BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00007884
         (597 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   260   2e-67
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,...   240   2e-61

>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum tuberosum]
          Length = 421

 Score =  260 bits (665), Expect = 2e-67
 Identities = 129/179 (72%), Positives = 148/179 (82%), Gaps = 1/179 (0%)
 Frame = +2

Query: 62  MAAWSCSNHSTASLFPYPSK*STKPHFHYAILYCPKYCSFLDPIHALAIQGVTEAVTIEG 241
           MAAWSCSNHS ASLFPYPSK STKP FHY+ILYCPK CSFLDPIHAL I+   EA TIEG
Sbjct: 1   MAAWSCSNHSPASLFPYPSKLSTKPFFHYSILYCPKNCSFLDPIHALTIEAANEAFTIEG 60

Query: 242 KSLVLDTNIEESSSNVEMINEEIELAL-XXXXXXXXXXCYSECMDMDKGDKILVSKSVKT 418
            SLV DT+ EES + VEM +E+IELAL           CYSEC++M+KGD+IL SK +KT
Sbjct: 61  SSLVFDTDFEESINKVEMFDEKIELALRRKNRRKRRRCCYSECLEMEKGDRILNSKPLKT 120

Query: 419 GFYLTHKEESEYSWYLKEEARIEIMRKMVEETSEIELNPNQLAKAAGMSRRRLDKLLVN 595
           GFYLTH+EE++YSWYLKEEARIEI+RKMVEETSEI+L+  QLAKAAGMS +RLDKLL+N
Sbjct: 121 GFYLTHEEEAKYSWYLKEEARIEILRKMVEETSEIDLSSKQLAKAAGMSTQRLDKLLIN 179


>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum lycopersicum]
          Length = 442

 Score =  240 bits (612), Expect = 2e-61
 Identities = 127/200 (63%), Positives = 143/200 (71%), Gaps = 22/200 (11%)
 Frame = +2

Query: 62  MAAWSCSNHSTASLFPYPSK*STKPHFHYAILYCPKYCSFLDPIHALAIQGVTEAVTIEG 241
           MAAWSCSNHS ASLFPYPSK ST+P F Y+ILYCPK CSFLDPIHAL I+   EA TIEG
Sbjct: 1   MAAWSCSNHSPASLFPYPSKLSTQPFFAYSILYCPKNCSFLDPIHALTIEAANEAFTIEG 60

Query: 242 KSLVLDTNIEESSSNVEMINEEIELAL-XXXXXXXXXXCYSECMDMDKGDKILVSKSVKT 418
            SLV DT+ EESS  VEM +E+IELAL           CYSEC++M+K D I   K +KT
Sbjct: 61  SSLVFDTDFEESSDKVEMFDEKIELALRRKKRRKRRRCCYSECLEMEKEDNIFNLKPLKT 120

Query: 419 GFYLTHKEESEYSWYLK---------------------EEARIEIMRKMVEETSEIELNP 535
           GFYLTHKEE++YSWYLK                     EEARIEI+RKMVEETSEI+L+ 
Sbjct: 121 GFYLTHKEEAKYSWYLKVNNNVYHRELDAGAESGWVKREEARIEILRKMVEETSEIDLSS 180

Query: 536 NQLAKAAGMSRRRLDKLLVN 595
            QLAKAAGMS RRLDKLL+N
Sbjct: 181 KQLAKAAGMSTRRLDKLLIN 200