BLASTX nr result
ID: Atropa21_contig00007758
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00007758
(861 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006340804.1| PREDICTED: ribonuclease E/G-like protein, ch... 338 2e-90
ref|XP_006340803.1| PREDICTED: ribonuclease E/G-like protein, ch... 338 2e-90
ref|NP_001234480.1| ribonuclease E [Solanum lycopersicum] gi|166... 338 2e-90
gb|EXB34463.1| Ribonuclease E [Morus notabilis] 67 1e-08
emb|CBI28473.3| unnamed protein product [Vitis vinifera] 62 3e-07
emb|CAB76425.1| endoribonuclease E [Arabidopsis thaliana] 59 2e-06
ref|NP_850989.1| RNAse E/G-like protein [Arabidopsis thaliana] g... 59 2e-06
ref|NP_850988.1| RNAse E/G-like protein [Arabidopsis thaliana] g... 59 2e-06
ref|NP_850987.1| RNAse E/G-like protein [Arabidopsis thaliana] g... 59 2e-06
emb|CAD48421.1| putative endoribonuclease E [Arabidopsis thaliana] 59 2e-06
ref|NP_001189510.1| RNAse E/G-like protein [Arabidopsis thaliana... 59 2e-06
ref|XP_002883633.1| glycoside hydrolase starch-binding domain-co... 59 2e-06
ref|NP_178508.2| RNAse E/G-like protein [Arabidopsis thaliana] g... 59 2e-06
ref|XP_006418596.1| hypothetical protein EUTSA_v10002385mg [Eutr... 58 5e-06
ref|XP_006418595.1| hypothetical protein EUTSA_v10002385mg [Eutr... 58 5e-06
>ref|XP_006340804.1| PREDICTED: ribonuclease E/G-like protein, chloroplastic-like isoform
X2 [Solanum tuberosum]
Length = 967
Score = 338 bits (866), Expect = 2e-90
Identities = 201/360 (55%), Positives = 231/360 (64%), Gaps = 74/360 (20%)
Frame = -2
Query: 860 LLHHLAEADASGDVICEDKIVEGVDSENLESGFLNQSTLSE-----YEVNANDASSGTLC 696
LLHHLAE+DASGDVIC+DKIVEG+D ENLESGFLNQSTLSE Y+VNANDASSGTLC
Sbjct: 162 LLHHLAESDASGDVICDDKIVEGLDCENLESGFLNQSTLSETLWSKYQVNANDASSGTLC 221
Query: 695 ARYAYMEEPWLLQACTSSPSFDAEMAPDNGEVERSDNEDEA------------QPSFNDQ 552
A YA++EEPWLLQACTSSPSFDAEMAP + EVE+SDN+DEA Q S ++Q
Sbjct: 222 ATYAHVEEPWLLQACTSSPSFDAEMAPYDCEVEQSDNKDEAQPPFSDQLEQLAQTSSSNQ 281
Query: 551 LEQL-------------------------------AQPSTSNQHEQIPEKLLAVD----Q 477
EQ+ Q ++E++ E LL Q
Sbjct: 282 HEQIPEKLLDVDQCDAISKEDSFTTIILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQ 341
Query: 476 CDEI----------SKENSFAAI---------ILINREPFIFLPFCHDSREKIINGSAVD 354
CD + +F I I NREPFIF PFCHDSR K+ING+AVD
Sbjct: 342 CDSVYLGVVTKLAPHMGGAFVNIGTSRPSFMDIKPNREPFIFPPFCHDSRAKVINGAAVD 401
Query: 353 MLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMECVDNEFGEHESGD---ISEVLAGNCN 183
MLEENL LPR KSTL ESME +D+EFG+HESGD I EVLA NCN
Sbjct: 402 MLEENLGLPRYKSTLEEVEADEIDDADIEDESMEYMDSEFGDHESGDTCDILEVLAENCN 461
Query: 182 GNVTEHGIETHSGKYPEESSRIGYQGKDPTIEHAVNGNKVSQRDKSKWVHVRKCTKIIVQ 3
G+VTEHG++THS KYPEESS IGY+G++PTIEHA+NG KVSQRD SKWV VRK TKIIVQ
Sbjct: 462 GSVTEHGLDTHSEKYPEESSGIGYRGQNPTIEHAMNGKKVSQRDDSKWVQVRKGTKIIVQ 521
>ref|XP_006340803.1| PREDICTED: ribonuclease E/G-like protein, chloroplastic-like isoform
X1 [Solanum tuberosum]
Length = 968
Score = 338 bits (866), Expect = 2e-90
Identities = 201/360 (55%), Positives = 231/360 (64%), Gaps = 74/360 (20%)
Frame = -2
Query: 860 LLHHLAEADASGDVICEDKIVEGVDSENLESGFLNQSTLSE-----YEVNANDASSGTLC 696
LLHHLAE+DASGDVIC+DKIVEG+D ENLESGFLNQSTLSE Y+VNANDASSGTLC
Sbjct: 163 LLHHLAESDASGDVICDDKIVEGLDCENLESGFLNQSTLSETLWSKYQVNANDASSGTLC 222
Query: 695 ARYAYMEEPWLLQACTSSPSFDAEMAPDNGEVERSDNEDEA------------QPSFNDQ 552
A YA++EEPWLLQACTSSPSFDAEMAP + EVE+SDN+DEA Q S ++Q
Sbjct: 223 ATYAHVEEPWLLQACTSSPSFDAEMAPYDCEVEQSDNKDEAQPPFSDQLEQLAQTSSSNQ 282
Query: 551 LEQL-------------------------------AQPSTSNQHEQIPEKLLAVD----Q 477
EQ+ Q ++E++ E LL Q
Sbjct: 283 HEQIPEKLLDVDQCDAISKEDSFTTIILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQ 342
Query: 476 CDEI----------SKENSFAAI---------ILINREPFIFLPFCHDSREKIINGSAVD 354
CD + +F I I NREPFIF PFCHDSR K+ING+AVD
Sbjct: 343 CDSVYLGVVTKLAPHMGGAFVNIGTSRPSFMDIKPNREPFIFPPFCHDSRAKVINGAAVD 402
Query: 353 MLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMECVDNEFGEHESGD---ISEVLAGNCN 183
MLEENL LPR KSTL ESME +D+EFG+HESGD I EVLA NCN
Sbjct: 403 MLEENLGLPRYKSTLEEVEADEIDDADIEDESMEYMDSEFGDHESGDTCDILEVLAENCN 462
Query: 182 GNVTEHGIETHSGKYPEESSRIGYQGKDPTIEHAVNGNKVSQRDKSKWVHVRKCTKIIVQ 3
G+VTEHG++THS KYPEESS IGY+G++PTIEHA+NG KVSQRD SKWV VRK TKIIVQ
Sbjct: 463 GSVTEHGLDTHSEKYPEESSGIGYRGQNPTIEHAMNGKKVSQRDDSKWVQVRKGTKIIVQ 522
>ref|NP_001234480.1| ribonuclease E [Solanum lycopersicum] gi|166203325|gb|ABY84671.1|
ribonuclease E [Solanum lycopersicum]
Length = 935
Score = 338 bits (866), Expect = 2e-90
Identities = 197/360 (54%), Positives = 233/360 (64%), Gaps = 74/360 (20%)
Frame = -2
Query: 860 LLHHLAEADASGDVICEDKIVEGVDSENLESGFLNQSTLSE-----YEVNANDASSGTLC 696
LLHHLAE+DASGDVIC++KIVEG+D ENLESGF+NQSTLSE YEVN+NDASSGTLC
Sbjct: 128 LLHHLAESDASGDVICDNKIVEGLDCENLESGFVNQSTLSETLWSKYEVNSNDASSGTLC 187
Query: 695 ARYAYMEEPWLLQACTSSPSFDAEMAPDNGEVERSDNEDEAQ------------PSFNDQ 552
A YA++EEPWLLQAC SPSFDAEMAPD+ EVE+SDN+DEAQ PS ++Q
Sbjct: 188 ATYAHVEEPWLLQACMLSPSFDAEMAPDDFEVEQSDNKDEAQPPFSDQLEQLAQPSSSNQ 247
Query: 551 LEQL-------------------------------AQPSTSNQHEQIPEKLLAVD----Q 477
EQ+ Q ++E++ E LL Q
Sbjct: 248 HEQIPEKLLDVDQCDAISKEDSFTTIILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQ 307
Query: 476 CDEI----------SKENSFAAI---------ILINREPFIFLPFCHDSREKIINGSAVD 354
CD + +F I I NREPF+F PFCHDSREK+ING++VD
Sbjct: 308 CDSVYLGVVTKLAPHMGGAFVNIGTSRPSFMDIKPNREPFVFPPFCHDSREKVINGASVD 367
Query: 353 MLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMECVDNEFGEHESGD---ISEVLAGNCN 183
MLEENL LPRNKSTL ESME +D+EFG+HESGD I EVLA NCN
Sbjct: 368 MLEENLGLPRNKSTLEEVDADEIDDADIEDESMEYMDSEFGDHESGDACDILEVLAENCN 427
Query: 182 GNVTEHGIETHSGKYPEESSRIGYQGKDPTIEHAVNGNKVSQRDKSKWVHVRKCTKIIVQ 3
G+VTEHG+ETHS KYPEESS IGY+G++PTIE A+NG ++SQRD+SKWV VRK TKIIVQ
Sbjct: 428 GSVTEHGLETHSEKYPEESSGIGYRGQNPTIERAMNGKRISQRDESKWVQVRKGTKIIVQ 487
>gb|EXB34463.1| Ribonuclease E [Morus notabilis]
Length = 1044
Score = 66.6 bits (161), Expect = 1e-08
Identities = 91/344 (26%), Positives = 139/344 (40%), Gaps = 62/344 (18%)
Frame = -2
Query: 848 LAEADASGDVICEDKIVEGVDSENLESGFLNQSTLSEYEVNANDASSGTLCARYAYMEEP 669
L E+ S D + K+ E ++S+N + + YE S L RY +EEP
Sbjct: 265 LTESKLSSDNL---KVKEDLNSKN-------DTVTASYE----PISDSFLTERYQPVEEP 310
Query: 668 WLLQACTSSPSF------------DAEMAPDNGEVERSDN---EDEAQPSFNDQLEQLAQ 534
WLLQ SP F D M D +E S+ ++ + D + +
Sbjct: 311 WLLQ----SPLFSIISDDLDLSEKDETMKDDKTRLEDSEKLLPQEGSNTILKDSISTIIL 366
Query: 533 PSTSN---------QHEQIPEKLLAVD----QCDEI----------SKENSFAAI----- 438
++S + Q+ E LL QCD + +F I
Sbjct: 367 INSSICTMQRIAVLEDGQLVELLLEPVKNNVQCDSVYLGVVTKLVPHMGGAFVNIGSYRP 426
Query: 437 ----ILINREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXX 270
I NREPFIF PF H + + +NGS + +E +L+ N T
Sbjct: 427 SLMDIKQNREPFIFPPF-HRATKFEVNGSVTETIENHLAAHGNNQTSFPTEIIDELAVVS 485
Query: 269 XXESMECVDNEFGEHESGD---ISEVLAGNCNGNVTEH------------GIETHSGKYP 135
ES + V +++ +H+S D +SEVLA N NG++ +H G E H G
Sbjct: 486 QEESEQSVLDDYEDHDSEDELDVSEVLADNLNGSIIDHDDAGANYAHNIDGREHHLG--- 542
Query: 134 EESSRIGYQGKDPTIEHAVNGNKVSQRDKSKWVHVRKCTKIIVQ 3
EE+ + + + +G+ V +K+KW V+K T IIVQ
Sbjct: 543 EEAITSSFHAESNSQNMKDSGHAVP--NKNKWAPVQKGTNIIVQ 584
>emb|CBI28473.3| unnamed protein product [Vitis vinifera]
Length = 934
Score = 62.0 bits (149), Expect = 3e-07
Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 15/285 (5%)
Frame = -2
Query: 812 EDKIVEGVDSENLESGFLNQSTLSEYEVNANDA----------SSGTLCARYAYMEEPWL 663
ED+I + + S++L FL+ ++ + + N+ S+GT+ R +EEPWL
Sbjct: 223 EDEIAKCLKSDSLSKLFLDDLSVEDKSFSDNEDTISAMSKGLDSNGTVSMRDQPVEEPWL 282
Query: 662 LQACTSSPSFDAEMAPDNGEVERSDNEDEAQPSFNDQLEQLAQPSTSNQHEQIPEKLLAV 483
LQ +S + EM + S N D AQ ++ L S H EKLL
Sbjct: 283 LQ--SSLIASKEEMVSN-----MSKNIDAAQV----EVSHLKLLDQSYLH---TEKLLPE 328
Query: 482 DQCDEISKENSFAAIILINREPFIFLPFCHDSREKII-NGSAVDMLEENLSLPRNKSTL- 309
+ + ISK++S + +ILIN C R ++ +GS V++L E + ++
Sbjct: 329 EGTNLISKDDSVSTVILINSS------ICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVY 382
Query: 308 --XXXXXXXXXXXXXXXESMECVDNEFGEHESGDISEVL-AGNCNGNVTEHGIETHSGKY 138
++ ++F EHE D +VL + NG++ +H ET +
Sbjct: 383 LGVVTKLVPHMGGAFVNIGIQFAHDDFEEHEVEDDFDVLIKKDLNGSIVDHDSETINNFL 442
Query: 137 PEESSRIGYQGKDPTIEHAVNGNKVSQRDKSKWVHVRKCTKIIVQ 3
P E + + + P + + ++ + ++KW V+K TKIIVQ
Sbjct: 443 PVELEKGFHDSQLPPLLE-MKDSRQAYTVENKWAQVQKGTKIIVQ 486
>emb|CAB76425.1| endoribonuclease E [Arabidopsis thaliana]
Length = 575
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 73 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 131
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 132 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 188
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 189 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 216
>ref|NP_850989.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250721|gb|AEC05815.1| RNAse E/G-like protein
[Arabidopsis thaliana]
Length = 619
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 117 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 175
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 176 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 232
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 233 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 260
>ref|NP_850988.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250722|gb|AEC05816.1| RNAse E/G-like protein
[Arabidopsis thaliana]
Length = 871
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 275 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 333
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 334 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 390
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 391 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 418
>ref|NP_850987.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|25991183|gb|AAN76770.1|AF450479_1 endoribonuclease
[Arabidopsis thaliana] gi|330250719|gb|AEC05813.1| RNAse
E/G-like protein [Arabidopsis thaliana]
Length = 996
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 400 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 458
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 459 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 515
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 516 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 543
>emb|CAD48421.1| putative endoribonuclease E [Arabidopsis thaliana]
Length = 818
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 222 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 280
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 281 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 337
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 338 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 365
>ref|NP_001189510.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|460425419|sp|F4IV66.1|RNE_ARATH RecName:
Full=Ribonuclease E/G-like protein, chloroplastic;
Short=RNase E/G-like protein; AltName: Full=RNase E;
Flags: Precursor gi|330250723|gb|AEC05817.1| RNAse
E/G-like protein [Arabidopsis thaliana]
Length = 1001
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 405 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 463
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 464 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 520
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 521 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 548
>ref|XP_002883633.1| glycoside hydrolase starch-binding domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329473|gb|EFH59892.1| glycoside hydrolase
starch-binding domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 991
Score = 58.9 bits (141), Expect = 2e-06
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + + + P + E
Sbjct: 396 NREPFIFPPFCDGSKKQAADGSPILSIND-IPAPHEIEHASYDFEASSLLDIDSNDPGES 454
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ L G NG V HG + + +G P E ++ +++
Sbjct: 455 FHDDDDEHENDEYHVSDALVGLVNGTVVNHGAVEVGSENGLIPLE--------REHSVDS 506
Query: 83 AVNGNKVSQRDK------SKWVHVRKCTKIIVQ 3
V+ VS+ K +KW+ VRK TKIIVQ
Sbjct: 507 LVSNPSVSKTSKAMPSKDNKWIQVRKGTKIIVQ 539
>ref|NP_178508.2| RNAse E/G-like protein [Arabidopsis thaliana]
gi|20260628|gb|AAM13212.1| putative ribonuclease E
[Arabidopsis thaliana] gi|31711752|gb|AAP68232.1|
At2g04270 [Arabidopsis thaliana]
gi|330250720|gb|AEC05814.1| RNAse E/G-like protein
[Arabidopsis thaliana]
Length = 713
Score = 58.9 bits (141), Expect = 2e-06
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Frame = -2
Query: 428 NREPFIFLPFCHDSREKIINGSAVDMLEENLSLPRNKSTLXXXXXXXXXXXXXXXESMEC 249
NREPFIF PFC S+++ +GS + + ++ P + E
Sbjct: 117 NREPFIFPPFCDGSKKQAADGSPI-LSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGES 175
Query: 248 VDNEFGEHESGD--ISEVLAGNCNGNVTEHG---IETHSGKYPEESSRIGYQGKDPTIEH 84
++ EHE+ + +S+ LAG NG V HG + + +G P E G+
Sbjct: 176 FHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMER---GHSADSLDSNA 232
Query: 83 AV-NGNKVSQRDKSKWVHVRKCTKIIVQ 3
+V +KV +KW+ VRK TKIIVQ
Sbjct: 233 SVAKASKVMSSKDNKWIQVRKGTKIIVQ 260
>ref|XP_006418596.1| hypothetical protein EUTSA_v10002385mg [Eutrema salsugineum]
gi|557096524|gb|ESQ37032.1| hypothetical protein
EUTSA_v10002385mg [Eutrema salsugineum]
Length = 957
Score = 57.8 bits (138), Expect = 5e-06
Identities = 85/361 (23%), Positives = 145/361 (40%), Gaps = 75/361 (20%)
Frame = -2
Query: 860 LLHHLAEADASGDVICEDKIVEG----VDSENLESGFLNQSTLSEYEVNANDASSGTLCA 693
L +H+ A + + D +E + +++E L+ + + N S
Sbjct: 206 LPNHVTSAQSEDECTSADSAIEVPRPLLSDKHIEDESFFCDELATFS-SENSNFSALFSD 264
Query: 692 RYAYMEEPWLLQACTS-----SPSFDAEMAPDN-GEVERSDNEDEAQPSFNDQL---EQL 540
Y +EEPW LQ + + D+E A ++ ++E + + DE + L +++
Sbjct: 265 NYQPIEEPWFLQESITLQHARNMQTDSEQAVESCDDIENNLDTDEQNHQLTETLLPDDEV 324
Query: 539 AQPSTSN------------------QHEQIPEKLLAVD----QCDEI------------- 465
QP + + + E++ E LL QCD +
Sbjct: 325 FQPESISTTILINSSVCTVQRIAVLEGEKLVELLLEPVKTNVQCDSVYLGVVTKFVPHMG 384
Query: 464 -------SKENSFAAIILINREPFIFLPFCHDSREKIINGS----AVDMLE----ENLSL 330
S +SF I NREPFIF PFC S+++ +GS VD+ E+ S
Sbjct: 385 GAFVNIGSARHSFMDI-KPNREPFIFPPFCDGSKKQAADGSQFLSTVDIPASHGIEHASY 443
Query: 329 PRNKSTLXXXXXXXXXXXXXXXESMECVDNEFGEHESGDISEVLAGNCNGNVTEHGIETH 150
S+L D++ E++ +S+ LAG NG V HG E
Sbjct: 444 DFEASSLLDIDSNDPGESFHD-------DDDDHENDEYHVSDALAGLVNGTVVNHG-EVD 495
Query: 149 SG---------KYPEESSRIGYQG--KDPTIEHAVNGNKVSQRDK-SKWVHVRKCTKIIV 6
G ++ E S G+ ++P+ ++ V+ V++ + +KW+ VRK TKIIV
Sbjct: 496 GGSEKCNQGDERHLEVGSENGFVPLEREPSADYLVSNASVAKTSRDNKWIQVRKGTKIIV 555
Query: 5 Q 3
Q
Sbjct: 556 Q 556
>ref|XP_006418595.1| hypothetical protein EUTSA_v10002385mg [Eutrema salsugineum]
gi|557096523|gb|ESQ37031.1| hypothetical protein
EUTSA_v10002385mg [Eutrema salsugineum]
Length = 1009
Score = 57.8 bits (138), Expect = 5e-06
Identities = 85/361 (23%), Positives = 145/361 (40%), Gaps = 75/361 (20%)
Frame = -2
Query: 860 LLHHLAEADASGDVICEDKIVEG----VDSENLESGFLNQSTLSEYEVNANDASSGTLCA 693
L +H+ A + + D +E + +++E L+ + + N S
Sbjct: 206 LPNHVTSAQSEDECTSADSAIEVPRPLLSDKHIEDESFFCDELATFS-SENSNFSALFSD 264
Query: 692 RYAYMEEPWLLQACTS-----SPSFDAEMAPDN-GEVERSDNEDEAQPSFNDQL---EQL 540
Y +EEPW LQ + + D+E A ++ ++E + + DE + L +++
Sbjct: 265 NYQPIEEPWFLQESITLQHARNMQTDSEQAVESCDDIENNLDTDEQNHQLTETLLPDDEV 324
Query: 539 AQPSTSN------------------QHEQIPEKLLAVD----QCDEI------------- 465
QP + + + E++ E LL QCD +
Sbjct: 325 FQPESISTTILINSSVCTVQRIAVLEGEKLVELLLEPVKTNVQCDSVYLGVVTKFVPHMG 384
Query: 464 -------SKENSFAAIILINREPFIFLPFCHDSREKIINGS----AVDMLE----ENLSL 330
S +SF I NREPFIF PFC S+++ +GS VD+ E+ S
Sbjct: 385 GAFVNIGSARHSFMDI-KPNREPFIFPPFCDGSKKQAADGSQFLSTVDIPASHGIEHASY 443
Query: 329 PRNKSTLXXXXXXXXXXXXXXXESMECVDNEFGEHESGDISEVLAGNCNGNVTEHGIETH 150
S+L D++ E++ +S+ LAG NG V HG E
Sbjct: 444 DFEASSLLDIDSNDPGESFHD-------DDDDHENDEYHVSDALAGLVNGTVVNHG-EVD 495
Query: 149 SG---------KYPEESSRIGYQG--KDPTIEHAVNGNKVSQRDK-SKWVHVRKCTKIIV 6
G ++ E S G+ ++P+ ++ V+ V++ + +KW+ VRK TKIIV
Sbjct: 496 GGSEKCNQGDERHLEVGSENGFVPLEREPSADYLVSNASVAKTSRDNKWIQVRKGTKIIV 555
Query: 5 Q 3
Q
Sbjct: 556 Q 556