BLASTX nr result
ID: Atropa21_contig00007432
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00007432 (1341 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,... 612 e-172 ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,... 604 e-170 gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe... 327 7e-87 ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,... 325 2e-86 ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,... 325 3e-86 ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,... 324 6e-86 emb|CBI32760.3| unnamed protein product [Vitis vinifera] 320 9e-85 ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 314 5e-83 gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob... 314 6e-83 ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr... 309 2e-81 ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr... 308 4e-81 ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr... 300 7e-79 ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 300 9e-79 ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,... 299 2e-78 gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis] 295 3e-77 ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei... 294 7e-77 ref|XP_002326192.1| predicted protein [Populus trichocarpa] 293 9e-77 ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,... 289 2e-75 ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,... 281 3e-73 ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,... 260 8e-67 >ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Solanum tuberosum] Length = 562 Score = 612 bits (1578), Expect = e-172 Identities = 319/380 (83%), Positives = 334/380 (87%) Frame = +2 Query: 200 MEVAGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPD 379 ME AGRNLLSSPPTFSQKTQLRNC SSSVLMLHEHAAP L+SVPHAYL RHVPAS I P+ Sbjct: 1 MEAAGRNLLSSPPTFSQKTQLRNC-SSSVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPE 59 Query: 380 QQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPS 559 QQFENRLQLH VKEEKTSLATIDRRLV+ ASS+LEEN+AVDSE+NINALQVQLLR PGPS Sbjct: 60 QQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPS 119 Query: 560 YSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLL 739 YSFP Y+LK KGPLS + E L SKGDKL NFEPH+VVALARK DSKLL Sbjct: 120 YSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSKLL 179 Query: 740 ETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPD 919 DDSNFPNFL TNL DDKLK QRTVRSTR ERQSRKRGAPKPT +VQETNRSGRPD Sbjct: 180 ----DDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPD 235 Query: 920 VRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFARE 1099 VRR+VNESIDLNDPLRMFLWGPETKQLLT KEESEL+VKIQ SMKLQEVKHQLQIQFA E Sbjct: 236 VRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHE 295 Query: 1100 PTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG 1279 PT +EWAEAAG+TS EL+SQL GKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG Sbjct: 296 PTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG 355 Query: 1280 SMGLMKSVEKFKPQAGCRFP 1339 SMGLMKSVEKFKPQAGCRFP Sbjct: 356 SMGLMKSVEKFKPQAGCRFP 375 >ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Solanum lycopersicum] Length = 563 Score = 604 bits (1558), Expect = e-170 Identities = 317/381 (83%), Positives = 333/381 (87%), Gaps = 1/381 (0%) Frame = +2 Query: 200 MEVAGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPD 379 ME AGRNLLSSPPTFSQKTQLRNC SSSVLMLHEHAAP L+SVPH YL R+VPAS I P+ Sbjct: 1 MEAAGRNLLSSPPTFSQKTQLRNC-SSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPE 59 Query: 380 QQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPS 559 Q FENRLQLH VKEEKTSLATIDRRLVE ASS+LEEN+AVDSE+NINALQVQLL WPGPS Sbjct: 60 QHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPS 119 Query: 560 YSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLL 739 YSFP Y+LK KGPLS + E L SKGDKL NFEPH+VVALARK DSKLL Sbjct: 120 YSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLL 179 Query: 740 ETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETN-RSGRP 916 DDS+FPNFL T+L DDKLK QRTVRSTR IERQSRKRGAPKP EVQETN RSGRP Sbjct: 180 ----DDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRP 235 Query: 917 DVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAR 1096 DVRR+VNESIDLNDPLRMFLWGPETKQLLT KEESEL+VKIQ SMKLQEVKHQLQIQFAR Sbjct: 236 DVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAR 295 Query: 1097 EPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE 1276 EPT +EWAEAAG+TS EL+SQL GKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE Sbjct: 296 EPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE 355 Query: 1277 GSMGLMKSVEKFKPQAGCRFP 1339 GSMGLMKSVEKFKPQAGCRFP Sbjct: 356 GSMGLMKSVEKFKPQAGCRFP 376 >gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica] Length = 568 Score = 327 bits (838), Expect = 7e-87 Identities = 193/384 (50%), Positives = 249/384 (64%), Gaps = 8/384 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCL-----SSSVLMLHEHAAPTLTSVPHAYLARHVPASVIN 373 AGR+ LSS F T LR+ L S+SVLMLHE A P +TSVP +ARH P SV+ Sbjct: 3 AGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLL 62 Query: 374 PDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPG 553 +Q+ E + LH +KE+KTS A +DR +E +S E+ + D +N+ + QLL Sbjct: 63 QEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDI 122 Query: 554 PSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSK 733 F S K L ESL + +K + EP NVVALA+K DS+ Sbjct: 123 LDV-FSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQ 181 Query: 734 LLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRK---RGAPKPTHEVQETNR 904 + +FDD + T+LA+ ++ ++TVRSTR++ER+ ++ R PK E+N Sbjct: 182 SMGADFDDLGY-----TSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNS 236 Query: 905 SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084 DVR++++E + NDPLR+FLWGPET+QLLT KEE+EL+ ++Q KL+EVK +LQ Sbjct: 237 FTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQT 296 Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264 QF REPTLIEWAEA G++ L+SQLR G SSREKLI ANLRMVVHIAKQYQGRGL LQD Sbjct: 297 QFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQD 356 Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336 L+QEGSMGLMKSVEKFKPQAGCRF Sbjct: 357 LMQEGSMGLMKSVEKFKPQAGCRF 380 >ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X2 [Citrus sinensis] Length = 569 Score = 325 bits (834), Expect = 2e-86 Identities = 185/384 (48%), Positives = 248/384 (64%), Gaps = 8/384 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSS--------VLMLHEHAAPTLTSVPHAYLARHVPAS 364 AGRNLLSSPP+F +T++++ LSSS VLM +E +AP + SVP + +ARH P S Sbjct: 3 AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTS 62 Query: 365 VINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLR 544 V+ +Q+ E R LH KE+KTS AT D R +E + +EE + D ++ + L+ Q L Sbjct: 63 VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122 Query: 545 WPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXX 724 WP P E +SL +SL + ++ + EP + VALARK Sbjct: 123 WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182 Query: 725 DSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNR 904 + KL F D + LT+ L+ +TVRST+ +ER+S+KR KP ET Sbjct: 183 NPKLNGAEFTDIS-----LTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYN 237 Query: 905 SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084 S + V+++++E D NDPLR+FLWGPET++LLT EE EL+ +IQ ++L++ K +LQ Sbjct: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297 Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264 QF REPTLIEWA+A GL+ +L+S+L G SSREKLINANLR+VVH+AKQYQGRG+ L D Sbjct: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357 Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336 LLQEGSMGLMKSVEKFKPQAGCRF Sbjct: 358 LLQEGSMGLMKSVEKFKPQAGCRF 381 >ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X1 [Citrus sinensis] Length = 570 Score = 325 bits (833), Expect = 3e-86 Identities = 185/385 (48%), Positives = 248/385 (64%), Gaps = 9/385 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSS---------VLMLHEHAAPTLTSVPHAYLARHVPA 361 AGRNLLSSPP+F +T++++ LSSS VLM +E +AP + SVP + +ARH P Sbjct: 3 AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHFPT 62 Query: 362 SVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLL 541 SV+ +Q+ E R LH KE+KTS AT D R +E + +EE + D ++ + L+ Q L Sbjct: 63 SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 122 Query: 542 RWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXX 721 WP P E +SL +SL + ++ + EP + VALARK Sbjct: 123 HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 182 Query: 722 XDSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETN 901 + KL F D + LT+ L+ +TVRST+ +ER+S+KR KP ET Sbjct: 183 ENPKLNGAEFTDIS-----LTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETY 237 Query: 902 RSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQ 1081 S + V+++++E D NDPLR+FLWGPET++LLT EE EL+ +IQ ++L++ K +LQ Sbjct: 238 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 297 Query: 1082 IQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQ 1261 QF REPTLIEWA+A GL+ +L+S+L G SSREKLINANLR+VVH+AKQYQGRG+ L Sbjct: 298 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 357 Query: 1262 DLLQEGSMGLMKSVEKFKPQAGCRF 1336 DLLQEGSMGLMKSVEKFKPQAGCRF Sbjct: 358 DLLQEGSMGLMKSVEKFKPQAGCRF 382 >ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X3 [Citrus sinensis] Length = 561 Score = 324 bits (830), Expect = 6e-86 Identities = 181/376 (48%), Positives = 243/376 (64%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388 AGRNLLSSPP+F +T++++ LSSS +AP + SVP + +ARH P SV+ +Q+ Sbjct: 3 AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRD 62 Query: 389 ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568 E R LH KE+KTS AT D R +E + +EE + D ++ + L+ Q L WP Sbjct: 63 EYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLS 122 Query: 569 PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748 P E +SL +SL + ++ + EP + VALARK + KL Sbjct: 123 PPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAE 182 Query: 749 FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928 F D + LT+ L+ +TVRST+ +ER+S+KR KP ET S + V++ Sbjct: 183 FTDIS-----LTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKK 237 Query: 929 RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108 +++E D NDPLR+FLWGPET++LLT EE EL+ +IQ ++L++ K +LQ QF REPTL Sbjct: 238 KLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 297 Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288 IEWA+A GL+ +L+S+L G SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEGSMG Sbjct: 298 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMG 357 Query: 1289 LMKSVEKFKPQAGCRF 1336 LMKSVEKFKPQAGCRF Sbjct: 358 LMKSVEKFKPQAGCRF 373 >emb|CBI32760.3| unnamed protein product [Vitis vinifera] Length = 561 Score = 320 bits (820), Expect = 9e-85 Identities = 189/377 (50%), Positives = 249/377 (66%), Gaps = 1/377 (0%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388 AG N+LSS P+F +T RN SSSVLMLH+ AP + S+P +AR P SV+ +Q+ Sbjct: 3 AGTNILSSTPSFPPRTHFRNS-SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRD 60 Query: 389 ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568 E R +K+E+T AT+++R +E S EEN ++ +N + QLL PG YS Sbjct: 61 EYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVN-FERQLLLQPGLWYSL 119 Query: 569 PSYHLKEKGPLSLDT-ESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLET 745 PS EK P S +S+ + + + +P +V+ALA+K ++KLL Sbjct: 120 PSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGA 179 Query: 746 NFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVR 925 + +DS P+ + + L+ ++TVRSTRL+ER+S+KR PK V E + S R +V+ Sbjct: 180 DLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPKVA--VHENHGSRRAEVQ 236 Query: 926 RRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPT 1105 R++NE D DPLR+FLWGPET++LLT KEESEL+V+IQ M+L+EVK +LQ REPT Sbjct: 237 RKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPT 296 Query: 1106 LIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSM 1285 ++EWAEA GL+ LQSQL G SR+KLI ANLRMVVHIAKQYQGRGLNLQDLLQEGSM Sbjct: 297 VVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSM 356 Query: 1286 GLMKSVEKFKPQAGCRF 1336 GLM SVEKFKP AGCRF Sbjct: 357 GLMNSVEKFKPNAGCRF 373 >ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] Length = 572 Score = 314 bits (805), Expect = 5e-83 Identities = 188/387 (48%), Positives = 248/387 (64%), Gaps = 11/387 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSS----------VLMLHEHAAPTLTSVPHAYLARHVP 358 AG N+LSS P+F +T RN SS VLMLH+ AP + S+P +AR P Sbjct: 3 AGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARKFP 61 Query: 359 ASVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQL 538 SV+ +Q+ E R +K+E+T AT+++R +E S EEN ++ +N + QL Sbjct: 62 TSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVN-FERQL 120 Query: 539 LRWPGPSYSFPSYHLKEKGPLSLDT-ESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXX 715 L PG YS PS EK P S +S+ + + + +P +V+ALA+K Sbjct: 121 LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 180 Query: 716 XXXDSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQE 895 ++KLL + +DS P+ + + L+ ++TVRSTRL+ER+S+KR PK V E Sbjct: 181 LYENAKLLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPKVA--VHE 237 Query: 896 TNRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQ 1075 + S R +V+R++NE D DPLR+FLWGPET++LLT KEESEL+V+IQ M+L+EVK + Sbjct: 238 NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 297 Query: 1076 LQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLN 1255 LQ REPT++EWAEA GL+ LQSQL G SR+KLI ANLRMVVHIAKQYQGRGLN Sbjct: 298 LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 357 Query: 1256 LQDLLQEGSMGLMKSVEKFKPQAGCRF 1336 LQDLLQEGSMGLM SVEKFKP AGCRF Sbjct: 358 LQDLLQEGSMGLMNSVEKFKPNAGCRF 384 >gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao] Length = 568 Score = 314 bits (804), Expect = 6e-83 Identities = 188/386 (48%), Positives = 247/386 (63%), Gaps = 10/386 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCL----SSSVLMLHEHAAPTLTSVPHAYLARHVPASVINP 376 A RNLLS PPTFS +TQL++ + SSSVLM HE AAP TS+P +ARH P SV+ Sbjct: 3 AARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQ 62 Query: 377 DQQFENRLQ--LHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINAL--QVQLLR 544 +Q+ + R LH KE+K D++ +E+ +S EEN + N L + +LL+ Sbjct: 63 EQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEEN----ASNNFGQLGFEKKLLQ 118 Query: 545 WPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXX 724 WP + +E + + +S+ + ++ + EP N+VALA+K Sbjct: 119 WPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSE 178 Query: 725 DSKLLETNFDDSNFPNFLLTNLADDKLKGQR--TVRSTRLIERQSRKRGAPKPTHEVQET 898 D KL + DDS + N ++ + TVRSTR +ERQS++R +P ++ET Sbjct: 179 DLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV-QPKVTIRET 234 Query: 899 NRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQL 1078 S R DVRR+++E D NDPLR+FLWGPETKQLLT KEESEL ++Q M+L++VK +L Sbjct: 235 YSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKL 294 Query: 1079 QIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNL 1258 Q QF REPTL+EWAEA GL LQ++L G SSR+KLI ANLRMVVHIAKQYQ RGL+L Sbjct: 295 QSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSL 354 Query: 1259 QDLLQEGSMGLMKSVEKFKPQAGCRF 1336 QDLLQEGSMGLMKSVE+FKPQ GCRF Sbjct: 355 QDLLQEGSMGLMKSVERFKPQVGCRF 380 >ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina] gi|557530788|gb|ESR41971.1| hypothetical protein CICLE_v10011376mg [Citrus clementina] Length = 569 Score = 309 bits (792), Expect = 2e-81 Identities = 181/384 (47%), Positives = 242/384 (63%), Gaps = 8/384 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSS--------VLMLHEHAAPTLTSVPHAYLARHVPAS 364 AGRNLLSSPP+F +T++++ LSSS VLM +E +AP + SVP + +ARH P S Sbjct: 3 AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTS 62 Query: 365 VINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLR 544 V+ +Q+ E R LH KE+KTS AT D R +E + +EE + D ++ + L+ Q L Sbjct: 63 VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122 Query: 545 WPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXX 724 WP P E +SL +SL + ++ + EP + VALARK Sbjct: 123 WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182 Query: 725 DSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNR 904 + KL F D + LT+ L+ +TVRSTR +ER+S+KR KP ET Sbjct: 183 NPKLNGAEFTDIS-----LTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYN 237 Query: 905 SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084 S + V+++++E D NDPLR+FLWGPET++LLT EE EL+ +IQ ++L++ K +LQ Sbjct: 238 SRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297 Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264 QF REPTLI L+ +L+S+L G SSREKLINANLR+VVH+AKQYQGRG+ L D Sbjct: 298 QFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357 Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336 LLQEGSMGLMKSVEKFKPQAGCRF Sbjct: 358 LLQEGSMGLMKSVEKFKPQAGCRF 381 >ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina] gi|557530789|gb|ESR41972.1| hypothetical protein CICLE_v10011376mg [Citrus clementina] Length = 561 Score = 308 bits (788), Expect = 4e-81 Identities = 177/376 (47%), Positives = 237/376 (63%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388 AGRNLLSSPP+F +T++++ LSSS +AP + SVP + +ARH P SV+ +Q+ Sbjct: 3 AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRD 62 Query: 389 ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568 E R LH KE+KTS AT D R +E + +EE + D ++ + L+ Q L WP Sbjct: 63 EYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLS 122 Query: 569 PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748 P E +SL +SL + ++ + EP + VALARK + KL Sbjct: 123 PPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAE 182 Query: 749 FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928 F D + LT+ L+ +TVRSTR +ER+S+KR KP ET S + V++ Sbjct: 183 FTDIS-----LTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKK 237 Query: 929 RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108 +++E D NDPLR+FLWGPET++LLT EE EL+ +IQ ++L++ K +LQ QF REPTL Sbjct: 238 KLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 297 Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288 I L+ +L+S+L G SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEGSMG Sbjct: 298 ILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMG 357 Query: 1289 LMKSVEKFKPQAGCRF 1336 LMKSVEKFKPQAGCRF Sbjct: 358 LMKSVEKFKPQAGCRF 373 >ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina] gi|557530787|gb|ESR41970.1| hypothetical protein CICLE_v10011376mg [Citrus clementina] Length = 558 Score = 300 bits (769), Expect = 7e-79 Identities = 175/376 (46%), Positives = 237/376 (63%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388 AGRNLLSSPP+F +T++++ LSSS ++ ++ SVP + +ARH P SV+ +Q+ Sbjct: 3 AGRNLLSSPPSFPSRTRVKHSLSSSA---SSSSSSSVASVPTSSVARHFPTSVLLQEQRD 59 Query: 389 ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568 E R LH KE+KTS AT D R +E + +EE + D ++ + L+ Q L WP Sbjct: 60 EYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLS 119 Query: 569 PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748 P E +SL +SL + ++ + EP + VALARK + KL Sbjct: 120 PPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAE 179 Query: 749 FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928 F D + LT+ L+ +TVRSTR +ER+S+KR KP ET S + V++ Sbjct: 180 FTDIS-----LTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKK 234 Query: 929 RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108 +++E D NDPLR+FLWGPET++LLT EE EL+ +IQ ++L++ K +LQ QF REPTL Sbjct: 235 KLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 294 Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288 I L+ +L+S+L G SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEGSMG Sbjct: 295 ILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMG 354 Query: 1289 LMKSVEKFKPQAGCRF 1336 LMKSVEKFKPQAGCRF Sbjct: 355 LMKSVEKFKPQAGCRF 370 >ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 548 Score = 300 bits (768), Expect = 9e-79 Identities = 181/389 (46%), Positives = 234/389 (60%), Gaps = 10/389 (2%) Frame = +2 Query: 200 MEVAGRNLLSSPPTFSQKTQLRNCLSSS-------VLMLHEHAAPTLTSVPHAYLARHVP 358 ME A R LSSPP F +T +N LSSS V MLHE A P +TS P +AR+ P Sbjct: 1 META-RTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFP 59 Query: 359 ASVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQL 538 SV+ +Q+ E R L+ KE+KT AT+D + ++ +S + E + S+ + Sbjct: 60 TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTS---DQEGICSDVLDQLILHSN 116 Query: 539 LRWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXX 718 L W SL +S+ + D+L EP NV+ LARK Sbjct: 117 LSW------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASK----- 153 Query: 719 XXDSKLLE---TNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEV 889 ++ LL N DD+ T+L++ L+ +TVRSTR +ERQS+ R K Sbjct: 154 --EAALLAQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIF 211 Query: 890 QETNRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVK 1069 E S R V++++NE D DPLR+FLWGPETKQLLT KEESEL+ ++Q M L+ VK Sbjct: 212 HEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVK 271 Query: 1070 HQLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRG 1249 + ++QF R+PTL+EWA+A GL+ +QSQL G SREKLINANLRMVVHIAKQYQGRG Sbjct: 272 EKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRG 331 Query: 1250 LNLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336 L+LQDLLQEGSMGLMKS+EKFKPQ GCRF Sbjct: 332 LSLQDLLQEGSMGLMKSIEKFKPQVGCRF 360 >ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Cucumis sativus] gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Cucumis sativus] Length = 562 Score = 299 bits (765), Expect = 2e-78 Identities = 182/391 (46%), Positives = 236/391 (60%), Gaps = 15/391 (3%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCL---------------SSSVLMLHEHAAPTLTSVPHAYL 343 AG NLLSS F + R+ L SSSV M E A+P Sbjct: 3 AGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASP---------- 52 Query: 344 ARHVPASVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINA 523 AR+ S ++ +Q E R Q +K++++S T++RRL+E S ++E D + I Sbjct: 53 ARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIE-RSVPIDEGSRDDHDHLIWE 111 Query: 524 LQVQLLRWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXX 703 L+ Q + WPG S+P ++E S++ ES + G+ L EP NV+ALA+K Sbjct: 112 LKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASK 171 Query: 704 XXXXXXXDSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTH 883 +++L+ T+ D S+ L D K RTVRSTRL +R+S+KR PK Sbjct: 172 QAALLVDETELVGTSLDYSS--------LDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVT 223 Query: 884 EVQETNRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQE 1063 + E + D RR+ +E D NDPLR+FLWGPETK+LLT +EESEL+V+IQ M L Sbjct: 224 TIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDN 283 Query: 1064 VKHQLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQG 1243 VK +LQ QF REPTL+EWAEA G+T LQSQL ++SREKLINANLRMVVHIAKQYQG Sbjct: 284 VKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQG 343 Query: 1244 RGLNLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336 RGL+L DLLQ GS+GLMKSVEKFKPQAGCRF Sbjct: 344 RGLSLHDLLQVGSLGLMKSVEKFKPQAGCRF 374 >gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis] Length = 543 Score = 295 bits (755), Expect = 3e-77 Identities = 175/380 (46%), Positives = 241/380 (63%), Gaps = 1/380 (0%) Frame = +2 Query: 200 MEVAGRNLLSSPPTFSQKTQLRNCL-SSSVLMLHEHAAPTLTSVPHAYLARHVPASVINP 376 MEV GRNLLS PP+F +T LRN L SSS + A +TS+P +A+ SV+ Sbjct: 1 MEV-GRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQ 59 Query: 377 DQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGP 556 +Q+ E + L KE+KTS ++RR D+ + + E+ D + + + + WPG Sbjct: 60 EQRDEFKPLLRVNKEDKTSQGVLNRRQ-NDSGALVHEDTLEDYNQFVWEFERPSVHWPGF 118 Query: 557 SYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKL 736 + PS K K SL E+ K + E + +ALA+K +SKL Sbjct: 119 WHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKL 178 Query: 737 LETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRP 916 + T+ DD +FL KG +TVRSTRL+ER+S++R P+ + E R+ Sbjct: 179 VGTDSDDMLSVSFLG--------KGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAA 230 Query: 917 DVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAR 1096 D+R+R++E ++ +DPLR+FL GPET+QLLT +EESEL+ ++Q +KL++VK +LQ +F R Sbjct: 231 DIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEFGR 290 Query: 1097 EPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE 1276 EPTL+EWAEA GL+ LQSQ++ G SSREKLI ANLR+VVHIAKQYQGRG+ +QDL+QE Sbjct: 291 EPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLMQE 350 Query: 1277 GSMGLMKSVEKFKPQAGCRF 1336 GSMGLMKSVEKFKPQ GCRF Sbjct: 351 GSMGLMKSVEKFKPQVGCRF 370 >ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa] gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa] Length = 535 Score = 294 bits (752), Expect = 7e-77 Identities = 172/376 (45%), Positives = 230/376 (61%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388 AGR LLSS P+F +T L+N L+SSVL+L E A P ++S+P A+H P SV+ +Q+ Sbjct: 3 AGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRD 62 Query: 389 ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568 E R + KE++ S AT+DRR E +S E ++ + ++ + + QL WP Sbjct: 63 EFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP------ 116 Query: 569 PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748 + + DKL + EP NV+ LA++ L + N Sbjct: 117 ----------------AYWNLTDKLIDVEPTNVINLAKRALSASKHAAF------LADNN 154 Query: 749 FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928 D N + T+ + L+ + VRS R + RQS R APK + ET S DV++ Sbjct: 155 TDLDNLAS---TSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQK 211 Query: 929 RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108 R+++ D NDPLR+FLWGPETKQLLT KEE EL+ +IQ M L+ VK++L+ QF REPTL Sbjct: 212 RLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTL 271 Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288 +EWA+A GL+ L+ QL G SREKLINANLRMVVHIAK+YQ RGL LQDLLQEG++G Sbjct: 272 VEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVG 331 Query: 1289 LMKSVEKFKPQAGCRF 1336 LMKS+EKFKPQAGCRF Sbjct: 332 LMKSIEKFKPQAGCRF 347 >ref|XP_002326192.1| predicted protein [Populus trichocarpa] Length = 535 Score = 293 bits (751), Expect = 9e-77 Identities = 171/376 (45%), Positives = 230/376 (61%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388 AGR LLSS P+F +T L+N L+SSVL+L E A P ++S+P A+H P SV+ +Q+ Sbjct: 3 AGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRD 62 Query: 389 ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568 E R + KE++ S AT+DRR E +S E ++ + ++ + + QL WP Sbjct: 63 EFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP------ 116 Query: 569 PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748 + + DKL + EP NV+ LA++ L + N Sbjct: 117 ----------------AYWNLTDKLIDVEPTNVINLAKRALSASKHAAF------LADNN 154 Query: 749 FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928 D N + T+ + L+ + VRS R + RQS R APK + ET S D+++ Sbjct: 155 TDLDNLAS---TSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQK 211 Query: 929 RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108 R+++ D NDPLR+FLWGPETKQLLT KEE EL+ +IQ M L+ VK++L+ QF REPTL Sbjct: 212 RLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTL 271 Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288 +EWA+A GL+ L+ QL G SREKLINANLRMVVHIAK+YQ RGL LQDLLQEG++G Sbjct: 272 VEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVG 331 Query: 1289 LMKSVEKFKPQAGCRF 1336 LMKS+EKFKPQAGCRF Sbjct: 332 LMKSIEKFKPQAGCRF 347 >ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Fragaria vesca subsp. vesca] Length = 554 Score = 289 bits (740), Expect = 2e-75 Identities = 182/384 (47%), Positives = 234/384 (60%), Gaps = 8/384 (2%) Frame = +2 Query: 209 AGRNLLSSPPTFSQKTQLRNCL-----SSSVLMLHEHAAPTLTSVPHAYLARHVPASVIN 373 AGR+ LSS F TQLR+ L S+SVLMLHE AAP +TSVP +++ RH P SV+ Sbjct: 3 AGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSVLL 62 Query: 374 PDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPG 553 +Q+ E + LH KEEK S AT+DR +E+ ++ EE+ +D + QL P Sbjct: 63 QEQRDEFKPLLHIFKEEKASQATLDRIQIENTTA--EEDFNIDDFYKLVKDFRQLHVTPS 120 Query: 554 PSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSK 733 + E P ES + + + EP +V+ LA+ SK Sbjct: 121 --------QIGENSPTGSALES-NTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSK 171 Query: 734 LLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSR---KRGAPKPTHEVQETNR 904 + ++S T+L + TVRST+L+ER+ + KR E + Sbjct: 172 SISAGLNES-------TSLGLGW--EEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSS 222 Query: 905 SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084 S D+RR+ E ++ NDPLR+FLWGPET+QLLT+KEE+EL+ ++Q KL+ VK +LQ Sbjct: 223 SNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQS 282 Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264 QF REPTLIEWAEA G++ LQSQLR G SSREKLI +NLRMVVHIAKQYQGRGL LQD Sbjct: 283 QFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQD 342 Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336 LLQEGSMGLMKSVEKFKPQAGCRF Sbjct: 343 LLQEGSMGLMKSVEKFKPQAGCRF 366 >ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Glycine max] Length = 575 Score = 281 bits (720), Expect = 3e-73 Identities = 178/392 (45%), Positives = 235/392 (59%), Gaps = 13/392 (3%) Frame = +2 Query: 200 MEVAGRNLLSSPPTFSQKTQL------RNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPA 361 ME A SSPP F +T + +SSVLMLHE A+PT+ S + A++ PA Sbjct: 1 MEFARTMFCSSPP-FPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPA 59 Query: 362 SVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLL 541 SV+ P+Q+ E R LH KE+KTS A + R + D + EEN ++++ + + L Sbjct: 60 SVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM-DTVTVHEENNTENADQVVLDFRKHLH 118 Query: 542 RWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXX 721 WP Y S + E S E + ++ N N V+LA+K Sbjct: 119 HWPNLQYLLTSSQIGEVAASST-LEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVV 177 Query: 722 XDSKLLETNFDDSNFPNFLL-TNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQET 898 D K ++ DD + P L T+LAD + +TVRSTRL+ER+S++R PK ET Sbjct: 178 EDLKSIKA--DDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDET 235 Query: 899 NRSGRPDVRRRV------NESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQ 1060 + + D + ++ NE +D +DPLR+FLWGPETKQLLT+++ES+L+ +IQ ++L+ Sbjct: 236 YLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLE 295 Query: 1061 EVKHQLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQ 1240 EVK LQ QF REPT+ EWAE AGL LQSQL G SREKLI ANLRMVVH+AK YQ Sbjct: 296 EVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQ 355 Query: 1241 GRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336 GRGL+LQDLLQEGSMGLMKSVEKF P AG RF Sbjct: 356 GRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRF 387 >ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine max] Length = 574 Score = 260 bits (665), Expect = 8e-67 Identities = 170/388 (43%), Positives = 226/388 (58%), Gaps = 14/388 (3%) Frame = +2 Query: 215 RNLLSSPPTFSQKTQ-----LRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPD 379 R + S P F +T L S+SVLML E A+PT+ S + A++ PASV+ + Sbjct: 5 RTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQE 64 Query: 380 QQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPS 559 Q+ E R LH KE+KTS A + R + D EEN ++++ + + L WP Sbjct: 65 QRDEYRPLLHMSKEDKTSQAMLSTRQM-DTVMVHEENNTENADQVVLDFRKHLHYWPHLQ 123 Query: 560 YSFPSYHLKEKGPLSLDT--ESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSK 733 S + G +S + + + S D+ N N V+LA+K D K Sbjct: 124 NLLAS---SQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLK 180 Query: 734 LLETNFDDSNFPNFLL-TNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSG 910 ++ DD + P L T LAD + +TVRSTRL+ER+S++R PK ET + Sbjct: 181 SIKA--DDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLAR 238 Query: 911 RPD------VRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKH 1072 + D V ++ NE +D NDPL FL GPETKQLLT+++ES+L+ +IQ ++L+EVK Sbjct: 239 KDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKT 298 Query: 1073 QLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGL 1252 +LQ QF REPT+ EWAE GL L +QLR G SREKLI ANLRMVVH+AK YQGRGL Sbjct: 299 KLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGL 358 Query: 1253 NLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336 +LQDLLQEGSMGLMKSVEKF P G RF Sbjct: 359 SLQDLLQEGSMGLMKSVEKFNPLVGSRF 386