BLASTX nr result
ID: Atropa21_contig00007856
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00007856 (1532 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s... 760 0.0 ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s... 754 0.0 ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III s... 614 e-173 ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III s... 610 e-172 ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par... 551 e-154 ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr... 548 e-153 ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s... 547 e-153 ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par... 546 e-153 gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor... 546 e-152 ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s... 544 e-152 ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s... 536 e-150 ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put... 535 e-149 gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ... 533 e-148 gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ... 533 e-148 gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ... 533 e-148 gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ... 533 e-148 gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ... 518 e-144 gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ... 518 e-144 ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III s... 510 e-142 dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis... 509 e-141 >ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X2 [Solanum tuberosum] Length = 1153 Score = 760 bits (1963), Expect = 0.0 Identities = 387/439 (88%), Positives = 399/439 (90%) Frame = -3 Query: 1317 MGYDSTMSNTADDLSHGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRT 1138 MGYDSTMSNT +D + GIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYF+RT Sbjct: 1 MGYDSTMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRT 60 Query: 1137 EIKKIVRANQEIRSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIY 958 EIKKIVRANQEIRS LDPNIYLRYRDVH+GEPSM+FDAVTEKLCPQKCRLSD TYAAPIY Sbjct: 61 EIKKIVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIY 120 Query: 957 VSIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV 778 V+IEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV Sbjct: 121 VTIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV 180 Query: 777 IKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMF 598 IKGTEKVILIQEQLSKNRIIIDTDKKG VQASV +YLELNMF Sbjct: 181 IKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMF 240 Query: 597 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESD 418 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFS+LLLPSIEECADLKLYTQHQALEFLESD Sbjct: 241 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESD 300 Query: 417 KMLKMPSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD 238 KMLKMPS+STGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD Sbjct: 301 KMLKMPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD 360 Query: 237 AMDDKDYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVK 58 AMDDKDYVGNKR FKTMNDEAR+T+DTLLARPSRSSRLDISQYIVK Sbjct: 361 AMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIVK 420 Query: 57 DSITVGLERTLSTGNWDVK 1 DSIT+GLERTLSTGNWDVK Sbjct: 421 DSITMGLERTLSTGNWDVK 439 >ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum lycopersicum] Length = 1183 Score = 754 bits (1947), Expect = 0.0 Identities = 383/439 (87%), Positives = 398/439 (90%) Frame = -3 Query: 1317 MGYDSTMSNTADDLSHGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRT 1138 MGYDSTMSNT +D + GIDKQHLAS IKNLVDKYQLVPEFLKVRGLVKQHLDSFNYF+RT Sbjct: 31 MGYDSTMSNTTEDSNQGIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRT 90 Query: 1137 EIKKIVRANQEIRSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIY 958 EIKKIVRANQEIRSTLDPNIYLRYRDVH+GEPSM+FDAVTEKLCPQKCRLSD TYAAPIY Sbjct: 91 EIKKIVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIY 150 Query: 957 VSIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV 778 V+I+YTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV Sbjct: 151 VTIDYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV 210 Query: 777 IKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMF 598 IKGTEKVILIQEQLSKNRIIIDTDKKG VQASV +YLELNMF Sbjct: 211 IKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMF 270 Query: 597 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESD 418 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFS+LLLPSIEECADLKLYTQ QALEFLESD Sbjct: 271 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESD 330 Query: 417 KMLKMPSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD 238 KMLKMPS+STGP+EKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD Sbjct: 331 KMLKMPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD 390 Query: 237 AMDDKDYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVK 58 AMDDKDYVGNKR FKTMNDEAR+T+DTLLARPSRSSRLDISQYI+K Sbjct: 391 AMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIIK 450 Query: 57 DSITVGLERTLSTGNWDVK 1 DSIT+GLERTLSTGNWDVK Sbjct: 451 DSITMGLERTLSTGNWDVK 469 >ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum lycopersicum] Length = 1149 Score = 614 bits (1584), Expect = e-173 Identities = 314/440 (71%), Positives = 365/440 (82%), Gaps = 1/440 (0%) Frame = -3 Query: 1317 MGYDSTMSNTADDLSHGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRT 1138 M D+TMS+ ++L++GIDKQ+LASPIKN VDKYQL+PEFLKVRGLVKQHL SFNY ++T Sbjct: 3 MDCDATMSSPRNNLNNGIDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKT 62 Query: 1137 EIKKIVRANQEIRSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIY 958 +I+KIVRAN EIRST DPNI+LRYRDV +GEPSM +D V EKL PQKCRL+DLTYAAPI+ Sbjct: 63 DIRKIVRANHEIRSTRDPNIFLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIF 122 Query: 957 VSIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFV 778 V+++YT +GQ S++T+K+V+IGRMPIMLRS CVLY KDE++LA+LGECPLDPGGYFV Sbjct: 123 VTVDYTMIRNGQISMATQKDVVIGRMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFV 182 Query: 777 IKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMF 598 + G EKVILIQEQLSKNRIIIDTD+KGCVQASV +YLELNMF Sbjct: 183 VNGREKVILIQEQLSKNRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMF 242 Query: 597 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESD 418 KTKVPIMVVMKAMGMESDQEVVQMIGRDPR+S+LLLPSIEECADLKLYTQHQALEFLE+D Sbjct: 243 KTKVPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLEND 302 Query: 417 KMLKMPSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKD 238 KM +MPS+STGPVEKGARALSILRD+FLA+VPV+QHNFRKKCIYVAVMMRRMMEAILNKD Sbjct: 303 KMFRMPSYSTGPVEKGARALSILRDMFLAHVPVNQHNFRKKCIYVAVMMRRMMEAILNKD 362 Query: 237 AMDDKDYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVK 58 AMDDKDYVGNKR FK+MNDEAR+ D ++PS D+ ++ + Sbjct: 363 AMDDKDYVGNKRLELSGQLLSLLFEDLFKSMNDEARREFDA-YSKPS-----DLLYHVKR 416 Query: 57 DS-ITVGLERTLSTGNWDVK 1 + ITV L+R LSTGNWD+K Sbjct: 417 SNRITVELQRALSTGNWDIK 436 >ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum tuberosum] Length = 1151 Score = 610 bits (1574), Expect = e-172 Identities = 320/442 (72%), Positives = 360/442 (81%), Gaps = 3/442 (0%) Frame = -3 Query: 1317 MGYDSTMSNTADDLSHGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRT 1138 M DSTMS+ +++L++GIDKQ+LASPIKN VDKYQL+PEFLKVRGLVKQHL SFNY ++T Sbjct: 3 MDCDSTMSSPSNNLNNGIDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKT 62 Query: 1137 EIKKIVRANQEIRS-TLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPI 961 +IKKIVRAN EIRS T DPNIYLRYRDV +GEPSM +D V EKL PQKCRL+DLTYAAPI Sbjct: 63 DIKKIVRANHEIRSSTRDPNIYLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPI 122 Query: 960 YVSIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYF 781 +V+++YT +GQ S+ T+K+V+I RMPIMLRS CVLY KDE++LA+LGECPLDPGGYF Sbjct: 123 FVTVDYTMTRNGQISMLTQKDVVIARMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYF 182 Query: 780 VIKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNM 601 ++ G EKVILIQEQLSKNRIIIDTD+KGCVQASV +YLELNM Sbjct: 183 IVNGREKVILIQEQLSKNRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNM 242 Query: 600 FKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLES 421 FKTKVPIMVVMKAMGMESDQEVVQMIGRDPR+S+LLLPSIEECADLKLYTQHQALEFLES Sbjct: 243 FKTKVPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLES 302 Query: 420 DKMLKMPSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNK 241 DKML MPS+ PVEKGARALSILRD+FLA+VPVHQHNFRKKCIYVAVMMRR+MEAILNK Sbjct: 303 DKMLTMPSYYNAPVEKGARALSILRDMFLAHVPVHQHNFRKKCIYVAVMMRRVMEAILNK 362 Query: 240 DAMDDKDYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIV 61 DAMDDKDYVGNKR FKTMNDE R+ D S+SS L Y V Sbjct: 363 DAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEVRREFDA----SSKSSDL---LYHV 415 Query: 60 KDS--ITVGLERTLSTGNWDVK 1 K S ITV L+RTLSTGNWD+K Sbjct: 416 KKSNRITVELQRTLSTGNWDIK 437 >ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] Length = 1034 Score = 551 bits (1419), Expect = e-154 Identities = 284/427 (66%), Positives = 332/427 (77%), Gaps = 1/427 (0%) Frame = -3 Query: 1278 LSHGIDKQ-HLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEI 1102 + H IDKQ H A+P+K+ VDK+QL+PEFLK RGLVKQHLDSFNYFI IKKIVRAN I Sbjct: 15 VDHLIDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRI 74 Query: 1101 RSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQ 922 ST+DP++YLR+ DV +G+PSM+ DA++E++ P CRLSD TYAAPI V+IEY +GSHG+ Sbjct: 75 VSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAPILVNIEYISGSHGR 134 Query: 921 TSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQE 742 K +V+IGRMPIMLRS CCVLYGK+E ELARLGECPLDPGGYFV+KGTEKVILIQE Sbjct: 135 KEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQE 194 Query: 741 QLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKA 562 QLSKNRIIID DKKG + ASV +YL LN F K+PIMVVMKA Sbjct: 195 QLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKA 254 Query: 561 MGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGP 382 MGMESDQEVVQM+GRDPR+S+LLLPSIEECA +YTQ QALE+LE+ M+K ++S+ Sbjct: 255 MGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEA--MVKRSTYSSSS 312 Query: 381 VEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKR 202 EK RAL+ILRD+F+ANVPV ++NFR KCIYVAVM+RRMMEA+LNKDAMDDKDYVGNKR Sbjct: 313 TEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKR 372 Query: 201 XXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITVGLERTLS 22 FKTM E +KT DTLL + +RSSR D SQYIV+DSIT GLER LS Sbjct: 373 LELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERALS 432 Query: 21 TGNWDVK 1 TGNWDVK Sbjct: 433 TGNWDVK 439 >ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina] gi|557534507|gb|ESR45625.1| hypothetical protein CICLE_v10000078mg [Citrus clementina] Length = 1149 Score = 548 bits (1413), Expect = e-153 Identities = 278/421 (66%), Positives = 333/421 (79%) Frame = -3 Query: 1263 DKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLDP 1084 DKQ LA+P+K++VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T I+KIVRAN I S +DP Sbjct: 17 DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76 Query: 1083 NIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVSTK 904 +I+LR++DV +G+PSM D V+EKL P CRLSD+TYAAPI V+IEY GSH + + K Sbjct: 77 SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136 Query: 903 KNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 724 +V+IGR+PIMLRS CVLYGKDE ELARLGECPLDPGGYF+IKGTEKV+LIQEQLSKNR Sbjct: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196 Query: 723 IIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMESD 544 +IIDTDKKG + ASV +YL LN F K+PIMVVMKAMGMESD Sbjct: 197 VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256 Query: 543 QEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPVEKGAR 364 QEVVQM+GRDPR+S+LLLPSIEECA+L +YTQ +ALE+LE +K ++ + P ++ R Sbjct: 257 QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG--KVKRSTFGSPPNDREGR 314 Query: 363 ALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXXXX 184 A SILRD+FLANVPVH +NFR KC YVAVM+RRM+EA+LNKDAMDDKDYVGNKR Sbjct: 315 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374 Query: 183 XXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITVGLERTLSTGNWDV 4 FKTM E +KTVD +L++PSRSSR D+SQ+IV+DSITVGLERTLSTGN+DV Sbjct: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434 Query: 3 K 1 K Sbjct: 435 K 435 >ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X2 [Citrus sinensis] Length = 1149 Score = 547 bits (1409), Expect = e-153 Identities = 277/421 (65%), Positives = 333/421 (79%) Frame = -3 Query: 1263 DKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLDP 1084 DKQ LA+P+K++VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T I+KIVRAN I S +DP Sbjct: 17 DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76 Query: 1083 NIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVSTK 904 +I+LR++DV +G+PSM D V+EKL P CRLSD+TYAAPI V+IEY GSH + + K Sbjct: 77 SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136 Query: 903 KNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 724 +V+IGR+PIMLRS CVLYGKDE ELARLGECPLDPGGYF+IKGTEKV+LIQEQLSKNR Sbjct: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196 Query: 723 IIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMESD 544 +IIDTDKKG + ASV +YL LN F K+PIMVVMKAMG+ESD Sbjct: 197 VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256 Query: 543 QEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPVEKGAR 364 QEVVQM+GRDPR+S+LLLPSIEECA+L +YTQ +ALE+LE +K ++ + P ++ R Sbjct: 257 QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG--KVKRSTFGSPPNDREGR 314 Query: 363 ALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXXXX 184 A SILRD+FLANVPVH +NFR KC YVAVM+RRM+EA+LNKDAMDDKDYVGNKR Sbjct: 315 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374 Query: 183 XXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITVGLERTLSTGNWDV 4 FKTM E +KTVD +L++PSRSSR D+SQ+IV+DSITVGLERTLSTGN+DV Sbjct: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434 Query: 3 K 1 K Sbjct: 435 K 435 >ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] Length = 1035 Score = 546 bits (1408), Expect = e-153 Identities = 284/428 (66%), Positives = 332/428 (77%), Gaps = 2/428 (0%) Frame = -3 Query: 1278 LSHGIDKQ-HLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEI 1102 + H IDKQ H A+P+K+ VDK+QL+PEFLK RGLVKQHLDSFNYFI IKKIVRAN I Sbjct: 15 VDHLIDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRI 74 Query: 1101 RSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQ 922 ST+DP++YLR+ DV +G+PSM+ DA++E++ P CRLSD TYAAPI V+IEY +GSHG+ Sbjct: 75 VSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAPILVNIEYISGSHGR 134 Query: 921 TSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQE 742 K +V+IGRMPIMLRS CCVLYGK+E ELARLGECPLDPGGYFV+KGTEKVILIQE Sbjct: 135 KEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQE 194 Query: 741 QLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKA 562 QLSKNRIIID DKKG + ASV +YL LN F K+PIMVVMKA Sbjct: 195 QLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKA 254 Query: 561 MGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGP 382 MGMESDQEVVQM+GRDPR+S+LLLPSIEECA +YTQ QALE+LE+ M+K ++S+ Sbjct: 255 MGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEA--MVKRSTYSSSS 312 Query: 381 VEKGA-RALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNK 205 EK RAL+ILRD+F+ANVPV ++NFR KCIYVAVM+RRMMEA+LNKDAMDDKDYVGNK Sbjct: 313 TEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 372 Query: 204 RXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITVGLERTL 25 R FKTM E +KT DTLL + +RSSR D SQYIV+DSIT GLER L Sbjct: 373 RLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERAL 432 Query: 24 STGNWDVK 1 STGNWDVK Sbjct: 433 STGNWDVK 440 >gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis] Length = 786 Score = 546 bits (1406), Expect = e-152 Identities = 282/427 (66%), Positives = 328/427 (76%), Gaps = 1/427 (0%) Frame = -3 Query: 1278 LSHGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIR 1099 LS IDKQ LA+PIK VDKYQL+PEFLKVRGLVKQHLDSFNYF+ TEIKKIVR+N I Sbjct: 63 LSPAIDKQFLAAPIKRAVDKYQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVRSNSRIV 122 Query: 1098 STLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQT 919 S++DP+IYLR+ DV +GEPS+ D V+EKL PQ CRLSDLTYAAPI +EY GSH Q Sbjct: 123 SSVDPSIYLRFTDVRIGEPSVTMDGVSEKLDPQTCRLSDLTYAAPIKADVEYIHGSHNQK 182 Query: 918 SVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQ 739 S K +V+IGRMPIMLRS CCVLYGKDE ELA+LGECPLDPGGYF++KGTEKV+LIQEQ Sbjct: 183 IQSGKTDVVIGRMPIMLRSCCCVLYGKDEAELAKLGECPLDPGGYFIVKGTEKVLLIQEQ 242 Query: 738 LSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKT-KVPIMVVMKA 562 LSKNRIIIDTDKKG + ASV +YL LN F T K+PIMVV+KA Sbjct: 243 LSKNRIIIDTDKKGNINASVTSSSEAIKSKTVIQMEKEKLYLMLNQFSTKKIPIMVVIKA 302 Query: 561 MGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGP 382 MGMESDQEVVQM+GRDPR+S+LL+PS+EEC +YTQ QAL +LES +K P + + Sbjct: 303 MGMESDQEVVQMLGRDPRYSALLMPSLEECGKEGIYTQEQALGYLES--KVKKPMFPSAS 360 Query: 381 VEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKR 202 EK R ++IL+D+FLANV VH +NFR KCIYVAVM+RR+M+AILNKDAMDDKDYVGNKR Sbjct: 361 SEKDDRVMAILKDVFLANVRVHGNNFRPKCIYVAVMIRRIMDAILNKDAMDDKDYVGNKR 420 Query: 201 XXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITVGLERTLS 22 FK+M E R+ VD +L++PSRSSR D SQYIV D ITVGLER+LS Sbjct: 421 LELSGQLISLLFEDLFKSMITEVRRAVDNILSKPSRSSRFDFSQYIVTDKITVGLERSLS 480 Query: 21 TGNWDVK 1 TGNWDVK Sbjct: 481 TGNWDVK 487 >ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis vinifera] Length = 1142 Score = 544 bits (1402), Expect = e-152 Identities = 281/425 (66%), Positives = 332/425 (78%), Gaps = 3/425 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 I K A P+K VDK+ L+PEFLKVRGLVKQHLDSFNYF++T+IKKIVRAN I S++D Sbjct: 6 IHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVD 65 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPS+ D ++EKL P CRLSD+TYAAPI V+IEY TGSH Q + Sbjct: 66 PSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTRVE 125 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +V+IGRMPIMLRS CCVLY KDE ELARLGECPLDPGGYFV+KGTEKVILIQEQLSKN Sbjct: 126 KNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKN 185 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIIDTDKKG + ASV I+L+LN F +K+PIM+VMKAMGMES Sbjct: 186 RIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGMES 245 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPVEKGA 367 DQEVVQM+GR+PR+S+LLLPS+EECA +YTQ QALEFLE K+ K+P ++ +EK Sbjct: 246 DQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLER-KVKKLPFYNPS-LEKEG 303 Query: 366 RALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXXX 187 R ++ILRD F+ANVPV Q+NFR KC+YVAVM+RRMM+AILNKDAMDDKDYVGNKR Sbjct: 304 RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 363 Query: 186 XXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQ---YIVKDSITVGLERTLSTG 16 FKTM E +KT+D +LA+PSRSSR D SQ +IV+DSITVGLERTLSTG Sbjct: 364 QLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTG 423 Query: 15 NWDVK 1 NWDVK Sbjct: 424 NWDVK 428 >ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis sativus] Length = 1158 Score = 536 bits (1381), Expect = e-150 Identities = 278/434 (64%), Positives = 331/434 (76%), Gaps = 1/434 (0%) Frame = -3 Query: 1299 MSNTADDLSHGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIV 1120 + + ++ + IDKQ + PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ TEIKKIV Sbjct: 15 LGDNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIV 74 Query: 1119 RANQEIRSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYT 940 +AN I S+ DP+IYLR+ DV +GEPS+ +AV+E + P CRLSDLTYAAPI V IEY Sbjct: 75 KANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYI 134 Query: 939 TGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEK 760 SH Q + KK+V+IGRMPIMLRS CCVL+GKDE ELARLGECPLDPGGYF+IKGTEK Sbjct: 135 EESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEK 194 Query: 759 VILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKT-KVP 583 V+LIQEQLSKNRIIIDTDKKG + ASV IYL+LN+F T K+P Sbjct: 195 VVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIP 254 Query: 582 IMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKM 403 IMVV+KAMGMES QEVVQM+GRDPR+ +LLLPSIEECA K+YTQ QALE+LE+ +K Sbjct: 255 IMVVLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLET--KVKK 312 Query: 402 PSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDK 223 +++ P EK RAL ILRD+FLANVPV+++NF KCIYVAVMMRRMM+AIL+KDAMDDK Sbjct: 313 FQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDK 372 Query: 222 DYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITV 43 DYVGNKR FKTM E +KT+D LL + SRSSR D SQ++ + I+ Sbjct: 373 DYVGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISF 432 Query: 42 GLERTLSTGNWDVK 1 GLERTLSTGNWDVK Sbjct: 433 GLERTLSTGNWDVK 446 >ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis] Length = 1139 Score = 535 bits (1377), Expect = e-149 Identities = 282/440 (64%), Positives = 330/440 (75%), Gaps = 1/440 (0%) Frame = -3 Query: 1317 MGYDSTMSNTADDLSHG-IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIR 1141 M DS++ N +L IDKQ L +PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ Sbjct: 4 MQTDSSIGNNEQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVN 63 Query: 1140 TEIKKIVRANQEIRSTLDPNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPI 961 IKKIVRAN I ST+DP IYLR++DV +G PS I D V+E+L P CRLSD TYAAPI Sbjct: 64 IGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPI 123 Query: 960 YVSIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYF 781 V++EY GSH Q + K +V+IGRMPIMLRS CVLYGKDE ELARLGECPLDPGGYF Sbjct: 124 LVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYF 183 Query: 780 VIKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNM 601 VIKGTEKVILIQEQLSKNRIIIDTDKKG + ASV +YL LN Sbjct: 184 VIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQ 243 Query: 600 FKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLES 421 F K+PIMVV+KAMGMESDQEVVQM+GRDPR+S+LLLPSIEECA L +YTQ +ALE+L+ Sbjct: 244 FVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLDG 303 Query: 420 DKMLKMPSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNK 241 K RAL+ILRD+FLANVPVH++NFR KC+YVAVM+RRMMEA+LNK Sbjct: 304 ---------------KENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNK 348 Query: 240 DAMDDKDYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIV 61 DAMDDKDYVGNKR FKTM E ++T+DT+L + +RSSR D++QYIV Sbjct: 349 DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIV 408 Query: 60 KDSITVGLERTLSTGNWDVK 1 +D+IT GLERTLSTGN+DVK Sbjct: 409 RDNITNGLERTLSTGNFDVK 428 >gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao] Length = 1034 Score = 533 bits (1372), Expect = e-148 Identities = 279/424 (65%), Positives = 328/424 (77%), Gaps = 2/424 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 +DKQ LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 24 VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPSM +AV+EK+ P CRLSD+TYAAPI+V+IEY GSHGQ + Sbjct: 84 PSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE 143 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +++IGRMPIMLRS CCVLYGKDE ELARLGECPLDPGGYFVIKG EKVILIQEQLSKN Sbjct: 144 KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKN 203 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG + ASV IYL LN F K+PIMVVMKAMGMES Sbjct: 204 RIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMES 263 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPV-EKG 370 DQEVVQM+GRDP ++++LLPSIEECA + +YTQ QALE+LE+ M TGP EK Sbjct: 264 DQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVM---YTGPASEKE 320 Query: 369 ARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXX 190 RALSILRD+FLANVPV +NFR KC+YVAVM+RRM+EAILNKDAMDDKDYVGNKR Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 189 XXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYI-VKDSITVGLERTLSTGN 13 FKT E +K +D +L++PSRSS LD SQ++ +++IT GLERTLSTGN Sbjct: 381 GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 440 Query: 12 WDVK 1 +D+K Sbjct: 441 FDIK 444 >gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao] Length = 1034 Score = 533 bits (1372), Expect = e-148 Identities = 279/424 (65%), Positives = 328/424 (77%), Gaps = 2/424 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 +DKQ LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 24 VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPSM +AV+EK+ P CRLSD+TYAAPI+V+IEY GSHGQ + Sbjct: 84 PSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE 143 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +++IGRMPIMLRS CCVLYGKDE ELARLGECPLDPGGYFVIKG EKVILIQEQLSKN Sbjct: 144 KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKN 203 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG + ASV IYL LN F K+PIMVVMKAMGMES Sbjct: 204 RIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMES 263 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPV-EKG 370 DQEVVQM+GRDP ++++LLPSIEECA + +YTQ QALE+LE+ M TGP EK Sbjct: 264 DQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVM---YTGPASEKE 320 Query: 369 ARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXX 190 RALSILRD+FLANVPV +NFR KC+YVAVM+RRM+EAILNKDAMDDKDYVGNKR Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 189 XXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYI-VKDSITVGLERTLSTGN 13 FKT E +K +D +L++PSRSS LD SQ++ +++IT GLERTLSTGN Sbjct: 381 GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 440 Query: 12 WDVK 1 +D+K Sbjct: 441 FDIK 444 >gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao] Length = 1011 Score = 533 bits (1372), Expect = e-148 Identities = 279/424 (65%), Positives = 328/424 (77%), Gaps = 2/424 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 +DKQ LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 24 VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPSM +AV+EK+ P CRLSD+TYAAPI+V+IEY GSHGQ + Sbjct: 84 PSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE 143 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +++IGRMPIMLRS CCVLYGKDE ELARLGECPLDPGGYFVIKG EKVILIQEQLSKN Sbjct: 144 KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKN 203 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG + ASV IYL LN F K+PIMVVMKAMGMES Sbjct: 204 RIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMES 263 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPV-EKG 370 DQEVVQM+GRDP ++++LLPSIEECA + +YTQ QALE+LE+ M TGP EK Sbjct: 264 DQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVM---YTGPASEKE 320 Query: 369 ARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXX 190 RALSILRD+FLANVPV +NFR KC+YVAVM+RRM+EAILNKDAMDDKDYVGNKR Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 189 XXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYI-VKDSITVGLERTLSTGN 13 FKT E +K +D +L++PSRSS LD SQ++ +++IT GLERTLSTGN Sbjct: 381 GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 440 Query: 12 WDVK 1 +D+K Sbjct: 441 FDIK 444 >gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao] Length = 1158 Score = 533 bits (1372), Expect = e-148 Identities = 279/424 (65%), Positives = 328/424 (77%), Gaps = 2/424 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 +DKQ LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 24 VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPSM +AV+EK+ P CRLSD+TYAAPI+V+IEY GSHGQ + Sbjct: 84 PSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE 143 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +++IGRMPIMLRS CCVLYGKDE ELARLGECPLDPGGYFVIKG EKVILIQEQLSKN Sbjct: 144 KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKN 203 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG + ASV IYL LN F K+PIMVVMKAMGMES Sbjct: 204 RIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMES 263 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPV-EKG 370 DQEVVQM+GRDP ++++LLPSIEECA + +YTQ QALE+LE+ M TGP EK Sbjct: 264 DQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVM---YTGPASEKE 320 Query: 369 ARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXX 190 RALSILRD+FLANVPV +NFR KC+YVAVM+RRM+EAILNKDAMDDKDYVGNKR Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 189 XXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYI-VKDSITVGLERTLSTGN 13 FKT E +K +D +L++PSRSS LD SQ++ +++IT GLERTLSTGN Sbjct: 381 GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 440 Query: 12 WDVK 1 +D+K Sbjct: 441 FDIK 444 >gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao] Length = 1006 Score = 518 bits (1335), Expect = e-144 Identities = 274/424 (64%), Positives = 323/424 (76%), Gaps = 2/424 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 +DKQ LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 24 VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPSM +AV+EK+ P CRLSD+TYAAPI+V+IEY GSHGQ + Sbjct: 84 PSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE 143 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +++IGRMPIMLRS CCVLYGKDE ELARLGECPLDPGGYFVIKG EK EQLSKN Sbjct: 144 KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQLSKN 198 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG + ASV IYL LN F K+PIMVVMKAMGMES Sbjct: 199 RIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMES 258 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPV-EKG 370 DQEVVQM+GRDP ++++LLPSIEECA + +YTQ QALE+LE+ M TGP EK Sbjct: 259 DQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVM---YTGPASEKE 315 Query: 369 ARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXX 190 RALSILRD+FLANVPV +NFR KC+YVAVM+RRM+EAILNKDAMDDKDYVGNKR Sbjct: 316 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 375 Query: 189 XXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYI-VKDSITVGLERTLSTGN 13 FKT E +K +D +L++PSRSS LD SQ++ +++IT GLERTLSTGN Sbjct: 376 GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 435 Query: 12 WDVK 1 +D+K Sbjct: 436 FDIK 439 >gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao] Length = 1153 Score = 518 bits (1335), Expect = e-144 Identities = 274/424 (64%), Positives = 323/424 (76%), Gaps = 2/424 (0%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 +DKQ LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 24 VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+IYLR++DV +GEPSM +AV+EK+ P CRLSD+TYAAPI+V+IEY GSHGQ + Sbjct: 84 PSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE 143 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 K +++IGRMPIMLRS CCVLYGKDE ELARLGECPLDPGGYFVIKG EK EQLSKN Sbjct: 144 KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQLSKN 198 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG + ASV IYL LN F K+PIMVVMKAMGMES Sbjct: 199 RIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMES 258 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPV-EKG 370 DQEVVQM+GRDP ++++LLPSIEECA + +YTQ QALE+LE+ M TGP EK Sbjct: 259 DQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVM---YTGPASEKE 315 Query: 369 ARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXX 190 RALSILRD+FLANVPV +NFR KC+YVAVM+RRM+EAILNKDAMDDKDYVGNKR Sbjct: 316 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 375 Query: 189 XXXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYI-VKDSITVGLERTLSTGN 13 FKT E +K +D +L++PSRSS LD SQ++ +++IT GLERTLSTGN Sbjct: 376 GQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGN 435 Query: 12 WDVK 1 +D+K Sbjct: 436 FDIK 439 >ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Fragaria vesca subsp. vesca] Length = 1163 Score = 510 bits (1314), Expect = e-142 Identities = 259/422 (61%), Positives = 315/422 (74%) Frame = -3 Query: 1266 IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLD 1087 IDK+ LA+PIK+ DK+ L+PEFLKVRGLVKQHLDSFNYF+ T IKKIVRAN I S +D Sbjct: 33 IDKELLAAPIKSAKDKFALIPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 92 Query: 1086 PNIYLRYRDVHVGEPSMIFDAVTEKLCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVST 907 P+I+LR+ +V++ PS+ D VT ++ P CRLSD+TY+API V +EY GSH Q ++T Sbjct: 93 PSIWLRFNNVYIDRPSLTTDGVTTEIAPHTCRLSDMTYSAPIRVDVEYVEGSHDQKMIAT 152 Query: 906 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 727 +K + IGR+PIMLRS CC LYGK E ELA LGECPLDPGGYF+IKG EKV+LIQEQLSKN Sbjct: 153 RKGIEIGRLPIMLRSCCCTLYGKTESELATLGECPLDPGGYFIIKGNEKVLLIQEQLSKN 212 Query: 726 RIIIDTDKKGCVQASVXXXXXXXXXXXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMES 547 RIIID DKKG V ASV IYLELN F K+PIMVVMKAMGM S Sbjct: 213 RIIIDMDKKGNVNASVTSSSETIKSKTIIQMEKQKIYLELNQFSKKIPIMVVMKAMGMTS 272 Query: 546 DQEVVQMIGRDPRFSSLLLPSIEECADLKLYTQHQALEFLESDKMLKMPSWSTGPVEKGA 367 DQEVVQM+GRDPR+ +LL+PSIEECA +YT+ QAL +LE +K + + +K + Sbjct: 273 DQEVVQMVGRDPRYGALLMPSIEECAKEGIYTKEQALLYLE--PKVKRSMFDSASSDKDS 330 Query: 366 RALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXXX 187 + +++LRDIF+ANVPV + NFR KCIYVAVM+RR+M+AILNKD MDDKDYVGNKR Sbjct: 331 KVMAVLRDIFIANVPVRRSNFRPKCIYVAVMLRRIMDAILNKDTMDDKDYVGNKRLELSG 390 Query: 186 XXXXXXXXXXFKTMNDEARKTVDTLLARPSRSSRLDISQYIVKDSITVGLERTLSTGNWD 7 FKTM E RKTVD +L +PSRSSR D++QYI KD I++GLERTLSTGN+D Sbjct: 391 QSISLLFEDLFKTMISEVRKTVDNILTKPSRSSRFDLAQYIRKDQISLGLERTLSTGNFD 450 Query: 6 VK 1 +K Sbjct: 451 LK 452 >dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana] Length = 1194 Score = 509 bits (1310), Expect = e-141 Identities = 276/460 (60%), Positives = 336/460 (73%), Gaps = 5/460 (1%) Frame = -3 Query: 1365 LIVSGFVLLEN*LAA--GMGYDSTMSNTADDLSHGIDKQHLASPIKNLVDKYQLVPEFLK 1192 + + GF + ++ +A MG D + +D H IDK+ L++PIK+ DK+QLVPEFLK Sbjct: 4 IFLHGFQITDSLIAKLRAMGLDQEDLDLTND-DHFIDKEKLSAPIKSTADKFQLVPEFLK 62 Query: 1191 VRGLVKQHLDSFNYFIRTEIKKIVRANQEIRSTLDPNIYLRYRDVHVGEPSMIFDAVTEK 1012 VRGLVKQHLDSFNYFI I KIV+AN I ST+DP+IYLR++ V VGEPS+I E Sbjct: 63 VRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINVNTVEN 122 Query: 1011 LCPQKCRLSDLTYAAPIYVSIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDE 832 + P CRL+D+TYAAPI+V+IEY GSHG + S K NVIIGRMPIMLRS CVL+GKDE Sbjct: 123 INPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDE 182 Query: 831 DELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVXXXXXXXXX 652 +ELARLGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIIID+DKKG + ASV Sbjct: 183 EELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKS 242 Query: 651 XXXXXXXXXXIYLELNMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSSLLLPSIEEC 472 IYL L+ F K+PI++V+KAMGMESDQE+VQM+GRDPRFS+ LLPSIEEC Sbjct: 243 KTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEEC 302 Query: 471 ADLKLYTQHQALEFLESDKMLKMPSWSTGPVEKGARALSILRDIFLANVPVHQHNFRKKC 292 + TQ QAL++LE+ +K S+ T P EK RALSILRD+FLA+VPV +NFR+KC Sbjct: 303 VSEGVNTQKQALDYLEA--KVKKISYGT-PPEKDGRALSILRDLFLAHVPVPDNNFRQKC 359 Query: 291 IYVAVMMRRMMEAILNKDAMDDKDYVGNKRXXXXXXXXXXXXXXXFKTMNDEARKTVDTL 112 YV VM+RRM+EA+LNKDAMDDKDYVGNKR FKTM EA K VD + Sbjct: 360 FYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHI 419 Query: 111 LARPSRSSRLDISQYIVKD---SITVGLERTLSTGNWDVK 1 L +P R+SR D SQ + KD SI++GLERTLSTGN+D+K Sbjct: 420 LNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIK 459