BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00007432
         (1341 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   612   e-172
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   604   e-170
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   327   7e-87
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   325   2e-86
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   325   3e-86
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   324   6e-86
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              320   9e-85
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   314   5e-83
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   314   6e-83
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   309   2e-81
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   308   4e-81
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   300   7e-79
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   300   9e-79
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   299   2e-78
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     295   3e-77
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   294   7e-77
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           293   9e-77
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   289   2e-75
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   281   3e-73
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   260   8e-67

>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  612 bits (1578), Expect = e-172
 Identities = 319/380 (83%), Positives = 334/380 (87%)
 Frame = +2

Query: 200  MEVAGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPD 379
            ME AGRNLLSSPPTFSQKTQLRNC SSSVLMLHEHAAP L+SVPHAYL RHVPAS I P+
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLRNC-SSSVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPE 59

Query: 380  QQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPS 559
            QQFENRLQLH VKEEKTSLATIDRRLV+ ASS+LEEN+AVDSE+NINALQVQLLR PGPS
Sbjct: 60   QQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPS 119

Query: 560  YSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLL 739
            YSFP Y+LK KGPLS + E L SKGDKL NFEPH+VVALARK             DSKLL
Sbjct: 120  YSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSKLL 179

Query: 740  ETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPD 919
                DDSNFPNFL TNL DDKLK QRTVRSTR  ERQSRKRGAPKPT +VQETNRSGRPD
Sbjct: 180  ----DDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPD 235

Query: 920  VRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFARE 1099
            VRR+VNESIDLNDPLRMFLWGPETKQLLT KEESEL+VKIQ SMKLQEVKHQLQIQFA E
Sbjct: 236  VRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHE 295

Query: 1100 PTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG 1279
            PT +EWAEAAG+TS EL+SQL  GKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG
Sbjct: 296  PTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG 355

Query: 1280 SMGLMKSVEKFKPQAGCRFP 1339
            SMGLMKSVEKFKPQAGCRFP
Sbjct: 356  SMGLMKSVEKFKPQAGCRFP 375


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  604 bits (1558), Expect = e-170
 Identities = 317/381 (83%), Positives = 333/381 (87%), Gaps = 1/381 (0%)
 Frame = +2

Query: 200  MEVAGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPD 379
            ME AGRNLLSSPPTFSQKTQLRNC SSSVLMLHEHAAP L+SVPH YL R+VPAS I P+
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLRNC-SSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPE 59

Query: 380  QQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPS 559
            Q FENRLQLH VKEEKTSLATIDRRLVE ASS+LEEN+AVDSE+NINALQVQLL WPGPS
Sbjct: 60   QHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPS 119

Query: 560  YSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLL 739
            YSFP Y+LK KGPLS + E L SKGDKL NFEPH+VVALARK             DSKLL
Sbjct: 120  YSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLL 179

Query: 740  ETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETN-RSGRP 916
                DDS+FPNFL T+L DDKLK QRTVRSTR IERQSRKRGAPKP  EVQETN RSGRP
Sbjct: 180  ----DDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRP 235

Query: 917  DVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAR 1096
            DVRR+VNESIDLNDPLRMFLWGPETKQLLT KEESEL+VKIQ SMKLQEVKHQLQIQFAR
Sbjct: 236  DVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAR 295

Query: 1097 EPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE 1276
            EPT +EWAEAAG+TS EL+SQL  GKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE
Sbjct: 296  EPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE 355

Query: 1277 GSMGLMKSVEKFKPQAGCRFP 1339
            GSMGLMKSVEKFKPQAGCRFP
Sbjct: 356  GSMGLMKSVEKFKPQAGCRFP 376


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  327 bits (838), Expect = 7e-87
 Identities = 193/384 (50%), Positives = 249/384 (64%), Gaps = 8/384 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCL-----SSSVLMLHEHAAPTLTSVPHAYLARHVPASVIN 373
            AGR+ LSS   F   T LR+ L     S+SVLMLHE A P +TSVP   +ARH P SV+ 
Sbjct: 3    AGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLL 62

Query: 374  PDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPG 553
             +Q+ E +  LH +KE+KTS A +DR  +E  +S  E+ +  D    +N+ + QLL    
Sbjct: 63   QEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDI 122

Query: 554  PSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSK 733
                F S     K    L  ESL +  +K  + EP NVVALA+K             DS+
Sbjct: 123  LDV-FSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQ 181

Query: 734  LLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRK---RGAPKPTHEVQETNR 904
             +  +FDD  +     T+LA+  ++ ++TVRSTR++ER+ ++   R  PK      E+N 
Sbjct: 182  SMGADFDDLGY-----TSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNS 236

Query: 905  SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084
                DVR++++E  + NDPLR+FLWGPET+QLLT KEE+EL+ ++Q   KL+EVK +LQ 
Sbjct: 237  FTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQT 296

Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264
            QF REPTLIEWAEA G++   L+SQLR G SSREKLI ANLRMVVHIAKQYQGRGL LQD
Sbjct: 297  QFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQD 356

Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336
            L+QEGSMGLMKSVEKFKPQAGCRF
Sbjct: 357  LMQEGSMGLMKSVEKFKPQAGCRF 380


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  325 bits (834), Expect = 2e-86
 Identities = 185/384 (48%), Positives = 248/384 (64%), Gaps = 8/384 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSS--------VLMLHEHAAPTLTSVPHAYLARHVPAS 364
            AGRNLLSSPP+F  +T++++ LSSS        VLM +E +AP + SVP + +ARH P S
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTS 62

Query: 365  VINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLR 544
            V+  +Q+ E R  LH  KE+KTS AT D R +E  +  +EE  + D ++ +  L+ Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 545  WPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXX 724
            WP      P     E   +SL  +SL +  ++  + EP + VALARK             
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 725  DSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNR 904
            + KL    F D +     LT+     L+  +TVRST+ +ER+S+KR   KP     ET  
Sbjct: 183  NPKLNGAEFTDIS-----LTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYN 237

Query: 905  SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084
            S +  V+++++E  D NDPLR+FLWGPET++LLT  EE EL+ +IQ  ++L++ K +LQ 
Sbjct: 238  SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297

Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264
            QF REPTLIEWA+A GL+  +L+S+L  G SSREKLINANLR+VVH+AKQYQGRG+ L D
Sbjct: 298  QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357

Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336
            LLQEGSMGLMKSVEKFKPQAGCRF
Sbjct: 358  LLQEGSMGLMKSVEKFKPQAGCRF 381


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  325 bits (833), Expect = 3e-86
 Identities = 185/385 (48%), Positives = 248/385 (64%), Gaps = 9/385 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSS---------VLMLHEHAAPTLTSVPHAYLARHVPA 361
            AGRNLLSSPP+F  +T++++ LSSS         VLM +E +AP + SVP + +ARH P 
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHFPT 62

Query: 362  SVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLL 541
            SV+  +Q+ E R  LH  KE+KTS AT D R +E  +  +EE  + D ++ +  L+ Q L
Sbjct: 63   SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 122

Query: 542  RWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXX 721
             WP      P     E   +SL  +SL +  ++  + EP + VALARK            
Sbjct: 123  HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 182

Query: 722  XDSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETN 901
             + KL    F D +     LT+     L+  +TVRST+ +ER+S+KR   KP     ET 
Sbjct: 183  ENPKLNGAEFTDIS-----LTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETY 237

Query: 902  RSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQ 1081
             S +  V+++++E  D NDPLR+FLWGPET++LLT  EE EL+ +IQ  ++L++ K +LQ
Sbjct: 238  NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 297

Query: 1082 IQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQ 1261
             QF REPTLIEWA+A GL+  +L+S+L  G SSREKLINANLR+VVH+AKQYQGRG+ L 
Sbjct: 298  SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 357

Query: 1262 DLLQEGSMGLMKSVEKFKPQAGCRF 1336
            DLLQEGSMGLMKSVEKFKPQAGCRF
Sbjct: 358  DLLQEGSMGLMKSVEKFKPQAGCRF 382


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  324 bits (830), Expect = 6e-86
 Identities = 181/376 (48%), Positives = 243/376 (64%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388
            AGRNLLSSPP+F  +T++++ LSSS       +AP + SVP + +ARH P SV+  +Q+ 
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRD 62

Query: 389  ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568
            E R  LH  KE+KTS AT D R +E  +  +EE  + D ++ +  L+ Q L WP      
Sbjct: 63   EYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLS 122

Query: 569  PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748
            P     E   +SL  +SL +  ++  + EP + VALARK             + KL    
Sbjct: 123  PPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAE 182

Query: 749  FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928
            F D +     LT+     L+  +TVRST+ +ER+S+KR   KP     ET  S +  V++
Sbjct: 183  FTDIS-----LTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKK 237

Query: 929  RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108
            +++E  D NDPLR+FLWGPET++LLT  EE EL+ +IQ  ++L++ K +LQ QF REPTL
Sbjct: 238  KLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 297

Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288
            IEWA+A GL+  +L+S+L  G SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEGSMG
Sbjct: 298  IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMG 357

Query: 1289 LMKSVEKFKPQAGCRF 1336
            LMKSVEKFKPQAGCRF
Sbjct: 358  LMKSVEKFKPQAGCRF 373


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  320 bits (820), Expect = 9e-85
 Identities = 189/377 (50%), Positives = 249/377 (66%), Gaps = 1/377 (0%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388
            AG N+LSS P+F  +T  RN  SSSVLMLH+  AP + S+P   +AR  P SV+  +Q+ 
Sbjct: 3    AGTNILSSTPSFPPRTHFRNS-SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRD 60

Query: 389  ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568
            E R     +K+E+T  AT+++R +E   S  EEN    ++  +N  + QLL  PG  YS 
Sbjct: 61   EYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVN-FERQLLLQPGLWYSL 119

Query: 569  PSYHLKEKGPLSLDT-ESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLET 745
            PS    EK P S    +S+ +  +   + +P +V+ALA+K             ++KLL  
Sbjct: 120  PSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGA 179

Query: 746  NFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVR 925
            + +DS  P+    +  +  L+ ++TVRSTRL+ER+S+KR  PK    V E + S R +V+
Sbjct: 180  DLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPKVA--VHENHGSRRAEVQ 236

Query: 926  RRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPT 1105
            R++NE  D  DPLR+FLWGPET++LLT KEESEL+V+IQ  M+L+EVK +LQ    REPT
Sbjct: 237  RKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPT 296

Query: 1106 LIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSM 1285
            ++EWAEA GL+   LQSQL  G  SR+KLI ANLRMVVHIAKQYQGRGLNLQDLLQEGSM
Sbjct: 297  VVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSM 356

Query: 1286 GLMKSVEKFKPQAGCRF 1336
            GLM SVEKFKP AGCRF
Sbjct: 357  GLMNSVEKFKPNAGCRF 373


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  314 bits (805), Expect = 5e-83
 Identities = 188/387 (48%), Positives = 248/387 (64%), Gaps = 11/387 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSS----------VLMLHEHAAPTLTSVPHAYLARHVP 358
            AG N+LSS P+F  +T  RN  SS           VLMLH+  AP + S+P   +AR  P
Sbjct: 3    AGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARKFP 61

Query: 359  ASVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQL 538
             SV+  +Q+ E R     +K+E+T  AT+++R +E   S  EEN    ++  +N  + QL
Sbjct: 62   TSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVN-FERQL 120

Query: 539  LRWPGPSYSFPSYHLKEKGPLSLDT-ESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXX 715
            L  PG  YS PS    EK P S    +S+ +  +   + +P +V+ALA+K          
Sbjct: 121  LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 180

Query: 716  XXXDSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQE 895
               ++KLL  + +DS  P+    +  +  L+ ++TVRSTRL+ER+S+KR  PK    V E
Sbjct: 181  LYENAKLLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPKVA--VHE 237

Query: 896  TNRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQ 1075
             + S R +V+R++NE  D  DPLR+FLWGPET++LLT KEESEL+V+IQ  M+L+EVK +
Sbjct: 238  NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 297

Query: 1076 LQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLN 1255
            LQ    REPT++EWAEA GL+   LQSQL  G  SR+KLI ANLRMVVHIAKQYQGRGLN
Sbjct: 298  LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 357

Query: 1256 LQDLLQEGSMGLMKSVEKFKPQAGCRF 1336
            LQDLLQEGSMGLM SVEKFKP AGCRF
Sbjct: 358  LQDLLQEGSMGLMNSVEKFKPNAGCRF 384


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  314 bits (804), Expect = 6e-83
 Identities = 188/386 (48%), Positives = 247/386 (63%), Gaps = 10/386 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCL----SSSVLMLHEHAAPTLTSVPHAYLARHVPASVINP 376
            A RNLLS PPTFS +TQL++ +    SSSVLM HE AAP  TS+P   +ARH P SV+  
Sbjct: 3    AARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQ 62

Query: 377  DQQFENRLQ--LHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINAL--QVQLLR 544
            +Q+ + R    LH  KE+K      D++ +E+ +S  EEN    +  N   L  + +LL+
Sbjct: 63   EQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEEN----ASNNFGQLGFEKKLLQ 118

Query: 545  WPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXX 724
            WP  +        +E    + + +S+ +   ++ + EP N+VALA+K             
Sbjct: 119  WPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSE 178

Query: 725  DSKLLETNFDDSNFPNFLLTNLADDKLKGQR--TVRSTRLIERQSRKRGAPKPTHEVQET 898
            D KL   + DDS   +    N     ++ +   TVRSTR +ERQS++R   +P   ++ET
Sbjct: 179  DLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV-QPKVTIRET 234

Query: 899  NRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQL 1078
              S R DVRR+++E  D NDPLR+FLWGPETKQLLT KEESEL  ++Q  M+L++VK +L
Sbjct: 235  YSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKL 294

Query: 1079 QIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNL 1258
            Q QF REPTL+EWAEA GL    LQ++L  G SSR+KLI ANLRMVVHIAKQYQ RGL+L
Sbjct: 295  QSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSL 354

Query: 1259 QDLLQEGSMGLMKSVEKFKPQAGCRF 1336
            QDLLQEGSMGLMKSVE+FKPQ GCRF
Sbjct: 355  QDLLQEGSMGLMKSVERFKPQVGCRF 380


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  309 bits (792), Expect = 2e-81
 Identities = 181/384 (47%), Positives = 242/384 (63%), Gaps = 8/384 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSS--------VLMLHEHAAPTLTSVPHAYLARHVPAS 364
            AGRNLLSSPP+F  +T++++ LSSS        VLM +E +AP + SVP + +ARH P S
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTS 62

Query: 365  VINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLR 544
            V+  +Q+ E R  LH  KE+KTS AT D R +E  +  +EE  + D ++ +  L+ Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 545  WPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXX 724
            WP      P     E   +SL  +SL +  ++  + EP + VALARK             
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 725  DSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNR 904
            + KL    F D +     LT+     L+  +TVRSTR +ER+S+KR   KP     ET  
Sbjct: 183  NPKLNGAEFTDIS-----LTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYN 237

Query: 905  SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084
            S +  V+++++E  D NDPLR+FLWGPET++LLT  EE EL+ +IQ  ++L++ K +LQ 
Sbjct: 238  SRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297

Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264
            QF REPTLI       L+  +L+S+L  G SSREKLINANLR+VVH+AKQYQGRG+ L D
Sbjct: 298  QFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357

Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336
            LLQEGSMGLMKSVEKFKPQAGCRF
Sbjct: 358  LLQEGSMGLMKSVEKFKPQAGCRF 381


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  308 bits (788), Expect = 4e-81
 Identities = 177/376 (47%), Positives = 237/376 (63%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388
            AGRNLLSSPP+F  +T++++ LSSS       +AP + SVP + +ARH P SV+  +Q+ 
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRD 62

Query: 389  ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568
            E R  LH  KE+KTS AT D R +E  +  +EE  + D ++ +  L+ Q L WP      
Sbjct: 63   EYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLS 122

Query: 569  PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748
            P     E   +SL  +SL +  ++  + EP + VALARK             + KL    
Sbjct: 123  PPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAE 182

Query: 749  FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928
            F D +     LT+     L+  +TVRSTR +ER+S+KR   KP     ET  S +  V++
Sbjct: 183  FTDIS-----LTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKK 237

Query: 929  RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108
            +++E  D NDPLR+FLWGPET++LLT  EE EL+ +IQ  ++L++ K +LQ QF REPTL
Sbjct: 238  KLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 297

Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288
            I       L+  +L+S+L  G SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEGSMG
Sbjct: 298  ILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMG 357

Query: 1289 LMKSVEKFKPQAGCRF 1336
            LMKSVEKFKPQAGCRF
Sbjct: 358  LMKSVEKFKPQAGCRF 373


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  300 bits (769), Expect = 7e-79
 Identities = 175/376 (46%), Positives = 237/376 (63%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388
            AGRNLLSSPP+F  +T++++ LSSS       ++ ++ SVP + +ARH P SV+  +Q+ 
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSA---SSSSSSSVASVPTSSVARHFPTSVLLQEQRD 59

Query: 389  ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568
            E R  LH  KE+KTS AT D R +E  +  +EE  + D ++ +  L+ Q L WP      
Sbjct: 60   EYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLS 119

Query: 569  PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748
            P     E   +SL  +SL +  ++  + EP + VALARK             + KL    
Sbjct: 120  PPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAE 179

Query: 749  FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928
            F D +     LT+     L+  +TVRSTR +ER+S+KR   KP     ET  S +  V++
Sbjct: 180  FTDIS-----LTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKK 234

Query: 929  RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108
            +++E  D NDPLR+FLWGPET++LLT  EE EL+ +IQ  ++L++ K +LQ QF REPTL
Sbjct: 235  KLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 294

Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288
            I       L+  +L+S+L  G SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEGSMG
Sbjct: 295  ILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMG 354

Query: 1289 LMKSVEKFKPQAGCRF 1336
            LMKSVEKFKPQAGCRF
Sbjct: 355  LMKSVEKFKPQAGCRF 370


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  300 bits (768), Expect = 9e-79
 Identities = 181/389 (46%), Positives = 234/389 (60%), Gaps = 10/389 (2%)
 Frame = +2

Query: 200  MEVAGRNLLSSPPTFSQKTQLRNCLSSS-------VLMLHEHAAPTLTSVPHAYLARHVP 358
            ME A R  LSSPP F  +T  +N LSSS       V MLHE A P +TS P   +AR+ P
Sbjct: 1    META-RTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFP 59

Query: 359  ASVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQL 538
             SV+  +Q+ E R  L+  KE+KT  AT+D + ++  +S   + E + S+     +    
Sbjct: 60   TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTS---DQEGICSDVLDQLILHSN 116

Query: 539  LRWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXX 718
            L W                  SL  +S+ +  D+L   EP NV+ LARK           
Sbjct: 117  LSW------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASK----- 153

Query: 719  XXDSKLLE---TNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEV 889
              ++ LL     N DD+       T+L++  L+  +TVRSTR +ERQS+ R   K     
Sbjct: 154  --EAALLAQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIF 211

Query: 890  QETNRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVK 1069
             E   S R  V++++NE  D  DPLR+FLWGPETKQLLT KEESEL+ ++Q  M L+ VK
Sbjct: 212  HEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVK 271

Query: 1070 HQLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRG 1249
             + ++QF R+PTL+EWA+A GL+   +QSQL  G  SREKLINANLRMVVHIAKQYQGRG
Sbjct: 272  EKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRG 331

Query: 1250 LNLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336
            L+LQDLLQEGSMGLMKS+EKFKPQ GCRF
Sbjct: 332  LSLQDLLQEGSMGLMKSIEKFKPQVGCRF 360


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  299 bits (765), Expect = 2e-78
 Identities = 182/391 (46%), Positives = 236/391 (60%), Gaps = 15/391 (3%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCL---------------SSSVLMLHEHAAPTLTSVPHAYL 343
            AG NLLSS   F  +   R+ L               SSSV M  E A+P          
Sbjct: 3    AGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASP---------- 52

Query: 344  ARHVPASVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINA 523
            AR+   S ++ +Q  E R Q   +K++++S  T++RRL+E  S  ++E    D +  I  
Sbjct: 53   ARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIE-RSVPIDEGSRDDHDHLIWE 111

Query: 524  LQVQLLRWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXX 703
            L+ Q + WPG   S+P   ++E    S++ ES  + G+ L   EP NV+ALA+K      
Sbjct: 112  LKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASK 171

Query: 704  XXXXXXXDSKLLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTH 883
                   +++L+ T+ D S+        L D   K  RTVRSTRL +R+S+KR  PK   
Sbjct: 172  QAALLVDETELVGTSLDYSS--------LDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVT 223

Query: 884  EVQETNRSGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQE 1063
             + E +     D RR+ +E  D NDPLR+FLWGPETK+LLT +EESEL+V+IQ  M L  
Sbjct: 224  TIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDN 283

Query: 1064 VKHQLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQG 1243
            VK +LQ QF REPTL+EWAEA G+T   LQSQL   ++SREKLINANLRMVVHIAKQYQG
Sbjct: 284  VKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQG 343

Query: 1244 RGLNLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336
            RGL+L DLLQ GS+GLMKSVEKFKPQAGCRF
Sbjct: 344  RGLSLHDLLQVGSLGLMKSVEKFKPQAGCRF 374


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  295 bits (755), Expect = 3e-77
 Identities = 175/380 (46%), Positives = 241/380 (63%), Gaps = 1/380 (0%)
 Frame = +2

Query: 200  MEVAGRNLLSSPPTFSQKTQLRNCL-SSSVLMLHEHAAPTLTSVPHAYLARHVPASVINP 376
            MEV GRNLLS PP+F  +T LRN L SSS      + A  +TS+P   +A+    SV+  
Sbjct: 1    MEV-GRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQ 59

Query: 377  DQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGP 556
            +Q+ E +  L   KE+KTS   ++RR   D+ + + E+   D  + +   +   + WPG 
Sbjct: 60   EQRDEFKPLLRVNKEDKTSQGVLNRRQ-NDSGALVHEDTLEDYNQFVWEFERPSVHWPGF 118

Query: 557  SYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKL 736
             +  PS   K K   SL  E+      K  + E  + +ALA+K             +SKL
Sbjct: 119  WHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKL 178

Query: 737  LETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRP 916
            + T+ DD    +FL         KG +TVRSTRL+ER+S++R  P+ +    E  R+   
Sbjct: 179  VGTDSDDMLSVSFLG--------KGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAA 230

Query: 917  DVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAR 1096
            D+R+R++E ++ +DPLR+FL GPET+QLLT +EESEL+ ++Q  +KL++VK +LQ +F R
Sbjct: 231  DIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEFGR 290

Query: 1097 EPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQE 1276
            EPTL+EWAEA GL+   LQSQ++ G SSREKLI ANLR+VVHIAKQYQGRG+ +QDL+QE
Sbjct: 291  EPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLMQE 350

Query: 1277 GSMGLMKSVEKFKPQAGCRF 1336
            GSMGLMKSVEKFKPQ GCRF
Sbjct: 351  GSMGLMKSVEKFKPQVGCRF 370


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  294 bits (752), Expect = 7e-77
 Identities = 172/376 (45%), Positives = 230/376 (61%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388
            AGR LLSS P+F  +T L+N L+SSVL+L E A P ++S+P    A+H P SV+  +Q+ 
Sbjct: 3    AGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRD 62

Query: 389  ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568
            E R   +  KE++ S AT+DRR  E  +S  E  ++ + ++ +   + QL  WP      
Sbjct: 63   EFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP------ 116

Query: 569  PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748
                            +  +  DKL + EP NV+ LA++                L + N
Sbjct: 117  ----------------AYWNLTDKLIDVEPTNVINLAKRALSASKHAAF------LADNN 154

Query: 749  FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928
             D  N  +   T+ +   L+  + VRS R + RQS  R APK    + ET  S   DV++
Sbjct: 155  TDLDNLAS---TSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQK 211

Query: 929  RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108
            R+++  D NDPLR+FLWGPETKQLLT KEE EL+ +IQ  M L+ VK++L+ QF REPTL
Sbjct: 212  RLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTL 271

Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288
            +EWA+A GL+   L+ QL  G  SREKLINANLRMVVHIAK+YQ RGL LQDLLQEG++G
Sbjct: 272  VEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVG 331

Query: 1289 LMKSVEKFKPQAGCRF 1336
            LMKS+EKFKPQAGCRF
Sbjct: 332  LMKSIEKFKPQAGCRF 347


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  293 bits (751), Expect = 9e-77
 Identities = 171/376 (45%), Positives = 230/376 (61%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPDQQF 388
            AGR LLSS P+F  +T L+N L+SSVL+L E A P ++S+P    A+H P SV+  +Q+ 
Sbjct: 3    AGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRD 62

Query: 389  ENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPSYSF 568
            E R   +  KE++ S AT+DRR  E  +S  E  ++ + ++ +   + QL  WP      
Sbjct: 63   EFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP------ 116

Query: 569  PSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSKLLETN 748
                            +  +  DKL + EP NV+ LA++                L + N
Sbjct: 117  ----------------AYWNLTDKLIDVEPTNVINLAKRALSASKHAAF------LADNN 154

Query: 749  FDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSGRPDVRR 928
             D  N  +   T+ +   L+  + VRS R + RQS  R APK    + ET  S   D+++
Sbjct: 155  TDLDNLAS---TSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQK 211

Query: 929  RVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQIQFAREPTL 1108
            R+++  D NDPLR+FLWGPETKQLLT KEE EL+ +IQ  M L+ VK++L+ QF REPTL
Sbjct: 212  RLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTL 271

Query: 1109 IEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMG 1288
            +EWA+A GL+   L+ QL  G  SREKLINANLRMVVHIAK+YQ RGL LQDLLQEG++G
Sbjct: 272  VEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVG 331

Query: 1289 LMKSVEKFKPQAGCRF 1336
            LMKS+EKFKPQAGCRF
Sbjct: 332  LMKSIEKFKPQAGCRF 347


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  289 bits (740), Expect = 2e-75
 Identities = 182/384 (47%), Positives = 234/384 (60%), Gaps = 8/384 (2%)
 Frame = +2

Query: 209  AGRNLLSSPPTFSQKTQLRNCL-----SSSVLMLHEHAAPTLTSVPHAYLARHVPASVIN 373
            AGR+ LSS   F   TQLR+ L     S+SVLMLHE AAP +TSVP +++ RH P SV+ 
Sbjct: 3    AGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSVLL 62

Query: 374  PDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPG 553
             +Q+ E +  LH  KEEK S AT+DR  +E+ ++  EE+  +D    +     QL   P 
Sbjct: 63   QEQRDEFKPLLHIFKEEKASQATLDRIQIENTTA--EEDFNIDDFYKLVKDFRQLHVTPS 120

Query: 554  PSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSK 733
                     + E  P     ES  +  +   + EP +V+ LA+               SK
Sbjct: 121  --------QIGENSPTGSALES-NTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSK 171

Query: 734  LLETNFDDSNFPNFLLTNLADDKLKGQRTVRSTRLIERQSR---KRGAPKPTHEVQETNR 904
             +    ++S       T+L       + TVRST+L+ER+ +   KR          E + 
Sbjct: 172  SISAGLNES-------TSLGLGW--EEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSS 222

Query: 905  SGRPDVRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKHQLQI 1084
            S   D+RR+  E ++ NDPLR+FLWGPET+QLLT+KEE+EL+ ++Q   KL+ VK +LQ 
Sbjct: 223  SNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQS 282

Query: 1085 QFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGLNLQD 1264
            QF REPTLIEWAEA G++   LQSQLR G SSREKLI +NLRMVVHIAKQYQGRGL LQD
Sbjct: 283  QFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQD 342

Query: 1265 LLQEGSMGLMKSVEKFKPQAGCRF 1336
            LLQEGSMGLMKSVEKFKPQAGCRF
Sbjct: 343  LLQEGSMGLMKSVEKFKPQAGCRF 366


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  281 bits (720), Expect = 3e-73
 Identities = 178/392 (45%), Positives = 235/392 (59%), Gaps = 13/392 (3%)
 Frame = +2

Query: 200  MEVAGRNLLSSPPTFSQKTQL------RNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPA 361
            ME A     SSPP F  +T         +  +SSVLMLHE A+PT+ S    + A++ PA
Sbjct: 1    MEFARTMFCSSPP-FPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPA 59

Query: 362  SVINPDQQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLL 541
            SV+ P+Q+ E R  LH  KE+KTS A +  R + D  +  EEN   ++++ +   +  L 
Sbjct: 60   SVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM-DTVTVHEENNTENADQVVLDFRKHLH 118

Query: 542  RWPGPSYSFPSYHLKEKGPLSLDTESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXX 721
             WP   Y   S  + E    S   E +    ++  N    N V+LA+K            
Sbjct: 119  HWPNLQYLLTSSQIGEVAASST-LEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVV 177

Query: 722  XDSKLLETNFDDSNFPNFLL-TNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQET 898
             D K ++   DD + P  L  T+LAD  +   +TVRSTRL+ER+S++R  PK      ET
Sbjct: 178  EDLKSIKA--DDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDET 235

Query: 899  NRSGRPDVRRRV------NESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQ 1060
              + + D + ++      NE +D +DPLR+FLWGPETKQLLT+++ES+L+ +IQ  ++L+
Sbjct: 236  YLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLE 295

Query: 1061 EVKHQLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQ 1240
            EVK  LQ QF REPT+ EWAE AGL    LQSQL  G  SREKLI ANLRMVVH+AK YQ
Sbjct: 296  EVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQ 355

Query: 1241 GRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336
            GRGL+LQDLLQEGSMGLMKSVEKF P AG RF
Sbjct: 356  GRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRF 387


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  260 bits (665), Expect = 8e-67
 Identities = 170/388 (43%), Positives = 226/388 (58%), Gaps = 14/388 (3%)
 Frame = +2

Query: 215  RNLLSSPPTFSQKTQ-----LRNCLSSSVLMLHEHAAPTLTSVPHAYLARHVPASVINPD 379
            R +  S P F  +T      L    S+SVLML E A+PT+ S    + A++ PASV+  +
Sbjct: 5    RTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQE 64

Query: 380  QQFENRLQLHPVKEEKTSLATIDRRLVEDASSKLEENEAVDSEKNINALQVQLLRWPGPS 559
            Q+ E R  LH  KE+KTS A +  R + D     EEN   ++++ +   +  L  WP   
Sbjct: 65   QRDEYRPLLHMSKEDKTSQAMLSTRQM-DTVMVHEENNTENADQVVLDFRKHLHYWPHLQ 123

Query: 560  YSFPSYHLKEKGPLSLDT--ESLQSKGDKLKNFEPHNVVALARKXXXXXXXXXXXXXDSK 733
                S    + G +S  +  + + S  D+  N    N V+LA+K             D K
Sbjct: 124  NLLAS---SQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLK 180

Query: 734  LLETNFDDSNFPNFLL-TNLADDKLKGQRTVRSTRLIERQSRKRGAPKPTHEVQETNRSG 910
             ++   DD + P  L  T LAD  +   +TVRSTRL+ER+S++R  PK      ET  + 
Sbjct: 181  SIKA--DDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLAR 238

Query: 911  RPD------VRRRVNESIDLNDPLRMFLWGPETKQLLTVKEESELVVKIQCSMKLQEVKH 1072
            + D      V ++ NE +D NDPL  FL GPETKQLLT+++ES+L+ +IQ  ++L+EVK 
Sbjct: 239  KDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKT 298

Query: 1073 QLQIQFAREPTLIEWAEAAGLTSLELQSQLRYGKSSREKLINANLRMVVHIAKQYQGRGL 1252
            +LQ QF REPT+ EWAE  GL    L +QLR G  SREKLI ANLRMVVH+AK YQGRGL
Sbjct: 299  KLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGL 358

Query: 1253 NLQDLLQEGSMGLMKSVEKFKPQAGCRF 1336
            +LQDLLQEGSMGLMKSVEKF P  G RF
Sbjct: 359  SLQDLLQEGSMGLMKSVEKFNPLVGSRF 386