYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGL 368
             YG+ ++ RHLSL+ADYMTH+GGY+PMSR G IS+S+SPF +M+FETA KFIV+AA HG 
Sbjct: 1559 SYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGE 1618

Query: 367  TDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
             D LETPSSRICLGLPVKMGTG FD+MQK+++
Sbjct: 1619 VDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1650


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1592 bits (4121), Expect = 0.0
 Identities = 878/1646 (53%), Positives = 1103/1646 (67%), Gaps = 27/1646 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP GLYDP MGPL+D   CKSCG+    C GHCGHIELV P+Y+PLLF++L+N LQRTC
Sbjct: 47   PVPGGLYDPVMGPLNDKEACKSCGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTC 106

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F+C HF A   +V+KCVS+L+LI KGD++ AK + V S   ST+ E  E S  S   +D 
Sbjct: 107  FFCHHFMAKPNDVKKCVSQLKLIMKGDIVSAKQLEVKSDSTSTNSEDIEVSCESGVTNDS 166

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD-I 4592
            + +      +   W + QF E  AV+   +K  +++C+ CKAKNPK+ KP FG   M  +
Sbjct: 167  SQECEDPDMEDQRWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGM 226

Query: 4591 SSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGGDQSD 4412
            ++  +  N +       +  +  S ENP    ++A   L EA+  ++ K    +  + + 
Sbjct: 227  NASAVGANLIRG---LKVKKSTSSVENPDDSGIDA---LSEAE--DSDKEKREKSTEIAK 278

Query: 4411 VIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLDS 4232
              E+Q+D+     LPS+VR I+++LWENE   C+F  D+      +  +    SMFFL+S
Sbjct: 279  EFEKQKDTKRDL-LPSEVRAILKNLWENEHEYCSFIGDLWQ----SGSEKIDYSMFFLES 333

Query: 4231 VLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQQS 4052
            VLVPPIKFRPP KGGDSVMEHP TV L KV+ SNI LGNA  N+  +SK+ISR M+LQ+S
Sbjct: 334  VLVPPIKFRPPTKGGDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSKVISRWMNLQES 393

Query: 4051 VNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNE 3872
            VNVLFDSK A+   QKD GSGICQLLEKKEG+FRQKMMGKRVN ACRSVISPDPY+AVNE
Sbjct: 394  VNVLFDSKAASVQSQKD-GSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNE 452

Query: 3871 IGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMRTA 3692
            IGIPP FAL+L YPERVTPWN  K+REAIINGP+ HPGA  ++D++STVKLPSS K RTA
Sbjct: 453  IGIPPCFALKLIYPERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVKERTA 512

Query: 3691 ISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 3512
            I+ KL SSRGA T+ G+  +  FEGKVV R ++DGD+VLVNRQPTLHKPS+MAH+VRVLK
Sbjct: 513  IANKLLSSRGATTELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVRVLK 572

Query: 3511 GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGL 3332
            GEKTLR+HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY  P+ GD +R L
Sbjct: 573  GEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRAL 632

Query: 3331 IQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQTI 3152
            IQDHIV +VLLT ++TFL    FNQLL+ SGV        SG   KKV++  S+  + T+
Sbjct: 633  IQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAELLTV 692

Query: 3151 LPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQ----SR 2984
            +PA+ KP PLWTGKQVIT +LN +T G  P TV+   K+P  +F  +SR V+      ++
Sbjct: 693  MPAILKPVPLWTGKQVITTVLNLITKGHPPFTVEKATKLPVDFFKCRSREVKPNTGDLTK 752

Query: 2983 EEEEDRT-----AENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALS 2819
            +++ D +      E+K LI KNE V GVIDKAQF  FG+VHT+ ELYG+N AG LLS  S
Sbjct: 753  KKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLLSVFS 812

Query: 2818 RLFTIFLQLHGFTCGIDDLVILPHYDIRR--KXXXXXXXXXXEAHCDFVKFKRGEIGPLE 2645
            RLFT FLQ+HGFTCG+DDL+IL   D  R  +               F      +I P +
Sbjct: 813  RLFTAFLQIHGFTCGVDDLIILKDMDEERTKQLQECEKVGERVLRKTFGIDVDRQIDPQD 872

Query: 2644 LQLEIERAISSNKEAATAALDMKMKNKLANKGSQ-FNKELLLKGLLKPFPRNCIALMTIT 2468
            ++  IER +  + E+A A+LD  + N L    S+    +LL  GLLK   +NCI+LMTI+
Sbjct: 873  MRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGKNCISLMTIS 932

Query: 2467 GAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLR 2288
            GAKGS VNFQQISS+LGQQ+LEGKRVPRMVSGKTLP F PWD + RAGG++SDRFLSGLR
Sbjct: 933  GAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLR 992

Query: 2287 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYG 2108
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDADGSIIQF YG
Sbjct: 993  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYG 1052

Query: 2107 EDGVDVHRTSFLKNFKALKNNQETICQKLRHG--QKLNSYIEKLPDGLEEKVKHFWXXXX 1934
            EDGVDVHR+SF+  FK L  NQ+ + Q+         +SYI  LP  L++  + F     
Sbjct: 1053 EDGVDVHRSSFIGKFKELTVNQDMVLQRCSEDMLSGSSSYISDLPISLKKDAEKF----- 1107

Query: 1933 XXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQ 1754
                             K +++EE+  L+LV  KYF SLA  GEPVGVLA QSVGEPSTQ
Sbjct: 1108 -----VEAMPMNERIASKFVRQEEL--LKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQ 1160

Query: 1753 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVK 1574
            MTLNTFHLAGRGEMNVTLGIPRLQEILMTA+ DIKTPIMTCP L  K K DA  +  K++
Sbjct: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITDKLR 1220

Query: 1573 KITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKKHDF------VSSEDCEYTLKYVF 1412
            KITVAD+I+ ME++++P +IH + +C ++KL + L K +       ++ ED E T+K VF
Sbjct: 1221 KITVADIIKDMELSVVPYTIHKNDICSIHKLKINLYKPEHYPKNTDITEEDWEETMKVVF 1280

Query: 1411 LRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETE-ENASSARHXXXXXXXXXXXXXX 1235
            LR+LEDAIE H+ +L ++ GI+NF         NET+ +N+ S +               
Sbjct: 1281 LRKLEDAIEIHMKMLHRMRGIRNFVQDTSPTAGNETDNDNSISGKQ----TEDDDDGEGT 1336

Query: 1234 XXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEIGNRDEE-EIG 1058
               DLGSDAQKRK+Q                             V+  EI N +E+ E+ 
Sbjct: 1337 EVDDLGSDAQKRKKQ------ATDEMDYEENSEDETNEPSSISGVEDPEIDNENEDVEVS 1390

Query: 1057 DHGNEEDISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHFRF-VNEP 881
              G  E                                      EG  FEVHF+F  +EP
Sbjct: 1391 KEGTPE---QQKEVKKVKNVKQQSKKKRRKYVGADEDRHIFVKGEGEKFEVHFKFPTSEP 1447

Query: 880  HILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMW---DEKQTKKQSQDNDSAYW 710
            HILLAQ+AQKTA+KVY++NSGKI++C +      +  V++   D K+ ++ S D   A  
Sbjct: 1448 HILLAQIAQKTAQKVYIQNSGKIERCTVA--NCGDPQVIYHGDDPKERREISNDEKKASP 1505

Query: 709  ALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFGIYGVEI 530
            AL A+G+DF   WE QD LDV  +Y+N+I  MLN +GVEAAR +IIRE+  VF  YG+ +
Sbjct: 1506 ALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISV 1565

Query: 529  DFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLTDYLET 350
              RHL+LIADYMT +GGY+PMSR G I+ES SPF +M+FETA+KFIV+AA++G  D LET
Sbjct: 1566 SIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLET 1625

Query: 349  PSSRICLGLPVKMGTGCFDIMQKLDI 272
            PS+RICLGLP   GTGCFD+MQ++++
Sbjct: 1626 PSARICLGLPALSGTGCFDLMQRVEL 1651


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1586 bits (4107), Expect = 0.0
 Identities = 866/1639 (52%), Positives = 1105/1639 (67%), Gaps = 20/1639 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPL-DDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRT 4952
            PV  GLYDPA GPL D+ S C+SCG    HCSGH GHIELVSPVYNPL+F  L  +L RT
Sbjct: 45   PVRGGLYDPAFGPLLDNRSNCESCGMSKDHCSGHFGHIELVSPVYNPLMFLFLGKILNRT 104

Query: 4951 CFYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDD 4772
            CF C +FRASR EV++  S+LELI KG++  AK +G +  + + D         S   DD
Sbjct: 105  CFSCHYFRASRDEVKRRASQLELILKGNISKAKSLGEIKLNETID---------SVDDDD 155

Query: 4771 LNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD- 4595
             + Q         SW + QF+EAM+VI   L    +KC NC   +PKI+KP+FGRF++  
Sbjct: 156  DDSQWSGAEQLGESWTSLQFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVKA 215

Query: 4594 ISSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGGDQS 4415
            +SS + R N +++ +                    A +   + + + +  A    G +Q 
Sbjct: 216  LSSVQARANVISSAK--------------------AADVQADEEDITSGGAGNSNGNNQI 255

Query: 4414 DVIEQ-QRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFL 4238
              I+  ++ S S + LPSQV+ +I+ LW+NE+ LC+   DIQ Q     GK AG SMFFL
Sbjct: 256  LSIKLVEQSSLSGSLLPSQVQEMIKLLWKNESRLCSHISDIQDQGF---GKKAGHSMFFL 312

Query: 4237 DSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQ 4058
            +++ VPPIKFRPP K GD+V EHP TVLL KV+ SNI+L +AH  ++    I+ R  DLQ
Sbjct: 313  ENIFVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNISLADAHRTKSDAYYILRRWQDLQ 372

Query: 4057 QSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAV 3878
             SVN+LFD+KT+    QKD  SGICQLL+KKEGIFRQKMMGKRVN+ACRSVISPDPYLAV
Sbjct: 373  GSVNLLFDNKTSLR-SQKDA-SGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAV 430

Query: 3877 NEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMR 3698
            NEIGIPPYFALRLTYPERVTPWN+ K+ +AI+NGP+ HPGA+ + D+ ST++L   K +R
Sbjct: 431  NEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLR 490

Query: 3697 TAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3518
            ++ SR+L SSRG +   G+  E+EFEGKVV RHL+DGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 491  SSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRV 550

Query: 3517 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVR 3338
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT GD +R
Sbjct: 551  LKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIR 610

Query: 3337 GLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQ 3158
             LIQDHIV A LLT K+TFL+  EFNQLLY SGV   G G  S    +KV + +SE  + 
Sbjct: 611  ALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMF 670

Query: 3157 TILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSREE 2978
               PA++KP+PLWTGKQVI+ALL ++T G  P TV+   KIP ++F +Q+  ++  +++ 
Sbjct: 671  LFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDT 730

Query: 2977 EEDR-TAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSRLFTIF 2801
               +   E+K LI++N+LVRGV+DKAQFG +G+VHT+QE YG+N AGILLSALSRLFT F
Sbjct: 731  SRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNF 790

Query: 2800 LQLHGFTCGIDDLVILPHYDIRR-KXXXXXXXXXXEAHCDFVKFKRGE-IGPLELQLEIE 2627
            LQ+HGFTCG+DDL+I    D  R              H +F+     E I P+ +QL +E
Sbjct: 791  LQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQLNVE 850

Query: 2626 RAISSNKEAATAALDMKMKNKLANK-GSQFNKELLLKGLLKPFPRNCIALMTITGAKGST 2450
            + I SN EAA   LD KM + L ++  S   KELL KG LKP  +N I+LMT +GAKGS 
Sbjct: 851  KKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSM 910

Query: 2449 VNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQEYYF 2270
            VNFQQISS+LGQQELEGKRVPRMVSGKTLP FP WDC+ RAGG++ DRFL+ LRPQEYYF
Sbjct: 911  VNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYF 970

Query: 2269 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDV 2090
            HCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD+TVRD+DGSIIQF+YGEDGVDV
Sbjct: 971  HCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDV 1030

Query: 2089 HRTSFLKNFKALKNNQETICQK-LRHGQKLNSYIEKLPDGLEEKVKHFWXXXXXXXXXXX 1913
            H+TSF+  F+AL  N+E I     R   + + YI KLPD L+ K ++F            
Sbjct: 1031 HQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQR--- 1087

Query: 1912 XXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFH 1733
                           +E DFL+++  KY SSLA  GEPVGVLA QSVGEP+TQMTLNTFH
Sbjct: 1088 ----------NSSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFH 1137

Query: 1732 LAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITVADM 1553
            LAGRGEMNVTLGIPRL EI++ AS +IKTP MTCP    K   DA  L  K+KKITVAD+
Sbjct: 1138 LAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADI 1197

Query: 1552 IESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTLKYVFLRELEDA 1391
            IESM+V+++P+++   ++C +YKLT+KL       K+  V+ ED E TL+  F+RELEDA
Sbjct: 1198 IESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEETLRVGFVRELEDA 1257

Query: 1390 IESHLSLLSKINGIQNFKSSLESEDSNETE-ENASSARHXXXXXXXXXXXXXXXXXDLGS 1214
            IE+H+SLL++I+GI++F+    S +  + +  N S++                   + G 
Sbjct: 1258 IENHISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQNGQTDDDDEVGDTEDAEEDGF 1317

Query: 1213 DAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEIGNRDEEEIG--DHGNEE 1040
            DAQK KQ+                           + V+  E G  DE++ G   +G++ 
Sbjct: 1318 DAQKSKQR------ATDEVDYDDGPEEETHDGEKSEDVEVSEDGKDDEDDNGVEVNGDDS 1371

Query: 1039 DIS-NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHFRFVNEPHILLAQ 863
            DI  N                                   G+ FE+HF+F+ EPHILLAQ
Sbjct: 1372 DIEVNDSDKNVTLEETSKSKKRKFEPASKKYDRRVYVKAGGMRFEIHFKFIGEPHILLAQ 1431

Query: 862  VAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTKKQSQDND--SAYWALKAAGI 689
            +AQ+TA+KV ++N GK+ QC+ I  +     + + E  +K+    +       AL+ +GI
Sbjct: 1432 IAQRTAEKVCIQNFGKVGQCKAITCK-ESGVIYYGEDDSKRDDIPSSVKEKIPALQTSGI 1490

Query: 688  DFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFGIYGVEIDFRHLSL 509
             F TFWEM+DDL V  +Y+N++ A+L  YGVEAA+  IIREV+ VF  YG+ ++ RHL L
Sbjct: 1491 HFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGISVNIRHLML 1550

Query: 508  IADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLTDYLETPSSRICL 329
            IAD+MTH+G Y+P++R G I++S SPF+K+S+ETAS FIVEAA HG  D LETPSSRICL
Sbjct: 1551 IADFMTHSGSYRPLTRSG-IADSTSPFVKISYETASNFIVEAARHGQVDTLETPSSRICL 1609

Query: 328  GLPVKMGTGCFDIMQKLDI 272
            GLPVKMGTGC D++QKL+I
Sbjct: 1610 GLPVKMGTGCIDLIQKLEI 1628


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1555 bits (4027), Expect = 0.0
 Identities = 860/1652 (52%), Positives = 1082/1652 (65%), Gaps = 33/1652 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            P P GLYDP +GP++D   C +CG+ +  C GHCGHIELV P+Y+PLLFN+L+N LQRTC
Sbjct: 60   PYPGGLYDPKLGPIEDKKACDTCGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTC 119

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSC----T 4781
            F C HF A   +VE+ VS+L+LI KGD++ AK +   +P       +S+ S +SC    T
Sbjct: 120  FICHHFMAKPYDVERAVSQLKLIIKGDIVSAKQLESNTPT------KSDSSDVSCESGVT 173

Query: 4780 IDDLNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFH 4601
             D     + S+   +  W + QF E  AV+   ++  ++ C+ CKA NP++ KP FG   
Sbjct: 174  TDSSEGCEDSDMEDQ-RWTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVR 232

Query: 4600 MD-ISSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGG 4424
            M  +    I  N +       L  +  S ENP     +  + L E +  +  K    +  
Sbjct: 233  MKAMKGSDIVANVIRG---LKLKKSTSSVENPDDFDDSGIDALSEVE--DGDKETREKST 287

Query: 4423 DQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMF 4244
            +     E+  +S     LP++VR I++ LWENE   C+F  D+      +  +    SMF
Sbjct: 288  EVVKEFEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQ----SGSEKIDYSMF 343

Query: 4243 FLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMD 4064
            FL+SVLVPPIKFRP  KGGDSVMEHP TV L KV+ SNI LGNA  N+  +SKIISR M+
Sbjct: 344  FLESVLVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKIISRWMN 403

Query: 4063 LQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 3884
            LQ+SVNVLFDSKTA    Q++ GSGICQLLEKKEG+FRQKMMGKRVN ACRSVISPDPY+
Sbjct: 404  LQESVNVLFDSKTATVQSQRE-GSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYI 462

Query: 3883 AVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKK 3704
            AVN+IGIPP FAL+LTYPERVTPWN  K+REAIINGP+ HPGA  ++D++STVKLPS++K
Sbjct: 463  AVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEK 522

Query: 3703 MRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVV 3524
             R AI+RKL SSRGA T+ G+  +  FEGK V+RH++DGD+VLVNRQPTLHKPS+MAH+V
Sbjct: 523  ARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIV 582

Query: 3523 RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3344
            RVL+GEKTLR+HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY  P+ GD 
Sbjct: 583  RVLRGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDP 642

Query: 3343 VRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGV 3164
            +R LIQDHIV +VLLT ++TFL    FNQLL+ SGV        SG   KKV V  S+  
Sbjct: 643  LRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAE 702

Query: 3163 VQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQS- 2987
            + T+ PA+ KP PLWTGKQVITA+LN +T G  P TV+   K+P  +F  +SR V+  S 
Sbjct: 703  LLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSG 762

Query: 2986 --------REEEEDRTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILL 2831
                     E  +    E+K LI KNE V GVIDKAQF  +GLVHT+ ELYG+N AG LL
Sbjct: 763  DLTKKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLL 822

Query: 2830 SALSRLFTIFLQLHGFTCGIDDLVILPHYDIRR--KXXXXXXXXXXEAHCDFVKFKRGEI 2657
            S  SRLFT+FLQ+HGFTCG+DDL+IL   D  R  +               F      +I
Sbjct: 823  SVFSRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQI 882

Query: 2656 GPLELQLEIERAISSNKEAATAALDMKMKNKLANKGSQ-FNKELLLKGLLKPFPRNCIAL 2480
             P +++  IER +  + E+A A+LD  + N L    S+    +LL  GLLK    NCI+L
Sbjct: 883  DPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGMNCISL 942

Query: 2479 MTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFL 2300
            MTI+GAKGS VNFQQISS+LGQQ+LEGKRVPRMVSGKTLP F PWD + RAGG++SDRFL
Sbjct: 943  MTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFL 1002

Query: 2299 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQ 2120
            SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD TVRDADGSIIQ
Sbjct: 1003 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSIIQ 1062

Query: 2119 FYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHG--QKLNSYIEKLPDGLEEKVKHFW 1946
            F YGEDGVDVHR+SF++ FK L  NQ+ + Q+         NSYI  LP  L+   + F 
Sbjct: 1063 FQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISDLPISLKNGAEKF- 1121

Query: 1945 XXXXXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGE 1766
                                 K +++EE+  L+LV  K+F+SLA  GEPVGVLA QSVGE
Sbjct: 1122 ---------VEAMPMNERIASKFVRQEEL--LKLVKSKFFASLAQPGEPVGVLAAQSVGE 1170

Query: 1765 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLL 1586
            PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+ DIKTPIMTCP L  K K DA  + 
Sbjct: 1171 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDIT 1230

Query: 1585 AKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTL 1424
             K++KITVAD+I+SM+++++P +++ ++VC ++KL + L       KH  ++ +D E T+
Sbjct: 1231 GKLRKITVADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKDWEETM 1290

Query: 1423 KYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSARHXXXXXXXXXXX 1244
              VFLR+LEDAIE H+ +L +I GI N K     E  NET +N  S              
Sbjct: 1291 TVVFLRKLEDAIEIHMKMLHRIRGICNDKG---PEAGNET-DNDDSVSGKQNKDDGDDDG 1346

Query: 1243 XXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEK---SVQGQEIGNRD 1073
                  DLGSDAQK+K+Q                           +     +  E+   D
Sbjct: 1347 EGTEVDDLGSDAQKQKKQVTDEMDYEENSEDETNEPSSISGVEDPEMDSENEDAEVSKED 1406

Query: 1072 ---EEEIGDHGNEEDISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVH 902
                +E  D   EE +                                    EG  FEVH
Sbjct: 1407 TPEPQEEADVSKEETMEPQKEVKAVKNVKEQSKKKRRKFVGATSDRHIFVRGEGEKFEVH 1466

Query: 901  FRF-VNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDE-KQTKKQSQD 728
            F+F  ++PHILLAQ+AQKTA+KVY+++SGKI++C +      +     D  K+ ++ S D
Sbjct: 1467 FQFATDDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCGDPQVIYHGDNPKERREISND 1526

Query: 727  NDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFG 548
               A  AL A+G+DF   WE QD LDV  +Y+N+I  MLN +GVEAAR +IIRE+  VF 
Sbjct: 1527 EKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVFGVEAARETIIREINHVFK 1586

Query: 547  IYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGL 368
             YG+ +  RHL+LIADYMT +GGY+PMSR G I+ES SPF +M+FETA+KFIV+AA++G 
Sbjct: 1587 SYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGE 1646

Query: 367  TDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
             D LETPS+RICLGLP   GTGCFD+MQ++++
Sbjct: 1647 KDTLETPSARICLGLPALSGTGCFDLMQRVEL 1678


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 1554 bits (4024), Expect = 0.0
 Identities = 862/1685 (51%), Positives = 1092/1685 (64%), Gaps = 66/1685 (3%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP GLYDP MGPLDD + CKSCG+ S  C GHCGHIELV P+Y+PLLFN+L+N LQRTC
Sbjct: 47   PVPGGLYDPLMGPLDDRTSCKSCGQLSLVCPGHCGHIELVYPIYHPLLFNLLYNFLQRTC 106

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F+C HF A++ +VE+CVS+L+LI KG+++ AK +   + D S + E SE     C   D+
Sbjct: 107  FFCHHFMANKNDVERCVSQLKLIMKGNLVAAKQLDSRATDSSEECEDSEMEKERCEDSDM 166

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHM-DI 4592
              Q          W + QF E   ++N  L+ K++ C +CKAK PK+ KP FG   +  +
Sbjct: 167  GKQ---------RWTSLQFAEVTDLMNTFLRLKSKSCGSCKAKPPKLEKPMFGWVRIVGM 217

Query: 4591 SSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEA-DGLENSKAHGRQGGDQS 4415
            S+  I  N +       +  +  S ENP+    +  + L E  DG E  K   R+  + +
Sbjct: 218  SASAIGANVIRG---IKVKKSASSVENPNDSDDSGIDALSEVEDGSEKKK---RKSSEVA 271

Query: 4414 DVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDI-QSQHRNTPGKVAGPSMFFL 4238
            +   + +++      PS+V+ I++ LWENE   C+F  D+ QS+  N        SMFFL
Sbjct: 272  EEFAKHQNNTRRDLFPSEVKKILKGLWENEHEFCSFIGDLWQSESENVDY-----SMFFL 326

Query: 4237 DSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQ 4058
            +++LVPP KFR P KGGDSVMEHP TV L KV+ SNI+LGNA  N+  + KIISR M+LQ
Sbjct: 327  ENILVPPTKFRAPTKGGDSVMEHPQTVGLNKVLESNISLGNACTNKLDQPKIISRWMNLQ 386

Query: 4057 QSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAV 3878
            +SVNVLFDSKTA    QK+ G+GICQ LEKKEG+FRQKMMGKRVN ACRSVISPDP++AV
Sbjct: 387  ESVNVLFDSKTATVKSQKE-GTGICQTLEKKEGLFRQKMMGKRVNHACRSVISPDPFIAV 445

Query: 3877 NEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMR 3698
            N+IGIPP FAL+LTYPERVTPWN  K+REAIINGP+ HPGA  ++D++ST+KLP ++K R
Sbjct: 446  NDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKVSTMKLPPTRKAR 505

Query: 3697 TAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3518
             AI+RKL SSRG  T+ G+  +  FEGKVV RH+QDGD+VLVNRQPTLHKPSIMAH+VRV
Sbjct: 506  IAIARKLFSSRGVTTELGKTCDVNFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRV 565

Query: 3517 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVR 3338
            LKGEKTLR+HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY  P+ GD +R
Sbjct: 566  LKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYSRPSNGDPLR 625

Query: 3337 GLIQ--------------------------------DHIVGAVLLTMKNTFLTLHEFNQL 3254
             LIQ                                DHIV +VLLT ++TFL   EFNQL
Sbjct: 626  ALIQVVHPSYFFKSLYSFHELGCLPVIFMDLACTQQDHIVSSVLLTKRDTFLDKDEFNQL 685

Query: 3253 LYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQTILPAVWKPKPLWTGKQVITALLNHLTN 3074
            L+ SGV        SG   KKV    S   + T+ PA+ KP PLWTGKQVITA+LN +T 
Sbjct: 686  LFSSGVTDMVLSSFSGRSGKKVIQSASNAELLTVTPAILKPVPLWTGKQVITAVLNEITK 745

Query: 3073 GCAPCTVKNKGKIPYAYFLSQSRLVEYQSREEEEDRTA---------------ENKFLIW 2939
            G  P +V+   K+P  +F  +S+ V+ +S E  E                   E+K L+ 
Sbjct: 746  GHPPFSVEKATKLPVDFFKCRSKEVKCKSGESNEKNHLTTKQDFDESWKKDLNEDKLLVR 805

Query: 2938 KNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSRLFTIFLQLHGFTCGIDDLV 2759
            KNE VRGVIDKAQF  +GLVHT+ ELYG+N AG LLS  SRLFT+FLQL GFTCG+DDL+
Sbjct: 806  KNEFVRGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQLQGFTCGVDDLI 865

Query: 2758 ILPHYDIRR--KXXXXXXXXXXEAHCDFVKFKRGEIGPLELQLEIERAISSNKEAATAAL 2585
            IL   D  R  +               F      +I P +++  IER +  + E+A A+L
Sbjct: 866  ILKDMDGERTKQLQECEQVGERVLRKTFGIAVDVQIDPQDMKSRIERILYEDGESALASL 925

Query: 2584 DMKMKNKLANKGSQ-FNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQE 2408
            D  + N+L    S+    +LL  GLLKP  +NCI+LMTI+GAKGS VNFQQISS+LGQQ+
Sbjct: 926  DRSVVNELNQCSSKGVMNDLLSDGLLKPPGKNCISLMTISGAKGSKVNFQQISSHLGQQD 985

Query: 2407 LEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAV 2228
            LEGKRVPRMVSGKTLP F PWD + RAGG++SDRFLSGLRPQEYYFHCMAGREGLVDTAV
Sbjct: 986  LEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAV 1045

Query: 2227 KTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKN 2048
            KTSRSGYLQRCL+KNLESLKV YD TVRDADGSIIQF YGEDGVDVHR+SF+  F+ L  
Sbjct: 1046 KTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGKFRELTV 1105

Query: 2047 NQETICQKLRHG--QKLNSYIEKLPDGLEEKVKHFWXXXXXXXXXXXXXXXXXXEIVKQL 1874
            NQ+ I Q+         +SYI  LP  L+   + F                    I  +L
Sbjct: 1106 NQDMILQRCSEDMLSGSSSYITDLPITLKNGAEKF-----------VEAMPMNERIASKL 1154

Query: 1873 KEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1694
              +E D L+LV  K+F+SLA  GEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGI
Sbjct: 1155 VRQE-DLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1213

Query: 1693 PRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITVADMIESMEVNLLPLSI 1514
            PRLQEILMTA+ +IKTPIMTCP L  K   DA+ +  K++KI VAD+I+SMEV+++P ++
Sbjct: 1214 PRLQEILMTAAANIKTPIMTCPLLKGKTTDDAKKITDKLRKIAVADIIKSMEVSVIPYAV 1273

Query: 1513 HNHQVCQLYKLTVKL------KKHDFVSSEDCEYTLKYVFLRELEDAIESHLSLLSKING 1352
            H  +VC ++KL +KL       KH  ++ ED + T+  +FLR+LEDAIE H+ +L +I G
Sbjct: 1274 HEGEVCSIHKLKIKLYKPEHYPKHTDITDEDWKETMTVMFLRKLEDAIEIHVKMLVRIRG 1333

Query: 1351 IQNFKSSLESEDSNETEENASSARHXXXXXXXXXXXXXXXXXDLGSDAQKRKQQXXXXXX 1172
            I++ K +      NET+ + S +                   DLG+DAQK+K+Q      
Sbjct: 1334 IKSEKDT-RPTSGNETDNDDSVSGKHTEDDDDDDEGEGTEVDDLGADAQKQKKQAVDVVD 1392

Query: 1171 XXXXXXXXXXXXXXXXXXXXEKSVQGQEIGNRDEEEIGDHGNEEDIS---NXXXXXXXXX 1001
                                 ++    E      EE  +   + D+S             
Sbjct: 1393 YEENSEDEKDEPSSISGVEDPETDNEDENAEVSREETPEPQEDADVSKEETLEPQKEVKN 1452

Query: 1000 XXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHFRFVN-EPHILLAQVAQKTAKKVYVEN 824
                                     +G  FEVHF+F++ EPHILL+Q+AQKTA+KVY++N
Sbjct: 1453 VEEGSRKKRRKFVPGKNDRHIFAKFKGKTFEVHFKFLSEEPHILLSQIAQKTAQKVYIQN 1512

Query: 823  SGKIDQCRMIKYEVTENTVMWDE-KQTKKQSQDNDSAYWALKAAGIDFGTFWEMQDDLDV 647
            SGKI++  +      +     D  K+ ++ S D   A  AL A+G+DF   WE QD LDV
Sbjct: 1513 SGKIERSTVANCGDPQVIYYGDNPKEREEISNDEKKASPALHASGVDFLALWEYQDKLDV 1572

Query: 646  SRIYTNNIRAMLNTYGVEAARASIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPM 467
              +Y+N+I  MLNT+GVEAAR +IIRE+  VF  YG+ +  RHL+LIADYMT +GGY+PM
Sbjct: 1573 RYLYSNSIHDMLNTFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPM 1632

Query: 466  SRHGSISESLSPFLKMSFETASKFIVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIM 287
            SR G I+ES SPF +M+FETA+KFIV+AA++G  D LETPS+RICLGLP   GTGCFD++
Sbjct: 1633 SRMGGIAESTSPFCRMTFETATKFIVQAATYGEVDRLETPSARICLGLPALSGTGCFDLL 1692

Query: 286  QKLDI 272
            Q++++
Sbjct: 1693 QRMEL 1697


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1546 bits (4004), Expect = 0.0
 Identities = 809/1318 (61%), Positives = 964/1318 (73%), Gaps = 5/1318 (0%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            P P GLYDPA+GPL D S C SCG+RS+HC GH GHI+LV PVYNPL F  L N+L   C
Sbjct: 38   PFPGGLYDPALGPLGDSSKCLSCGQRSYHCPGHFGHIDLVFPVYNPLSFKFLRNILNTAC 97

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F C HF+  R EVE CVS+L LI KGD+ GA+ +  +          ++GSH + ++   
Sbjct: 98   FSCRHFKVGRLEVETCVSQLHLIRKGDIAGARRLRSLG-----GLSDNQGSHSTGSVVLS 152

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMDIS 4589
              +   + N   SWD+ Q TEAM V+N   + K +KC NC++++PKI+ P FG F+   +
Sbjct: 153  ESESGQDLNWCRSWDSIQLTEAMGVLNEFFRKKEKKCKNCESRSPKITNPIFGWFYAVYA 212

Query: 4588 SKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGGDQSDV 4409
              R              H   G ++ PS E   A+  +  AD   NS   G      +  
Sbjct: 213  IHRSSSK--------GTHIREGKDK-PSPENSEASSSIISADSPGNSGKKGSSSNKLNLG 263

Query: 4408 IEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLDSV 4229
            +  QR       LPS+VR ++  LWENE  LC+F CDIQ Q     G     S+FF +++
Sbjct: 264  LVGQRHL-----LPSEVREMVMQLWENEESLCSFICDIQQQQGKLSGNRMDYSIFFFETI 318

Query: 4228 LVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQQSV 4049
            LV PIKFR P +GG+SVMEHPHTVLLGKV+ SNIAL NA       SK IS  M+LQQS+
Sbjct: 319  LVNPIKFRAPTRGGNSVMEHPHTVLLGKVLESNIALRNAQ-----PSKFISHWMELQQSI 373

Query: 4048 NVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEI 3869
            NVLFD K++    +K   SGICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEI
Sbjct: 374  NVLFDGKSSTS--KKAGVSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEI 431

Query: 3868 GIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMRTAI 3689
            GIPPYFALRLTYPERVTPWNA K+R A++NGP+ HPGA ++ D ++T+KLP +KK R A+
Sbjct: 432  GIPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDSVATMKLPLNKKARVAL 491

Query: 3688 SRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3509
            SRKLPSSRGA  + G + + +FEGKVV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 492  SRKLPSSRGATAEVGES-QLDFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 550

Query: 3508 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLI 3329
            E+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLI
Sbjct: 551  ERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 610

Query: 3328 QDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQTIL 3149
            QDHIV AVLLT+K TFLT  EFNQLLYGSGVFA G      N S+KVS    +G++  IL
Sbjct: 611  QDHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLINPIL 670

Query: 3148 PAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSREEEED 2969
            PA+WKP+PLWTGKQVI+ALLNH+T G APC VKN+ K+P  YF     +      +E+ED
Sbjct: 671  PAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFTDNPAM-----EDEDED 725

Query: 2968 RTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSRLFTIFLQLH 2789
            + AEN FL+WKNELVRGVIDKAQFGKFGLVHT+QELYG+  AG LL+A SRLFT+FLQ+H
Sbjct: 726  QNAENNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLTAFSRLFTMFLQIH 785

Query: 2788 GFTCGIDDLVILPHYDIRRKXXXXXXXXXXEAHCDFVKFKRGEIGPLELQLEIERAISSN 2609
            GFTCG+DDL+ILP YD++RK          E HCDF+ FK G+IG  ELQLEIE+AI  +
Sbjct: 786  GFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGREELQLEIEKAICRD 845

Query: 2608 KEAATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNF 2441
            +E+ATA LDMKMKNKL  K    GSQ  K LL  GLLKPFP+NCI++MT TGAKGSTVNF
Sbjct: 846  RESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISVMTTTGAKGSTVNF 905

Query: 2440 QQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCM 2261
            QQIS+YLGQQELEGKRVPRMVSGKTLPSFPPWD ASRAGG+++DRFLSGLRPQEYYFHCM
Sbjct: 906  QQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFLSGLRPQEYYFHCM 965

Query: 2260 AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRT 2081
            AGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YDYTVRDADGSIIQF YGEDGVD H+T
Sbjct: 966  AGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQFCYGEDGVDAHKT 1025

Query: 2080 SFLKNFKALKNNQETICQKLRHGQKLNSYIEKLPDGLEEKVKHFWXXXXXXXXXXXXXXX 1901
            SFLKNFKAL NNQETI QK ++  + N YI+KLP+GLEE+  HF                
Sbjct: 1026 SFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHF------------IQKA 1073

Query: 1900 XXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGR 1721
                 VKQ+ +    F+ +V QK+ SSL  +GEPVGV+A QS+GEPSTQMTLNTFHLAGR
Sbjct: 1074 QTLSSVKQVVDHH-KFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQMTLNTFHLAGR 1132

Query: 1720 GEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITVADMIESM 1541
            GEMNVTLGIPRLQEILMTAS+ I+TP++TCPFL  + K +A S+++ +KKIT+AD+IESM
Sbjct: 1133 GEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKKITIADLIESM 1192

Query: 1540 EVNLLPLSIHNHQVCQLYKLTVKLKKHDFVSSEDCEYTLKYVFLRELEDAIESHLSLLSK 1361
            +V+   +S H  +V ++YKL ++LK  +FVS ED   TLK  FL+ELEDA+E+H+  L K
Sbjct: 1193 DVS---ISFH-PKVGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALENHVVFLKK 1248

Query: 1360 INGIQNFKSSLESEDSNETEEN-ASSARHXXXXXXXXXXXXXXXXXDLGSDAQKRKQQ 1190
            +  I +F S    E  +E EE+ AS                     DL SD QKR+QQ
Sbjct: 1249 VAVINDFASHSRFEALSEGEEDKASDGAQEAEEEGDDDGGDSDAGEDLDSDVQKRRQQ 1306



 Score =  293 bits (750), Expect = 5e-76
 Identities = 143/221 (64%), Positives = 183/221 (82%), Gaps = 8/221 (3%)
 Frame = -3

Query: 925  EGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSG-KIDQCRMIKYEVTENTVMWDEKQ 749
            EGL  EVHF+F +EPH+LLAQV QKTAKKVYV+ +G K++QC++++Y+  E TV+WD+ +
Sbjct: 1406 EGLSLEVHFKFTSEPHVLLAQVVQKTAKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDDK 1465

Query: 748  TKKQSQ------DNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAA 587
             K+++       D+D+AYWA+KA+G D  +FWEM D LD++R+Y NNI +ML TYGVEAA
Sbjct: 1466 KKEKATKNGRKADDDAAYWAVKASGSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAA 1525

Query: 586  RASIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFET 407
             A+IIRE+K VF IYGV+ID+RHLSLI D+M H GGY+PMSRHGSI +S+SPFLKMSFET
Sbjct: 1526 SATIIREMKNVFDIYGVKIDYRHLSLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFET 1585

Query: 406  ASKFIVEAASHGLTDYLETPSSRICLGLPVKMGT-GCFDIM 287
            ASKFIVEAA +GL D LE+PSSRICLGLPV++GT G FD+M
Sbjct: 1586 ASKFIVEAAIYGLRDDLESPSSRICLGLPVRVGTGGPFDLM 1626


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1543 bits (3995), Expect = 0.0
 Identities = 856/1651 (51%), Positives = 1081/1651 (65%), Gaps = 32/1651 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            P P GLYD  +GP DD   C SCG+    C GHCGHIELV P+Y+PLLFN+L N LQR C
Sbjct: 60   PFPGGLYDLKLGPKDDKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRAC 119

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F+C HF A   +VE+ VS+L+LI KGD++ AK +   +P  S   ++S  S ++ T    
Sbjct: 120  FFCHHFMAKPEDVERAVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVT-TDSSE 178

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD-I 4592
              +D    ++R  W + QF E  AV+   ++  ++ CS CK  NPK+ KP FG   M  +
Sbjct: 179  ECEDSDVEDQR--WTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAM 236

Query: 4591 SSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEA-DGLENSKAHGRQGGDQS 4415
                +  N +       L  +  S ENP     +  + L E  DG + ++    +   + 
Sbjct: 237  KDSDVGANVIRG---LKLKKSTSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEF 293

Query: 4414 DVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLD 4235
            +    +RD      LPS+VRNI++HLW+NE   C+F  D+      +  +    SMFFL+
Sbjct: 294  EEHNSKRDL-----LPSEVRNILKHLWQNEHEFCSFIGDLWQ----SGSEKIDYSMFFLE 344

Query: 4234 SVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDLQQ 4055
            SVLVPP KFRPP  GGDSVMEHP TV L KVI SN  LGNA  N+  +SK+I R  +LQ+
Sbjct: 345  SVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQE 404

Query: 4054 SVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVN 3875
            SVNVLFDSKTA    Q+D  SGICQLLEKKEG+FRQKMMGKRVN ACRSVISPDPY+AVN
Sbjct: 405  SVNVLFDSKTATVQSQRD-SSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVN 463

Query: 3874 EIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMRT 3695
            +IGIPP FAL+LTYPERVTPWN  K+REAIINGP+ HPGA  ++D+ ST+KLPS++K R 
Sbjct: 464  DIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARR 523

Query: 3694 AISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 3515
            AI+RKL SSRGA T+ G+  +  FEGK V+RH++DGDIVLVNRQPTLHKPS+MAH VRVL
Sbjct: 524  AIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVL 583

Query: 3514 KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRG 3335
            KGEKTLR+HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY  P+ G+ +R 
Sbjct: 584  KGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRA 643

Query: 3334 LIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQT 3155
            LIQDHIV +VLLT ++TFL    FNQLL+ SGV        SG   KKV V  S+  + T
Sbjct: 644  LIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLT 703

Query: 3154 ILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQS---- 2987
            + PA+ KP PLWTGKQVITA+LN +T G  P TV+   K+P  +F  +SR V+  S    
Sbjct: 704  VTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLT 763

Query: 2986 REEEEDRT-----AENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSAL 2822
            +++E D +      E+K  I KNE V GVIDKAQF  +GLVHT+ ELYG+N AG LLS  
Sbjct: 764  KKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVF 823

Query: 2821 SRLFTIFLQLHGFTCGIDDLVILPHYDIRR--KXXXXXXXXXXEAHCDFVKFKRGEIGPL 2648
            SRLFT+FLQ HGFTCG+DDL+IL   D  R  +               F      +I P 
Sbjct: 824  SRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQ 883

Query: 2647 ELQLEIERAISSNKEAATAALDMKMKNKLANKGSQ-FNKELLLKGLLKPFPRNCIALMTI 2471
            +++  IER +  + E+A A+LD  + N L    S+    +LL  GLLK   RNCI+LMTI
Sbjct: 884  DMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTI 943

Query: 2470 TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGL 2291
            +GAKGS VNFQQISS+LGQQ+LEGKRVPRMVSGKTLP F PWD + RAGG++SDRFLSGL
Sbjct: 944  SGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGL 1003

Query: 2290 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYY 2111
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDADGSIIQF Y
Sbjct: 1004 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQY 1063

Query: 2110 GEDGVDVHRTSFLKNFKALKNNQETICQKLRHG--QKLNSYIEKLPDGLEEKVKHFWXXX 1937
            GEDGVDVHR+SF++ FK L  NQ+ + QK         +SYI  LP  L++  + F    
Sbjct: 1064 GEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKF---- 1119

Query: 1936 XXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPST 1757
                              K +++EE+  L+LV  K+F+SLA  GEPVGVLA QSVGEPST
Sbjct: 1120 ------VEAMPMNERIASKFVRQEEL--LKLVKSKFFASLAQPGEPVGVLAAQSVGEPST 1171

Query: 1756 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKV 1577
            QMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+ +IKTPIMTCP L  K K DA  +  ++
Sbjct: 1172 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRL 1231

Query: 1576 KKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTLKYV 1415
            +KITVAD+I+SME++++P +++ ++VC ++KL + L       KH  ++ ED E T++ V
Sbjct: 1232 RKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAV 1291

Query: 1414 FLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSARHXXXXXXXXXXXXXX 1235
            FLR+LEDAIE+H+ +L +I GI N  +   + +  + +++ S  ++              
Sbjct: 1292 FLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQN---EDDGDDDGEGT 1348

Query: 1234 XXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEIGNRDEE---- 1067
               DLGSDAQK+K+Q                            S+ G E    D E    
Sbjct: 1349 EVDDLGSDAQKQKKQ---------ETDEMDYEENSEDETNEPSSISGVEDPEMDSENEDT 1399

Query: 1066 ----EIGDHGNEEDISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHFEVHF 899
                E      EE +                                    EG  FEVHF
Sbjct: 1400 EVSKEDTPEPQEESMEPQKEVKGVKNVKEQSKKKRRKFVRAKSDRHIFVKGEGEKFEVHF 1459

Query: 898  RF-VNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDE-KQTKKQSQDN 725
            +F  ++PHILLAQ+AQ+TA+KVY++NSGKI++C +      +     D  K+ ++ S D 
Sbjct: 1460 KFATDDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDE 1519

Query: 724  DSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIREVKTVFGI 545
              A  AL A+G+DF   WE QD LDV  +Y+N+I  MLN +GVEAAR +IIRE+  VF  
Sbjct: 1520 KKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKS 1579

Query: 544  YGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLT 365
            YG+ +  RHL+LIADYMT +GGY+PMSR G I+ES SPF +M+FETA+KFIV+AA++G  
Sbjct: 1580 YGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEK 1639

Query: 364  DYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            D LETPS+RICLGLP   GTGCFD+MQ++++
Sbjct: 1640 DTLETPSARICLGLPALSGTGCFDLMQRVEL 1670


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score = 1519 bits (3934), Expect = 0.0
 Identities = 832/1423 (58%), Positives = 995/1423 (69%), Gaps = 46/1423 (3%)
 Frame = -3

Query: 4402 QQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLDSVLV 4223
            +Q++ FS   LPS+V+ I + LWENE  LC+   DIQ Q     GK  G SMFFL+++LV
Sbjct: 2    KQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILV 58

Query: 4222 PPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRL-MDLQQSVN 4046
            PPIKFR P KGGDSVMEHP TVLL KV+ +NI+LGNA+ N    SK + RL MDLQQSVN
Sbjct: 59   PPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVN 118

Query: 4045 VLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIG 3866
            +LFDSKTA   G +DV SGICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG
Sbjct: 119  LLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIG 177

Query: 3865 IPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMRTAIS 3686
            IPPYFALRLTYPERVTPWN VK+REAIING E HPGA  + D++ST +LP S+K R +IS
Sbjct: 178  IPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISIS 237

Query: 3685 RKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 3506
            RKLPSSRGA+ Q G+N +YEFEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 238  RKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 297

Query: 3505 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQ 3326
            KT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQ
Sbjct: 298  KTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQ 357

Query: 3325 DHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQTILP 3146
            DHIV AVLLT ++TFL+  EFNQLLY SGV +      SG   +KV V  SE  +  I+P
Sbjct: 358  DHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIP 417

Query: 3145 AVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSREEEEDR 2966
            A+ KPKPLWTGKQVI+++L+H+T G  P TV    KIP  +F ++    +  SREE + +
Sbjct: 418  AILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPK 477

Query: 2965 T----------------AENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGIL 2834
                              E K LI++N+LVRGVIDKAQF  +GLVHT+QELYG+N AGIL
Sbjct: 478  NDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGIL 537

Query: 2833 LSALSRLFTIFLQLHGFTCGIDDLVILPHYDI-RRKXXXXXXXXXXEAHCDFVKFK-RGE 2660
            LS  SRLFT+FLQ+HGFTCG+DDL+I+   DI R+K          EAH +    K   E
Sbjct: 538  LSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSE 597

Query: 2659 IGPLELQLEIERAISSNKEAATAALDMKMKNKL-ANKGSQFNKELLLKGLLKPFPRNCIA 2483
              P ELQLEIER I  + E A  ALD KM + L  N       ELL +GL+K    NCI+
Sbjct: 598  TAPTELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCIS 657

Query: 2482 LMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRF 2303
            LMT +GAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLP F PWD A+RAGG++SDRF
Sbjct: 658  LMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRF 717

Query: 2302 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 2123
            LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGSI+
Sbjct: 718  LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIV 777

Query: 2122 QFYYGEDGVDVHRTSFLKNFKALKNNQETICQKL--RHGQKLNSYIEKLPDGLEEKVKHF 1949
            QF YGEDG+DVH+TSF+  F+AL  NQ+ + +KL  + G+  +S  + LPDGL  K + F
Sbjct: 778  QFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDS-DKILPDGLRSKAEQF 836

Query: 1948 WXXXXXXXXXXXXXXXXXXEIVKQLKEEEV---DFLELVGQKYFSSLADSGEPVGVLAGQ 1778
                               E +K+ + +++   DFL L+  K+ SSLA  GEPVGVLA Q
Sbjct: 837  -----------------IREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQ 879

Query: 1777 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDA 1598
            SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS DI+TP+MTCP    K K DA
Sbjct: 880  SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDA 939

Query: 1597 QSLLAKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKKHD------FVSSEDC 1436
              L  K+KKITVAD++ESMEV++ P ++ N  +C +YKL + L K D       ++ +DC
Sbjct: 940  LCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDC 999

Query: 1435 EYTLKYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSAR----HXXX 1268
            E+ LK VFLRELEDAI++HL LLSKI+GI+ F    +   SNE +E+ S  R        
Sbjct: 1000 EHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDD 1059

Query: 1267 XXXXXXXXXXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQE 1088
                          DLG DAQK+KQQ                          E  +   E
Sbjct: 1060 DDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDE 1119

Query: 1087 IGNRDEEEIG-DHG---------NEEDISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 938
             G      IG D+G         N E+ SN                              
Sbjct: 1120 TGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFVRKESDRAI 1179

Query: 937  XXXVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVM-W 761
               + GL FEVHF+  NEPHILLAQ+A+KTAKKVY+++ GKIDQCR+   + +EN V  +
Sbjct: 1180 FNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYY 1237

Query: 760  DEKQTKKQSQDNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARA 581
             E   K++S  +     AL   G+DFG FW+M+D +DV  +Y+N+I AMLNTYGVEAAR 
Sbjct: 1238 GEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARE 1297

Query: 580  SIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETAS 401
            +IIRE+  VF  YG+ ++ RHL+LIAD+MTH+G Y+PMSR G I+ES+SPF KMSFETAS
Sbjct: 1298 TIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETAS 1357

Query: 400  KFIVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            KFIVEAA HGL D LETPSSRICLGLPVKMGTG FD+MQK++I
Sbjct: 1358 KFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1400


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score = 1513 bits (3918), Expect = 0.0
 Identities = 830/1422 (58%), Positives = 993/1422 (69%), Gaps = 45/1422 (3%)
 Frame = -3

Query: 4402 QQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFFLDSVLV 4223
            +Q++ FS   LPS+V+ I + LWENE  LC+   DIQ Q     GK  G SMFFL+++LV
Sbjct: 2    KQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILV 58

Query: 4222 PPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRL-MDLQQSVN 4046
            PPIKFR P KGGDSVMEHP TVLL KV+ +NI+LGNA+ N    SK + RL MDLQQSVN
Sbjct: 59   PPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVN 118

Query: 4045 VLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIG 3866
            +LFDSKTA   G +DV SGICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG
Sbjct: 119  LLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIG 177

Query: 3865 IPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKMRTAIS 3686
            IPPYFALRLTYPERVTPWN VK+REAIING E HPGA  + D++ST +LP S+K R +IS
Sbjct: 178  IPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISIS 237

Query: 3685 RKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 3506
            RKLPSSRGA+ Q G+N +YEFEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 238  RKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 297

Query: 3505 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQ 3326
            KT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQ
Sbjct: 298  KTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQ 357

Query: 3325 DHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGVVQTILP 3146
            DHIV AVLLT ++TFL+  EFNQLLY SGV +      SG   +KV V  SE  +  I+P
Sbjct: 358  DHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIP 417

Query: 3145 AVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSREEEEDR 2966
            A+ KPKPLWTGKQVI+++L+H+T G  P TV    KIP  +F ++    +  SREE + +
Sbjct: 418  AILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPK 477

Query: 2965 T----------------AENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGIL 2834
                              E K LI++N+LVRGVIDKAQF  +GLVHT+QELYG+N AGIL
Sbjct: 478  NDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGIL 537

Query: 2833 LSALSRLFTIFLQLHGFTCGIDDLVILPHYDI-RRKXXXXXXXXXXEAHCDFVKFKRGEI 2657
            LS  SRLFT+FLQ+HGFTCG+DDL+I+   DI R+K          EAH +    K    
Sbjct: 538  LSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN-- 595

Query: 2656 GPLELQLEIERAISSNKEAATAALDMKMKNKL-ANKGSQFNKELLLKGLLKPFPRNCIAL 2480
               ELQLEIER I  + E A  ALD KM + L  N       ELL +GL+K    NCI+L
Sbjct: 596  SETELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISL 655

Query: 2479 MTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFL 2300
            MT +GAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLP F PWD A+RAGG++SDRFL
Sbjct: 656  MTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFL 715

Query: 2299 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQ 2120
            SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGSI+Q
Sbjct: 716  SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQ 775

Query: 2119 FYYGEDGVDVHRTSFLKNFKALKNNQETICQKL--RHGQKLNSYIEKLPDGLEEKVKHFW 1946
            F YGEDG+DVH+TSF+  F+AL  NQ+ + +KL  + G+  +S  + LPDGL  K + F 
Sbjct: 776  FIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDS-DKILPDGLRSKAEQF- 833

Query: 1945 XXXXXXXXXXXXXXXXXXEIVKQLKEEEV---DFLELVGQKYFSSLADSGEPVGVLAGQS 1775
                              E +K+ + +++   DFL L+  K+ SSLA  GEPVGVLA QS
Sbjct: 834  ----------------IREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQS 877

Query: 1774 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQ 1595
            VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS DI+TP+MTCP    K K DA 
Sbjct: 878  VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDAL 937

Query: 1594 SLLAKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKKHD------FVSSEDCE 1433
             L  K+KKITVAD++ESMEV++ P ++ N  +C +YKL + L K D       ++ +DCE
Sbjct: 938  CLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCE 997

Query: 1432 YTLKYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEENASSAR----HXXXX 1265
            + LK VFLRELEDAI++HL LLSKI+GI+ F    +   SNE +E+ S  R         
Sbjct: 998  HILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDD 1057

Query: 1264 XXXXXXXXXXXXXDLGSDAQKRKQQXXXXXXXXXXXXXXXXXXXXXXXXXXEKSVQGQEI 1085
                         DLG DAQK+KQQ                          E  +   E 
Sbjct: 1058 DDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDET 1117

Query: 1084 GNRDEEEIG-DHG---------NEEDISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 935
            G      IG D+G         N E+ SN                               
Sbjct: 1118 GTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIF 1177

Query: 934  XXVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVM-WD 758
              + GL FEVHF+  NEPHILLAQ+A+KTAKKVY+++ GKIDQCR+   + +EN V  + 
Sbjct: 1178 NAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYYG 1235

Query: 757  EKQTKKQSQDNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARAS 578
            E   K++S  +     AL   G+DFG FW+M+D +DV  +Y+N+I AMLNTYGVEAAR +
Sbjct: 1236 EDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARET 1295

Query: 577  IIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASK 398
            IIRE+  VF  YG+ ++ RHL+LIAD+MTH+G Y+PMSR G I+ES+SPF KMSFETASK
Sbjct: 1296 IIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASK 1355

Query: 397  FIVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            FIVEAA HGL D LETPSSRICLGLPVKMGTG FD+MQK++I
Sbjct: 1356 FIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1397


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1499 bits (3880), Expect = 0.0
 Identities = 794/1339 (59%), Positives = 973/1339 (72%), Gaps = 26/1339 (1%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PVP GLYDPA+GPL + + CK+CG+RS +C GHCGHI+LVSPVYNPLLFN LH LLQRTC
Sbjct: 48   PVPGGLYDPALGPLSERTICKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTC 107

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F CFHFR  R +VEKC+ +LELI KGD++GAK +  VSP  +   E+S+ SH SC     
Sbjct: 108  FLCFHFRMQRGQVEKCIKQLELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHS 167

Query: 4768 NMQ-DHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD- 4595
             +Q +  E+ ++  W + QFTEAM+V+N  LK K +KC NC++ NP I+KP+FG FH   
Sbjct: 168  GVQCNDGEHTRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSG 227

Query: 4594 ISSKRIRENYLNNGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQGGDQS 4415
            +S   IR N +   Q   L    GSE   + +V +A EP  +  G +  K   R+     
Sbjct: 228  MSDASIRANVITGHQLGGLL---GSEIEGTTDVEDAAEPGDQHSGTKKHKKKERK----- 279

Query: 4414 DVIE--QQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSMFF 4241
            +V+E  +Q+ +FS   LPS+V+  +E LW+NEA +C+F  D+Q Q      + AGP+MFF
Sbjct: 280  EVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFGK--RKAGPAMFF 337

Query: 4240 LDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLMDL 4061
            L+++LVPPIKFRPP KGGDSVMEHP TVLL KV+ SNI+LG+AHIN+   SKI+ R +DL
Sbjct: 338  LETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINKE-HSKIVRRWLDL 396

Query: 4060 QQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLA 3881
            QQS+N LFDSKTA GPGQ++   GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPY+ 
Sbjct: 397  QQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIG 456

Query: 3880 VNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSKKM 3701
            VNEIGIPP FA++LTYPERVTPWN  K+R A+ING E HPGA  + D++S  KLP ++K 
Sbjct: 457  VNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKA 516

Query: 3700 RTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 3521
            R +ISRKLPSSRGAVTQ+G+  E EFEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVR
Sbjct: 517  RISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 576

Query: 3520 VLKGEKTLRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3344
            VLKGEKTLRMHYANCS TYNADFDGDEMNVHFPQDE+SRAEAYNIVNAN Q++ P+ G+ 
Sbjct: 577  VLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEP 636

Query: 3343 VRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEGV 3164
            +RGLIQDHIV AVLLT K+TFL+  EFNQLLY SGV   GP    G   +KV    SE  
Sbjct: 637  LRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDE 696

Query: 3163 VQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQSR 2984
            +QT+ PA+WKPKPLWTGKQVITA+LNH+T+   P TV+   KIP  +F S++   +   +
Sbjct: 697  IQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRAN-EDKPCQ 755

Query: 2983 EEEEDRTA-------ENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSA 2825
            EE+ D+ A       E K L++KNELVRGVIDK QFG++GLVHT+ EL G++ AGILLS 
Sbjct: 756  EEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSV 815

Query: 2824 LSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKXXXXXXXXXXEA-HCDF--VKFKRGEIG 2654
            LSRLFT +LQ+HGFTCG+DDL+IL + D  RK          EA H +F  +K ++ +I 
Sbjct: 816  LSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKID 875

Query: 2653 PLELQLEIERAISSNKEAATAALDMKMKNKLANK-GSQFNKELLLKGLLKPFPRNCIALM 2477
            P+ +QL IE+ I S+ ++A A LD +M N+L  K  S     LL  GLLKP  +NCI+LM
Sbjct: 876  PVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLM 935

Query: 2476 TITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLS 2297
            T +GAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLP F PWD A+R+GGY++DRFL+
Sbjct: 936  TTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLT 995

Query: 2296 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQF 2117
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGS++QF
Sbjct: 996  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQF 1055

Query: 2116 YYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGQKL---NSYIEKLPDGLEEKVKHFW 1946
            YYGEDGVDVH+TSF+  FK L  NQ+ I +  R G +L   NSYI +LP+ L+EK   F 
Sbjct: 1056 YYGEDGVDVHQTSFIAKFKELALNQDMIYK--RSGGQLGAFNSYISELPEALKEKADRF- 1112

Query: 1945 XXXXXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGE 1766
                               I   L + E D   L+ QK+  SLA  GEPVGVLA QSVGE
Sbjct: 1113 ----------LDDFSIMGRIASNLVKRE-DLYNLMKQKFLLSLAQPGEPVGVLAAQSVGE 1161

Query: 1765 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLL 1586
            PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS DIKTPIMTCP    +   DA  L 
Sbjct: 1162 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLA 1221

Query: 1585 AKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTL 1424
             K++K+TVAD++ESMEV+++P +I +  VC++YKL +KL       ++  +S ED E TL
Sbjct: 1222 DKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETL 1281

Query: 1423 KYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEEN-ASSARHXXXXXXXXXX 1247
            + VFLRELEDAI++H+ LLS+I+GI++F     S  S E +E+ A    H          
Sbjct: 1282 EVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSHREERDDDNDD 1341

Query: 1246 XXXXXXXDLGSDAQKRKQQ 1190
                   DLG DAQKRK Q
Sbjct: 1342 DDGERADDLGLDAQKRKLQ 1360



 Score =  285 bits (729), Expect = 1e-73
 Identities = 144/219 (65%), Positives = 172/219 (78%), Gaps = 3/219 (1%)
 Frame = -3

Query: 919  LHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTKK 740
            +HFEVHF+F NEPHILLA++AQKTAKKVY++N GKI+QCR+   +  E+ V++  K  K+
Sbjct: 1470 MHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVT--DCKESQVIYYGKDPKE 1527

Query: 739  Q---SQDNDSAYWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIR 569
            +     D      AL A G+DF TFW+MQD LDV  IY+NNI AML TYGVEAAR +IIR
Sbjct: 1528 RVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIR 1587

Query: 568  EVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIV 389
            E+  VF  YG+ +  RHLSLIAD+MTHTGGY+PMSR G I+ES+SPF KMSFETASKFIV
Sbjct: 1588 EINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIV 1647

Query: 388  EAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            EAA HG  D LETPS+RICLGLPVKMGTG FD+MQKL+I
Sbjct: 1648 EAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1459 bits (3778), Expect = 0.0
 Identities = 781/1326 (58%), Positives = 943/1326 (71%), Gaps = 43/1326 (3%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            P+P GLYD  +GPL+D +PCKSCG    HC GHCGHI+LVSP+YNPLLFN LH LLQR C
Sbjct: 45   PMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRIC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMSCTIDDL 4769
            F+C+HFRA + EVE+CVS+L+LI  GD++GAK +   S D S+  + +EGS  S +I   
Sbjct: 105  FFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI--- 161

Query: 4768 NMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD-I 4592
                +SE  K   W + Q  EAM+V+N  LK K  KC NC AKNP I+KP FG  HM+ +
Sbjct: 162  --VHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGM 219

Query: 4591 SSKRIRENYLNNGQR---FNLHYTGGSEENPSAEVVNATEPLGEAD----GLENSKAHGR 4433
               ++REN +   +    F+     G E+            + E D    G   S+ +G 
Sbjct: 220  LGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGA 279

Query: 4432 QGGDQSDVIE----QQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGK 4265
            +   +   +     +Q++ FS   LPS+V+ I + LWENE  LC+   DIQ Q     GK
Sbjct: 280  KARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GK 336

Query: 4264 VAGPSMFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSK 4085
              G SMFFL+++LVPPIKFR P KGGDSVMEHP TVLL KV+ +NI+LGNA+ N    SK
Sbjct: 337  KVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSK 396

Query: 4084 IISRL-MDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRS 3908
             + RL MDLQQSVN+LFDSKTA   G +DV SGICQLLEKKEG+FRQKMMGKRVNFACRS
Sbjct: 397  AVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRS 455

Query: 3907 VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRIST 3728
            VISPDPYLAVNEIGIPPYFALRLTYPERVTPWN VK+REAIING E HPGA  + D++ST
Sbjct: 456  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLST 515

Query: 3727 VKLPSSKKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHK 3548
             +LP S+K R +ISRKLPSSRGA+ Q G+N +YEFEGK+V RHLQDGD+VLVNRQPTLHK
Sbjct: 516  KRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHK 575

Query: 3547 PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQY 3368
            PSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY
Sbjct: 576  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQY 635

Query: 3367 IVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKV 3188
            + P+ G+ +R LIQDHIV AVLLT ++TFL+  EFNQLLY SGV +      SG   +KV
Sbjct: 636  VRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKV 695

Query: 3187 SVVDSEGVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQS 3008
             V  SE  +  I+PA+ KPKPLWTGKQVI+++L+H+T G  P TV    KIP  +F ++ 
Sbjct: 696  FVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRR 755

Query: 3007 RLVEYQSREEEEDRT----------------AENKFLIWKNELVRGVIDKAQFGKFGLVH 2876
               +  SREE + +                  E K LI++N+LVRGVIDKAQF  +GLVH
Sbjct: 756  NKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVH 815

Query: 2875 TIQELYGANKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDI-RRKXXXXXXXXXX 2699
            T+QELYG+N AGILLS  SRLFT+FLQ+HGFTCG+DDL+I+   DI R+K          
Sbjct: 816  TVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVT 875

Query: 2698 EAHCDFVKFK-RGEIGPLELQLEIERAISSNKEAATAALDMKMKNKL-ANKGSQFNKELL 2525
            EAH +    K   E  P ELQLEIER I  + E A  ALD KM + L  N       ELL
Sbjct: 876  EAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELL 935

Query: 2524 LKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPW 2345
             +GL+K    NCI+LMT +GAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLP F PW
Sbjct: 936  SEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPW 995

Query: 2344 DCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKV 2165
            D A+RAGG++SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+
Sbjct: 996  DWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1055

Query: 2164 CYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKL--RHGQKLNSYI 1991
             YD+TVRDADGSI+QF YGEDG+DVH+TSF+  F+AL  NQ+ + +KL  + G+  +S  
Sbjct: 1056 SYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDS-D 1114

Query: 1990 EKLPDGLEEKVKHFWXXXXXXXXXXXXXXXXXXEIVKQLKEEEV---DFLELVGQKYFSS 1820
            + LPDGL  K + F                   E +K+ + +++   DFL L+  K+ SS
Sbjct: 1115 KILPDGLRSKAEQF-----------------IREEIKKYQHQKIKPKDFLNLLKLKFLSS 1157

Query: 1819 LADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPI 1640
            LA  GEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS DI+TP+
Sbjct: 1158 LAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPV 1217

Query: 1639 MTCPFLGWKPKGDAQSLLAKVKKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKLKKH 1460
            MTCP    K K DA  L  K+KKITVAD++ESMEV++ P ++ N  +C +YKL + L K 
Sbjct: 1218 MTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKP 1277

Query: 1459 D------FVSSEDCEYTLKYVFLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETEE 1298
            D       ++ +DCE+ LK VFLRELEDAI++HL LLSKI+GI+ F    +   SNE +E
Sbjct: 1278 DKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDE 1337

Query: 1297 NASSAR 1280
            + S  R
Sbjct: 1338 DVSEGR 1343



 Score =  281 bits (720), Expect = 2e-72
 Identities = 139/218 (63%), Positives = 173/218 (79%), Gaps = 1/218 (0%)
 Frame = -3

Query: 922  GLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTK 743
            GL FEVHF+  NEPHILLAQ+A+KTAKKVY+++ GKIDQCR+   + +EN V +  +  K
Sbjct: 1450 GLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYYGEDPK 1507

Query: 742  KQSQDNDSA-YWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIRE 566
            K+   +D     AL   G+DFG FW+M+D +DV  +Y+N+I AMLNTYGVEAAR +IIRE
Sbjct: 1508 KRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIRE 1567

Query: 565  VKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVE 386
            +  VF  YG+ ++ RHL+LIAD+MTH+G Y+PMSR G I+ES+SPF KMSFETASKFIVE
Sbjct: 1568 ISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVE 1627

Query: 385  AASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            AA HGL D LETPSSRICLGLPVKMGTG FD+MQK++I
Sbjct: 1628 AAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1665


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score = 1436 bits (3716), Expect = 0.0
 Identities = 782/1378 (56%), Positives = 960/1378 (69%), Gaps = 65/1378 (4%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            P+P GLYDP +GPLD+ S CK+CG+R F C GH GHI+LV PVYNPLLFN+L+ LL+R C
Sbjct: 45   PLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRIC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPDYSTDQEQSEGSHMS-CT-ID 4775
            F+C HF+ASR EVEKCV +LELI KGD+I AK + +  P  S++ E S+ S+ S C+ + 
Sbjct: 105  FFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVT 164

Query: 4774 DLNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHMD 4595
                 D+    K   W + QF EA   + + LK +T KC NCKAKNP+ISKP+FG  HM+
Sbjct: 165  PRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMN 224

Query: 4594 -ISSKRIRENYLNNGQRFNLHYTGGSEEN----------PSAEVVNATEPLGEADGLENS 4448
             +    IR N +  G      ++GG EE           P     N T P G  D    +
Sbjct: 225  GMPHADIRANLIR-GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFP-GTQDTA--A 280

Query: 4447 KAHGRQGGDQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPG 4268
            + H +  G      ++Q+D FS   LPS V++IIE LWENE  LC+F  D+Q Q     G
Sbjct: 281  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF---G 337

Query: 4267 KVAGPSMFFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRS 4088
            K AG S+FFL +VLVPPIKFR P+KGGDSVMEHP TVLL KV+ +NI L NA++NQ   +
Sbjct: 338  KKAGHSIFFLGAVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA 397

Query: 4087 KII-SRLMDLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACR 3911
            KII +R M+LQQSVNVLFD K AAG  Q+D+ SGICQLLEKKEG+FRQK+MGKRVN+ACR
Sbjct: 398  KIIVTRWMNLQQSVNVLFDGKNAAG--QRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 455

Query: 3910 SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRIS 3731
            SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN VK+R++IING E HPGA  + D++S
Sbjct: 456  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 515

Query: 3730 TVKLPSSKKMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLH 3551
            T++LP +KKMR +I+RKL +SRGA+ Q G++ + EFEGK+V RHLQDGD+VLVNRQPTLH
Sbjct: 516  TMRLPPNKKMRISIARKLDTSRGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLH 575

Query: 3550 KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQ 3371
            KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNAN Q
Sbjct: 576  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 635

Query: 3370 YIVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKK 3191
            Y+ P+ GD +R LIQDHIV A LLT K+TFL   EF QLLY SGV ++G G  +G   ++
Sbjct: 636  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 695

Query: 3190 VSVVDSEGVVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYF--- 3020
            V +  SE  V  +LPA+WKP+PLWTGKQVITA+LNH+T G  P  V+  GK+P  +F   
Sbjct: 696  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 755

Query: 3019 ----------------LSQSRLV--------------------EYQSREEEEDRTAENKF 2948
                            LS++  +                    E +  + +E   +E K 
Sbjct: 756  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 815

Query: 2947 LIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSRLFTIFLQLHGFTCGID 2768
            LI+KN+LVRGVIDKAQF  +GLVHT+QELYG+N AG LLSALSRLFT+FLQ+HGFTCG+D
Sbjct: 816  LIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 875

Query: 2767 DLVILPHYDIRRK-XXXXXXXXXXEAHCDFVKFKRG-EIGPLELQLEIERAISSNKEAAT 2594
            DL+IL   +  RK             H + ++ + G EI P++L+ EIE+A+    +AA 
Sbjct: 876  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 935

Query: 2593 AALDMKMKNKL-ANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLG 2417
            A  DMKM ++L  +  S    ELL +GLLKP  +N I+LMT +GAKGS VNFQQISS+LG
Sbjct: 936  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 995

Query: 2416 QQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVD 2237
            QQELEGKRVPRMVSGKTLPSF PWD A RAGG++ DRFL+GLRPQEYYFHCMAGREGLVD
Sbjct: 996  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 1055

Query: 2236 TAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKA 2057
            TAVKTSRSGYLQRCLIKNLE LK+ YDY+VRDADGSI+QF YGEDGVDVH+TSF+  F A
Sbjct: 1056 TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1115

Query: 2056 LKNNQETICQKLRHGQ--KLNSYIEKLPDGLEEKVKHFWXXXXXXXXXXXXXXXXXXEIV 1883
            L  NQE I +K   GQ    N+YI +LPD L++  + F                   E+ 
Sbjct: 1116 LAANQEMIYKKC-SGQLDASNAYIMELPDALKDNAEKF------------ADKFLSNEMA 1162

Query: 1882 KQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVT 1703
            KQ      DFL+LV  K+  SLA  GEPVG+LA QSVGEPSTQMTLNTFHLAGRGEMNVT
Sbjct: 1163 KQ------DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1216

Query: 1702 LGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKVKKITVADMIESMEVNLLP 1523
            LGIPRLQEIL  AS DIKTP++TCP L  K + DA+ L  K+KKITVAD+++ + V +  
Sbjct: 1217 LGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRA 1276

Query: 1522 LSIHNHQVCQLYKLTVKLKK------HDFVSSEDCEYTLKYVFLRELEDAIESHLSLLSK 1361
             + H+ Q C +Y LT++L K      +  ++ ED E  L+ VF+RELED I++HL LLSK
Sbjct: 1277 FTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSK 1336

Query: 1360 INGIQNFKSSLESEDSNETEENAS-SARHXXXXXXXXXXXXXXXXXDLGSDAQKRKQQ 1190
            INGI+N  S L  + SNET+++ S +                    DLG DA K+KQ+
Sbjct: 1337 INGIKNVASGLTQKASNETDQDGSGNVSQCRGDDDDADDADGEEAEDLGMDAHKQKQR 1394



 Score =  274 bits (701), Expect = 3e-70
 Identities = 131/218 (60%), Positives = 173/218 (79%), Gaps = 1/218 (0%)
 Frame = -3

Query: 922  GLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQTK 743
            G+HFE HF+F+NEP+ILLAQ+A+  AKKVY+++SGKIDQC++   + ++      + +T+
Sbjct: 1498 GMHFEAHFKFINEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCKESQVIYYGKDPKTR 1557

Query: 742  KQSQDNDSA-YWALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASIIRE 566
            +  +  +     AL   G+DF  FW +QD +DV  IY+NNI+AML TYGVEAAR +IIRE
Sbjct: 1558 EDIKPEEKEKVQALHTTGVDFHAFWRLQDFIDVRYIYSNNIQAMLETYGVEAARETIIRE 1617

Query: 565  VKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVE 386
            +K VFG YG+ ++ RHLSLIAD+MTH+GGY+PMSR G I+ES+SPF KM+FETASKFIVE
Sbjct: 1618 IKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVE 1677

Query: 385  AASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            AAS+G  D L+TPS+RICLGLPVKMGTG FD+MQKL++
Sbjct: 1678 AASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLEV 1715


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1431 bits (3705), Expect = 0.0
 Identities = 769/1342 (57%), Positives = 946/1342 (70%), Gaps = 29/1342 (2%)
 Frame = -3

Query: 5128 PVPSGLYDPAMGPLDDDSPCKSCGRRSFHCSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 4949
            PV  GLYDPA+GPLDD S CKSCG+ S HC GH GHIELVSPVYNPL+FN+L ++LQRTC
Sbjct: 45   PVSGGLYDPALGPLDDKSLCKSCGQGSKHCPGHFGHIELVSPVYNPLMFNILSSILQRTC 104

Query: 4948 FYCFHFRASRAEVEKCVSELELIAKGDVIGAKMMGVVSPD---YSTDQEQSEGSHMSCTI 4778
            F C HF ASR EVE   S+ ELI KGD+I AK +  +  D   +S D ++S+G      +
Sbjct: 105  FSCHHFHASRKEVEMRTSQFELIMKGDIIRAKSLDSIISDESNHSGDGDESQG------V 158

Query: 4777 DDLNMQDHSEYNKRPSWDNFQFTEAMAVINRILKTKTEKCSNCKAKNPKISKPSFGRFHM 4598
            + L            +W + QF+EAM+V+ + L  K +KC NC   NP+ISKP+FG FHM
Sbjct: 159  EQLG----------ENWSSLQFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHM 208

Query: 4597 DI-SSKRIRENYLN--NGQRFNLHYTGGSEENPSAEVVNATEPLGEADGLENSKAHGRQG 4427
            ++ S    R N +     +  N   + G  E    E + +T           +K   R+ 
Sbjct: 209  NVLSDDEARANTMRALESETINDDMSLGGGETTEEEDITSTG---------TAKRDKRKK 259

Query: 4426 GDQSDVIEQQRDSFSVANLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGKVAGPSM 4247
            G  S  +  Q +  S + LPSQV+ I+E LWENEA LC++  DIQ Q     GK AG SM
Sbjct: 260  GKLSSKLAAQ-NKLSGSLLPSQVKGILELLWENEARLCSYISDIQDQGF---GKKAGHSM 315

Query: 4246 FFLDSVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVIHSNIALGNAHINQAGRSKIISRLM 4067
            FFL+++ VPPIKFRPP KGGD VMEHP TVLL KV+  NI+LG+AHIN+   SK++SR M
Sbjct: 316  FFLENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSKVLSRWM 375

Query: 4066 DLQQSVNVLFDSKTAAGPGQKDVGSGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPY 3887
            DLQQSVN+LFD+KT+   GQ +V +GICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPY
Sbjct: 376  DLQQSVNLLFDNKTS---GQGEVAAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPY 432

Query: 3886 LAVNEIGIPPYFALRLTYPERVTPWNAVKMREAIINGPENHPGAVSFADRISTVKLPSSK 3707
            LAVNEIGIPPYFALRL+YPERVTPWN   +R AI+NGP++HPGA  + D+ +TVKLP + 
Sbjct: 433  LAVNEIGIPPYFALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNG 492

Query: 3706 KMRTAISRKLPSSRGAVTQSGRNDEYEFEGKVVNRHLQDGDIVLVNRQPTLHKPSIMAHV 3527
            K+ + ISRKLPSSRG +   G+  + EFEGK+V RHL+DGD+VLVNRQPTLHKPSIMAHV
Sbjct: 493  KLLSFISRKLPSSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHV 552

Query: 3526 VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGD 3347
            VRVLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT GD
Sbjct: 553  VRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGD 612

Query: 3346 TVRGLIQDHIVGAVLLTMKNTFLTLHEFNQLLYGSGVFAAGPGPTSGNHSKKVSVVDSEG 3167
             +R LIQDHIV A LLT K+TF+T   F QLLY SGV   G G  SG H +KV + +SE 
Sbjct: 613  PIRALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEF 672

Query: 3166 VVQTILPAVWKPKPLWTGKQVITALLNHLTNGCAPCTVKNKGKIPYAYFLSQSRLVEYQS 2987
             +    PA+WKP+PLWTGKQVI+ALL ++T    P TV+   KIP  +F +Q R  +  +
Sbjct: 673  EMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRHT 732

Query: 2986 REEEEDRTA---ENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSR 2816
            R++  ++     E+K LI+KN+LVRGV+DKAQFG +G++HT+QELYG+  AG LLSALSR
Sbjct: 733  RDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSR 792

Query: 2815 LFTIFLQLHGFTCGIDDLVILPHYDIRR-KXXXXXXXXXXEAHCDFVKFKRGE-IGPLEL 2642
            LFT FLQ+HGFTCG+DDL+I    D+ R              H +F+     + I P+ L
Sbjct: 793  LFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITL 852

Query: 2641 QLEIERAISSNKEAATAALDMKMKNKLANK-GSQFNKELLLKGLLKPFPRNCIALMTITG 2465
            QL IE+ I SN EAA   LD KM + L ++  S   K+LL  G+LKP  +NCI+LMT +G
Sbjct: 853  QLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSG 912

Query: 2464 AKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPSFPPWDCASRAGGYVSDRFLSGLRP 2285
            AKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLP F PWDC+ RAGG++ DRFL+GL P
Sbjct: 913  AKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHP 972

Query: 2284 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 2105
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGE
Sbjct: 973  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGE 1032

Query: 2104 DGVDVHRTSFLKNFKALKNNQETI----CQKLRHGQKLNSYIEKLPDGLEEKVKHFWXXX 1937
            DGVDVH TSF+  F+AL  N+E +    C++L    + + YI KLPD L+EK ++F+   
Sbjct: 1033 DGVDVHHTSFINKFEALSTNKELVYGNCCRQL---DRSSPYINKLPDALKEKAENFFRDS 1089

Query: 1936 XXXXXXXXXXXXXXXEIVKQLKEEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPST 1757
                             +  LK  E  FL+L+  KY S LA  GE VGVLA QSVGEP+T
Sbjct: 1090 LKQRN------------LGSLKRAE--FLKLMEHKYVSCLAQPGESVGVLASQSVGEPAT 1135

Query: 1756 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDDIKTPIMTCPFLGWKPKGDAQSLLAKV 1577
            QMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+ DIKTP MTCP    K   +A  L  K+
Sbjct: 1136 QMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKSMEEAICLADKL 1195

Query: 1576 KKITVADMIESMEVNLLPLSIHNHQVCQLYKLTVKL------KKHDFVSSEDCEYTLKYV 1415
            KKITVAD+I+SM+V+++P+S+   QVC +YKL +KL       K+  ++ ED E TL+  
Sbjct: 1196 KKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRIS 1255

Query: 1414 FLRELEDAIESHLSLLSKINGIQNFKSSLESEDSNETE-------ENASSARHXXXXXXX 1256
            F+RELEDAIE+H++LLSKI+GI+ FK+  +S  SN +E       E+ +  +        
Sbjct: 1256 FVRELEDAIENHMALLSKISGIKKFKTDPQSH-SNSSEDAHGNGSESETKGKSNDDDDDD 1314

Query: 1255 XXXXXXXXXXDLGSDAQKRKQQ 1190
                      DLGSDAQKRK+Q
Sbjct: 1315 DVVEDTEGYEDLGSDAQKRKRQ 1336



 Score =  266 bits (681), Expect = 5e-68
 Identities = 128/221 (57%), Positives = 174/221 (78%), Gaps = 3/221 (1%)
 Frame = -3

Query: 925  EGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVENSGKIDQCRMIKYEVTENTVMWDEKQT 746
            +G+HF++HF+F  EP ILLA++A ++AKKV ++NSG++ +C+ +  +  E+ VM+  + +
Sbjct: 1419 KGMHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCK--ESGVMYYGEDS 1476

Query: 745  KKQSQDNDSAYW---ALKAAGIDFGTFWEMQDDLDVSRIYTNNIRAMLNTYGVEAARASI 575
            +K+     S      AL+ +G+ F TFWE+QDDLDV  IY+NN+ AMLN YGVEAAR +I
Sbjct: 1477 RKRDDIPASVKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETI 1536

Query: 574  IREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKF 395
            IREV+ VF  YG+ ++ RHL+LIAD+MTH+GGY+PM+R+GSI++  SPF+KM FETASKF
Sbjct: 1537 IREVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKF 1596

Query: 394  IVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI 272
            IVEAA HG  D LETPSSRICLGLPVKMGTGC D++QKL+I
Sbjct: 1597 IVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLEI 1637