BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00007471
         (2109 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006352364.1| PREDICTED: transcription initiation factor I...   791   0.0  
ref|XP_006352367.1| PREDICTED: transcription initiation factor I...   785   0.0  
ref|XP_004250258.1| PREDICTED: transcription initiation factor I...   774   0.0  
emb|CBI33123.3| unnamed protein product [Vitis vinifera]              598   e-168
ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   590   e-166
ref|XP_006467340.1| PREDICTED: transcription initiation factor I...   587   e-165
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   586   e-164
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...   586   e-164
ref|XP_002322538.2| transcription initiation factor IIF alpha su...   575   e-161
ref|XP_002308775.1| transcription initiation factor IIF alpha su...   563   e-157
ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu...   549   e-153
gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus...   548   e-153
ref|XP_006586768.1| PREDICTED: transcription initiation factor I...   548   e-153
ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp...   535   e-149
ref|XP_002529600.1| tfiif-alpha, putative [Ricinus communis] gi|...   525   e-146
ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutr...   522   e-145
gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana]              506   e-140
sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation fa...   506   e-140
ref|XP_003573836.1| PREDICTED: transcription initiation factor I...   474   e-131
gb|AAX95773.1| putative transcription initiation factor [Oryza s...   472   e-130

>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Solanum tuberosum]
            gi|565371548|ref|XP_006352365.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Solanum tuberosum] gi|565371550|ref|XP_006352366.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha-like isoform X3 [Solanum tuberosum]
          Length = 538

 Score =  791 bits (2044), Expect = 0.0
 Identities = 410/538 (76%), Positives = 417/538 (77%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTP+TRLIREYN
Sbjct: 1    MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            VRACSSNDKN+FIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
Sbjct: 61   VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 120

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQFHG LEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
Sbjct: 121  DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844
            NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKE GSGGTRGRKKTSGDEDEGNASDHG 
Sbjct: 181  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD 240

Query: 845  XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024
                    RKNRLGLNKRG+                          HEEIFTDDDEAVGN
Sbjct: 241  EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN 300

Query: 1025 DPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1204
            DPEEREDLAPEIPAPPEIKQ                                        
Sbjct: 301  DPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDAEDD 360

Query: 1205 XXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDE 1384
                     ISPVL            VET+SP KPAASG NRGTPTSKSAKTKRKANGDE
Sbjct: 361  DDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDE 420

Query: 1385 SKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRA 1564
            SKPT+GAPLKKVKTETD KPGKDETPS+AKNSAL                  VTEDEIRA
Sbjct: 421  SKPTSGAPLKKVKTETDAKPGKDETPSSAKNSALPKGASSSSKTAPSPATGPVTEDEIRA 480

Query: 1565 VLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRERTNQ 1738
            VLLQRKPVTTQDLVSQFKSRLKCKEDK AFAEVLRKISKIQKT +GSSYVVLRERTNQ
Sbjct: 481  VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRERTNQ 538


>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X4 [Solanum tuberosum]
          Length = 535

 Score =  785 bits (2028), Expect = 0.0
 Identities = 407/535 (76%), Positives = 414/535 (77%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTP+TRLIREYN
Sbjct: 1    MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            VRACSSNDKN+FIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
Sbjct: 61   VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 120

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQFHG LEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
Sbjct: 121  DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844
            NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKE GSGGTRGRKKTSGDEDEGNASDHG 
Sbjct: 181  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD 240

Query: 845  XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024
                    RKNRLGLNKRG+                          HEEIFTDDDEAVGN
Sbjct: 241  EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN 300

Query: 1025 DPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1204
            DPEEREDLAPEIPAPPEIKQ                                        
Sbjct: 301  DPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDAEDD 360

Query: 1205 XXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDE 1384
                     ISPVL            VET+SP KPAASG NRGTPTSKSAKTKRKANGDE
Sbjct: 361  DDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDE 420

Query: 1385 SKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRA 1564
            SKPT+GAPLKKVKTETD KPGKDETPS+AKNSAL                  VTEDEIRA
Sbjct: 421  SKPTSGAPLKKVKTETDAKPGKDETPSSAKNSALPKGASSSSKTAPSPATGPVTEDEIRA 480

Query: 1565 VLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            VLLQRKPVTTQDLVSQFKSRLKCKEDK AFAEVLRKISKIQKT +GSSYVVLRER
Sbjct: 481  VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 535


>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Solanum lycopersicum]
          Length = 534

 Score =  774 bits (1998), Expect = 0.0
 Identities = 403/535 (75%), Positives = 412/535 (77%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTP+TRLIREYN
Sbjct: 1    MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            VRACSSNDKN+FIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
Sbjct: 61   VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 120

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQFHG LEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
Sbjct: 121  DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844
            NRRKTADGYQRWMMKAANNGPAAFGE+ERFDDKE GSGGTRGRKKTSGDEDEGNASDHG 
Sbjct: 181  NRRKTADGYQRWMMKAANNGPAAFGELERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD 240

Query: 845  XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024
                    RKNRLGLNKRG+                          HEEIFTDDDEAVGN
Sbjct: 241  EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN 300

Query: 1025 DPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1204
            DPEEREDLAPEIPAPPEIKQ                                        
Sbjct: 301  DPEEREDLAPEIPAPPEIKQ-DEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDEDD 359

Query: 1205 XXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDE 1384
                     ISPVL            VET+SP K AASG NRGTPTSKSAKTKRKANGDE
Sbjct: 360  DDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKAAASGSNRGTPTSKSAKTKRKANGDE 419

Query: 1385 SKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRA 1564
            SKPT+GAPLKKVKTE D KPGKDETPS+AKN+AL                  VTEDEIRA
Sbjct: 420  SKPTSGAPLKKVKTEADAKPGKDETPSSAKNTALPKGASSSSKTAPSSATGPVTEDEIRA 479

Query: 1565 VLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            VLLQRKPVTTQDLVSQFKSRLKCKEDK AFAEVLRKISKIQKT +GSSYVVLRER
Sbjct: 480  VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 534


>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  598 bits (1541), Expect = e-168
 Identities = 323/541 (59%), Positives = 367/541 (67%), Gaps = 6/541 (1%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL+LKPSCS CGS++DLYGS+CKH+TLCLSCGK MAE   KCY+CGTP+TRLIREYN
Sbjct: 1    MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VR  SS DKNYFI RF +GLP FSKKKN D+KW+L KEGLQGRQV+D LREKYKNKPWLL
Sbjct: 61   VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661
            EDETGQ+Q+HGQLEG+QSA YYLLMMQG+E  AIPAGSWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 121  EDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 662  KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG--SGGTRGRKKTSGDEDEGNASD 835
            KNRR+TADGYQRWMMKAANNGPAAFGEVE+ DDKE+G  +GG RGRKK +GDE+EGN SD
Sbjct: 181  KNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSD 240

Query: 836  HGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEA 1015
                       RKNRLGLNKR                            HEEIFTDDDEA
Sbjct: 241  KAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEA 300

Query: 1016 VGNDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192
            VGNDPEEREDLAPE+PAPPEIKQ                                     
Sbjct: 301  VGNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDA 360

Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKA 1372
                         +SPVL             + +SP K A +      PTSKS+K KRK+
Sbjct: 361  EDDDDDEEEDEIGLSPVLAPKQKDVPKEEPAD-NSPMKSATASARSTPPTSKSSKGKRKS 419

Query: 1373 NGDESKPTNGAPLKKVKTETDVK-PGKDETPSTAKNSAL-XXXXXXXXXXXXXXXXXXVT 1546
            NGD+ K TNG P KKVKTE + K   KDE PS +K +A                    VT
Sbjct: 420  NGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVT 479

Query: 1547 EDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726
            EDEIRAVLLQ+ PVTTQDLV++FK+RLK +EDK AFA++LR+ISKIQKT +G +YVVLR+
Sbjct: 480  EDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKT-NGPNYVVLRD 538

Query: 1727 R 1729
            +
Sbjct: 539  K 539


>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Vitis vinifera]
          Length = 534

 Score =  590 bits (1522), Expect = e-166
 Identities = 319/536 (59%), Positives = 363/536 (67%), Gaps = 6/536 (1%)
 Frame = +2

Query: 140  ILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNVRACS 319
            +LKPSCS CGS++DLYGS+CKH+TLCLSCGK MAE   KCY+CGTP+TRLIREYNVR  S
Sbjct: 1    MLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNS 60

Query: 320  SNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETG 496
            S DKNYFI RF +GLP FSKKKN D+KW+L KEGLQGRQV+D LREKYKNKPWLLEDETG
Sbjct: 61   SGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETG 120

Query: 497  QFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 676
            Q+Q+HGQLEG+QSA YYLLMMQG+E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRR+
Sbjct: 121  QYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRR 180

Query: 677  TADGYQRWMMKAANNGPAAFGEVERFDDKESG--SGGTRGRKKTSGDEDEGNASDHGXXX 850
            TADGYQRWMMKAANNGPAAFGEVE+ DDKE+G  +GG RGRKK +GDE+EGN SD     
Sbjct: 181  TADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEED 240

Query: 851  XXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGNDP 1030
                  RKNRLGLNKR                            HEEIFTDDDEAVGNDP
Sbjct: 241  EEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDP 300

Query: 1031 EEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1207
            EEREDLAPE+PAPPEIKQ                                          
Sbjct: 301  EEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDAEDDDD 360

Query: 1208 XXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGDES 1387
                    +SPVL             + +SP K A +      PTSKS+K KRK+NGD+ 
Sbjct: 361  DEEEDEIGLSPVLAPKQKDVPKEEPAD-NSPMKSATASARSTPPTSKSSKGKRKSNGDDM 419

Query: 1388 KPTNGAPLKKVKTETDVK-PGKDETPSTAKNSAL-XXXXXXXXXXXXXXXXXXVTEDEIR 1561
            K TNG P KKVKTE + K   KDE PS +K +A                    VTEDEIR
Sbjct: 420  KTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTEDEIR 479

Query: 1562 AVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            AVLLQ+ PVTTQDLV++FK+RLK +EDK AFA++LR+ISKIQKT +G +YVVLR++
Sbjct: 480  AVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKT-NGPNYVVLRDK 534


>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Citrus sinensis]
            gi|568825955|ref|XP_006467341.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Citrus sinensis]
          Length = 538

 Score =  587 bits (1513), Expect = e-165
 Identities = 314/539 (58%), Positives = 360/539 (66%), Gaps = 4/539 (0%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL+LKP CS CGS +DLYGS+CKH+TLCL+CGK MAE + KC++CG  +TRLIREYN
Sbjct: 1    MSFDLLLKPQCSGCGSQADLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VR  +S+DKNYFI RF SGLP FSKKKN ++KWTL K+GLQGRQVTDTLREKYKNKPW+L
Sbjct: 61   VRPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWML 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661
            EDETGQ Q+ G LEG+QSA YYLL+M  +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 121  EDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 662  KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHG 841
            KNRRKTADGY+RWMMKAANNG AAFGEVE+ DDKES   G RGR K SGDEDEGN SD G
Sbjct: 181  KNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRG 240

Query: 842  XXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVG 1021
                     RKNRLGLNKRG                           HEEIFTDDDEAVG
Sbjct: 241  EEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300

Query: 1022 NDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198
            NDPEEREDLAPE+PAPPEIKQ                                       
Sbjct: 301  NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDD 360

Query: 1199 XXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRKAN 1375
                        SP+L               +SP+KPA SG  R TP TSKSAK KRK+N
Sbjct: 361  DEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSN 420

Query: 1376 GDESKPTNGAPLKKVKTETDVK-PGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTED 1552
            GD+++  +GAPLKKVKTE + K   +DE  S +K+SA                   VT +
Sbjct: 421  GDDARAPSGAPLKKVKTENETKSSARDENVSASKSSA-PAKGASSSRTGSTSASGPVTAE 479

Query: 1553 EIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            EIRAVLLQ+ PVTTQDLV++FK RL+  ED+TAFA++L++ISKIQKT   S+YVVLRE+
Sbjct: 480  EIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 533

 Score =  586 bits (1511), Expect = e-164
 Identities = 317/538 (58%), Positives = 368/538 (68%), Gaps = 4/538 (0%)
 Frame = +2

Query: 128  SIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNV 307
            ++DL+LK SCS CGS++DLYGS+CKH+TLCLSCGK MAE   KC++CG  ++RLIREYNV
Sbjct: 3    TMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNV 62

Query: 308  RACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            RA SS+DKNYFI RF +GLP FSKKKN ++KW+LQKEGLQGRQ+TD LREKYKN+PWLLE
Sbjct: 63   RASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLE 122

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQ+ G LEG+QSA YYLL++QG+E  AIPA SWYNFNKVAQYKQLTLEEAEEKM+
Sbjct: 123  DETGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMR 182

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGX 844
            NRRKTADGY+RWMMKAANNGPAAFGEVE+ DDK+SG+   RGRKK +GD++EGN SD G 
Sbjct: 183  NRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRGD 242

Query: 845  XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024
                    RKNRLGLNKRG                           HEEIFTDDDEAVGN
Sbjct: 243  EDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVGN 302

Query: 1025 DPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1201
            D EEREDLAPE+PAPPEIKQ                                        
Sbjct: 303  DREEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGRAGGLNDSDAEDDD 362

Query: 1202 XXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRKANG 1378
                      ISPVL               +SP+KP  S  ++GTP TSKSAK KRK N 
Sbjct: 363  DDDDMDEDVSISPVLAPKQTPKEEP---ADNSPAKPMTSASSKGTPSTSKSAKGKRKLNS 419

Query: 1379 DESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDE 1555
            DE+K TN AP KKVKTE ++KP  K+E+  T+K+SA                   VTE+E
Sbjct: 420  DEAKQTNVAPQKKVKTENELKPTVKEESAPTSKSSA---TPKAAPPSAKTGSTSPVTEEE 476

Query: 1556 IRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            IRAVLLQ  PVTTQDLV++FKSRLK  EDK AFA++LR+ISKIQKT SGSSYVVLR++
Sbjct: 477  IRAVLLQNGPVTTQDLVARFKSRLKSSEDKKAFADILRRISKIQKT-SGSSYVVLRDK 533


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
            gi|567915083|ref|XP_006449855.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552465|gb|ESR63094.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552466|gb|ESR63095.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score =  586 bits (1510), Expect = e-164
 Identities = 314/539 (58%), Positives = 359/539 (66%), Gaps = 4/539 (0%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL+LKP CS CGS  DLYGS+CKH+TLCL+CGK MAE + KC++CG  +TRLIREYN
Sbjct: 1    MSFDLLLKPQCSGCGSQVDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VR  +S+DKNYFI RF SGLP FSKKKN ++KWTL K+GLQGRQVTDTLREKYKNKPW+L
Sbjct: 61   VRPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWML 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661
            EDETGQ Q+ G LEG+QSA YYLL+M  +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 121  EDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 662  KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHG 841
            KNRRKTADGY+RWMMKAANNG AAFGEVE+ DDKES   G RGR K SGDEDEGN SD G
Sbjct: 181  KNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRG 240

Query: 842  XXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVG 1021
                     RKNRLGLNKRG                           HEEIFTDDDEAVG
Sbjct: 241  EEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300

Query: 1022 NDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198
            NDPEEREDLAPE+PAPPEIKQ                                       
Sbjct: 301  NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDD 360

Query: 1199 XXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRKAN 1375
                        SP+L               +SP+KPA SG  R TP TSKSAK KRK+N
Sbjct: 361  DEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSN 420

Query: 1376 GDESKPTNGAPLKKVKTETDVK-PGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTED 1552
            GD+++  +GAPLKKVKTE + K   +DE  S +K+SA                   VT +
Sbjct: 421  GDDARAPSGAPLKKVKTENETKSSARDENVSASKSSA-PAKGASSSRTGSTSASGPVTAE 479

Query: 1553 EIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            EIRAVLLQ+ PVTTQDLV++FK RL+  ED+TAFA++L++ISKIQKT   S+YVVLRE+
Sbjct: 480  EIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538


>ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein
            [Populus trichocarpa] gi|550320589|gb|EEF04299.2|
            transcription initiation factor IIF alpha subunit family
            protein [Populus trichocarpa]
          Length = 540

 Score =  575 bits (1481), Expect = e-161
 Identities = 310/542 (57%), Positives = 363/542 (66%), Gaps = 7/542 (1%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL+LKPSCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CGT ++RLIREYN
Sbjct: 1    MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VRA +S+DKNYFI RF +GLP FSKKKN ++KW+L KEG+ GRQ+TD LREK+KNKPWLL
Sbjct: 61   VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSW--YNFNKVAQYKQLTLEEAEE 655
            EDETGQ Q+ G LEG+QSA YYLLMM G+E  AIPAGSW  YNFNKVA YKQLTLEEAEE
Sbjct: 121  EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEE 180

Query: 656  KMKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKES-GSGGTRGRKKTSGDEDEGNAS 832
            KMKNRRKTADGY+RWMMKAANNG AAFGEVE+ DDKE   +GG  GR+K SGD+DEGN S
Sbjct: 181  KMKNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVS 240

Query: 833  DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012
            D G         RK+RLGLNK+G                           HEEIFTDDDE
Sbjct: 241  DRGEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300

Query: 1013 AVGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192
            AV  DPEEREDLAPE+PAPPEIKQ                                    
Sbjct: 301  AVAIDPEEREDLAPEVPAPPEIKQ-DEDDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359

Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRK 1369
                         ISPVL                SP+KP  SG  +GTP TSKSAK KRK
Sbjct: 360  VEDDDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKGKRK 419

Query: 1370 ANGDESKPTNGAPLKKVKTETDVKPG--KDETPSTAKNSALXXXXXXXXXXXXXXXXXXV 1543
             NG+++K +NGAP+KKVKTE +VKP   ++ +P+T   +                    V
Sbjct: 420  LNGEDAKSSNGAPVKKVKTENEVKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPV 479

Query: 1544 TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLR 1723
            TE+EIRAVLLQ  PVTTQDLV++FKSRL+  EDK AFA++LR+ISKIQKT SGS+YVVLR
Sbjct: 480  TEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKT-SGSNYVVLR 538

Query: 1724 ER 1729
            ++
Sbjct: 539  DK 540


>ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein
            [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
            transcription initiation factor IIF alpha subunit family
            protein [Populus trichocarpa]
          Length = 541

 Score =  563 bits (1450), Expect = e-157
 Identities = 306/542 (56%), Positives = 361/542 (66%), Gaps = 7/542 (1%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL L+PSCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CG  +TRLIREYN
Sbjct: 1    MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VRA +S++KNYFI RF +GLP FSKKKN ++KW+L KEG+ GRQ+TDTLREK+KNKPWLL
Sbjct: 61   VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSW--YNFNKVAQYKQLTLEEAEE 655
            EDETGQFQ+ G LEG+QSA YYLLMM G+E  AIPAGSW  YNFNKVA YKQLTLEEAEE
Sbjct: 121  EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180

Query: 656  KMKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKES-GSGGTRGRKKTSGDEDEGNAS 832
            KMKNRRKTADGY+RWMMKAA+NG AAFGEVE+ DDK+   +GG  GRKK +GD+DEGN S
Sbjct: 181  KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240

Query: 833  DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012
            D G         RK+RLGLNK G                           HEEIFTDDDE
Sbjct: 241  DKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300

Query: 1013 AVGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192
            AV  DPEEREDLAPE+PAPPEIKQ                                    
Sbjct: 301  AVAIDPEEREDLAPEVPAPPEIKQ-DEEDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359

Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRK 1369
                         ISPVL               +SP+KP   G  +GTP TSKSAK KRK
Sbjct: 360  AEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRK 419

Query: 1370 ANGDESKPTNGAPLKKVKTETDVKP--GKDETPSTAKNSALXXXXXXXXXXXXXXXXXXV 1543
             N D++K +NGAP+KKVKTE +VKP   ++ +P+T   +                    V
Sbjct: 420  LNADDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPV 479

Query: 1544 TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLR 1723
            TE+EIRAVLLQ  PVTTQDLV++FKSRL+  EDK AFA++LR+ISKIQKT SGS++VVLR
Sbjct: 480  TEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKT-SGSNFVVLR 538

Query: 1724 ER 1729
            ++
Sbjct: 539  DK 540


>ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa]
            gi|550335193|gb|ERP58675.1| hypothetical protein
            POPTR_0006s01070g [Populus trichocarpa]
          Length = 536

 Score =  549 bits (1415), Expect = e-153
 Identities = 302/542 (55%), Positives = 357/542 (65%), Gaps = 7/542 (1%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL L+PSCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CG  +TRLIREYN
Sbjct: 1    MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VRA +S++KNYFI RF +GLP FSKKKN ++KW+L KEG+ GRQ+TDTLREK+KNKPWLL
Sbjct: 61   VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSW--YNFNKVAQYKQLTLEEAEE 655
            EDETGQFQ+ G LEG+QSA YYLLMM G+E  AIPAGSW  YNFNKVA YKQLTLEEAEE
Sbjct: 121  EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180

Query: 656  KMKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKES-GSGGTRGRKKTSGDEDEGNAS 832
            KMKNRRKTADGY+RWMMKAA+NG AAFGEVE+ DDK+   +GG  GRKK +GD+DEGN S
Sbjct: 181  KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240

Query: 833  DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012
            D G         RK+RLGLNK G                           HEEIFTDDDE
Sbjct: 241  DKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300

Query: 1013 AVGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192
            AV  DPEEREDLAPE+PAPPEIKQ                                    
Sbjct: 301  AVAIDPEEREDLAPEVPAPPEIKQ-DEEDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359

Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTP-TSKSAKTKRK 1369
                         ISPVL               +SP+KP   G  +GTP TSKSAK KRK
Sbjct: 360  AEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRK 419

Query: 1370 ANGDESKPTNGAPLKKVKTETDVKP--GKDETPSTAKNSALXXXXXXXXXXXXXXXXXXV 1543
             N D++K +NGAP+KK     +VKP   ++ +P+T   +                    V
Sbjct: 420  LNADDAKTSNGAPVKK-----EVKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPV 474

Query: 1544 TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLR 1723
            TE+EIRAVLLQ  PVTTQDLV++FKSRL+  EDK AFA++LR+ISKIQKT SGS++VVLR
Sbjct: 475  TEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKT-SGSNFVVLR 533

Query: 1724 ER 1729
            ++
Sbjct: 534  DK 535


>gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris]
          Length = 540

 Score =  548 bits (1413), Expect = e-153
 Identities = 303/544 (55%), Positives = 360/544 (66%), Gaps = 9/544 (1%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MSIDL+LKP+C  CGS++DLYGS+CKH+TLCL+CGK MAE + KC++CG  +TRLIREY+
Sbjct: 1    MSIDLLLKPTCGGCGSTTDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGATVTRLIREYS 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VRA S +DK+YFI RF SGLP FSKKK+ ++KW+LQKEGLQ RQVTD LREKYKNKPWLL
Sbjct: 61   VRASSGSDKHYFIGRFVSGLPDFSKKKSAENKWSLQKEGLQSRQVTDALREKYKNKPWLL 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661
            EDETGQ QF G LEGAQSA YYLLMM+ +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 121  EDETGQSQFQGHLEGAQSATYYLLMMERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 662  KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG-SGGTRGRKKTSGDEDEGNASDH 838
            KNR+KTADGY+RWMMKAANNGPAAFGE  RFD+KES   GG + RKKT  DE EG+ SD 
Sbjct: 181  KNRKKTADGYERWMMKAANNGPAAFGERGRFDEKESNVGGGGKNRKKTDEDE-EGHVSDK 239

Query: 839  GXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAV 1018
            G         R++RLGLNK+G                           HEEIFTDDDEAV
Sbjct: 240  GEEDEDDEVARRSRLGLNKKGGDDDEEGPRGGDLDQDDDDIEKGDDWEHEEIFTDDDEAV 299

Query: 1019 GNDPEEREDLAPEIPAPPEIKQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1195
            GNDPEEREDLAPE+PAPPEIKQ                                      
Sbjct: 300  GNDPEEREDLAPEVPAPPEIKQDDEDEDEDNEEGGGLSKSGKELKKLLRTSGLNESDAED 359

Query: 1196 XXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGT-PTSKSAKTKRKA 1372
                        + PV+             + S PSKPA +G  RGT  TSK +K KRK 
Sbjct: 360  DDDDDDVDDEAGVPPVIASKPKDAPKEEPADNS-PSKPAVTGTARGTLSTSKPSKGKRKL 418

Query: 1373 NGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS----ALXXXXXXXXXXXXXXXXX 1537
            N +E+K  NGAP KKVK E + K   KDE  ST+KN+     +                 
Sbjct: 419  N-EETKAANGAPPKKVKIENEPKSTVKDENGSTSKNNTPSKGVPPTPSSKGGSSSPIASG 477

Query: 1538 XVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVV 1717
             V+E+EIRAVL+Q+ P+TTQDLV++F++RL+C EDK AFA++L++ISKIQKT + SSYV+
Sbjct: 478  PVSEEEIRAVLMQKTPLTTQDLVAKFRARLRCPEDKKAFADILKRISKIQKT-NASSYVI 536

Query: 1718 LRER 1729
            LR+R
Sbjct: 537  LRDR 540


>ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Glycine max]
          Length = 536

 Score =  548 bits (1411), Expect = e-153
 Identities = 296/539 (54%), Positives = 348/539 (64%), Gaps = 4/539 (0%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS DL LK SCS CGS++DLYGS+CKH+TLCL CGK MA  R KC +CG  +TRLIREYN
Sbjct: 1    MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 481
            VRA S NDKNYFI RF +GLP FSKKK+ ++KW+LQK+GL GRQ+TDTLREKYKNKPWLL
Sbjct: 61   VRASSPNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL 120

Query: 482  EDETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 661
            EDETGQ QF G LEG+QSA YYLLM + +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 121  EDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180

Query: 662  KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHG 841
            KNR+KTADGYQRWMMKAANNGPAAFGE  +FDD ES +GG R  KKT  ++DEG+ SD G
Sbjct: 181  KNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDNESNTGGGRSHKKTD-EDDEGHVSDKG 239

Query: 842  XXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVG 1021
                     RK+RLGLNKR                            HEEIFTDDDEAVG
Sbjct: 240  EEDEEEESERKSRLGLNKRAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVG 299

Query: 1022 NDPEEREDLAPEIPAPPEIKQ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1192
            NDPEEREDLAPE+PAPPEIKQ                                       
Sbjct: 300  NDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGEGLSKSGKELKKLLGKASGLNESDAED 359

Query: 1193 XXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKA 1372
                         + PV+            ++ S PSKP A+GP RGTP+SKS+K KRK 
Sbjct: 360  DDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNS-PSKPTATGPARGTPSSKSSKGKRKL 418

Query: 1373 NGDESKPTNGAPLKKVKTETDVKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTED 1552
            N +E+KP+N A  KK    +        + S+A                       V+E+
Sbjct: 419  N-EETKPSNTATPKKEPKLSAKDVNGSASKSSAPPKGTPPLSSKGGSSTTTTASGPVSEE 477

Query: 1553 EIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            EIRAVL Q+ PVTTQDLV++FK+RL+C EDK AFAE+L++ISKIQKT +G+SYV+LR++
Sbjct: 478  EIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRDK 536


>ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata]
            gi|297318500|gb|EFH48922.1| mutant TFIIF-alpha
            [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score =  535 bits (1378), Expect = e-149
 Identities = 300/545 (55%), Positives = 345/545 (63%), Gaps = 11/545 (2%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS  L LKP+C  CGS SDLYGSSC+H+TLCL CG+ MAE + KC +CGT +TRLIREYN
Sbjct: 1    MSNCLQLKPACMGCGSQSDLYGSSCRHMTLCLKCGRTMAENKAKCLDCGTVLTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            VRA +  DKNYFI RF +GLP F KK +++KW+L+K+  QGRQ TD  REK KNKPW+LE
Sbjct: 61   VRAAAPTDKNYFIGRFVTGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE 119

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQ+ G LEG+QSA YYLL+MQ +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMK
Sbjct: 120  DETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 179

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNAS 832
            NRRKTADGYQRWMMKAANNGPA FGEV+  +DKESG    GG RGRKK+S GDEDEGN S
Sbjct: 180  NRRKTADGYQRWMMKAANNGPALFGEVD--NDKESGGSSGGGGRGRKKSSGGDEDEGNVS 237

Query: 833  DHGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDE 1012
            D G         RK+RLGLNK+                            HEEIFTDDDE
Sbjct: 238  DRGEEDEEEEASRKSRLGLNKKSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 297

Query: 1013 AVGNDPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1189
            AVGNDPEERED LAPEIPAPPEIKQ                                   
Sbjct: 298  AVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLNESD 357

Query: 1190 XXXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRK 1369
                            PV             VE ++P+KP  SGP+RGTP +K +K KRK
Sbjct: 358  EDDDDDSDDEEETNFGPVTNSKQKEVAKEEPVE-NAPAKPTPSGPSRGTPPAKPSKGKRK 416

Query: 1370 ANGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS-----ALXXXXXXXXXXXXXXX 1531
             N  +SK  + +  KKVKTE D K   K+E  +T   S     A+               
Sbjct: 417  LNDGDSKKPSSSVQKKVKTENDPKSSVKEERANTVSKSNTPTKAVKAEPASAPAASSSAA 476

Query: 1532 XXXVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSY 1711
               VTEDEIRAVL+++K VTTQDLVS+FK+RLK KEDK AFA +LRKISKIQK A   ++
Sbjct: 477  TGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNF 536

Query: 1712 VVLRE 1726
            VVLRE
Sbjct: 537  VVLRE 541



 Score = 66.2 bits (160), Expect = 5e-08
 Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = +2

Query: 1541 VTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSY-VV 1717
            VTEDE+R+VL++ K +TT +LV +FK RL  +E+K  FA +L+KI+K+QK A    Y +V
Sbjct: 557  VTEDELRSVLMETKQLTTLELVMRFKERLTTREEKDTFAHILKKIAKLQKNAGSLKYFLV 616

Query: 1718 LRE 1726
            LRE
Sbjct: 617  LRE 619


>ref|XP_002529600.1| tfiif-alpha, putative [Ricinus communis] gi|223530933|gb|EEF32792.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 584

 Score =  525 bits (1351), Expect = e-146
 Identities = 293/585 (50%), Positives = 353/585 (60%), Gaps = 50/585 (8%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLI---- 292
            MS+DL LK SCS CGS++DLYGS+CKH+TLCL+CGK MAE R KC++CG  IT+ +    
Sbjct: 1    MSVDLQLKSSCSECGSTTDLYGSNCKHMTLCLNCGKTMAENRRKCFDCGVTITQRLLGLG 60

Query: 293  ----------------------------------------REYNVRACSSNDKNYFIARF 352
                                                    +EYNVRA  S+DKNYFI RF
Sbjct: 61   SLSWAGHQVHVSLPINQFLNAGVDPKEISLPHEFILNWDTKEYNVRASPSSDKNYFIGRF 120

Query: 353  ASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGQLEGA 529
             +GLP FSKKKN ++KW++ KEGLQGRQ+TD LREK+KNKPWLLEDETGQ+Q+HG LEG+
Sbjct: 121  VTGLPIFSKKKNAENKWSIHKEGLQGRQLTDALREKFKNKPWLLEDETGQYQYHGHLEGS 180

Query: 530  QSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMK 709
            QSA YYLL++QG+E  AIPA SWYNFNKVAQYK LTLEEAEEKMKNRRKTADGY+RWMMK
Sbjct: 181  QSATYYLLILQGKEFVAIPAASWYNFNKVAQYKMLTLEEAEEKMKNRRKTADGYERWMMK 240

Query: 710  AANNGPAAFGEVERFDDKESGSGGTRGRKKTSG-DEDEGNASDHGXXXXXXXXXRKNRLG 886
            AANNGPAAFGE+E+ DDK+  +   RGR+KT+G D+DEG  SD G         RKNRLG
Sbjct: 241  AANNGPAAFGEMEKPDDKDVRTTSGRGRRKTAGDDDDEGKISDKGEEDEEEEMSRKNRLG 300

Query: 887  LNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGNDPEEREDLAPEIPA 1066
            LN++G                           HEEIFTDDDEAVGNDPEER+DL PE+PA
Sbjct: 301  LNRQGGGDDDEGPRGGDHDMDDDDVEKGDDWEHEEIFTDDDEAVGNDPEERQDLGPELPA 360

Query: 1067 PPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISPVL 1246
            PPEIKQ                                                 +SPVL
Sbjct: 361  PPEIKQDEDDEDEENEEGGLSKSGKELKALLGRSGGLDDTDAEDDDDDDMDEDTGLSPVL 420

Query: 1247 XXXXXXXXXXXXVETSSPSKPAASGPNRGT-PTSKSAKTKRKANGDESKPTNGAPLKKVK 1423
                           +SP+KP  S   +G    SKSAK KRK NGD+ K +N +P KKVK
Sbjct: 421  AQKQKDAPIKEEPGDNSPAKPMHSSSAKGALSASKSAKGKRKTNGDDGKTSNVSPQKKVK 480

Query: 1424 TETDVK---PGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTEDEIRAVLLQRKPVTT 1594
            TE + K     ++   S +K+SA                   VT++EI+AVLLQ  PVTT
Sbjct: 481  TENESKHIVKEENVPTSKSKSSANPKGAAASLRTESTSSTGFVTDEEIKAVLLQNGPVTT 540

Query: 1595 QDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRER 1729
            QDLV++FKSRLK +EDK AF   L++IS+IQKT SG SYVVLR++
Sbjct: 541  QDLVAKFKSRLKTREDKEAFTHTLKRISRIQKT-SGGSYVVLRDK 584


>ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum]
            gi|557097757|gb|ESQ38193.1| hypothetical protein
            EUTSA_v10028564mg [Eutrema salsugineum]
          Length = 542

 Score =  522 bits (1345), Expect = e-145
 Identities = 292/541 (53%), Positives = 337/541 (62%), Gaps = 10/541 (1%)
 Frame = +2

Query: 137  LILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNVRAC 316
            L LK  C RC S SDLYGSSC+H+TLC  CGK MAE + KC +CGT +TRLIREYNVRA 
Sbjct: 6    LTLKSECMRCKSPSDLYGSSCRHMTLCFKCGKTMAENKSKCIDCGTIVTRLIREYNVRAA 65

Query: 317  SSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETG 496
            +  DKNYFI RF SGLP F KK +++KW+L+K+  QGRQ TD  REK KNKPW+LEDETG
Sbjct: 66   APTDKNYFIGRFVSGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDETG 124

Query: 497  QFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 676
            QFQ+ G LEG+QSA YYLL+MQ +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK
Sbjct: 125  QFQYQGHLEGSQSATYYLLVMQNKEFIAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 184

Query: 677  TADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNASDHGX 844
            TADGYQRWMMKAANNGPA FGE E  +DKE+G    GG RGRKK+S GDE+EGN SD G 
Sbjct: 185  TADGYQRWMMKAANNGPALFGETE--NDKEAGGSSGGGGRGRKKSSGGDEEEGNVSDRGE 242

Query: 845  XXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAVGN 1024
                    RK+RLGLNK+                            HEEIFTDDDEAVGN
Sbjct: 243  EDEEEEASRKSRLGLNKKSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGN 302

Query: 1025 DPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1201
            DPEERED LAPEIPAPPEIKQ                                       
Sbjct: 303  DPEEREDLLAPEIPAPPEIKQDDDDEENEEEEGGLSKSGKELKKLLGKSNGLNESDEEDD 362

Query: 1202 XXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKANGD 1381
                        P+             VE S+P KPA S  +RGTP++K +K KRK N  
Sbjct: 363  DDSDDDEETNFGPITNSKQKDATKEEPVE-STPPKPAPSVSSRGTPSAKPSKGKRKLNDG 421

Query: 1382 ESKPTNGAPLKKVKTETD-----VKPGKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVT 1546
            ++K  + +  KKVKTE++     VK  K  + S +                       VT
Sbjct: 422  DAKKPSSSVQKKVKTESESKSSSVKEEKSNSISKSNAPTKAVKPESTSAPAASAATGPVT 481

Query: 1547 EDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726
            EDEIR VL+++K VTTQDLVS+FK+RLK KEDK AFAE+LRKISKIQK A   ++VVLRE
Sbjct: 482  EDEIRGVLMEKKQVTTQDLVSRFKARLKTKEDKNAFAEILRKISKIQKNAGSQNFVVLRE 541

Query: 1727 R 1729
            R
Sbjct: 542  R 542


>gb|AAR28013.1| mutant TFIIF-alpha [Arabidopsis thaliana]
          Length = 640

 Score =  506 bits (1303), Expect = e-140
 Identities = 290/547 (53%), Positives = 336/547 (61%), Gaps = 12/547 (2%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS  L L  SC  CGS SDLYGSSC+H+TLCL CG+ MA+ + KC+ECGT +TRLIREYN
Sbjct: 1    MSNCLQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            VRA +  DKNYFI RF +GLP F KK +++KW+L+K+  QGRQ TD  REK KNKPW+LE
Sbjct: 61   VRAAAPTDKNYFIGRFVTGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE 119

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQ+ G LEG+QSA YYLL+MQ +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMK
Sbjct: 120  DETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 179

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNAS 832
            NRRKTADGYQRWMMKAANNGPA FGEV+  ++KESG    GG RGRKK+S GDE+EGN S
Sbjct: 180  NRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGGRGRKKSSGGDEEEGNVS 237

Query: 833  DHGXXXXXXXXXRKNRLGLN-KRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDD 1009
            D G         RK+RLGLN K                             HEEIFTDDD
Sbjct: 238  DRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 297

Query: 1010 EAVGNDPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1186
            EAVGNDPEERED LAPEIPAPPEIKQ                                  
Sbjct: 298  EAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDES 357

Query: 1187 XXXXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKR 1366
                              V             V+ +      +  P RGTP +K +K KR
Sbjct: 358  DEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPP-RGTPPAKPSKGKR 416

Query: 1367 KANGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS-----ALXXXXXXXXXXXXXX 1528
            K N  +SK  + +  KKVKTE D K   K+E  +T   S     A+              
Sbjct: 417  KLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSA 476

Query: 1529 XXXXVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSS 1708
                VTEDEIRAVL+++K VTTQDLVS+FK+RLK KEDK AFA +LRKISKIQK A   +
Sbjct: 477  ATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQN 536

Query: 1709 YVVLRER 1729
            +VVLRE+
Sbjct: 537  FVVLREK 543



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 30/60 (50%), Positives = 44/60 (73%)
 Frame = +2

Query: 1541 VTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVL 1720
            VTEDEIR VL+++K +TT +LV +FK RL   EDK +F+ +L+KI+K+QK      +VV+
Sbjct: 572  VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKITKLQKNPGSEKFVVV 631


>sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation factor IIF subunit alpha;
            Short=TFIIF-alpha; AltName: Full=General transcription
            factor IIF subunit 1; AltName: Full=Transcription
            initiation factor RAP74 homolog; Short=AtRAP74
            gi|5823572|emb|CAB53754.1| putative protein [Arabidopsis
            thaliana] gi|7267963|emb|CAB78304.1| putative protein
            [Arabidopsis thaliana]
          Length = 649

 Score =  506 bits (1303), Expect = e-140
 Identities = 290/547 (53%), Positives = 336/547 (61%), Gaps = 12/547 (2%)
 Frame = +2

Query: 125  MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYN 304
            MS  L L  SC  CGS SDLYGSSC+H+TLCL CG+ MA+ + KC+ECGT +TRLIREYN
Sbjct: 1    MSNCLQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYN 60

Query: 305  VRACSSNDKNYFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            VRA +  DKNYFI RF +GLP F KK +++KW+L+K+  QGRQ TD  REK KNKPW+LE
Sbjct: 61   VRAAAPTDKNYFIGRFVTGLPNF-KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE 119

Query: 485  DETGQFQFHGQLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 664
            DETGQFQ+ G LEG+QSA YYLL+MQ +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMK
Sbjct: 120  DETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 179

Query: 665  NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESG---SGGTRGRKKTS-GDEDEGNAS 832
            NRRKTADGYQRWMMKAANNGPA FGEV+  ++KESG    GG RGRKK+S GDE+EGN S
Sbjct: 180  NRRKTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGGRGRKKSSGGDEEEGNVS 237

Query: 833  DHGXXXXXXXXXRKNRLGLN-KRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDD 1009
            D G         RK+RLGLN K                             HEEIFTDDD
Sbjct: 238  DRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 297

Query: 1010 EAVGNDPEERED-LAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1186
            EAVGNDPEERED LAPEIPAPPEIKQ                                  
Sbjct: 298  EAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDES 357

Query: 1187 XXXXXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKR 1366
                              V             V+ +      +  P RGTP +K +K KR
Sbjct: 358  DEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPP-RGTPPAKPSKGKR 416

Query: 1367 KANGDESKPTNGAPLKKVKTETDVKPG-KDETPSTAKNS-----ALXXXXXXXXXXXXXX 1528
            K N  +SK  + +  KKVKTE D K   K+E  +T   S     A+              
Sbjct: 417  KLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSA 476

Query: 1529 XXXXVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSS 1708
                VTEDEIRAVL+++K VTTQDLVS+FK+RLK KEDK AFA +LRKISKIQK A   +
Sbjct: 477  ATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQN 536

Query: 1709 YVVLRER 1729
            +VVLRE+
Sbjct: 537  FVVLREK 543



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 30/60 (50%), Positives = 44/60 (73%)
 Frame = +2

Query: 1541 VTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVL 1720
            VTEDEIR VL+++K +TT +LV +FK RL   EDK +F+ +L+KI+K+QK      +VV+
Sbjct: 572  VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKIAKLQKNPGSEKFVVV 631


>ref|XP_003573836.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Brachypodium distachyon]
          Length = 530

 Score =  474 bits (1219), Expect = e-131
 Identities = 273/540 (50%), Positives = 329/540 (60%), Gaps = 7/540 (1%)
 Frame = +2

Query: 128  SIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNV 307
            S+DL+LKP+C  CGS SDLYG+ CKH TLC SCGK+MA +R +C  C  PIT LIREYNV
Sbjct: 3    SVDLVLKPACEGCGSPSDLYGTGCKHTTLCSSCGKSMALSRARCLVCSAPITNLIREYNV 62

Query: 308  RACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            RA +S DK + I RF +GLP FSKKKN ++KW+L KEGLQGRQ+TD ++EKY  KPW+LE
Sbjct: 63   RANASTDKAFSIGRFVTGLPPFSKKKNAENKWSLHKEGLQGRQLTDKMQEKYNRKPWILE 122

Query: 485  DETGQFQFHGQLEGAQS--AQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEK 658
            DETGQ+QF G +EG+QS  A YYLLMMQG+E  A PAGSWYNF+KVAQYKQLTLEEAEEK
Sbjct: 123  DETGQYQFQGHMEGSQSATATYYLLMMQGKEFHAFPAGSWYNFSKVAQYKQLTLEEAEEK 182

Query: 659  MKNRRKTADGYQRWMMKAANNGPAAFG-EVERFDDKESGSGGTRGRKKTSGDEDEGNASD 835
            M  R+ +A GY+RWMMKAA NGPAAFG ++++ +    G   +  R K   D +EGN SD
Sbjct: 183  MNKRKTSATGYERWMMKAATNGPAAFGSDIKKLEPTNDGEKES-ARPKKGKDNEEGNNSD 241

Query: 836  HGXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEA 1015
             G         RK+RLGL+KRG+                          HEE FTDDDEA
Sbjct: 242  KGEENEEDEAARKDRLGLSKRGM-DDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1016 VGNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1195
            V  DPEER DLAPEIPAPPEIKQ                                     
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRASGQNESDADEDD 360

Query: 1196 XXXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPA-ASGPNRGTPTSKSAKTKRKA 1372
                         SPVL            V+ +SP+KP  +SG  R TP +  +K KRK+
Sbjct: 361  EDDDDDES-----SPVLAPKQNDQPKDEPVD-NSPAKPTPSSGHARSTPPASKSKQKRKS 414

Query: 1373 NGDESKPTNGAPLKKVKTETDVKPG--KDETPSTAKNSALXXXXXXXXXXXXXXXXXXVT 1546
             GD++K +  A  KK K E D K    K+E PS+ K+++                   VT
Sbjct: 415  GGDDAKTSGSAASKKAKVEPDTKTSSIKEEAPSSLKHTS------KASASSRNANVSPVT 468

Query: 1547 EDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726
            EDEIR VLL   PVTTQDLVS+FKSRL+  EDK AFAE+L+KISKIQKT +G +YVVLRE
Sbjct: 469  EDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKT-NGHNYVVLRE 527


>gb|AAX95773.1| putative transcription initiation factor [Oryza sativa Japonica
            Group] gi|78708004|gb|ABB46979.1| mutant TFIIF-alpha,
            putative, expressed [Oryza sativa Japonica Group]
          Length = 531

 Score =  472 bits (1215), Expect = e-130
 Identities = 270/539 (50%), Positives = 327/539 (60%), Gaps = 6/539 (1%)
 Frame = +2

Query: 128  SIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPITRLIREYNV 307
            S DL+LK +C  CGS SDLYG+SCKH TLC SCGK+MA +  +C  C  PIT LIREYNV
Sbjct: 3    SADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREYNV 62

Query: 308  RACSSNDKNYFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE 484
            RA ++ DK++ I RF +GLP FSKKK+ ++KW+L KEGLQGRQ+ + +REKY  KPW+LE
Sbjct: 63   RANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILE 122

Query: 485  DETGQFQFHGQLEGAQS--AQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEK 658
            DETGQ+Q+ GQ+EG+QS  A YYLLMM G+E  A PAGSWYNF+K+AQYKQLTLEEAEEK
Sbjct: 123  DETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAEEK 182

Query: 659  MKNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDH 838
            M  R+ +A GY+RWMMKAA NGPAAFG   +  +  +G+     R K   + +EGN SD 
Sbjct: 183  MNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNSDK 242

Query: 839  GXXXXXXXXXRKNRLGLNKRGVXXXXXXXXXXXXXXXXXXXXXXXXXXHEEIFTDDDEAV 1018
            G         RKNRL LNK+ +                          HEE FTDDDEAV
Sbjct: 243  GEEDEEEEAARKNRLALNKKSM-DDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAV 301

Query: 1019 GNDPEEREDLAPEIPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198
              DPEER DLAPEIPAPPEIKQ                                      
Sbjct: 302  DIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNESDADEDDE 361

Query: 1199 XXXXXXXXXXXISPVLXXXXXXXXXXXXVETSSPSKPAASGPNRGTPTSKSAKTKRKA-N 1375
                        SPVL            V+ +SP+KP  SG  RGTP +  +K KRK+  
Sbjct: 362  DDDEDES-----SPVLAPKQKDQPKDEPVD-NSPAKPTPSGHARGTPPASKSKQKRKSGG 415

Query: 1376 GDESKPTNGAPLKKVKTETDVKP--GKDETPSTAKNSALXXXXXXXXXXXXXXXXXXVTE 1549
            GD+SK + GA  KK K E+D KP   KDETPS++K ++                   VTE
Sbjct: 416  GDDSKASGGAASKKAKVESDTKPSVAKDETPSSSKPAS-----KATAASKTSANVSPVTE 470

Query: 1550 DEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFAEVLRKISKIQKTASGSSYVVLRE 1726
            DEIR VLL   PVTTQDLVS+FKSRL+  EDK AFAE+L+KISKIQKT +G +YVVLR+
Sbjct: 471  DEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKT-NGHNYVVLRD 528