BLASTX nr result
ID: Atropa21_contig00007471
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00007471 (2109 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006352364.1| PREDICTED: transcription initiation factor I... 791 0.0 ref|XP_006352367.1| PREDICTED: transcription initiation factor I... 785 0.0 ref|XP_004250258.1| PREDICTED: transcription initiation factor I... 774 0.0 emb|CBI33123.3| unnamed protein product [Vitis vinifera] 598 e-168 ref|XP_002262798.2| PREDICTED: transcription initiation factor I... 590 e-166 ref|XP_006467340.1| PREDICTED: transcription initiation factor I... 587 e-165 ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|... 586 e-164 ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr... 586 e-164 ref|XP_002322538.2| transcription initiation factor IIF alpha su... 575 e-161 ref|XP_002308775.1| transcription initiation factor IIF alpha su... 563 e-157 ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu... 549 e-153 gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus... 548 e-153 ref|XP_006586768.1| PREDICTED: transcription initiation factor I... 548 e-153 ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp... 535 e-149 ref|XP_002529600.1| tfiif-alpha, putative [Ricinus communis] gi|... 525 e-146 ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutr... 522 e-145 gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana] 506 e-140 sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation fa... 506 e-140 ref|XP_003573836.1| PREDICTED: transcription initiation factor I... 474 e-131 gb|AAX95773.1| putative transcription initiation factor [Oryza s... 472 e-130 >ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X1 [Solanum tuberosum] gi|565371548|ref|XP_006352365.1| PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X2 [Solanum tuberosum] gi|565371550|ref|XP_006352366.1| PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X3 [Solanum tuberosum] Length = 538 Score = 791 bits (2044), Expect = 0.0 Identities = 410/538 (76%), Positives = 417/538 (77%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTP+TRLIREYN Sbjct: 1 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 VRACSSNDKN+FIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE Sbjct: 61 VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 120 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQFHG LEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK Sbjct: 121 DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKE GSGGTRGRKKTSGDEDEGNASDHG Sbjct: 181 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD 240 Query: 845 XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024 RKNRLGLNKRG+ HEEIFTDDDEAVGN Sbjct: 241 EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN 300 Query: 1025 DPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1204 DPEEREDLAPEIPAPPEIKQ Sbjct: 301 DPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDAEDD 360 Query: 1205 XXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDE 1384 ISPVL VET+SP KPAASG NRGTPTSKSAKTKRKANGDE Sbjct: 361 DDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDE 420 Query: 1385 SKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRA 1564 SKPT+GAPLKKVKTETD KPGKDETPS+AKNSAL VTEDEIRA Sbjct: 421 SKPTSGAPLKKVKTETDAKPGKDETPSSAKNSALPKGASSSSKTAPSPATGPVTEDEIRA 480 Query: 1565 VLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRERTNQ 1738 VLLQRKPVTTQDLVSQFKSRLKCKEDK AFAEVLRKISKIQKT +GSSYVVLRERTNQ Sbjct: 481 VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRERTNQ 538 >ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X4 [Solanum tuberosum] Length = 535 Score = 785 bits (2028), Expect = 0.0 Identities = 407/535 (76%), Positives = 414/535 (77%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTP+TRLIREYN Sbjct: 1 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 VRACSSNDKN+FIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE Sbjct: 61 VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 120 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQFHG LEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK Sbjct: 121 DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKE GSGGTRGRKKTSGDEDEGNASDHG Sbjct: 181 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD 240 Query: 845 XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024 RKNRLGLNKRG+ HEEIFTDDDEAVGN Sbjct: 241 EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN 300 Query: 1025 DPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1204 DPEEREDLAPEIPAPPEIKQ Sbjct: 301 DPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDAEDD 360 Query: 1205 XXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDE 1384 ISPVL VET+SP KPAASG NRGTPTSKSAKTKRKANGDE Sbjct: 361 DDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDE 420 Query: 1385 SKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRA 1564 SKPT+GAPLKKVKTETD KPGKDETPS+AKNSAL VTEDEIRA Sbjct: 421 SKPTSGAPLKKVKTETDAKPGKDETPSSAKNSALPKGASSSSKTAPSPATGPVTEDEIRA 480 Query: 1565 VLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 VLLQRKPVTTQDLVSQFKSRLKCKEDK AFAEVLRKISKIQKT +GSSYVVLRER Sbjct: 481 VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 535 >ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like [Solanum lycopersicum] Length = 534 Score = 774 bits (1998), Expect = 0.0 Identities = 403/535 (75%), Positives = 412/535 (77%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTP+TRLIREYN Sbjct: 1 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 VRACSSNDKN+FIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE Sbjct: 61 VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 120 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQFHG LEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK Sbjct: 121 DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844 NRRKTADGYQRWMMKAANNGPAAFGE+ERFDDKE GSGGTRGRKKTSGDEDEGNASDHG Sbjct: 181 NRRKTADGYQRWMMKAANNGPAAFGELERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD 240 Query: 845 XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024 RKNRLGLNKRG+ HEEIFTDDDEAVGN Sbjct: 241 EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN 300 Query: 1025 DPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1204 DPEEREDLAPEIPAPPEIKQ Sbjct: 301 DPEEREDLAPEIPAPPEIKQ-DEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDEDD 359 Query: 1205 XXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDE 1384 ISPVL VET+SP K AASG NRGTPTSKSAKTKRKANGDE Sbjct: 360 DDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKAAASGSNRGTPTSKSAKTKRKANGDE 419 Query: 1385 SKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRA 1564 SKPT+GAPLKKVKTE D KPGKDETPS+AKN+AL VTEDEIRA Sbjct: 420 SKPTSGAPLKKVKTEADAKPGKDETPSSAKNTALPKGASSSSKTAPSSATGPVTEDEIRA 479 Query: 1565 VLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 VLLQRKPVTTQDLVSQFKSRLKCKEDK AFAEVLRKISKIQKT +GSSYVVLRER Sbjct: 480 VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 534 >emb|CBI33123.3| unnamed protein product [Vitis vinifera] Length = 539 Score = 598 bits (1541), Expect = e-168 Identities = 323/541 (59%), Positives = 367/541 (67%), Gaps = 6/541 (1%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL+LKPSCS CGS++DLYGS+CKH+TLCLSCGK MAE KCY+CGTP+TRLIREYN Sbjct: 1 MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VR SS DKNYFI RF +GLP FSKKKN D+KW+L KEGLQGRQV+D LREKYKNKPWLL Sbjct: 61 VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661 EDETGQ+Q+HGQLEG+QSA YYLLMMQG+E AIPAGSWYNFNKVAQYKQLTLEEAEEKM Sbjct: 121 EDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180 Query: 662 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG--SGGTRGRKKTSGDEDEGNASD 835 KNRR+TADGYQRWMMKAANNGPAAFGEVE+ DDKE+G +GG RGRKK +GDE+EGN SD Sbjct: 181 KNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSD 240 Query: 836 HGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEA 1015 RKNRLGLNKR HEEIFTDDDEA Sbjct: 241 KAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEA 300 Query: 1016 VGNDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192 VGNDPEEREDLAPE+PAPPEIKQ Sbjct: 301 VGNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDA 360 Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKA 1372 +SPVL + +SP K A + PTSKS+K KRK+ Sbjct: 361 EDDDDDEEEDEIGLSPVLAPKQKDVPKEEPAD-NSPMKSATASARSTPPTSKSSKGKRKS 419 Query: 1373 NGDESKPTNGAPLKKVKTETDVK-PGKDETPSTAKNSAL-XXXXXXXXXXXXXXXXXXVT 1546 NGD+ K TNG P KKVKTE + K KDE PS +K +A VT Sbjct: 420 NGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVT 479 Query: 1547 EDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726 EDEIRAVLLQ+ PVTTQDLV++FK+RLK +EDK AFA++LR+ISKIQKT +G +YVVLR+ Sbjct: 480 EDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKT-NGPNYVVLRD 538 Query: 1727 R 1729 + Sbjct: 539 K 539 >ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like [Vitis vinifera] Length = 534 Score = 590 bits (1522), Expect = e-166 Identities = 319/536 (59%), Positives = 363/536 (67%), Gaps = 6/536 (1%) Frame = +2 Query: 140 ILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNVRACS 319 +LKPSCS CGS++DLYGS+CKH+TLCLSCGK MAE KCY+CGTP+TRLIREYNVR S Sbjct: 1 MLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNS 60 Query: 320 SNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETG 496 S DKNYFI RF +GLP FSKKKN D+KW+L KEGLQGRQV+D LREKYKNKPWLLEDETG Sbjct: 61 SGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETG 120 Query: 497 QFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 676 Q+Q+HGQLEG+QSA YYLLMMQG+E AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRR+ Sbjct: 121 QYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRR 180 Query: 677 TADGYQRWMMKAANNGPAAFGEVERFDDKESG--SGGTRGRKKTSGDEDEGNASDHGXXX 850 TADGYQRWMMKAANNGPAAFGEVE+ DDKE+G +GG RGRKK +GDE+EGN SD Sbjct: 181 TADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEED 240 Query: 851 XXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGNDP 1030 RKNRLGLNKR HEEIFTDDDEAVGNDP Sbjct: 241 EEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDP 300 Query: 1031 EEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1207 EEREDLAPE+PAPPEIKQ Sbjct: 301 EEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDAEDDDD 360 Query: 1208 XXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDES 1387 +SPVL + +SP K A + PTSKS+K KRK+NGD+ Sbjct: 361 DEEEDEIGLSPVLAPKQKDVPKEEPAD-NSPMKSATASARSTPPTSKSSKGKRKSNGDDM 419 Query: 1388 KPTNGAPLKKVKTETDVK-PGKDETPSTAKNSAL-XXXXXXXXXXXXXXXXXXVTEDEIR 1561 K TNG P KKVKTE + K KDE PS +K +A VTEDEIR Sbjct: 420 KTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTEDEIR 479 Query: 1562 AVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 AVLLQ+ PVTTQDLV++FK+RLK +EDK AFA++LR+ISKIQKT +G +YVVLR++ Sbjct: 480 AVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKT-NGPNYVVLRDK 534 >ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X1 [Citrus sinensis] gi|568825955|ref|XP_006467341.1| PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X2 [Citrus sinensis] Length = 538 Score = 587 bits (1513), Expect = e-165 Identities = 314/539 (58%), Positives = 360/539 (66%), Gaps = 4/539 (0%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL+LKP CS CGS +DLYGS+CKH+TLCL+CGK MAE + KC++CG +TRLIREYN Sbjct: 1 MSFDLLLKPQCSGCGSQADLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VR +S+DKNYFI RF SGLP FSKKKN ++KWTL K+GLQGRQVTDTLREKYKNKPW+L Sbjct: 61 VRPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWML 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661 EDETGQ Q+ G LEG+QSA YYLL+M +E AIPAGSWYNFNKVAQYKQLTLEEAEEKM Sbjct: 121 EDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180 Query: 662 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHG 841 KNRRKTADGY+RWMMKAANNG AAFGEVE+ DDKES G RGR K SGDEDEGN SD G Sbjct: 181 KNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRG 240 Query: 842 XXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVG 1021 RKNRLGLNKRG HEEIFTDDDEAVG Sbjct: 241 EEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300 Query: 1022 NDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198 NDPEEREDLAPE+PAPPEIKQ Sbjct: 301 NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDD 360 Query: 1199 XXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRKAN 1375 SP+L +SP+KPA SG R TP TSKSAK KRK+N Sbjct: 361 DEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSN 420 Query: 1376 GDESKPTNGAPLKKVKTETDVK-PGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTED 1552 GD+++ +GAPLKKVKTE + K +DE S +K+SA VT + Sbjct: 421 GDDARAPSGAPLKKVKTENETKSSARDENVSASKSSA-PAKGASSSRTGSTSASGPVTAE 479 Query: 1553 EIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 EIRAVLLQ+ PVTTQDLV++FK RL+ ED+TAFA++L++ISKIQKT S+YVVLRE+ Sbjct: 480 EIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538 >ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1| tfiif-alpha, putative [Ricinus communis] Length = 533 Score = 586 bits (1511), Expect = e-164 Identities = 317/538 (58%), Positives = 368/538 (68%), Gaps = 4/538 (0%) Frame = +2 Query: 128 SIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNV 307 ++DL+LK SCS CGS++DLYGS+CKH+TLCLSCGK MAE KC++CG ++RLIREYNV Sbjct: 3 TMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNV 62 Query: 308 RACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 RA SS+DKNYFI RF +GLP FSKKKN ++KW+LQKEGLQGRQ+TD LREKYKN+PWLLE Sbjct: 63 RASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLE 122 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQ+ G LEG+QSA YYLL++QG+E AIPA SWYNFNKVAQYKQLTLEEAEEKM+ Sbjct: 123 DETGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMR 182 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844 NRRKTADGY+RWMMKAANNGPAAFGEVE+ DDK+SG+ RGRKK +GD++EGN SD G Sbjct: 183 NRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRGD 242 Query: 845 XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024 RKNRLGLNKRG HEEIFTDDDEAVGN Sbjct: 243 EDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVGN 302 Query: 1025 DPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1201 D EEREDLAPE+PAPPEIKQ Sbjct: 303 DREEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGRAGGLNDSDAEDDD 362 Query: 1202 XXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRKANG 1378 ISPVL +SP+KP S ++GTP TSKSAK KRK N Sbjct: 363 DDDDMDEDVSISPVLAPKQTPKEEP---ADNSPAKPMTSASSKGTPSTSKSAKGKRKLNS 419 Query: 1379 DESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDE 1555 DE+K TN AP KKVKTE ++KP K+E+ T+K+SA VTE+E Sbjct: 420 DEAKQTNVAPQKKVKTENELKPTVKEESAPTSKSSA---TPKAAPPSAKTGSTSPVTEEE 476 Query: 1556 IRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 IRAVLLQ PVTTQDLV++FKSRLK EDK AFA++LR+ISKIQKT SGSSYVVLR++ Sbjct: 477 IRAVLLQNGPVTTQDLVARFKSRLKSSEDKKAFADILRRISKIQKT-SGSSYVVLRDK 533 >ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina] gi|567915083|ref|XP_006449855.1| hypothetical protein CICLE_v10014841mg [Citrus clementina] gi|557552465|gb|ESR63094.1| hypothetical protein CICLE_v10014841mg [Citrus clementina] gi|557552466|gb|ESR63095.1| hypothetical protein CICLE_v10014841mg [Citrus clementina] Length = 538 Score = 586 bits (1510), Expect = e-164 Identities = 314/539 (58%), Positives = 359/539 (66%), Gaps = 4/539 (0%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL+LKP CS CGS DLYGS+CKH+TLCL+CGK MAE + KC++CG +TRLIREYN Sbjct: 1 MSFDLLLKPQCSGCGSQVDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VR +S+DKNYFI RF SGLP FSKKKN ++KWTL K+GLQGRQVTDTLREKYKNKPW+L Sbjct: 61 VRPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWML 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661 EDETGQ Q+ G LEG+QSA YYLL+M +E AIPAGSWYNFNKVAQYKQLTLEEAEEKM Sbjct: 121 EDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180 Query: 662 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHG 841 KNRRKTADGY+RWMMKAANNG AAFGEVE+ DDKES G RGR K SGDEDEGN SD G Sbjct: 181 KNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRG 240 Query: 842 XXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVG 1021 RKNRLGLNKRG HEEIFTDDDEAVG Sbjct: 241 EEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300 Query: 1022 NDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198 NDPEEREDLAPE+PAPPEIKQ Sbjct: 301 NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDD 360 Query: 1199 XXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRKAN 1375 SP+L +SP+KPA SG R TP TSKSAK KRK+N Sbjct: 361 DEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSN 420 Query: 1376 GDESKPTNGAPLKKVKTETDVK-PGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTED 1552 GD+++ +GAPLKKVKTE + K +DE S +K+SA VT + Sbjct: 421 GDDARAPSGAPLKKVKTENETKSSARDENVSASKSSA-PAKGASSSRTGSTSASGPVTAE 479 Query: 1553 EIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 EIRAVLLQ+ PVTTQDLV++FK RL+ ED+TAFA++L++ISKIQKT S+YVVLRE+ Sbjct: 480 EIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538 >ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein [Populus trichocarpa] gi|550320589|gb|EEF04299.2| transcription initiation factor IIF alpha subunit family protein [Populus trichocarpa] Length = 540 Score = 575 bits (1481), Expect = e-161 Identities = 310/542 (57%), Positives = 363/542 (66%), Gaps = 7/542 (1%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL+LKPSCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CGT ++RLIREYN Sbjct: 1 MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VRA +S+DKNYFI RF +GLP FSKKKN ++KW+L KEG+ GRQ+TD LREK+KNKPWLL Sbjct: 61 VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSW--YNFNKVAQYKQLTLEEAEE 655 EDETGQ Q+ G LEG+QSA YYLLMM G+E AIPAGSW YNFNKVA YKQLTLEEAEE Sbjct: 121 EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEE 180 Query: 656 KMKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKES-GSGGTRGRKKTSGDEDEGNAS 832 KMKNRRKTADGY+RWMMKAANNG AAFGEVE+ DDKE +GG GR+K SGD+DEGN S Sbjct: 181 KMKNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVS 240 Query: 833 DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012 D G RK+RLGLNK+G HEEIFTDDDE Sbjct: 241 DRGEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300 Query: 1013 AVGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192 AV DPEEREDLAPE+PAPPEIKQ Sbjct: 301 AVAIDPEEREDLAPEVPAPPEIKQ-DEDDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359 Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRK 1369 ISPVL SP+KP SG +GTP TSKSAK KRK Sbjct: 360 VEDDDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKGKRK 419 Query: 1370 ANGDESKPTNGAPLKKVKTETDVKPG--KDETPSTAKNSALXXXXXXXXXXXXXXXXXXV 1543 NG+++K +NGAP+KKVKTE +VKP ++ +P+T + V Sbjct: 420 LNGEDAKSSNGAPVKKVKTENEVKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPV 479 Query: 1544 TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLR 1723 TE+EIRAVLLQ PVTTQDLV++FKSRL+ EDK AFA++LR+ISKIQKT SGS+YVVLR Sbjct: 480 TEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKT-SGSNYVVLR 538 Query: 1724 ER 1729 ++ Sbjct: 539 DK 540 >ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein [Populus trichocarpa] gi|222854751|gb|EEE92298.1| transcription initiation factor IIF alpha subunit family protein [Populus trichocarpa] Length = 541 Score = 563 bits (1450), Expect = e-157 Identities = 306/542 (56%), Positives = 361/542 (66%), Gaps = 7/542 (1%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL L+PSCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CG +TRLIREYN Sbjct: 1 MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VRA +S++KNYFI RF +GLP FSKKKN ++KW+L KEG+ GRQ+TDTLREK+KNKPWLL Sbjct: 61 VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSW--YNFNKVAQYKQLTLEEAEE 655 EDETGQFQ+ G LEG+QSA YYLLMM G+E AIPAGSW YNFNKVA YKQLTLEEAEE Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180 Query: 656 KMKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKES-GSGGTRGRKKTSGDEDEGNAS 832 KMKNRRKTADGY+RWMMKAA+NG AAFGEVE+ DDK+ +GG GRKK +GD+DEGN S Sbjct: 181 KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240 Query: 833 DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012 D G RK+RLGLNK G HEEIFTDDDE Sbjct: 241 DKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300 Query: 1013 AVGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192 AV DPEEREDLAPE+PAPPEIKQ Sbjct: 301 AVAIDPEEREDLAPEVPAPPEIKQ-DEEDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359 Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRK 1369 ISPVL +SP+KP G +GTP TSKSAK KRK Sbjct: 360 AEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRK 419 Query: 1370 ANGDESKPTNGAPLKKVKTETDVKP--GKDETPSTAKNSALXXXXXXXXXXXXXXXXXXV 1543 N D++K +NGAP+KKVKTE +VKP ++ +P+T + V Sbjct: 420 LNADDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPV 479 Query: 1544 TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLR 1723 TE+EIRAVLLQ PVTTQDLV++FKSRL+ EDK AFA++LR+ISKIQKT SGS++VVLR Sbjct: 480 TEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKT-SGSNFVVLR 538 Query: 1724 ER 1729 ++ Sbjct: 539 DK 540 >ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa] gi|550335193|gb|ERP58675.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa] Length = 536 Score = 549 bits (1415), Expect = e-153 Identities = 302/542 (55%), Positives = 357/542 (65%), Gaps = 7/542 (1%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL L+PSCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CG +TRLIREYN Sbjct: 1 MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VRA +S++KNYFI RF +GLP FSKKKN ++KW+L KEG+ GRQ+TDTLREK+KNKPWLL Sbjct: 61 VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSW--YNFNKVAQYKQLTLEEAEE 655 EDETGQFQ+ G LEG+QSA YYLLMM G+E AIPAGSW YNFNKVA YKQLTLEEAEE Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180 Query: 656 KMKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKES-GSGGTRGRKKTSGDEDEGNAS 832 KMKNRRKTADGY+RWMMKAA+NG AAFGEVE+ DDK+ +GG GRKK +GD+DEGN S Sbjct: 181 KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240 Query: 833 DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012 D G RK+RLGLNK G HEEIFTDDDE Sbjct: 241 DKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300 Query: 1013 AVGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192 AV DPEEREDLAPE+PAPPEIKQ Sbjct: 301 AVAIDPEEREDLAPEVPAPPEIKQ-DEEDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359 Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRK 1369 ISPVL +SP+KP G +GTP TSKSAK KRK Sbjct: 360 AEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRK 419 Query: 1370 ANGDESKPTNGAPLKKVKTETDVKP--GKDETPSTAKNSALXXXXXXXXXXXXXXXXXXV 1543 N D++K +NGAP+KK +VKP ++ +P+T + V Sbjct: 420 LNADDAKTSNGAPVKK-----EVKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPV 474 Query: 1544 TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLR 1723 TE+EIRAVLLQ PVTTQDLV++FKSRL+ EDK AFA++LR+ISKIQKT SGS++VVLR Sbjct: 475 TEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKT-SGSNFVVLR 533 Query: 1724 ER 1729 ++ Sbjct: 534 DK 535 >gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris] Length = 540 Score = 548 bits (1413), Expect = e-153 Identities = 303/544 (55%), Positives = 360/544 (66%), Gaps = 9/544 (1%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MSIDL+LKP+C CGS++DLYGS+CKH+TLCL+CGK MAE + KC++CG +TRLIREY+ Sbjct: 1 MSIDLLLKPTCGGCGSTTDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGATVTRLIREYS 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VRA S +DK+YFI RF SGLP FSKKK+ ++KW+LQKEGLQ RQVTD LREKYKNKPWLL Sbjct: 61 VRASSGSDKHYFIGRFVSGLPDFSKKKSAENKWSLQKEGLQSRQVTDALREKYKNKPWLL 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661 EDETGQ QF G LEGAQSA YYLLMM+ +E AIPAGSWYNFNKVAQYKQLTLEEAEEKM Sbjct: 121 EDETGQSQFQGHLEGAQSATYYLLMMERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180 Query: 662 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG-SGGTRGRKKTSGDEDEGNASDH 838 KNR+KTADGY+RWMMKAANNGPAAFGE RFD+KES GG + RKKT DE EG+ SD Sbjct: 181 KNRKKTADGYERWMMKAANNGPAAFGERGRFDEKESNVGGGGKNRKKTDEDE-EGHVSDK 239 Query: 839 GXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAV 1018 G R++RLGLNK+G HEEIFTDDDEAV Sbjct: 240 GEEDEDDEVARRSRLGLNKKGGDDDEEGPRGGDLDQDDDDIEKGDDWEHEEIFTDDDEAV 299 Query: 1019 GNDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1195 GNDPEEREDLAPE+PAPPEIKQ Sbjct: 300 GNDPEEREDLAPEVPAPPEIKQDDEDEDEDNEEGGGLSKSGKELKKLLRTSGLNESDAED 359 Query: 1196 XXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGT-PTSKSAKTKRKA 1372 + PV+ + S PSKPA +G RGT TSK +K KRK Sbjct: 360 DDDDDDVDDEAGVPPVIASKPKDAPKEEPADNS-PSKPAVTGTARGTLSTSKPSKGKRKL 418 Query: 1373 NGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS----ALXXXXXXXXXXXXXXXXX 1537 N +E+K NGAP KKVK E + K KDE ST+KN+ + Sbjct: 419 N-EETKAANGAPPKKVKIENEPKSTVKDENGSTSKNNTPSKGVPPTPSSKGGSSSPIASG 477 Query: 1538 XVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVV 1717 V+E+EIRAVL+Q+ P+TTQDLV++F++RL+C EDK AFA++L++ISKIQKT + SSYV+ Sbjct: 478 PVSEEEIRAVLMQKTPLTTQDLVAKFRARLRCPEDKKAFADILKRISKIQKT-NASSYVI 536 Query: 1718 LRER 1729 LR+R Sbjct: 537 LRDR 540 >ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] Length = 536 Score = 548 bits (1411), Expect = e-153 Identities = 296/539 (54%), Positives = 348/539 (64%), Gaps = 4/539 (0%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS DL LK SCS CGS++DLYGS+CKH+TLCL CGK MA R KC +CG +TRLIREYN Sbjct: 1 MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481 VRA S NDKNYFI RF +GLP FSKKK+ ++KW+LQK+GL GRQ+TDTLREKYKNKPWLL Sbjct: 61 VRASSPNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL 120 Query: 482 EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661 EDETGQ QF G LEG+QSA YYLLM + +E AIPAGSWYNFNKVAQYKQLTLEEAEEKM Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180 Query: 662 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHG 841 KNR+KTADGYQRWMMKAANNGPAAFGE +FDD ES +GG R KKT ++DEG+ SD G Sbjct: 181 KNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDNESNTGGGRSHKKTD-EDDEGHVSDKG 239 Query: 842 XXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVG 1021 RK+RLGLNKR HEEIFTDDDEAVG Sbjct: 240 EEDEEEESERKSRLGLNKRAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVG 299 Query: 1022 NDPEEREDLAPEIPAPPEIKQ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192 NDPEEREDLAPE+PAPPEIKQ Sbjct: 300 NDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGEGLSKSGKELKKLLGKASGLNESDAED 359 Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKA 1372 + PV+ ++ S PSKP A+GP RGTP+SKS+K KRK Sbjct: 360 DDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNS-PSKPTATGPARGTPSSKSSKGKRKL 418 Query: 1373 NGDESKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTED 1552 N +E+KP+N A KK + + S+A V+E+ Sbjct: 419 N-EETKPSNTATPKKEPKLSAKDVNGSASKSSAPPKGTPPLSSKGGSSTTTTASGPVSEE 477 Query: 1553 EIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 EIRAVL Q+ PVTTQDLV++FK+RL+C EDK AFAE+L++ISKIQKT +G+SYV+LR++ Sbjct: 478 EIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRDK 536 >ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata] gi|297318500|gb|EFH48922.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata] Length = 619 Score = 535 bits (1378), Expect = e-149 Identities = 300/545 (55%), Positives = 345/545 (63%), Gaps = 11/545 (2%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS L LKP+C CGS SDLYGSSC+H+TLCL CG+ MAE + KC +CGT +TRLIREYN Sbjct: 1 MSNCLQLKPACMGCGSQSDLYGSSCRHMTLCLKCGRTMAENKAKCLDCGTVLTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 VRA + DKNYFI RF +GLP F KK +++KW+L+K+ QGRQ TD REK KNKPW+LE Sbjct: 61 VRAAAPTDKNYFIGRFVTGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE 119 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQ+ G LEG+QSA YYLL+MQ +E AIPAGSWYNFNKVAQYKQLTLEEAEEKMK Sbjct: 120 DETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 179 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNAS 832 NRRKTADGYQRWMMKAANNGPA FGEV+ +DKESG GG RGRKK+S GDEDEGN S Sbjct: 180 NRRKTADGYQRWMMKAANNGPALFGEVD--NDKESGGSSGGGGRGRKKSSGGDEDEGNVS 237 Query: 833 DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012 D G RK+RLGLNK+ HEEIFTDDDE Sbjct: 238 DRGEEDEEEEASRKSRLGLNKKSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 297 Query: 1013 AVGNDPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1189 AVGNDPEERED LAPEIPAPPEIKQ Sbjct: 298 AVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLNESD 357 Query: 1190 XXXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRK 1369 PV VE ++P+KP SGP+RGTP +K +K KRK Sbjct: 358 EDDDDDSDDEEETNFGPVTNSKQKEVAKEEPVE-NAPAKPTPSGPSRGTPPAKPSKGKRK 416 Query: 1370 ANGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS-----ALXXXXXXXXXXXXXXX 1531 N +SK + + KKVKTE D K K+E +T S A+ Sbjct: 417 LNDGDSKKPSSSVQKKVKTENDPKSSVKEERANTVSKSNTPTKAVKAEPASAPAASSSAA 476 Query: 1532 XXXVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSY 1711 VTEDEIRAVL+++K VTTQDLVS+FK+RLK KEDK AFA +LRKISKIQK A ++ Sbjct: 477 TGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNF 536 Query: 1712 VVLRE 1726 VVLRE Sbjct: 537 VVLRE 541 Score = 66.2 bits (160), Expect = 5e-08 Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 1/63 (1%) Frame = +2 Query: 1541 VTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSY-VV 1717 VTEDE+R+VL++ K +TT +LV +FK RL +E+K FA +L+KI+K+QK A Y +V Sbjct: 557 VTEDELRSVLMETKQLTTLELVMRFKERLTTREEKDTFAHILKKIAKLQKNAGSLKYFLV 616 Query: 1718 LRE 1726 LRE Sbjct: 617 LRE 619 >ref|XP_002529600.1| tfiif-alpha, putative [Ricinus communis] gi|223530933|gb|EEF32792.1| tfiif-alpha, putative [Ricinus communis] Length = 584 Score = 525 bits (1351), Expect = e-146 Identities = 293/585 (50%), Positives = 353/585 (60%), Gaps = 50/585 (8%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLI---- 292 MS+DL LK SCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CG IT+ + Sbjct: 1 MSVDLQLKSSCSECGSTTDLYGSNCKHMTLCLNCGKTMAENRRKCFDCGVTITQRLLGLG 60 Query: 293 ----------------------------------------REYNVRACSSNDKNYFIARF 352 +EYNVRA S+DKNYFI RF Sbjct: 61 SLSWAGHQVHVSLPINQFLNAGVDPKEISLPHEFILNWDTKEYNVRASPSSDKNYFIGRF 120 Query: 353 ASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGQLEGA 529 +GLP FSKKKN ++KW++ KEGLQGRQ+TD LREK+KNKPWLLEDETGQ+Q+HG LEG+ Sbjct: 121 VTGLPIFSKKKNAENKWSIHKEGLQGRQLTDALREKFKNKPWLLEDETGQYQYHGHLEGS 180 Query: 530 QSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMK 709 QSA YYLL++QG+E AIPA SWYNFNKVAQYK LTLEEAEEKMKNRRKTADGY+RWMMK Sbjct: 181 QSATYYLLILQGKEFVAIPAASWYNFNKVAQYKMLTLEEAEEKMKNRRKTADGYERWMMK 240 Query: 710 AANNGPAAFGEVERFDDKESGSGGTRGRKKTSG-DEDEGNASDHGXXXXXXXXXRKNRLG 886 AANNGPAAFGE+E+ DDK+ + RGR+KT+G D+DEG SD G RKNRLG Sbjct: 241 AANNGPAAFGEMEKPDDKDVRTTSGRGRRKTAGDDDDEGKISDKGEEDEEEEMSRKNRLG 300 Query: 887 LNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGNDPEEREDLAPEIPA 1066 LN++G HEEIFTDDDEAVGNDPEER+DL PE+PA Sbjct: 301 LNRQGGGDDDEGPRGGDHDMDDDDVEKGDDWEHEEIFTDDDEAVGNDPEERQDLGPELPA 360 Query: 1067 PPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISPVL 1246 PPEIKQ +SPVL Sbjct: 361 PPEIKQDEDDEDEENEEGGLSKSGKELKALLGRSGGLDDTDAEDDDDDDMDEDTGLSPVL 420 Query: 1247 XXXXXXXXXXXXVETSSPSKPAASGPNRGT-PTSKSAKTKRKANGDESKPTNGAPLKKVK 1423 +SP+KP S +G SKSAK KRK NGD+ K +N +P KKVK Sbjct: 421 AQKQKDAPIKEEPGDNSPAKPMHSSSAKGALSASKSAKGKRKTNGDDGKTSNVSPQKKVK 480 Query: 1424 TETDVK---PGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRAVLLQRKPVTT 1594 TE + K ++ S +K+SA VT++EI+AVLLQ PVTT Sbjct: 481 TENESKHIVKEENVPTSKSKSSANPKGAAASLRTESTSSTGFVTDEEIKAVLLQNGPVTT 540 Query: 1595 QDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729 QDLV++FKSRLK +EDK AF L++IS+IQKT SG SYVVLR++ Sbjct: 541 QDLVAKFKSRLKTREDKEAFTHTLKRISRIQKT-SGGSYVVLRDK 584 >ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum] gi|557097757|gb|ESQ38193.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum] Length = 542 Score = 522 bits (1345), Expect = e-145 Identities = 292/541 (53%), Positives = 337/541 (62%), Gaps = 10/541 (1%) Frame = +2 Query: 137 LILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNVRAC 316 L LK C RC S SDLYGSSC+H+TLC CGK MAE + KC +CGT +TRLIREYNVRA Sbjct: 6 LTLKSECMRCKSPSDLYGSSCRHMTLCFKCGKTMAENKSKCIDCGTIVTRLIREYNVRAA 65 Query: 317 SSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETG 496 + DKNYFI RF SGLP F KK +++KW+L+K+ QGRQ TD REK KNKPW+LEDETG Sbjct: 66 APTDKNYFIGRFVSGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDETG 124 Query: 497 QFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 676 QFQ+ G LEG+QSA YYLL+MQ +E AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK Sbjct: 125 QFQYQGHLEGSQSATYYLLVMQNKEFIAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 184 Query: 677 TADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNASDHGX 844 TADGYQRWMMKAANNGPA FGE E +DKE+G GG RGRKK+S GDE+EGN SD G Sbjct: 185 TADGYQRWMMKAANNGPALFGETE--NDKEAGGSSGGGGRGRKKSSGGDEEEGNVSDRGE 242 Query: 845 XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024 RK+RLGLNK+ HEEIFTDDDEAVGN Sbjct: 243 EDEEEEASRKSRLGLNKKSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGN 302 Query: 1025 DPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1201 DPEERED LAPEIPAPPEIKQ Sbjct: 303 DPEEREDLLAPEIPAPPEIKQDDDDEENEEEEGGLSKSGKELKKLLGKSNGLNESDEEDD 362 Query: 1202 XXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGD 1381 P+ VE S+P KPA S +RGTP++K +K KRK N Sbjct: 363 DDSDDDEETNFGPITNSKQKDATKEEPVE-STPPKPAPSVSSRGTPSAKPSKGKRKLNDG 421 Query: 1382 ESKPTNGAPLKKVKTETD-----VKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVT 1546 ++K + + KKVKTE++ VK K + S + VT Sbjct: 422 DAKKPSSSVQKKVKTESESKSSSVKEEKSNSISKSNAPTKAVKPESTSAPAASAATGPVT 481 Query: 1547 EDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726 EDEIR VL+++K VTTQDLVS+FK+RLK KEDK AFAE+LRKISKIQK A ++VVLRE Sbjct: 482 EDEIRGVLMEKKQVTTQDLVSRFKARLKTKEDKNAFAEILRKISKIQKNAGSQNFVVLRE 541 Query: 1727 R 1729 R Sbjct: 542 R 542 >gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana] Length = 640 Score = 506 bits (1303), Expect = e-140 Identities = 290/547 (53%), Positives = 336/547 (61%), Gaps = 12/547 (2%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS L L SC CGS SDLYGSSC+H+TLCL CG+ MA+ + KC+ECGT +TRLIREYN Sbjct: 1 MSNCLQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 VRA + DKNYFI RF +GLP F KK +++KW+L+K+ QGRQ TD REK KNKPW+LE Sbjct: 61 VRAAAPTDKNYFIGRFVTGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE 119 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQ+ G LEG+QSA YYLL+MQ +E AIPAGSWYNFNKVAQYKQLTLEEAEEKMK Sbjct: 120 DETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 179 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNAS 832 NRRKTADGYQRWMMKAANNGPA FGEV+ ++KESG GG RGRKK+S GDE+EGN S Sbjct: 180 NRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGGRGRKKSSGGDEEEGNVS 237 Query: 833 DHGXXXXXXXXXRKNRLGLN-KRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDD 1009 D G RK+RLGLN K HEEIFTDDD Sbjct: 238 DRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 297 Query: 1010 EAVGNDPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1186 EAVGNDPEERED LAPEIPAPPEIKQ Sbjct: 298 EAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDES 357 Query: 1187 XXXXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKR 1366 V V+ + + P RGTP +K +K KR Sbjct: 358 DEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPP-RGTPPAKPSKGKR 416 Query: 1367 KANGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS-----ALXXXXXXXXXXXXXX 1528 K N +SK + + KKVKTE D K K+E +T S A+ Sbjct: 417 KLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSA 476 Query: 1529 XXXXVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSS 1708 VTEDEIRAVL+++K VTTQDLVS+FK+RLK KEDK AFA +LRKISKIQK A + Sbjct: 477 ATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQN 536 Query: 1709 YVVLRER 1729 +VVLRE+ Sbjct: 537 FVVLREK 543 Score = 65.1 bits (157), Expect = 1e-07 Identities = 30/60 (50%), Positives = 44/60 (73%) Frame = +2 Query: 1541 VTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVL 1720 VTEDEIR VL+++K +TT +LV +FK RL EDK +F+ +L+KI+K+QK +VV+ Sbjct: 572 VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKITKLQKNPGSEKFVVV 631 >sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation factor IIF subunit alpha; Short=TFIIF-alpha; AltName: Full=General transcription factor IIF subunit 1; AltName: Full=Transcription initiation factor RAP74 homolog; Short=AtRAP74 gi|5823572|emb|CAB53754.1| putative protein [Arabidopsis thaliana] gi|7267963|emb|CAB78304.1| putative protein [Arabidopsis thaliana] Length = 649 Score = 506 bits (1303), Expect = e-140 Identities = 290/547 (53%), Positives = 336/547 (61%), Gaps = 12/547 (2%) Frame = +2 Query: 125 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304 MS L L SC CGS SDLYGSSC+H+TLCL CG+ MA+ + KC+ECGT +TRLIREYN Sbjct: 1 MSNCLQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYN 60 Query: 305 VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 VRA + DKNYFI RF +GLP F KK +++KW+L+K+ QGRQ TD REK KNKPW+LE Sbjct: 61 VRAAAPTDKNYFIGRFVTGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE 119 Query: 485 DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664 DETGQFQ+ G LEG+QSA YYLL+MQ +E AIPAGSWYNFNKVAQYKQLTLEEAEEKMK Sbjct: 120 DETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 179 Query: 665 NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNAS 832 NRRKTADGYQRWMMKAANNGPA FGEV+ ++KESG GG RGRKK+S GDE+EGN S Sbjct: 180 NRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGGRGRKKSSGGDEEEGNVS 237 Query: 833 DHGXXXXXXXXXRKNRLGLN-KRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDD 1009 D G RK+RLGLN K HEEIFTDDD Sbjct: 238 DRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 297 Query: 1010 EAVGNDPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1186 EAVGNDPEERED LAPEIPAPPEIKQ Sbjct: 298 EAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDES 357 Query: 1187 XXXXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKR 1366 V V+ + + P RGTP +K +K KR Sbjct: 358 DEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPP-RGTPPAKPSKGKR 416 Query: 1367 KANGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS-----ALXXXXXXXXXXXXXX 1528 K N +SK + + KKVKTE D K K+E +T S A+ Sbjct: 417 KLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSA 476 Query: 1529 XXXXVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSS 1708 VTEDEIRAVL+++K VTTQDLVS+FK+RLK KEDK AFA +LRKISKIQK A + Sbjct: 477 ATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQN 536 Query: 1709 YVVLRER 1729 +VVLRE+ Sbjct: 537 FVVLREK 543 Score = 65.1 bits (157), Expect = 1e-07 Identities = 30/60 (50%), Positives = 44/60 (73%) Frame = +2 Query: 1541 VTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVL 1720 VTEDEIR VL+++K +TT +LV +FK RL EDK +F+ +L+KI+K+QK +VV+ Sbjct: 572 VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKIAKLQKNPGSEKFVVV 631 >ref|XP_003573836.1| PREDICTED: transcription initiation factor IIF subunit alpha-like [Brachypodium distachyon] Length = 530 Score = 474 bits (1219), Expect = e-131 Identities = 273/540 (50%), Positives = 329/540 (60%), Gaps = 7/540 (1%) Frame = +2 Query: 128 SIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNV 307 S+DL+LKP+C CGS SDLYG+ CKH TLC SCGK+MA +R +C C PIT LIREYNV Sbjct: 3 SVDLVLKPACEGCGSPSDLYGTGCKHTTLCSSCGKSMALSRARCLVCSAPITNLIREYNV 62 Query: 308 RACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 RA +S DK + I RF +GLP FSKKKN ++KW+L KEGLQGRQ+TD ++EKY KPW+LE Sbjct: 63 RANASTDKAFSIGRFVTGLPPFSKKKNAENKWSLHKEGLQGRQLTDKMQEKYNRKPWILE 122 Query: 485 DETGQFQFHGQLEGAQS--AQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEK 658 DETGQ+QF G +EG+QS A YYLLMMQG+E A PAGSWYNF+KVAQYKQLTLEEAEEK Sbjct: 123 DETGQYQFQGHMEGSQSATATYYLLMMQGKEFHAFPAGSWYNFSKVAQYKQLTLEEAEEK 182 Query: 659 MKNRRKTADGYQRWMMKAANNGPAAFG-EVERFDDKESGSGGTRGRKKTSGDEDEGNASD 835 M R+ +A GY+RWMMKAA NGPAAFG ++++ + G + R K D +EGN SD Sbjct: 183 MNKRKTSATGYERWMMKAATNGPAAFGSDIKKLEPTNDGEKES-ARPKKGKDNEEGNNSD 241 Query: 836 HGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEA 1015 G RK+RLGL+KRG+ HEE FTDDDEA Sbjct: 242 KGEENEEDEAARKDRLGLSKRGM-DDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300 Query: 1016 VGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1195 V DPEER DLAPEIPAPPEIKQ Sbjct: 301 VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRASGQNESDADEDD 360 Query: 1196 XXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPA-ASGPNRGTPTSKSAKTKRKA 1372 SPVL V+ +SP+KP +SG R TP + +K KRK+ Sbjct: 361 EDDDDDES-----SPVLAPKQNDQPKDEPVD-NSPAKPTPSSGHARSTPPASKSKQKRKS 414 Query: 1373 NGDESKPTNGAPLKKVKTETDVKPG--KDETPSTAKNSALXXXXXXXXXXXXXXXXXXVT 1546 GD++K + A KK K E D K K+E PS+ K+++ VT Sbjct: 415 GGDDAKTSGSAASKKAKVEPDTKTSSIKEEAPSSLKHTS------KASASSRNANVSPVT 468 Query: 1547 EDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726 EDEIR VLL PVTTQDLVS+FKSRL+ EDK AFAE+L+KISKIQKT +G +YVVLRE Sbjct: 469 EDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKT-NGHNYVVLRE 527 >gb|AAX95773.1| putative transcription initiation factor [Oryza sativa Japonica Group] gi|78708004|gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] Length = 531 Score = 472 bits (1215), Expect = e-130 Identities = 270/539 (50%), Positives = 327/539 (60%), Gaps = 6/539 (1%) Frame = +2 Query: 128 SIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNV 307 S DL+LK +C CGS SDLYG+SCKH TLC SCGK+MA + +C C PIT LIREYNV Sbjct: 3 SADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREYNV 62 Query: 308 RACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484 RA ++ DK++ I RF +GLP FSKKK+ ++KW+L KEGLQGRQ+ + +REKY KPW+LE Sbjct: 63 RANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILE 122 Query: 485 DETGQFQFHGQLEGAQS--AQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEK 658 DETGQ+Q+ GQ+EG+QS A YYLLMM G+E A PAGSWYNF+K+AQYKQLTLEEAEEK Sbjct: 123 DETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAEEK 182 Query: 659 MKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDH 838 M R+ +A GY+RWMMKAA NGPAAFG + + +G+ R K + +EGN SD Sbjct: 183 MNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNSDK 242 Query: 839 GXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAV 1018 G RKNRL LNK+ + HEE FTDDDEAV Sbjct: 243 GEEDEEEEAARKNRLALNKKSM-DDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAV 301 Query: 1019 GNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198 DPEER DLAPEIPAPPEIKQ Sbjct: 302 DIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNESDADEDDE 361 Query: 1199 XXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKA-N 1375 SPVL V+ +SP+KP SG RGTP + +K KRK+ Sbjct: 362 DDDEDES-----SPVLAPKQKDQPKDEPVD-NSPAKPTPSGHARGTPPASKSKQKRKSGG 415 Query: 1376 GDESKPTNGAPLKKVKTETDVKP--GKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTE 1549 GD+SK + GA KK K E+D KP KDETPS++K ++ VTE Sbjct: 416 GDDSKASGGAASKKAKVESDTKPSVAKDETPSSSKPAS-----KATAASKTSANVSPVTE 470 Query: 1550 DEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726 DEIR VLL PVTTQDLVS+FKSRL+ EDK AFAE+L+KISKIQKT +G +YVVLR+ Sbjct: 471 DEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKT-NGHNYVVLRD 528