BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00007431
         (1314 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   591   e-166
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   581   e-163
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   324   6e-86
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   322   2e-85
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   322   3e-85
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   316   1e-83
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              310   9e-82
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   310   1e-81
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   308   4e-81
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   306   2e-80
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   300   9e-79
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   299   2e-78
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   294   6e-77
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   293   1e-76
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   290   1e-75
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     288   3e-75
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   286   1e-74
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   285   3e-74
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           285   4e-74
gb|ESW16353.1| hypothetical protein PHAVU_007G149600g [Phaseolus...   274   7e-71

>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  591 bits (1523), Expect = e-166
 Identities = 310/383 (80%), Positives = 327/383 (85%)
 Frame = +2

Query: 164  MEVAGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVI 343
            ME AGRNLLSSPPTFSQKTQLRNC    SSSVLMLHEHAAP L SVPHAYL RHVPAS I
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLRNC----SSSVLMLHEHAAPVLSSVPHAYLGRHVPASAI 56

Query: 344  NPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWP 523
             P+QQFENRLQLH +KE+KTSLATIDRRLV+ ASSELEEN+ VDSEQNINALQVQLLR P
Sbjct: 57   GPEQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCP 116

Query: 524  GPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDS 703
            GPSYSFP Y+LK KG LS + E L +KGDK+ NFEPH+VVAL RK             DS
Sbjct: 117  GPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDS 176

Query: 704  KLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSG 883
            KLL    DDSNFPNFLSTNL DDKLK QRTVRSTR  ERQSRKRGA K T QVQETNRSG
Sbjct: 177  KLL----DDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSG 232

Query: 884  RPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQF 1063
            RPDVRR+VNE IDLNDPLRMFLWGPETKQLLT KEESELIVKIQ SMKLQEVKHQLQ+QF
Sbjct: 233  RPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQF 292

Query: 1064 AREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLL 1243
            A EPT +EWAEAAG+TSREL+SQL   KSSREKLINANLRMVVHIAKQYQGRGL+LQDLL
Sbjct: 293  AHEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLL 352

Query: 1244 QEGSMGLMKSVEKFNPEAGCRFP 1312
            QEGSMGLMKSVEKF P+AGCRFP
Sbjct: 353  QEGSMGLMKSVEKFKPQAGCRFP 375


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  581 bits (1497), Expect = e-163
 Identities = 306/384 (79%), Positives = 326/384 (84%), Gaps = 1/384 (0%)
 Frame = +2

Query: 164  MEVAGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVI 343
            ME AGRNLLSSPPTFSQKTQLRNC    SSSVLMLHEHAAP L SVPH YL R+VPAS I
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLRNC----SSSVLMLHEHAAPVLSSVPHTYLGRYVPASAI 56

Query: 344  NPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWP 523
             P+Q FENRLQLH +KE+KTSLATIDRRLVE ASSELEEN+ VDSEQNINALQVQLL WP
Sbjct: 57   GPEQHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWP 116

Query: 524  GPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDS 703
            GPSYSFP Y+LK KG LS + E L +KGDK+ NFEPH+VVAL RK             DS
Sbjct: 117  GPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDS 176

Query: 704  KLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETN-RS 880
            KLL    DDS+FPNFLST+L DDKLK QRTVRSTR IERQSRKRGA K   +VQETN RS
Sbjct: 177  KLL----DDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRS 232

Query: 881  GRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQ 1060
            GRPDVRR+VNE IDLNDPLRMFLWGPETKQLLT KEESELIVKIQ SMKLQEVKHQLQ+Q
Sbjct: 233  GRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQ 292

Query: 1061 FAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDL 1240
            FAREPT +EWAEAAG+TSREL+SQL   KSSREKLINANLRMVVHIAKQYQGRGL+LQDL
Sbjct: 293  FAREPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDL 352

Query: 1241 LQEGSMGLMKSVEKFNPEAGCRFP 1312
            LQEGSMGLMKSVEKF P+AGCRFP
Sbjct: 353  LQEGSMGLMKSVEKFKPQAGCRFP 376


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  324 bits (830), Expect = 6e-86
 Identities = 186/384 (48%), Positives = 246/384 (64%), Gaps = 5/384 (1%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRN-----CPSSISSSVLMLHEHAAPALMSVPHAYLARHVPAS 337
            AGRNLLSSPP+F  +T++++       SS SSSVLM +E +APA+ SVP + +ARH P S
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTS 62

Query: 338  VINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLR 517
            V+  +Q+ E R  LH  KEDKTS AT D R +E  +  +EE  + D +Q +  L+ Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 518  WPGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXX 697
            WP      P     E   +SL  +SL    ++  + EP + VAL RK             
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 698  DSKLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNR 877
            + KL    F D +  + L   L + K     TVRST+ +ER+S+KR  +K      ET  
Sbjct: 183  NPKLNGAEFTDISLTSSLGYPLEEVK-----TVRSTQFLERRSKKRKVSKPKVTNHETYN 237

Query: 878  SGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQM 1057
            S +  V+++++E  D NDPLR+FLWGPET++LLT  EE ELI +IQ  ++L++ K +LQ 
Sbjct: 238  SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297

Query: 1058 QFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQD 1237
            QF REPTLIEWA+A GL+ R+L+S+L    SSREKLINANLR+VVH+AKQYQGRG+ L D
Sbjct: 298  QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357

Query: 1238 LLQEGSMGLMKSVEKFNPEAGCRF 1309
            LLQEGSMGLMKSVEKF P+AGCRF
Sbjct: 358  LLQEGSMGLMKSVEKFKPQAGCRF 381


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  322 bits (825), Expect = 2e-85
 Identities = 185/385 (48%), Positives = 246/385 (63%), Gaps = 6/385 (1%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNC------PSSISSSVLMLHEHAAPALMSVPHAYLARHVPA 334
            AGRNLLSSPP+F  +T++++        SS SS+VLM +E +APA+ SVP + +ARH P 
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHFPT 62

Query: 335  SVINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLL 514
            SV+  +Q+ E R  LH  KEDKTS AT D R +E  +  +EE  + D +Q +  L+ Q L
Sbjct: 63   SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 122

Query: 515  RWPGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXX 694
             WP      P     E   +SL  +SL    ++  + EP + VAL RK            
Sbjct: 123  HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 182

Query: 695  XDSKLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETN 874
             + KL    F D +  + L   L + K     TVRST+ +ER+S+KR  +K      ET 
Sbjct: 183  ENPKLNGAEFTDISLTSSLGYPLEEVK-----TVRSTQFLERRSKKRKVSKPKVTNHETY 237

Query: 875  RSGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQ 1054
             S +  V+++++E  D NDPLR+FLWGPET++LLT  EE ELI +IQ  ++L++ K +LQ
Sbjct: 238  NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 297

Query: 1055 MQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQ 1234
             QF REPTLIEWA+A GL+ R+L+S+L    SSREKLINANLR+VVH+AKQYQGRG+ L 
Sbjct: 298  SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 357

Query: 1235 DLLQEGSMGLMKSVEKFNPEAGCRF 1309
            DLLQEGSMGLMKSVEKF P+AGCRF
Sbjct: 358  DLLQEGSMGLMKSVEKFKPQAGCRF 382


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  322 bits (824), Expect = 3e-85
 Identities = 195/385 (50%), Positives = 249/385 (64%), Gaps = 6/385 (1%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNC--PSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVIN 346
            AGR+ LSS   F   T LR+    SS S+SVLMLHE A PA+ SVP   +ARH P SV+ 
Sbjct: 3    AGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLL 62

Query: 347  PDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPG 526
             +Q+ E +  LH LKEDKTS A +DR  +E  +S  E+ +  D    +N+ + QLL    
Sbjct: 63   QEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDI 122

Query: 527  PSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSK 706
                F S     K    L  ESL T  +K  + EP NVVAL +K             DS+
Sbjct: 123  LDV-FSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQ 181

Query: 707  LLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQ----ETN 874
             +   FDD  +     T+LA+  ++ ++TVRSTR++ER+ RKR  T+   + +    E+N
Sbjct: 182  SMGADFDDLGY-----TSLANWIVEEEKTVRSTRILERR-RKRIKTRKVPKSKVIGHESN 235

Query: 875  RSGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQ 1054
                 DVR++++E  + NDPLR+FLWGPET+QLLT KEE+ELI ++Q   KL+EVK +LQ
Sbjct: 236  SFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQ 295

Query: 1055 MQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQ 1234
             QF REPTLIEWAEA G++ + L+SQLR   SSREKLI ANLRMVVHIAKQYQGRGL LQ
Sbjct: 296  TQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQ 355

Query: 1235 DLLQEGSMGLMKSVEKFNPEAGCRF 1309
            DL+QEGSMGLMKSVEKF P+AGCRF
Sbjct: 356  DLMQEGSMGLMKSVEKFKPQAGCRF 380


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  316 bits (810), Expect = 1e-83
 Identities = 181/379 (47%), Positives = 241/379 (63%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINPD 352
            AGRNLLSSPP+F  +T++++   S+SSS       +APA+ SVP + +ARH P SV+  +
Sbjct: 3    AGRNLLSSPPSFPSRTRVKH---SLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQE 59

Query: 353  QQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPGPS 532
            Q+ E R  LH  KEDKTS AT D R +E  +  +EE  + D +Q +  L+ Q L WP   
Sbjct: 60   QRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLW 119

Query: 533  YSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSKLL 712
               P     E   +SL  +SL    ++  + EP + VAL RK             + KL 
Sbjct: 120  NLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLN 179

Query: 713  ETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSGRPD 892
               F D +  + L   L + K     TVRST+ +ER+S+KR  +K      ET  S +  
Sbjct: 180  GAEFTDISLTSSLGYPLEEVK-----TVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 893  VRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQFARE 1072
            V+++++E  D NDPLR+FLWGPET++LLT  EE ELI +IQ  ++L++ K +LQ QF RE
Sbjct: 235  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 1073 PTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEG 1252
            PTLIEWA+A GL+ R+L+S+L    SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 1253 SMGLMKSVEKFNPEAGCRF 1309
            SMGLMKSVEKF P+AGCRF
Sbjct: 355  SMGLMKSVEKFKPQAGCRF 373


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  310 bits (794), Expect = 9e-82
 Identities = 186/380 (48%), Positives = 247/380 (65%), Gaps = 1/380 (0%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINPD 352
            AG N+LSS P+F  +T  RN     SSSVLMLH+  APA+ S+P   +AR  P SV+  +
Sbjct: 3    AGTNILSSTPSFPPRTHFRNS----SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQE 57

Query: 353  QQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPGPS 532
            Q+ E R     LK+++T  AT+++R +E   S  EEN    ++  +N  + QLL  PG  
Sbjct: 58   QRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVN-FERQLLLQPGLW 116

Query: 533  YSFPSYHLKEKGLLSLDT-ESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSKL 709
            YS PS    EK   S    +S+ T  +   + +P +V+AL +K             ++KL
Sbjct: 117  YSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKL 176

Query: 710  LETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSGRP 889
            L    +DS  P+  + +  +  L+ ++TVRSTRL+ER+S+KR   K+   V E + S R 
Sbjct: 177  LGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPKVA--VHENHGSRRA 233

Query: 890  DVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQFAR 1069
            +V+R++NE  D  DPLR+FLWGPET++LLT KEESELIV+IQ  M+L+EVK +LQ    R
Sbjct: 234  EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKR 293

Query: 1070 EPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLLQE 1249
            EPT++EWAEA GL+ + LQSQL     SR+KLI ANLRMVVHIAKQYQGRGL+LQDLLQE
Sbjct: 294  EPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQE 353

Query: 1250 GSMGLMKSVEKFNPEAGCRF 1309
            GSMGLM SVEKF P AGCRF
Sbjct: 354  GSMGLMNSVEKFKPNAGCRF 373


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  310 bits (793), Expect = 1e-81
 Identities = 189/385 (49%), Positives = 245/385 (63%), Gaps = 6/385 (1%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCP-SSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINP 349
            A RNLLS PPTFS +TQL++   S+ SSSVLM HE AAPA  S+P   +ARH P SV+  
Sbjct: 3    AARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQ 62

Query: 350  DQQFENRLQ--LHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWP 523
            +Q+ + R    LH  KEDK      D++ +E+ +S  EEN + +  Q     + +LL+WP
Sbjct: 63   EQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKLLQWP 120

Query: 524  GPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDS 703
              +        +E    + + +S+     ++ + EP N+VAL +K             D 
Sbjct: 121  DLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSEDL 180

Query: 704  KLLETHFDDSNFPNFLSTNLADDKLKGQR--TVRSTRLIERQS-RKRGATKLTHQVQETN 874
            KL     DDS   +  S N     ++ +   TVRSTR +ERQS R+R   K+T  ++ET 
Sbjct: 181  KL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVT--IRETY 235

Query: 875  RSGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQ 1054
             S R DVRR+++E  D NDPLR+FLWGPETKQLLT KEESEL  ++Q  M+L++VK +LQ
Sbjct: 236  SSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQ 295

Query: 1055 MQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQ 1234
             QF REPTL+EWAEA GL    LQ++L    SSR+KLI ANLRMVVHIAKQYQ RGLSLQ
Sbjct: 296  SQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQ 355

Query: 1235 DLLQEGSMGLMKSVEKFNPEAGCRF 1309
            DLLQEGSMGLMKSVE+F P+ GCRF
Sbjct: 356  DLLQEGSMGLMKSVERFKPQVGCRF 380


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  308 bits (788), Expect = 4e-81
 Identities = 182/384 (47%), Positives = 240/384 (62%), Gaps = 5/384 (1%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRN-----CPSSISSSVLMLHEHAAPALMSVPHAYLARHVPAS 337
            AGRNLLSSPP+F  +T++++       SS SSSVLM +E +APA+ SVP + +ARH P S
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTS 62

Query: 338  VINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLR 517
            V+  +Q+ E R  LH  KEDKTS AT D R +E  +  +EE  + D +Q +  L+ Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 518  WPGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXX 697
            WP      P     E   +SL  +SL    ++  + EP + VAL RK             
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 698  DSKLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNR 877
            + KL    F D +  + L   L + K     TVRSTR +ER+S+KR  +K      ET  
Sbjct: 183  NPKLNGAEFTDISLTSSLGYPLEEVK-----TVRSTRFLERRSKKRKVSKPKVTNHETYN 237

Query: 878  SGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQM 1057
            S +  V+++++E  D NDPLR+FLWGPET++LLT  EE ELI +IQ  ++L++ K +LQ 
Sbjct: 238  SRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297

Query: 1058 QFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQD 1237
            QF REPTLI       L+ R+L+S+L    SSREKLINANLR+VVH+AKQYQGRG+ L D
Sbjct: 298  QFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357

Query: 1238 LLQEGSMGLMKSVEKFNPEAGCRF 1309
            LLQEGSMGLMKSVEKF P+AGCRF
Sbjct: 358  LLQEGSMGLMKSVEKFKPQAGCRF 381


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  306 bits (783), Expect = 2e-80
 Identities = 185/387 (47%), Positives = 247/387 (63%), Gaps = 8/387 (2%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSS-------ISSSVLMLHEHAAPALMSVPHAYLARHVP 331
            AG N+LSS P+F  +T  RN  SS       +   VLMLH+  APA+ S+P   +AR  P
Sbjct: 3    AGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARKFP 61

Query: 332  ASVINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQL 511
             SV+  +Q+ E R     LK+++T  AT+++R +E   S  EEN    ++  +N  + QL
Sbjct: 62   TSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVN-FERQL 120

Query: 512  LRWPGPSYSFPSYHLKEKGLLSLDT-ESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXX 688
            L  PG  YS PS    EK   S    +S+ T  +   + +P +V+AL +K          
Sbjct: 121  LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 180

Query: 689  XXXDSKLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQE 868
               ++KLL    +DS  P+  + +  +  L+ ++TVRSTRL+ER+S+KR   K+   V E
Sbjct: 181  LYENAKLLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPKVA--VHE 237

Query: 869  TNRSGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQ 1048
             + S R +V+R++NE  D  DPLR+FLWGPET++LLT KEESELIV+IQ  M+L+EVK +
Sbjct: 238  NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 297

Query: 1049 LQMQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLS 1228
            LQ    REPT++EWAEA GL+ + LQSQL     SR+KLI ANLRMVVHIAKQYQGRGL+
Sbjct: 298  LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 357

Query: 1229 LQDLLQEGSMGLMKSVEKFNPEAGCRF 1309
            LQDLLQEGSMGLM SVEKF P AGCRF
Sbjct: 358  LQDLLQEGSMGLMNSVEKFKPNAGCRF 384


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  300 bits (768), Expect = 9e-79
 Identities = 177/379 (46%), Positives = 235/379 (62%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINPD 352
            AGRNLLSSPP+F  +T++++   S+SSS       +APA+ SVP + +ARH P SV+  +
Sbjct: 3    AGRNLLSSPPSFPSRTRVKH---SLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQE 59

Query: 353  QQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPGPS 532
            Q+ E R  LH  KEDKTS AT D R +E  +  +EE  + D +Q +  L+ Q L WP   
Sbjct: 60   QRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLW 119

Query: 533  YSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSKLL 712
               P     E   +SL  +SL    ++  + EP + VAL RK             + KL 
Sbjct: 120  NLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLN 179

Query: 713  ETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSGRPD 892
               F D +  + L   L + K     TVRSTR +ER+S+KR  +K      ET  S +  
Sbjct: 180  GAEFTDISLTSSLGYPLEEVK-----TVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 893  VRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQFARE 1072
            V+++++E  D NDPLR+FLWGPET++LLT  EE ELI +IQ  ++L++ K +LQ QF RE
Sbjct: 235  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 1073 PTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEG 1252
            PTLI       L+ R+L+S+L    SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 1253 SMGLMKSVEKFNPEAGCRF 1309
            SMGLMKSVEKF P+AGCRF
Sbjct: 355  SMGLMKSVEKFKPQAGCRF 373


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  299 bits (766), Expect = 2e-78
 Identities = 182/391 (46%), Positives = 235/391 (60%), Gaps = 12/391 (3%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRN------------CPSSISSSVLMLHEHAAPALMSVPHAYL 316
            AG NLLSS   F  +   R+              SS SSSV M  E A+PA         
Sbjct: 3    AGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPA--------- 53

Query: 317  ARHVPASVINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINA 496
             R+   S ++ +Q  E R Q   LK+D++S  T++RRL+E  S  ++E    D +  I  
Sbjct: 54   -RYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIE-RSVPIDEGSRDDHDHLIWE 111

Query: 497  LQVQLLRWPGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXX 676
            L+ Q + WPG   S+P   ++E  + S++ ES    G+ +   EP NV+AL +K      
Sbjct: 112  LKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASK 171

Query: 677  XXXXXXXDSKLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTH 856
                   +++L+ T  D S+  + LS        K  RTVRSTRL +R+S+KR   K   
Sbjct: 172  QAALLVDETELVGTSLDYSSLDDSLS--------KEGRTVRSTRLQDRRSKKRKVPKHVT 223

Query: 857  QVQETNRSGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQE 1036
             + E +     D RR+ +E  D NDPLR+FLWGPETK+LLT +EESELIV+IQ  M L  
Sbjct: 224  TIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDN 283

Query: 1037 VKHQLQMQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQG 1216
            VK +LQ QF REPTL+EWAEA G+T + LQSQL   ++SREKLINANLRMVVHIAKQYQG
Sbjct: 284  VKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQG 343

Query: 1217 RGLSLQDLLQEGSMGLMKSVEKFNPEAGCRF 1309
            RGLSL DLLQ GS+GLMKSVEKF P+AGCRF
Sbjct: 344  RGLSLHDLLQVGSLGLMKSVEKFKPQAGCRF 374


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  294 bits (752), Expect = 6e-77
 Identities = 178/389 (45%), Positives = 232/389 (59%), Gaps = 7/389 (1%)
 Frame = +2

Query: 164  MEVAGRNLLSSPPTFSQKTQLRNCPSS----ISSSVLMLHEHAAPALMSVPHAYLARHVP 331
            ME A R  LSSPP F  +T  +N  SS    + + V MLHE A PA+ S P   +AR+ P
Sbjct: 1    META-RTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFP 59

Query: 332  ASVINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQL 511
             SV+  +Q+ E R  L+  KEDKT  AT+D + ++  +S+    E + S+     +    
Sbjct: 60   TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSD---QEGICSDVLDQLILHSN 116

Query: 512  LRWPGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXX 691
            L W                  SL  +S+ T  D++   EP NV+ L RK           
Sbjct: 117  LSW------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASK----- 153

Query: 692  XXDSKLLE---THFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQV 862
              ++ LL     + DD+       T+L++  L+  +TVRSTR +ERQS+ R  TK     
Sbjct: 154  --EAALLAQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIF 211

Query: 863  QETNRSGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVK 1042
             E   S R  V++++NE  D  DPLR+FLWGPETKQLLT KEESELI ++Q  M L+ VK
Sbjct: 212  HEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVK 271

Query: 1043 HQLQMQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRG 1222
             + ++QF R+PTL+EWA+A GL+   +QSQL     SREKLINANLRMVVHIAKQYQGRG
Sbjct: 272  EKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRG 331

Query: 1223 LSLQDLLQEGSMGLMKSVEKFNPEAGCRF 1309
            LSLQDLLQEGSMGLMKS+EKF P+ GCRF
Sbjct: 332  LSLQDLLQEGSMGLMKSIEKFKPQVGCRF 360


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  293 bits (750), Expect = 1e-76
 Identities = 174/379 (45%), Positives = 234/379 (61%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINPD 352
            AGRNLLSSPP+F  +T++++  SS +SS       ++ ++ SVP + +ARH P SV+  +
Sbjct: 3    AGRNLLSSPPSFPSRTRVKHSLSSSASS------SSSSSVASVPTSSVARHFPTSVLLQE 56

Query: 353  QQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPGPS 532
            Q+ E R  LH  KEDKTS AT D R +E  +  +EE  + D +Q +  L+ Q L WP   
Sbjct: 57   QRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLW 116

Query: 533  YSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSKLL 712
               P     E   +SL  +SL    ++  + EP + VAL RK             + KL 
Sbjct: 117  NLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLN 176

Query: 713  ETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSGRPD 892
               F D +  + L   L + K     TVRSTR +ER+S+KR  +K      ET  S +  
Sbjct: 177  GAEFTDISLTSSLGYPLEEVK-----TVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 231

Query: 893  VRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQFARE 1072
            V+++++E  D NDPLR+FLWGPET++LLT  EE ELI +IQ  ++L++ K +LQ QF RE
Sbjct: 232  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 291

Query: 1073 PTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEG 1252
            PTLI       L+ R+L+S+L    SSREKLINANLR+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 292  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 351

Query: 1253 SMGLMKSVEKFNPEAGCRF 1309
            SMGLMKSVEKF P+AGCRF
Sbjct: 352  SMGLMKSVEKFKPQAGCRF 370


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  290 bits (741), Expect = 1e-75
 Identities = 184/392 (46%), Positives = 236/392 (60%), Gaps = 10/392 (2%)
 Frame = +2

Query: 164  MEVAGRNLLSSPPTFSQKTQ--LRNCPSSIS-SSVLMLHEHAAPALMSVPHAYLARHVPA 334
            ME A     SSPP F  +T       PSS S SSVLMLHE A+P + S    + A++ PA
Sbjct: 1    MEFARTMFCSSPP-FPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPA 59

Query: 335  SVINPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLL 514
            SV+ P+Q+ E R  LH  KEDKTS A +  R ++  +   EEN T +++Q +   +  L 
Sbjct: 60   SVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVH-EENNTENADQVVLDFRKHLH 118

Query: 515  RWPGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXX 694
             WP   Y   S  + E    S   E +    ++  N    N V+L +K            
Sbjct: 119  HWPNLQYLLTSSQIGEVAASST-LEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVV 177

Query: 695  XDSKLLETHFDDSNFP-NFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQET 871
             D K ++   DD + P    ST+LAD  +   +TVRSTRL+ER+S++R   K      ET
Sbjct: 178  EDLKSIKA--DDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDET 235

Query: 872  NRSGRPDVRRRV------NEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQ 1033
              + + D + ++      NE +D +DPLR+FLWGPETKQLLT+++ES+LI +IQ  ++L+
Sbjct: 236  YLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLE 295

Query: 1034 EVKHQLQMQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQ 1213
            EVK  LQ QF REPT+ EWAE AGL  R LQSQL     SREKLI ANLRMVVH+AK YQ
Sbjct: 296  EVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQ 355

Query: 1214 GRGLSLQDLLQEGSMGLMKSVEKFNPEAGCRF 1309
            GRGLSLQDLLQEGSMGLMKSVEKFNP AG RF
Sbjct: 356  GRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRF 387


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  288 bits (737), Expect = 3e-75
 Identities = 174/383 (45%), Positives = 238/383 (62%), Gaps = 1/383 (0%)
 Frame = +2

Query: 164  MEVAGRNLLSSPPTFSQKTQLRN-CPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASV 340
            MEV GRNLLS PP+F  +T LRN  PSS S+S      + A  + S+P   +A+    SV
Sbjct: 1    MEV-GRNLLSPPPSFPSRTHLRNYLPSSSSAST---SANVATGITSMPATSIAQPFSTSV 56

Query: 341  INPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRW 520
            +  +Q+ E +  L   KEDKTS   ++RR   D+ + + E+   D  Q +   +   + W
Sbjct: 57   LLQEQRDEFKPLLRVNKEDKTSQGVLNRRQ-NDSGALVHEDTLEDYNQFVWEFERPSVHW 115

Query: 521  PGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXD 700
            PG  +  PS   K K   SL  E+      K  + E  + +AL +K             +
Sbjct: 116  PGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEE 175

Query: 701  SKLLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRS 880
            SKL+ T  DD    +FL         KG +TVRSTRL+ER+S++R   + +    E  R+
Sbjct: 176  SKLVGTDSDDMLSVSFLG--------KGDKTVRSTRLLERRSKRRKVPESSVLFYENPRN 227

Query: 881  GRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQ 1060
               D+R+R++E ++ +DPLR+FL GPET+QLLT +EESELI ++Q  +KL++VK +LQ +
Sbjct: 228  RAADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSE 287

Query: 1061 FAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDL 1240
            F REPTL+EWAEA GL+ R LQSQ++   SSREKLI ANLR+VVHIAKQYQGRG+ +QDL
Sbjct: 288  FGREPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDL 347

Query: 1241 LQEGSMGLMKSVEKFNPEAGCRF 1309
            +QEGSMGLMKSVEKF P+ GCRF
Sbjct: 348  MQEGSMGLMKSVEKFKPQVGCRF 370


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  286 bits (733), Expect = 1e-74
 Identities = 179/384 (46%), Positives = 234/384 (60%), Gaps = 5/384 (1%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNC--PSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVIN 346
            AGR+ LSS   F   TQLR+   PSS S+SVLMLHE AAPA+ SVP +++ RH P SV+ 
Sbjct: 3    AGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSVLL 62

Query: 347  PDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPG 526
             +Q+ E +  LH  KE+K S AT+DR  +E+ ++E  E+  +D    +     QL   P 
Sbjct: 63   QEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAE--EDFNIDDFYKLVKDFRQLHVTPS 120

Query: 527  PSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSK 706
                     + E        ES  T  +   + EP +V+ L +               SK
Sbjct: 121  --------QIGENSPTGSALES-NTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSK 171

Query: 707  LLETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQV---QETNR 877
             +    ++S      S  L  +    + TVRST+L+ER+ ++     L +      E + 
Sbjct: 172  SISAGLNEST-----SLGLGWE----EETVRSTQLLERRRKRLKKRNLLNSKVPNYENSS 222

Query: 878  SGRPDVRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQM 1057
            S   D+RR+  E ++ NDPLR+FLWGPET+QLLT+KEE+ELI ++Q   KL+ VK +LQ 
Sbjct: 223  SNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQS 282

Query: 1058 QFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQD 1237
            QF REPTLIEWAEA G++ + LQSQLR   SSREKLI +NLRMVVHIAKQYQGRGL LQD
Sbjct: 283  QFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQD 342

Query: 1238 LLQEGSMGLMKSVEKFNPEAGCRF 1309
            LLQEGSMGLMKSVEKF P+AGCRF
Sbjct: 343  LLQEGSMGLMKSVEKFKPQAGCRF 366


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  285 bits (729), Expect = 3e-74
 Identities = 169/379 (44%), Positives = 226/379 (59%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINPD 352
            AGR LLSS P+F  +T L+N   S++SSVL+L E A PA+ S+P    A+H P SV+  +
Sbjct: 3    AGRTLLSSSPSFPTRTHLKN---SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQE 59

Query: 353  QQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPGPS 532
            Q+ E R   +  KED+ S AT+DRR  E  +S  E  ++ + +Q +   + QL  WP   
Sbjct: 60   QRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP--- 116

Query: 533  YSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSKLL 712
                               +     DK+ + EP NV+ L ++             ++  L
Sbjct: 117  -------------------AYWNLTDKLIDVEPTNVINLAKRALSASKHAAFLADNNTDL 157

Query: 713  ETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSGRPD 892
            +         N  ST+ +   L+  + VRS R + RQS  R A K    + ET  S   D
Sbjct: 158  D---------NLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSAD 208

Query: 893  VRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQFARE 1072
            V++R+++  D NDPLR+FLWGPETKQLLT KEE ELI +IQ  M L+ VK++L+ QF RE
Sbjct: 209  VQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGRE 268

Query: 1073 PTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEG 1252
            PTL+EWA+A GL+   L+ QL     SREKLINANLRMVVHIAK+YQ RGL LQDLLQEG
Sbjct: 269  PTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEG 328

Query: 1253 SMGLMKSVEKFNPEAGCRF 1309
            ++GLMKS+EKF P+AGCRF
Sbjct: 329  TVGLMKSIEKFKPQAGCRF 347


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  285 bits (728), Expect = 4e-74
 Identities = 168/379 (44%), Positives = 226/379 (59%)
 Frame = +2

Query: 173  AGRNLLSSPPTFSQKTQLRNCPSSISSSVLMLHEHAAPALMSVPHAYLARHVPASVINPD 352
            AGR LLSS P+F  +T L+N   S++SSVL+L E A PA+ S+P    A+H P SV+  +
Sbjct: 3    AGRTLLSSSPSFPTRTHLKN---SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQE 59

Query: 353  QQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRWPGPS 532
            Q+ E R   +  KED+ S AT+DRR  E  +S  E  ++ + +Q +   + QL  WP   
Sbjct: 60   QRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWP--- 116

Query: 533  YSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXDSKLL 712
                               +     DK+ + EP NV+ L ++             ++  L
Sbjct: 117  -------------------AYWNLTDKLIDVEPTNVINLAKRALSASKHAAFLADNNTDL 157

Query: 713  ETHFDDSNFPNFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNRSGRPD 892
            +         N  ST+ +   L+  + VRS R + RQS  R A K    + ET  S   D
Sbjct: 158  D---------NLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSAD 208

Query: 893  VRRRVNEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEVKHQLQMQFARE 1072
            +++R+++  D NDPLR+FLWGPETKQLLT KEE ELI +IQ  M L+ VK++L+ QF RE
Sbjct: 209  IQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGRE 268

Query: 1073 PTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEG 1252
            PTL+EWA+A GL+   L+ QL     SREKLINANLRMVVHIAK+YQ RGL LQDLLQEG
Sbjct: 269  PTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEG 328

Query: 1253 SMGLMKSVEKFNPEAGCRF 1309
            ++GLMKS+EKF P+AGCRF
Sbjct: 329  TVGLMKSIEKFKPQAGCRF 347


>gb|ESW16353.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  274 bits (700), Expect = 7e-71
 Identities = 179/390 (45%), Positives = 232/390 (59%), Gaps = 8/390 (2%)
 Frame = +2

Query: 164  MEVAGRNLLSSPPTFSQKTQLRNC-PSSISSSVLMLHEHAAPALMSVPHAYLARHVPASV 340
            ME A     SSPP F  +T   N  P+S S+SVLML E A+  + S    + A++ PASV
Sbjct: 10   MEFARTMFCSSPP-FPPRTHPWNTHPTSSSTSVLMLREQASSTVASWSSNFSAQNFPASV 68

Query: 341  INPDQQFENRLQLHPLKEDKTSLATIDRRLVEDASSELEENETVDSEQNINALQVQLLRW 520
            +  +Q+ E R  LH  KEDKTS A ++ R + D  +  EEN T +++Q +   +  L  W
Sbjct: 69   LLQEQRDEYRPLLHMSKEDKTSQAILNTRQM-DMDTVHEENNTGNADQIVLDFRKHLHLW 127

Query: 521  PGPSYSFPSYHLKEKGLLSLDTESLQTKGDKVKNFEPHNVVALGRKXXXXXXXXXXXXXD 700
            P       S    E    S   + +    ++  +    N V+L +K              
Sbjct: 128  PRLQNLLNSSQTGEIAASST-LQHVSVDSERRTDGVQCNGVSLAKKALSTAKQTSSVVEG 186

Query: 701  SKLLETHFDDSNFP-NFLSTNLADDKLKGQRTVRSTRLIERQSRKRGATKLTHQVQETNR 877
             K ++   DD + P    ST LAD  +   +TVRSTRL+ER++++R  +K   +  ET  
Sbjct: 187  LKSIKA--DDDSIPFGLASTGLADPSVGRNKTVRSTRLLERRAKQRKVSKSIVKDDETYL 244

Query: 878  SGRPDVRRRV------NEPIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQCSMKLQEV 1039
            + + D + R+      NE  D ND LRMFL GPETKQLLT+++ESELI KIQ  +KL+E+
Sbjct: 245  TRKDDAQERIRKEKKINEEFDQNDTLRMFLRGPETKQLLTLEQESELISKIQDLLKLEEL 304

Query: 1040 KHQLQMQFAREPTLIEWAEAAGLTSRELQSQLRYSKSSREKLINANLRMVVHIAKQYQGR 1219
            K +LQ QF REPT+ EWAE AGL  R L SQLR+   SREKLI ANLRMVVH+AK YQGR
Sbjct: 305  KTRLQSQFGREPTMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGR 364

Query: 1220 GLSLQDLLQEGSMGLMKSVEKFNPEAGCRF 1309
            GLSLQDLLQEGSMGLMKSVEKFNP AG RF
Sbjct: 365  GLSLQDLLQEGSMGLMKSVEKFNPLAGSRF 394