BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00006824
         (3594 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1660   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1658   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1642   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1620   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...  1325   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1316   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1313   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...  1302   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]      1300   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1298   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1292   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1289   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1283   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1280   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...  1278   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1276   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1262   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1247   0.0  
ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1237   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...  1234   0.0  

>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1660 bits (4298), Expect = 0.0
 Identities = 835/964 (86%), Positives = 858/964 (89%), Gaps = 8/964 (0%)
 Frame = +1

Query: 85   QWR-TQNPQNTHKFNHIHNQEFRKIPQSSSFPQTLKLPSIQMTITVHYEAVCVSTDXXXX 261
            QWR TQ  Q       IH+QEF K+ Q+SSFP+TLKLP IQ+ ITVH E VCVSTD    
Sbjct: 52   QWRKTQKSQKNCFLYGIHSQEFLKLSQTSSFPKTLKLPVIQLPITVHSEVVCVSTDENLT 111

Query: 262  XXXXXXXXXKKIPNGF-------TNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXX 420
                     +KIPNG+       +NKRVFIQDPPWVSSLFMNSLFVRAKQV+GV      
Sbjct: 112  ENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFRE 171

Query: 421  XXXXXXXXXXXXXQIKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLR 600
                         QIKAETEAW                KKLAPNLPYVKKLLLGWFEPLR
Sbjct: 172  IERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLR 231

Query: 601  QAIEKEQKAEMTQKHRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAV 780
            QAIEKEQ AEMTQKHR AYAPHIDSLPADKMAVIVMHK         KE+RCVQVVQAAV
Sbjct: 232  QAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 291

Query: 781  QIGMAVENEVRIHNFFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRK 960
            QIGMAVENEVRIHNF EKTKKHQKHM+GAQ QED+SRETMILR RVKSLIKRNRV EVRK
Sbjct: 292  QIGMAVENEVRIHNFMEKTKKHQKHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRK 351

Query: 961  LIKSEEPESWGKDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRD 1140
            L++SEEPESWG+DTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRH+FRIATRD
Sbjct: 352  LMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRD 411

Query: 1141 PGKSIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMR 1320
            PGK+IVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYL+LPSYLMR
Sbjct: 412  PGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMR 471

Query: 1321 THGSRRQQDAVRNVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDR 1500
            THGSRRQQDAVR+VP KQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDR
Sbjct: 472  THGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDR 531

Query: 1501 KDVPIPELHSDDIMEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPH 1680
            KDVPIPELHSDDIME             INQELHSQRCDTELKLSVARKLKDEEGFYYPH
Sbjct: 532  KDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPH 591

Query: 1681 NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCY 1860
            NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGL WLK+HLASLYAGGIEKLCY
Sbjct: 592  NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCY 651

Query: 1861 DARIAFVENHLDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHL 2040
            DARIAFVENH+DDILDSA+NPLNGNRWWLNAEDP QCLAACINLSEALKS SPHTVISHL
Sbjct: 652  DARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHL 711

Query: 2041 PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPAT 2220
            PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIR DSTKDPAT
Sbjct: 712  PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPAT 771

Query: 2221 DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC 2400
            DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC
Sbjct: 772  DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC 831

Query: 2401 YAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVI 2580
            YAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVI
Sbjct: 832  YAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVI 891

Query: 2581 RTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFW 2760
            RTSLQVLALQREGD VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFW
Sbjct: 892  RTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFW 951

Query: 2761 THACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESP 2940
            THACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDL+EVLESP
Sbjct: 952  THACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLQEVLESP 1011

Query: 2941 YFFN 2952
            YFFN
Sbjct: 1012 YFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 831/964 (86%), Positives = 859/964 (89%), Gaps = 8/964 (0%)
 Frame = +1

Query: 85   QWR-TQNPQNTHKFNHIHNQEFRKIPQSSSFPQTLKLPSIQMTITVHYEAVCVSTDXXXX 261
            QWR  Q  Q    F+ I+NQEF K+ Q+SSFP+TLKLP IQ+ ITVH E VCVSTD    
Sbjct: 44   QWRKAQKSQKNCTFHGIYNQEFLKLSQTSSFPKTLKLPIIQLPITVHSEVVCVSTDENLT 103

Query: 262  XXXXXXXXXKKIPNGF-------TNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXX 420
                     +KIPNG+       +NKRVFIQDPPWVSSLFMN+LFVRAKQV+GV      
Sbjct: 104  ENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFRE 163

Query: 421  XXXXXXXXXXXXXQIKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLR 600
                         QIKAETEAW                KKLAPNLPYVKKL+LGWFEPLR
Sbjct: 164  IERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLR 223

Query: 601  QAIEKEQKAEMTQKHRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAV 780
            QAIE+EQ AEMTQKHR AYAPHIDSLPADKMAVIVMHK         KE+RCVQVVQAAV
Sbjct: 224  QAIEREQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 283

Query: 781  QIGMAVENEVRIHNFFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRK 960
            QIGMAVENEVRIHNF EKTKKHQKHMTGAQ QED+SRETMILR RVKSLIKRNRV EVRK
Sbjct: 284  QIGMAVENEVRIHNFMEKTKKHQKHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRK 343

Query: 961  LIKSEEPESWGKDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRD 1140
            L++SEEPESWG+DTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRH+FRIATRD
Sbjct: 344  LMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRD 403

Query: 1141 PGKSIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMR 1320
            PGK+IVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYL+LPSYLMR
Sbjct: 404  PGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMR 463

Query: 1321 THGSRRQQDAVRNVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDR 1500
            THGSRRQQDAVR+VP KQMQQVYEALDTLGSTKWRVNKRILSVVE+IWAGGGNIAGLVDR
Sbjct: 464  THGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDR 523

Query: 1501 KDVPIPELHSDDIMEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPH 1680
            KDVPIPELHSDDIME             INQELHSQRCDTELKLSVARKL+DEEGFYYPH
Sbjct: 524  KDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLRDEEGFYYPH 583

Query: 1681 NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCY 1860
            NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGL WLK+HLASLYAGGIEKLCY
Sbjct: 584  NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCY 643

Query: 1861 DARIAFVENHLDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHL 2040
            DARIAFVENH+DDILDSA+NPLNGNRWWLNAEDP QCLAACINLSEA+KS SPHTVISHL
Sbjct: 644  DARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHL 703

Query: 2041 PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPAT 2220
            PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIR DSTKDPAT
Sbjct: 704  PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPAT 763

Query: 2221 DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC 2400
            DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC
Sbjct: 764  DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC 823

Query: 2401 YAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVI 2580
            YAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVI
Sbjct: 824  YAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVI 883

Query: 2581 RTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFW 2760
            RTSLQVLALQREGD VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFW
Sbjct: 884  RTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFW 943

Query: 2761 THACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESP 2940
            THACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESP
Sbjct: 944  THACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESP 1003

Query: 2941 YFFN 2952
            YFFN
Sbjct: 1004 YFFN 1007


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1642 bits (4251), Expect = 0.0
 Identities = 836/968 (86%), Positives = 854/968 (88%), Gaps = 12/968 (1%)
 Frame = +1

Query: 85   QWRTQNPQNTHKFNHIHNQEFRKIPQSSS-----FPQTLKLPSIQMTITVHYEA---VCV 240
            QWRTQ       F  IHNQEF K+ QSSS     FP+TLKLP IQM I  + ++   VCV
Sbjct: 14   QWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPKTLKLPVIQMPINNNIQSQTTVCV 73

Query: 241  STDXXXXXXXXXXXXXKKIPNGF----TNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXX 408
            STD             +KI NG     +NKRVFIQDPPWVSSLFMNSLFVRAKQVQGV  
Sbjct: 74   STDENLEELVNL----QKIANGVLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRR 129

Query: 409  XXXXXXXXXXXXXXXXXQIKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWF 588
                             QIKAETEAW                KKLAPNLPYVKKLLLGWF
Sbjct: 130  EFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWF 189

Query: 589  EPLRQAIEKEQKAEMTQKHRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVV 768
            EPLRQAIEKEQ AE T KHRAA+APHIDSLPADKMAVIVMHK         KE+RCVQVV
Sbjct: 190  EPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVV 249

Query: 769  QAAVQIGMAVENEVRIHNFFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVF 948
            QAAVQIGMAVENEVRIHNF EKTKK QKHMTGAQSQED+SRETMILR RVKSLIKRNRV 
Sbjct: 250  QAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVV 309

Query: 949  EVRKLIKSEEPESWGKDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRI 1128
            EVRKL+KSEEPESWG+DTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRH+FRI
Sbjct: 310  EVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRI 369

Query: 1129 ATRDPGKSIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPS 1308
            ATRDPGKSIVKKYGVIECDPLVV GVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYL+LPS
Sbjct: 370  ATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 429

Query: 1309 YLMRTHGSRRQQDAVRNVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAG 1488
            YLMRTHGSRRQQDAVR+VPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAG
Sbjct: 430  YLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAG 489

Query: 1489 LVDRKDVPIPELHSDDIMEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGF 1668
            LVDRKDVPIPELHSDDIME             INQELHSQRCDTELKLSVARKLKDEEGF
Sbjct: 490  LVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGF 549

Query: 1669 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIE 1848
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGL WLKIHLASLYAGGIE
Sbjct: 550  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIE 609

Query: 1849 KLCYDARIAFVENHLDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV 2028
            KLCYDAR+AFVENH+DDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV
Sbjct: 610  KLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV 669

Query: 2029 ISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTK 2208
             SHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAG+KPADVYTEIALRVDHIIR DS K
Sbjct: 670  FSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIK 729

Query: 2209 DPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF 2388
            DPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF
Sbjct: 730  DPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF 789

Query: 2389 TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQ 2568
            TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQ
Sbjct: 790  TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQ 849

Query: 2569 RHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH 2748
            RHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH
Sbjct: 850  RHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH 909

Query: 2749 DSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREV 2928
            DSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQ SYPALTFPPLPKRGDFDL EV
Sbjct: 910  DSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEV 969

Query: 2929 LESPYFFN 2952
            LESPYFFN
Sbjct: 970  LESPYFFN 977


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1620 bits (4195), Expect = 0.0
 Identities = 825/968 (85%), Positives = 849/968 (87%), Gaps = 12/968 (1%)
 Frame = +1

Query: 85   QWRTQNPQNTHKFNHIHNQEFRKIPQSSS-----FPQTLKLPSIQMTIT--VHYEAVCVS 243
            QWRTQ       F  IHNQEF K+ QSSS     FP+TLKLP I M I        VCVS
Sbjct: 14   QWRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSSFPKTLKLPVIHMPINNIQSQTTVCVS 73

Query: 244  TDXXXXXXXXXXXXXKKIPNGF----TNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXX 411
            TD             +KIPNGF    +NKRVFIQDPPWVSSLFMNSLFVRAKQVQGV   
Sbjct: 74   TDENLEELVNL----QKIPNGFLNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRRE 129

Query: 412  XXXXXXXXXXXXXXXXQIKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFE 591
                            QIKAETEAW                KKLAPNLPYVKKLLLGWFE
Sbjct: 130  FREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFE 189

Query: 592  PLRQAIEKEQKAEMTQKHRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQ 771
            PLRQAIEKEQ AE T KHRAA+APHIDSLPADKMAVIVMHK         KE+RCVQVVQ
Sbjct: 190  PLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQ 249

Query: 772  AAVQIGMAVENEVRIHNFFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFE 951
            AAVQIGMAVENEVRIHNF EKTKK QKHMTGAQSQED+S+ETMILR RVKSLIKRNRV E
Sbjct: 250  AAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVE 309

Query: 952  VRKLIKSEEPESWGKDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIA 1131
            VRKL+KSEEPESWG+DTQAKLGCRLLELLTETAYVQ PVDQSADTPPDIRPAFRH+F+IA
Sbjct: 310  VRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIA 369

Query: 1132 TRDPGKSIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSY 1311
            TRDPGK+IVKKYGVIECDPLVV GVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYL+LPSY
Sbjct: 370  TRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSY 429

Query: 1312 LMRTHGSRRQQDAVRNVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGL 1491
            LMRTHGSRRQQDAVR VPTKQMQQVYEALDTLGSTKWRVNKRIL+VVESIWAGGGNIAGL
Sbjct: 430  LMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGL 489

Query: 1492 VDRKDVPIPEL-HSDDIMEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGF 1668
            VDRKDVPIPEL +SDDIME             INQELHSQRCDTELKLSVARKLKDEEGF
Sbjct: 490  VDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGF 549

Query: 1669 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIE 1848
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGL WLKIHLASLYAGG+E
Sbjct: 550  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVE 609

Query: 1849 KLCYDARIAFVENHLDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV 2028
            KLCYDAR+AFVENH+ DILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV
Sbjct: 610  KLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV 669

Query: 2029 ISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTK 2208
            ISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIR DS K
Sbjct: 670  ISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIK 729

Query: 2209 DPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF 2388
            DPA DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF
Sbjct: 730  DPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF 789

Query: 2389 TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQ 2568
            TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIA ENQPVRWTTPLGLPVVQPYFKTQ
Sbjct: 790  TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQ 849

Query: 2569 RHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH 2748
            RHVIRTSLQ+LALQREGD VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH
Sbjct: 850  RHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH 909

Query: 2749 DSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREV 2928
            DSFWTHACDVDQMNRILREKFVELYS+PILEDLLE+FQ+SYPALTFPPLPKRGDF+LREV
Sbjct: 910  DSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREV 969

Query: 2929 LESPYFFN 2952
            LESPYFFN
Sbjct: 970  LESPYFFN 977


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1325 bits (3429), Expect = 0.0
 Identities = 662/955 (69%), Positives = 759/955 (79%), Gaps = 5/955 (0%)
 Frame = +1

Query: 103  PQNTHKF--NHIHNQEFRKIPQSSS--FPQTLKLPSIQMTITVHYEAVCVSTDXXXXXXX 270
            P+  HKF  +   N  F K   SSS  FP  LK P   + I    +++  +         
Sbjct: 26   PKLNHKFLFSSTSNSLFFKPSHSSSTHFPLNLKPPPEPVHIPPLRDSIQDNIVENSMNFQ 85

Query: 271  XXXXXXKKIPNGFTNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXX 450
                    I    +  R+FIQDPPW++SLF+  ++ RA Q   +                
Sbjct: 86   IPMSEFHLITPQESAPRIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRR 145

Query: 451  XXXQIKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAE 630
               QIKAETEAW                KKLAPNLPYVK L LGWFEPLR+AI +EQK +
Sbjct: 146  ---QIKAETEAWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQ 202

Query: 631  MTQKHRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEV 810
             T+KH+AA+APHID LPADKMA+IVMHK          +D CVQVVQAAV IGMA+E EV
Sbjct: 203  QTKKHKAAFAPHIDLLPADKMALIVMHKMMGLVMVG-NQDGCVQVVQAAVHIGMAIEQEV 261

Query: 811  RIHNFFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESW 990
            RIH+F EKTK  QK  TG   ++ +S+E  ILR RV  LI+R R+ EV+KL+  EE + W
Sbjct: 262  RIHSFLEKTKNLQKKKTGVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPW 321

Query: 991  GKDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYG 1170
            G+D QAKLG RL+ELLTETAYVQPP+ Q AD+PPD+RPAFRH F+   + PG+ IVK YG
Sbjct: 322  GRDKQAKLGSRLIELLTETAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYG 381

Query: 1171 VIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDA 1350
            VIECDPLV+ G+D+T K M+IPYVPMLVPPK+W+GYDKGG+L+LPSY+MRTHGSR+Q DA
Sbjct: 382  VIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDA 441

Query: 1351 VRNVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH- 1527
            +RN+   QMQ+V+EALD LGSTKWRVNK++LSVVESIWA GGNIAGLV+R+DVP+P+   
Sbjct: 442  MRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSP 501

Query: 1528 SDDIMEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAY 1707
            S+D+ E             INQE HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAY
Sbjct: 502  SEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAY 561

Query: 1708 PMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVEN 1887
            PMHPHLNHLSSDLCRG+LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL Y+ R+AFV+N
Sbjct: 562  PMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDN 621

Query: 1888 HLDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCN 2067
            H+DDI DSA NP+NGNRWWL AEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCN
Sbjct: 622  HIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCN 681

Query: 2068 GLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKL 2247
            GLQHYAALGRDS+EAAAVNLV G+KPADVY+EIA RV  I++ DS KDP T PNALLA++
Sbjct: 682  GLQHYAALGRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARI 741

Query: 2248 LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAA 2427
            L++Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLFTA+CYAAKVTLAA
Sbjct: 742  LVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAA 801

Query: 2428 LGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLAL 2607
            LGE+FQAARG M+WLGDCAKVIASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLAL
Sbjct: 802  LGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLAL 861

Query: 2608 QREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQM 2787
            QRE ++V++RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTH CDVDQM
Sbjct: 862  QRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQM 921

Query: 2788 NRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            N ILREKFVELYSMPILE LLESFQ SYPALTFPPLP+RGDFDL +VLESPYFFN
Sbjct: 922  NEILREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1316 bits (3406), Expect = 0.0
 Identities = 642/879 (73%), Positives = 737/879 (83%), Gaps = 1/879 (0%)
 Frame = +1

Query: 319  RVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXXX 498
            R+F+QDPPW+SS   +    R ++                       Q+KAETEAW    
Sbjct: 103  RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMV 162

Query: 499  XXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDSL 678
                        KKLAPNLPYVK L LGWFEPLR+AI+KEQ+A+ T+K +AAYAPHI+ L
Sbjct: 163  EEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELL 222

Query: 679  PADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKHM 858
            PADKMAVIVMHK         +E  CV+VVQAAVQIGMA+E EVRIH+F EKTK  ++H 
Sbjct: 223  PADKMAVIVMHKMMGLVMMGHEEG-CVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHK 281

Query: 859  TGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLELL 1038
            T   SQE + RE  ILR RVKS I++ ++ EV+KL+K+EE   WG+DTQAKLG RL+ELL
Sbjct: 282  TVGHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELL 340

Query: 1039 TETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRTV 1218
            TETAYVQ PV+QSAD PPD+RPAFRH F+  T++ G+   +KYGVIECDPLV++G+DRT 
Sbjct: 341  TETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTA 400

Query: 1219 KQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEAL 1398
            K M+IPYVPML+PPKKW+GYDKGGYL+LPSY+MRTHGSR+QQDAV++VP +Q+Q+V+EAL
Sbjct: 401  KHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEAL 460

Query: 1399 DTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHS-DDIMEXXXXXXXXXX 1575
            DTLG+TKWR+N+R+LSVVESIWA GGN+ GLVDR++VP+PE  S +D+ E          
Sbjct: 461  DTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARK 520

Query: 1576 XXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1755
               INQE HS RCDTE+KLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 521  AKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 580

Query: 1756 ILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNGN 1935
            +LEFAEGRPLGKSGL WLKI LA+LYAGG+EKL YD R+AFV+NHLDD+ DSA+NPLNGN
Sbjct: 581  VLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGN 640

Query: 1936 RWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAA 2115
            RWWL AEDPFQCLAACINLSEAL+SSSPHTVISHLPIHQDGSCNGLQHYAALGR+S+EA+
Sbjct: 641  RWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEAS 700

Query: 2116 AVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMT 2295
            AVNLVAGEKPADVY+EIA RV  I++ DS KDPATDP ALLAK+LI QVDRKLVKQTVMT
Sbjct: 701  AVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMT 760

Query: 2296 SVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLG 2475
            SVYGVTY+GAREQIKRRL EKGLI D+RLLFTA+CYAAKVTLAALGE+FQAAR  M WLG
Sbjct: 761  SVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLG 820

Query: 2476 DCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAF 2655
            +CAKVIASENQPV+WTTPLGLPV+QPY K++RH+IRTSLQVLALQREG  V +RKQRTAF
Sbjct: 821  ECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAF 880

Query: 2656 PPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPI 2835
            PPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILREKFVELYSMPI
Sbjct: 881  PPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPI 940

Query: 2836 LEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            LE+LLESFQ S+P LTFPPLP RG+FDLREVLESPYFFN
Sbjct: 941  LENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1313 bits (3399), Expect = 0.0
 Identities = 637/879 (72%), Positives = 736/879 (83%), Gaps = 1/879 (0%)
 Frame = +1

Query: 319  RVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXXX 498
            R+FIQDPPW++SLF+  +F   K+V                      QIKAETEAW    
Sbjct: 99   RIFIQDPPWIASLFLKGMF---KKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMV 155

Query: 499  XXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDSL 678
                        KKLAP+LPYVK L LGWFEPLR+AI KEQKA+ T+KH+ A+APHID L
Sbjct: 156  EDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLL 215

Query: 679  PADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKHM 858
            PADKMA+IVMHK          +D CVQVVQAAV IGMA+E EVRIH+F EK+K  Q+  
Sbjct: 216  PADKMALIVMHKLMGLVMMG-NQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKK 274

Query: 859  TGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLELL 1038
            T    ++ +S+E  ILR RV  LI+R R+ EV+KL+K E+ + WG+DTQAKLG RL+ELL
Sbjct: 275  TSVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELL 334

Query: 1039 TETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRTV 1218
            TETA+VQPP+DQ AD PPD+RPAFRH  + A + PG+ +VK YGVIECDPLV+ G+D+T 
Sbjct: 335  TETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTA 394

Query: 1219 KQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEAL 1398
            K M+IPYVPMLVPPK+W+GYDKGG+L+LPSY+MRTHGSR+Q D +RN+  +QMQ+V+EAL
Sbjct: 395  KHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEAL 454

Query: 1399 DTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEXXXXXXXXXX 1575
            D LGSTKWR+NK++L+VVESIWA GGNIAGLVDR+DVP+PE   S+D  E          
Sbjct: 455  DMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARK 514

Query: 1576 XXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1755
               +NQE HSQRCDTELKLSVAR++KDE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 515  AKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 574

Query: 1756 ILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNGN 1935
            +LEFAEGRPLGKSGL WLKIHLA+LY+GG+EKL YD RI+FV+NH+DDI DSA NP+NGN
Sbjct: 575  VLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGN 634

Query: 1936 RWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAA 2115
            RWWL AEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCNGLQHYAALGRD++EAA
Sbjct: 635  RWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAA 694

Query: 2116 AVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMT 2295
            AVNLVAGEKPADVY+EIA+RV  I++ DS KDP T+PNALLAK+L++Q+DRKLVKQTVMT
Sbjct: 695  AVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMT 754

Query: 2296 SVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLG 2475
            SVYGVTYVGAREQIKRRLEEKGLI DDRLLFTA+CYAAKVTLAALGE+FQAARG M+WLG
Sbjct: 755  SVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLG 814

Query: 2476 DCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAF 2655
            DCAKVIASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLALQRE + V+VRKQRTAF
Sbjct: 815  DCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAF 874

Query: 2656 PPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPI 2835
            PPNFVHSLDGSHMMMTA+ACRDAG++FAGVHDSFWTHACDVDQMN+ILRE FVELYS PI
Sbjct: 875  PPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPI 934

Query: 2836 LEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            LE+LLESFQ +YP LTFPPLP+RGDFDL+EVL+SPYFFN
Sbjct: 935  LENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1302 bits (3370), Expect = 0.0
 Identities = 639/881 (72%), Positives = 741/881 (84%), Gaps = 3/881 (0%)
 Frame = +1

Query: 319  RVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXXX 498
            R+FIQDPPW+S+LF+  L+    Q   +                   Q+K ETEAW    
Sbjct: 103  RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRR---QVKEETEAWEKMV 159

Query: 499  XXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEM--TQKHRAAYAPHID 672
                        KKLAPNLPYVK L LGWFEP+R+AI +EQK +   ++K RAAYAPHI+
Sbjct: 160  EEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIE 219

Query: 673  SLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQK 852
             LPADKMAVIVMHK         +E+  VQVVQAAV IG+A+E EVRIHNF EKTK +Q+
Sbjct: 220  LLPADKMAVIVMHKMMGLVMGA-QENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQR 278

Query: 853  HMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLE 1032
              T  + Q  +S+E  IL+ RV SLI+R R+ EV+KL+K+EE + WG+D QAKLG RLLE
Sbjct: 279  KKTTDEVQ-GLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLE 337

Query: 1033 LLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDR 1212
            LLTETAYVQPP+DQS D+PPD++PAFRH F+  ++DPGK ++K+YGVIECDPL++ G+DR
Sbjct: 338  LLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDR 397

Query: 1213 TVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYE 1392
            + K M+IPYVPMLVPPKKW+GYDKGGYL+LPSY+MRTHGSR+QQDA++ V  K+MQ+V+E
Sbjct: 398  SAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFE 457

Query: 1393 ALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEXXXXXXXX 1569
            ALDTLGSTKWRVNK++L+VVESIWA GGNIAGLVDR D+PIPE   S+D  E        
Sbjct: 458  ALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSV 517

Query: 1570 XXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 1749
                 IN+E HSQRCDTELKLSVARK+++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC
Sbjct: 518  RKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 577

Query: 1750 RGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLN 1929
            RG+LEFAEGRPLG+SGL WLKIHLA+L+AGG+EKL +D R+AFV+NHLDDI DSA NP+N
Sbjct: 578  RGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPIN 637

Query: 1930 GNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSME 2109
            GNRWWL AEDPFQCLAACINLSE+LKSSSPH+V+S+LPIHQDGSCNGLQHYAALGRDS+E
Sbjct: 638  GNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLE 697

Query: 2110 AAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTV 2289
            AAAVNLVAGEKPADVY+EIA+RV +I++ DS KDPAT+PNA LAKLLIDQVDRKLVKQTV
Sbjct: 698  AAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTV 757

Query: 2290 MTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTW 2469
            MTSVYGVT+VGAREQIKRRLEEKG I DDR+LF A+CY AKVTLAALGELFQAAR  M W
Sbjct: 758  MTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGW 817

Query: 2470 LGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRT 2649
            LGDCAKVIASENQPV+WTTPLGLPVVQPY+K++RH+IRTSLQVLALQREGD+VEVRKQRT
Sbjct: 818  LGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRT 877

Query: 2650 AFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSM 2829
            AFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDV++MN+ILREKFVELYSM
Sbjct: 878  AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSM 937

Query: 2830 PILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            P+LE+L ES Q SYP+L FPPLP+RG+FDLREVL+SPYFFN
Sbjct: 938  PVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score = 1300 bits (3365), Expect = 0.0
 Identities = 640/939 (68%), Positives = 749/939 (79%), Gaps = 9/939 (0%)
 Frame = +1

Query: 163  SSSFPQTLKLPSIQMTITVHYEAVCVSTDXXXXXXXXXXXXXKKIPNG---------FTN 315
            SSSFP+ +KLPS+          V  S+D                PNG           +
Sbjct: 16   SSSFPRNVKLPSLHTPAPFLSHPVSDSSDDNFTENPGNLATMLVTPNGGISSEFSKELRD 75

Query: 316  KRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXX 495
            + V IQDPPW+SSL++ SL  R +    V                   QIKAETEAW   
Sbjct: 76   RVVIIQDPPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYELRRR-QIKAETEAWENM 134

Query: 496  XXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDS 675
                         KK+APNLPY KKL+LGWFEPL +AI  EQ  +  +K+R A+AP+IDS
Sbjct: 135  VKEYKELEKEMCEKKMAPNLPYFKKLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDS 194

Query: 676  LPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKH 855
            LP + MAVIVMHK         K+DRC++VV+AA+QIG A+E EVRIH F EKTK HQK 
Sbjct: 195  LPPESMAVIVMHKIMGLLMMGGKQDRCIRVVEAALQIGKAIEQEVRIHAFLEKTK-HQKE 253

Query: 856  MTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLEL 1035
               ++SQE+   +   LR RVK+L++R R  EV+KL+KSE  E W ++ QAKLGC L+ L
Sbjct: 254  AVASESQENSCEKAANLRKRVKNLVRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINL 313

Query: 1036 LTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRT 1215
            LT++AYVQPPV QSAD+PPD+RPAFRH F+IATR+P +++V++YGVIECDPL++ G +  
Sbjct: 314  LTQSAYVQPPVSQSADSPPDVRPAFRHFFKIATREPRQTVVRRYGVIECDPLILDGFESN 373

Query: 1216 VKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEA 1395
            VK MM+P++PML+PPKKW+GYDKGGYL+LPSY+MRTHGSRRQQDAV+ V  ++MQ+V+EA
Sbjct: 374  VKHMMVPHIPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEA 433

Query: 1396 LDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEXXXXXXXXXX 1575
            LDTLG+TKWRVNK ILSVVE IWA GGNIAGLV+R+DVP+PELHSDD +E          
Sbjct: 434  LDTLGNTKWRVNKSILSVVEDIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRK 493

Query: 1576 XXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1755
                N E+HS RCDTELKLSVAR +KDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 494  AKKNNMEMHSLRCDTELKLSVARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRG 553

Query: 1756 ILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNGN 1935
            ILEF+EGRPLGKSGL WLK+HLA+L+ GG++KL YD R++FVEN++ ++ DSA+NPL+GN
Sbjct: 554  ILEFSEGRPLGKSGLYWLKLHLANLFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGN 613

Query: 1936 RWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAA 2115
            RWWL AEDPFQ LAACIN+SEAL+SSSPHTVISHLPIHQDGSCNGLQHYAALGRDS EAA
Sbjct: 614  RWWLKAEDPFQFLAACINISEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAA 673

Query: 2116 AVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMT 2295
            AVNLVAG KP DVY+EIA RV  I++ DS KDPA DPNA+LAKLLI QVDRKLVKQTVMT
Sbjct: 674  AVNLVAGHKPTDVYSEIAERVLDIMKSDSEKDPADDPNAVLAKLLIGQVDRKLVKQTVMT 733

Query: 2296 SVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLG 2475
            SVYGVTYVGAREQI++RL EKG I+DD++LF A+CYAAKVT+AALG+LFQAAR  M+WLG
Sbjct: 734  SVYGVTYVGAREQIRKRLAEKGFINDDKVLFMAACYAAKVTMAALGQLFQAARAIMSWLG 793

Query: 2476 DCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAF 2655
            DCAK+IASENQPVRWTTPLGLPVVQPYFKT+RHVIRTSLQVLALQREGD+VEVRKQ+TAF
Sbjct: 794  DCAKIIASENQPVRWTTPLGLPVVQPYFKTKRHVIRTSLQVLALQREGDSVEVRKQKTAF 853

Query: 2656 PPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPI 2835
            PPNFVHSLDGSHMMMTAVACRDAGL+FAGVHDSFWTHACDVD+MN+ILREKFV+LYSMPI
Sbjct: 854  PPNFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDKMNQILREKFVDLYSMPI 913

Query: 2836 LEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            LEDLLESFQ SYP L FPPLPKRGDFDLR VL+SPYFFN
Sbjct: 914  LEDLLESFQSSYPTLRFPPLPKRGDFDLRNVLDSPYFFN 952


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1298 bits (3358), Expect = 0.0
 Identities = 636/885 (71%), Positives = 734/885 (82%), Gaps = 1/885 (0%)
 Frame = +1

Query: 301  NGFTNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETE 480
            +G ++K+VFIQDPPW+S+ F   ++  A +   V                   QI+ ETE
Sbjct: 2    HGESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRR---QIREETE 58

Query: 481  AWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYA 660
            AW                +KLAPNLPYVK LLLGWFEPL++AIEKEQK E ++K ++A++
Sbjct: 59   AWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFS 118

Query: 661  PHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTK 840
            P+I+ LPADKMAVIVMHK          ED CV+VVQAAVQIGMA+E EVRIHNF EKTK
Sbjct: 119  PNIELLPADKMAVIVMHKMMGLLMVGH-EDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTK 177

Query: 841  KHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGC 1020
             +Q+  T  + QE + +E  +LR RV SLI+R R+ EV+ L+K +E + W + TQAKLG 
Sbjct: 178  NYQRKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGS 237

Query: 1021 RLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVV 1200
            RL+ELLTETAYVQPPV+QS D PPD+RPAFRHIF+  T++PG+ IVKKYGVIECDPL++ 
Sbjct: 238  RLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILT 297

Query: 1201 GVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQ 1380
            G+D T K M+IPY PMLVPPKKW+GYDKGG+L+LPSY+MRTHGSR+QQ AVR+VP KQMQ
Sbjct: 298  GLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQ 357

Query: 1381 QVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEXXXX 1557
            +V+EALDTLG+TKWRVN+R+L VVE IW  GGNIAGLVDR+D+PIPE   SDD+ E    
Sbjct: 358  KVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKW 417

Query: 1558 XXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 1737
                     INQE HSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHL HLS
Sbjct: 418  KWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLS 477

Query: 1738 SDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSAN 1917
            SDLCRG+LEF EGRPLGKSGL WLKIHLA+LY+GG+EKL +D R+AFVENHL +I DSA 
Sbjct: 478  SDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAK 537

Query: 1918 NPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGR 2097
            NP+NG RWWL AEDPFQCLAACINLSEAL S+SPHTVISHLPIHQDGSCNGLQHYAALGR
Sbjct: 538  NPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGR 597

Query: 2098 DSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLV 2277
            D++EAAAVNLVA EKP+DVY+EIA+RV  IIR DS KDPAT+P+ALLAK+L+DQVDRKLV
Sbjct: 598  DTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLV 657

Query: 2278 KQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARG 2457
            KQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+A+CY AKVTL ALGELFQAAR 
Sbjct: 658  KQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARD 717

Query: 2458 TMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVR 2637
             M+WLGDCAK+IASE+QPV+WTTPLGLPVVQPY+KT+RH+I+TSLQ+LALQREG +V+VR
Sbjct: 718  IMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVR 777

Query: 2638 KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVE 2817
            KQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DVD MNRILREKFVE
Sbjct: 778  KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVE 837

Query: 2818 LYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            LY+MPILE+LLE FQ SYP L FPPLP+RG+FDL++VL SPYFFN
Sbjct: 838  LYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1292 bits (3344), Expect = 0.0
 Identities = 640/889 (71%), Positives = 730/889 (82%), Gaps = 2/889 (0%)
 Frame = +1

Query: 292  KIPNGFTNKRVFIQDPPWVSSLFMNSLF-VRAKQVQGVXXXXXXXXXXXXXXXXXXXQIK 468
            +I +G ++KRVFI+D PW+S+L+      +  K+V+                     QI+
Sbjct: 99   QIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVK----LELKDIEKRKYNLLRRRQIR 154

Query: 469  AETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHR 648
             ETEAW                +KLAPNLPYVK L LGWFEPL++AIE+EQK E ++K +
Sbjct: 155  EETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQK 214

Query: 649  AAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFF 828
            +A++P+I+ LPADKMAVIVMHK          ED CV+VVQAAVQIG+A+E EVRIHNF 
Sbjct: 215  SAFSPNIELLPADKMAVIVMHKMMGLVMVGH-EDGCVRVVQAAVQIGIAIEQEVRIHNFL 273

Query: 829  EKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQA 1008
            EKTK HQ+  T    QE + +E  +LR RV SLI+R R+ EV+ L+  +E + W +D QA
Sbjct: 274  EKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQA 333

Query: 1009 KLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDP 1188
            KLG RL+ELLTETAYVQPPVDQS   PPD+RPAFRHIF+  T++PG+  VKKYGVIECDP
Sbjct: 334  KLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDP 393

Query: 1189 LVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPT 1368
            L++ G+D T K M+IPY PMLVPPKKWRGYDKGG+L+LPSY+MRTHGSR+QQDAVR+VP 
Sbjct: 394  LILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPG 453

Query: 1369 KQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPE-LHSDDIME 1545
            KQMQ+V+EALDTLG+TKWRVN ++L VVE IWA GGN AGLV+R D+PIPE L SDD+ E
Sbjct: 454  KQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTE 513

Query: 1546 XXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHL 1725
                         INQE HSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHL
Sbjct: 514  IQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHL 573

Query: 1726 NHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDIL 1905
             HLSSDLCRG+LEFAEGRPLGKSGLCWLKIHLA+LY+GG+EKL +D R+AFVENHL +I 
Sbjct: 574  THLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIF 633

Query: 1906 DSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYA 2085
            DSA NP+NG RWWL AEDPFQCLAACINLSEALKS+SPHTVISHLPIHQDGSCNGLQHYA
Sbjct: 634  DSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYA 693

Query: 2086 ALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVD 2265
            ALGRDS EAAAVNLVA EKP+DVY+EIA RV  IIR DS KDPAT+P+ALLAK+LID+VD
Sbjct: 694  ALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVD 753

Query: 2266 RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQ 2445
            RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDR+LF+A+CYAAKVTL ALGELFQ
Sbjct: 754  RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQ 813

Query: 2446 AARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDT 2625
            AAR  M WLGDCAKVIASE+QPVRWTTPLGLPVVQPY+KTQRH+IRTSLQVLALQREG +
Sbjct: 814  AARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSS 873

Query: 2626 VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILRE 2805
            V+VRKQRTAFPPNFVHSLDGSHMMMTAVACRDA L+FAGVHDSFWTHA D D MNRILRE
Sbjct: 874  VQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILRE 933

Query: 2806 KFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            KFVELY+MPILE+LLE FQ SYP L FP LP+RG+FDL+EVL SPYFFN
Sbjct: 934  KFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1289 bits (3336), Expect = 0.0
 Identities = 624/807 (77%), Positives = 712/807 (88%), Gaps = 1/807 (0%)
 Frame = +1

Query: 535  KKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDSLPADKMAVIVMHK 714
            KKLAPNLPYVK L LGWFEPLR+AI+KEQ+A+ T+K +AAYAPHI+ LPADKMAVIVMHK
Sbjct: 4    KKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHK 63

Query: 715  XXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKHMTGAQSQEDISRE 894
                     +E  CV+VVQAAVQIGMA+E EVRIH+F EKTK  ++H T   SQE + RE
Sbjct: 64   MMGLVMMGHEEG-CVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-RE 121

Query: 895  TMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLELLTETAYVQPPVDQ 1074
              ILR RVKS I++ ++ EV+KL+K+EE   WG+DTQAKLG RL+ELLTETAYVQ PV+Q
Sbjct: 122  KEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQ 181

Query: 1075 SADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLV 1254
            SAD PPD+RPAFRH F+  T++ G+   +KYGVIECDPLV++G+DRT K M+IPYVPML+
Sbjct: 182  SADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLI 241

Query: 1255 PPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEALDTLGSTKWRVNK 1434
            PPKKW+GYDKGGYL+LPSY+MRTHGSR+QQDAV++VP +Q+Q+V+EALDTLG+TKWR+N+
Sbjct: 242  PPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINR 301

Query: 1435 RILSVVESIWAGGGNIAGLVDRKDVPIPELHS-DDIMEXXXXXXXXXXXXXINQELHSQR 1611
            R+LSVVESIWA GGN+ GLVDR++VP+PE  S +D+ E             INQE HS R
Sbjct: 302  RVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLR 361

Query: 1612 CDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGK 1791
            CDTE+KLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGK
Sbjct: 362  CDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 421

Query: 1792 SGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNGNRWWLNAEDPFQC 1971
            SGL WLKI LA+LYAGG+EKL YD R+AFV+NHLDD+ DSA+NPLNGNRWWL AEDPFQC
Sbjct: 422  SGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQC 481

Query: 1972 LAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPAD 2151
            LAACINLSEAL+SSSPHTVISHLPIHQDGSCNGLQHYAALGR+S+EA+AVNLVAGEKPAD
Sbjct: 482  LAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPAD 541

Query: 2152 VYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGARE 2331
            VY+EIA RV  I++ DS KDPATDP ALLAK+LI QVDRKLVKQTVMTSVYGVTY+GARE
Sbjct: 542  VYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGARE 601

Query: 2332 QIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQP 2511
            QIKRRL EKGLI D+RLLFTA+CYAAKVTLAALGE+FQAAR  M WLG+CAKVIASENQP
Sbjct: 602  QIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQP 661

Query: 2512 VRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSH 2691
            V+WTTPLGLPV+QPY K++RH+IRTSLQVLALQREG  V +RKQRTAFPPNFVHSLDGSH
Sbjct: 662  VQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSH 721

Query: 2692 MMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESY 2871
            MMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILREKFVELYSMPILE+LLESFQ S+
Sbjct: 722  MMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSH 781

Query: 2872 PALTFPPLPKRGDFDLREVLESPYFFN 2952
            P LTFPPLP RG+FDLREVLESPYFFN
Sbjct: 782  PTLTFPPLPDRGNFDLREVLESPYFFN 808


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1283 bits (3320), Expect = 0.0
 Identities = 628/887 (70%), Positives = 734/887 (82%)
 Frame = +1

Query: 292  KIPNGFTNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKA 471
            +I  G ++KR+FIQDPPW++SLF+  L+   K VQ                     QIKA
Sbjct: 94   QITRGESSKRIFIQDPPWIASLFLKGLY---KCVQKEVKLEFMEIEKRKYNLLRRRQIKA 150

Query: 472  ETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRA 651
            ETEAW                KKLAPNLPYVKKL LGWFEPL+ AIE+EQK + ++K +A
Sbjct: 151  ETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKA 210

Query: 652  AYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFE 831
            A+APHI+ L ADKMAVIVM+K          +D CVQVVQAAVQIG A+E EVRI +  E
Sbjct: 211  AFAPHIELLSADKMAVIVMYKMMGLLMMAA-QDGCVQVVQAAVQIGGAIEQEVRIQSILE 269

Query: 832  KTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAK 1011
            K + +Q+    A + E +++E  +LR +V  LI+R ++ EV+KL+K EE ++WG+DTQAK
Sbjct: 270  KARSNQRTKVRADT-ECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAK 328

Query: 1012 LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPL 1191
            LG RL+ELL E+A++QPPV QSAD+PPDIRPAF H F+   + PG++ VKKYGV+ECDP+
Sbjct: 329  LGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPI 388

Query: 1192 VVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTK 1371
            V+ G+DRT K M+IPY+PMLVPPKKW+GYDKGG+ +LPSY+MRTHGS RQQDA++N+  K
Sbjct: 389  VLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGK 448

Query: 1372 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEXX 1551
            QMQ+V+EALD LGSTKWRVN+ +LSVVES+WA GGN AGLVDRKDVPIPE    D+ E  
Sbjct: 449  QMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQ 508

Query: 1552 XXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNH 1731
                       INQELHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 509  EWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 568

Query: 1732 LSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDS 1911
            LSSDLCRG+LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL YD R+AFV++HLD+I DS
Sbjct: 569  LSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDS 628

Query: 1912 ANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAAL 2091
            A+NP+NG+RWWL AEDPFQCLAAC+NLSEALKSS+PHTVIS+LPIHQDGSCNGLQHYAAL
Sbjct: 629  ASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAAL 688

Query: 2092 GRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRK 2271
            GRD++EAAAVNLVAGEKPADVY+EIA RV  I+  D++KDP T+PNA LAKLLIDQVDRK
Sbjct: 689  GRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRK 748

Query: 2272 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAA 2451
            LVKQTVMTSVYGVTY+GAREQIKRRLEEKGLI DDRL F ASCYAAKVTL+ALGE+F+AA
Sbjct: 749  LVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAA 808

Query: 2452 RGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVE 2631
            RG M WLGDCAKVIA +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQVLALQREG+ V+
Sbjct: 809  RGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVD 868

Query: 2632 VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKF 2811
            VRKQRTAFPPNFVHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVD+MN ILREKF
Sbjct: 869  VRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKF 928

Query: 2812 VELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            VELYSMP+LE LLE F+ +YP LTFP LP RGDFDL+EVL+SPYFFN
Sbjct: 929  VELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1280 bits (3313), Expect = 0.0
 Identities = 627/887 (70%), Positives = 733/887 (82%)
 Frame = +1

Query: 292  KIPNGFTNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKA 471
            +I  G ++KR+FIQDPPW++SLF+  L+   K VQ                     QIKA
Sbjct: 94   QITRGESSKRIFIQDPPWIASLFLKGLY---KCVQKEVKLEFMEIEKRKYNLLRRRQIKA 150

Query: 472  ETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRA 651
            ETEAW                KKLAPNLPYVKKL LGWFEPL+ AIE+EQK + ++K +A
Sbjct: 151  ETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKA 210

Query: 652  AYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFE 831
            A+APHI+ L ADKMA IVM+K          +D CVQVVQAAVQIG A+E EVRI +  E
Sbjct: 211  AFAPHIELLSADKMAGIVMYKMMGLLMMAA-QDGCVQVVQAAVQIGGAIEQEVRIQSILE 269

Query: 832  KTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAK 1011
            K + +Q+    A + E +++E  +LR +V  LI+R ++ EV+KL+K EE ++WG+DTQAK
Sbjct: 270  KARSNQRTKVRADT-ECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAK 328

Query: 1012 LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPL 1191
            LG RL+ELL E+A++QPPV QSAD+PPDIRPAF H F+   + PG++ VKKYGV+ECDP+
Sbjct: 329  LGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPI 388

Query: 1192 VVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTK 1371
            V+ G+DRT K M+IPY+PMLVPPKKW+GYDKGG+ +LPSY+MRTHGS RQQDA++N+  K
Sbjct: 389  VLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGK 448

Query: 1372 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEXX 1551
            QMQ+V+EALD LGSTKWRVN+ +LSVVES+WA GGN AGLVDRKDVPIPE    D+ E  
Sbjct: 449  QMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQ 508

Query: 1552 XXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNH 1731
                       INQELHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 509  EWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 568

Query: 1732 LSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDS 1911
            LSSDLCRG+LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL YD R+AFV++HLD+I DS
Sbjct: 569  LSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDS 628

Query: 1912 ANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAAL 2091
            A+NP+NG+RWWL AEDPFQCLAAC+NLSEALKSS+PHTVIS+LPIHQDGSCNGLQHYAAL
Sbjct: 629  ASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAAL 688

Query: 2092 GRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRK 2271
            GRD++EAAAVNLVAGEKPADVY+EIA RV  I+  D++KDP T+PNA LAKLLIDQVDRK
Sbjct: 689  GRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRK 748

Query: 2272 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAA 2451
            LVKQTVMTSVYGVTY+GAREQIKRRLEEKGLI DDRL F ASCYAAKVTL+ALGE+F+AA
Sbjct: 749  LVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAA 808

Query: 2452 RGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVE 2631
            RG M WLGDCAKVIA +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQVLALQREG+ V+
Sbjct: 809  RGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVD 868

Query: 2632 VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKF 2811
            VRKQRTAFPPNFVHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVD+MN ILREKF
Sbjct: 869  VRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKF 928

Query: 2812 VELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            VELYSMP+LE LLE F+ +YP LTFP LP RGDFDL+EVL+SPYFFN
Sbjct: 929  VELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1278 bits (3308), Expect = 0.0
 Identities = 626/835 (74%), Positives = 722/835 (86%), Gaps = 4/835 (0%)
 Frame = +1

Query: 460  QIKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEM-- 633
            Q+K ETEAW                KKLAPNLPYVK L LGWFEP+R+AI +EQK +   
Sbjct: 25   QVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGK 84

Query: 634  TQKHRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVR 813
            ++K RAAYAPHI+ LPADKMAVIVMHK         +E+  VQVVQAAV IG+A+E EVR
Sbjct: 85   SKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGA-QENGFVQVVQAAVHIGVAIEQEVR 143

Query: 814  IHNFFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWG 993
            IHNF EKTK +Q+  T  + Q  +S+E  IL+ RV SLI+R R+ EV+KL+K+EE + WG
Sbjct: 144  IHNFLEKTKNYQRKKTTDEVQ-GLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWG 202

Query: 994  KDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGV 1173
            +D QAKLG RLLELLTETAYVQPP+DQS D+PPD++PAFRH F+  ++DPGK ++K+YGV
Sbjct: 203  RDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGV 262

Query: 1174 IECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAV 1353
            IECDPL++ G+DR+ K M+IPYVPMLVPPKKW+GYDKGGYL+LPSY+MRTHGSR+QQDA+
Sbjct: 263  IECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAL 322

Query: 1354 RNVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HS 1530
            + V  K+MQ+V+EALDTLGSTKWRVNK++L+VVESIWA GGNIAGLVDR D+PIPE   S
Sbjct: 323  KGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSS 382

Query: 1531 DDIMEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYP 1710
            +D  E             IN+E HSQRCDTELKLSVARK+++EEGFYYPHNLDFRGRAYP
Sbjct: 383  EDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYP 442

Query: 1711 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENH 1890
            MHPHLNHLSSDLCRG+LEFAEGRPLG+SGL WLKIHLA+L+AGG+EKL +D R+AFV+NH
Sbjct: 443  MHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNH 502

Query: 1891 LDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 2070
            LDDI DSA NP+NGNRWWL AEDPFQCLAACINLSE+LKSSSPH+V+S+LPIHQDGSCNG
Sbjct: 503  LDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNG 562

Query: 2071 LQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLL 2250
            LQHYAALGRDS+EAAAVNLVAGEKPADVY+EIA+RV +I++ DS KDPAT+PNA LAKLL
Sbjct: 563  LQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLL 622

Query: 2251 IDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAAL 2430
            IDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I DDR+LF A+CY AKVTLAAL
Sbjct: 623  IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAAL 682

Query: 2431 GELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQ 2610
            GELFQAAR  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY+K++RH+IRTSLQVLALQ
Sbjct: 683  GELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQ 742

Query: 2611 REGDT-VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQM 2787
            REGD+ VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDV++M
Sbjct: 743  REGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKM 802

Query: 2788 NRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            N+ILREKFVELYSMP+LE+L ES Q SYP+L FPPLP+RG+FDLREVL+SPYFFN
Sbjct: 803  NQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 857


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1276 bits (3303), Expect = 0.0
 Identities = 623/880 (70%), Positives = 727/880 (82%), Gaps = 1/880 (0%)
 Frame = +1

Query: 316  KRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXX 495
            +R+F+QDPPW SS+F+  L+ R K  +                     Q+K ETEAW   
Sbjct: 137  RRIFVQDPPWFSSIFLKGLYKRIKLQE------YREMKKRKFNLLRRRQVKQETEAWERM 190

Query: 496  XXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDS 675
                         K+LAPNLP++K L LGWF PLR+AIE+EQK + T+K +AAYAPHI+ 
Sbjct: 191  VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIEL 250

Query: 676  LPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKH 855
            LPADK+AVIVMHK          EDRCVQVVQAAV IGMA+E E+RIH+F EKTK +++ 
Sbjct: 251  LPADKVAVIVMHKMMGLVMAGH-EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 309

Query: 856  MTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLEL 1035
               A ++E +S+E  +LR RV SLIK  RV E +KL+K+EE + WG+DTQAKLG RL+EL
Sbjct: 310  KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVEL 369

Query: 1036 LTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRT 1215
            L ETAYVQ PV+ +  +PPD+RPAFRH F+   + PG+   K+YGV+ECDPLV+ G+DR+
Sbjct: 370  LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRS 429

Query: 1216 VKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEA 1395
             K M+IPYVPMLVPPKKW+GY+KGGYL+LPSY+MRTHGSR+QQ+A+++V    M++V+EA
Sbjct: 430  AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 489

Query: 1396 LDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEXXXXXXXXX 1572
            LDTLGSTKWRVNK++LSV+ESIW  GGNIAGLVDR DVPIPE   S+D+ E         
Sbjct: 490  LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVR 549

Query: 1573 XXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 1752
                INQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CR
Sbjct: 550  KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 609

Query: 1753 GILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNG 1932
            G+LEFAEGRPLGKSGL WLKIHLA+L++GG+EKL +D R+AFVENHL +I DSA NP+NG
Sbjct: 610  GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 669

Query: 1933 NRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEA 2112
            +RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR+++EA
Sbjct: 670  SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 729

Query: 2113 AAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVM 2292
            AAVNLVAGEKPADVY+EIA+RV  I++ DS KDP+  P ALLAK+LIDQVDRKLVKQTVM
Sbjct: 730  AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 789

Query: 2293 TSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWL 2472
            TSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR  M WL
Sbjct: 790  TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 849

Query: 2473 GDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTA 2652
            GDCAKVIASENQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG +VE+RKQRTA
Sbjct: 850  GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTA 909

Query: 2653 FPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMP 2832
            FPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFVELY+MP
Sbjct: 910  FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMP 969

Query: 2833 ILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            ILE+LLESFQ SYP L+FPPLP+RG+FDL EVLESPYFFN
Sbjct: 970  ILENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1262 bits (3266), Expect = 0.0
 Identities = 618/880 (70%), Positives = 723/880 (82%), Gaps = 1/880 (0%)
 Frame = +1

Query: 316  KRVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXX 495
            +R+F+QDPPW SS+F+  L+ R K  +                     Q+K ETEAW   
Sbjct: 140  RRIFVQDPPWFSSIFLKGLYKRIKLQE------YREMKKRKFNLLRRRQVKQETEAWERM 193

Query: 496  XXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDS 675
                         K+LAPNLP++K L LGWF PL +AIE+EQK + T+K +AAYAPHI+ 
Sbjct: 194  VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIEL 253

Query: 676  LPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKH 855
            LPADKMAVIVMHK          EDRCVQVVQAAV IGMA+E E+RIH+F EKTK +++ 
Sbjct: 254  LPADKMAVIVMHKMMGLVMAGH-EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312

Query: 856  MTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLEL 1035
               A ++E +S+E  +LR RV SLIK  RV E +KL+K+EE + WG+DTQAKLG RL+EL
Sbjct: 313  KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVEL 372

Query: 1036 LTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRT 1215
            L ETAYVQ PV+ +  +PPD+RPAFRH F+   + PG+   K+YGV+ECDPLV+ G+DR+
Sbjct: 373  LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432

Query: 1216 VKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEA 1395
             K M+IPYVPMLVPPKKW+GY+KGGYL+LPSY+MRTHGSR+QQ+A+++V    M++V+EA
Sbjct: 433  AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492

Query: 1396 LDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEXXXXXXXXX 1572
            LDTLGSTKWRVNK++LSV+ESIW  GGNIAGLVDR DV IPE   S+D+ E         
Sbjct: 493  LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552

Query: 1573 XXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 1752
                INQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CR
Sbjct: 553  KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612

Query: 1753 GILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNG 1932
            G+LEFAEGRPLGKSGL WLKIHLA+L++GG+EKL +D R+AFVENHL +I DSA NP+NG
Sbjct: 613  GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672

Query: 1933 NRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEA 2112
            +RWWL AEDPFQCLAACINL+EALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR+++EA
Sbjct: 673  SRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732

Query: 2113 AAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVM 2292
            AAVNLVAGEKPADVY+EIA+RV  I++ DS KD +  P ALLAK+LIDQVDRKLVKQTVM
Sbjct: 733  AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVM 792

Query: 2293 TSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWL 2472
            TSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR  M WL
Sbjct: 793  TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852

Query: 2473 GDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTA 2652
            GDCAKVIASENQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ VE+RKQRTA
Sbjct: 853  GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTA 912

Query: 2653 FPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMP 2832
            FPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFVELY+MP
Sbjct: 913  FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMP 972

Query: 2833 ILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            +LE+LLESFQ SYP L+FP LP+RG+FDL EVLESPYFFN
Sbjct: 973  MLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1247 bits (3227), Expect = 0.0
 Identities = 617/940 (65%), Positives = 743/940 (79%), Gaps = 10/940 (1%)
 Frame = +1

Query: 163  SSSFPQTLKLPSIQMTI--TVHYEAVCVSTDXXXXXXXXXXXXXKKIPNGFTNK------ 318
            S+SFP TL LPS+   +  T  ++    S               +K+   F N       
Sbjct: 60   SNSFPSTLSLPSLTPKLGKTSFFQP---SPQSQIILDSPEEELAEKMDGHFRNSDKIKGS 116

Query: 319  -RVFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAETEAWXXX 495
             R+F+QDPPWV++LFM  L      ++                     QIKAETEAW   
Sbjct: 117  SRIFMQDPPWVNTLFMKGLVDSNTGLR----LEFKEIEREKYNLLRRRQIKAETEAWESM 172

Query: 496  XXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQKHRAAYAPHIDS 675
                         KKLAPNLP VK L LGWFEPL++AIEKEQK++ ++K +A Y  HID 
Sbjct: 173  VEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDM 232

Query: 676  LPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFEKTKKHQKH 855
            LPADKMAVIVMHK          +  CV++VQAA+QIG A+E E++IH+F EKTK  +K+
Sbjct: 233  LPADKMAVIVMHKMMSLLMVG-NDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIRKN 291

Query: 856  MTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAKLGCRLLEL 1035
               +   ED+ +E  I RNRVKSLIKR R+FE  KL+ SE+ +SW +DTQAKLG RL+EL
Sbjct: 292  --ASDLPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLIEL 349

Query: 1036 LTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPLVVVGVDRT 1215
            L +TAY+Q P  QSADTPPD+RPAFRH F+I   + G+ +VK+YGVIECDPLV+ G+DR+
Sbjct: 350  LIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRS 409

Query: 1216 VKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTKQMQQVYEA 1395
             + M+IPYVPML+PPK W+GYDKGGYL+LPSY+MRTHGSR+QQDA+R  P +QMQ+V+EA
Sbjct: 410  ARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEA 469

Query: 1396 LDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEXXXXXXXXX 1572
            L+TLG TKWR+N+++L VVE++WA GGNI GLV+  DVP+PE   ++D  E         
Sbjct: 470  LNTLGHTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVR 529

Query: 1573 XXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 1752
                IN+E H+ RCD ELK+SVA+K+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR
Sbjct: 530  KAKKINRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 589

Query: 1753 GILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILDSANNPLNG 1932
            G+LEFA GRPLGK+GL WLKIHLA++YAGG++KL Y+AR AFVENHL+++ DSA NP+NG
Sbjct: 590  GVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPING 649

Query: 1933 NRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEA 2112
            NRWWL+AEDPFQCLAACI+L+ AL SSSPH+ IS+LPIHQDGSCNGLQHYAALGRDS EA
Sbjct: 650  NRWWLSAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEA 709

Query: 2113 AAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDRKLVKQTVM 2292
            AAVNLVAGE+PADVY+EIA+RV  I+  DS KDP TDP+A+LAK+L+DQVDRKLVKQTVM
Sbjct: 710  AAVNLVAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVM 769

Query: 2293 TSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWL 2472
            TSVYGVT+VGAREQIKRRLEEKG+I DDRLLF+A+CY+AKVT++ALG+LFQAARG M WL
Sbjct: 770  TSVYGVTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWL 829

Query: 2473 GDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTA 2652
            GDCAKVIASENQPVRWTTPLGLPVVQPY K++RH+I+TSLQVLALQ+EG+ +EV+KQRTA
Sbjct: 830  GDCAKVIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTA 889

Query: 2653 FPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMP 2832
            FPPN+VHSLDG+HMMMTAVACRDAGLQFAGVHDSFWTHACDV++MN+ILR KFVELY+MP
Sbjct: 890  FPPNYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNMP 949

Query: 2833 ILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            ILE+LLESFQ +YPA TFPPLP+RGDFDL EVLESPYFFN
Sbjct: 950  ILENLLESFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 951

 Score = 1237 bits (3201), Expect = 0.0
 Identities = 622/952 (65%), Positives = 736/952 (77%), Gaps = 3/952 (0%)
 Frame = +1

Query: 106  QNTHKFNHIHNQEFRKIPQSSSFPQTLKLPSIQMTITVHYEAVCVSTDXXXXXXXXXXXX 285
            Q+ H F    N  F   P  SS P T+K P  Q  ++      CV               
Sbjct: 22   QSLHHFLFFPNPIFCCFP--SSIPLTIKTPRTQFHLSASVHDNCVQK-LENLHEPVNGVH 78

Query: 286  XKKIPNGFTNKRVFIQDPPWV-SSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQ 462
              + P+    +R+FIQ+ PW+ + L +N +    K                        Q
Sbjct: 79   QTEPPD--PPQRIFIQNSPWILNDLLLNDIEEEKK-----------------LNLLRRRQ 119

Query: 463  IKAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEMTQK 642
            IKAETEA                 K L PNLP+VK L LGWF+PL++AIE EQK++ ++K
Sbjct: 120  IKAETEALEKMVEEYRELEREMREKNLTPNLPHVKALFLGWFDPLKEAIEAEQKSKRSKK 179

Query: 643  HRAAYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHN 822
            H+AA+APHIDSLPA K+AVIVMHK         +   CV +V AAVQIGMAVE EVRIH 
Sbjct: 180  HKAAFAPHIDSLPAAKLAVIVMHKVMGLVTQEYRRAGCVLLVDAAVQIGMAVEQEVRIHK 239

Query: 823  FFEKTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDT 1002
            F EKT+ HQ   T A  ++ +  +   LR  V  LIKR R+ +V+ L+K +E   WG+DT
Sbjct: 240  FLEKTRSHQSKKTEAGDEDSMDNDKQKLRKHVNGLIKRRRLKQVQMLLKEKESGPWGRDT 299

Query: 1003 QAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIEC 1182
            QAKLG RL+ELL ETA+V  PV+QSADTPPDIRPAFRH F+  +++P + I+K YGVIEC
Sbjct: 300  QAKLGSRLIELLIETAFVHSPVNQSADTPPDIRPAFRHKFKAISKNPEQKILKNYGVIEC 359

Query: 1183 DPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNV 1362
            DPLV+ G+D++VK M++PY+PMLVPPKKW+GY+KGG+L+LPSY+MRTHGS++QQD ++NV
Sbjct: 360  DPLVLAGMDKSVKHMLMPYMPMLVPPKKWKGYEKGGHLFLPSYIMRTHGSKKQQDVMKNV 419

Query: 1363 PTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHS-DDI 1539
              KQMQ+V+EALDTLG+TKWRVN+R+L+VVES+WAGGGNIAGL+DRKDVPIPE     D+
Sbjct: 420  ERKQMQKVFEALDTLGNTKWRVNRRLLNVVESLWAGGGNIAGLIDRKDVPIPERPPLGDL 479

Query: 1540 MEXXXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHP 1719
             +             IN E HS RCDTELKLSVA+K+KDEEGFYYPHN+DFRGRAYPMH 
Sbjct: 480  KQIQEWKWSVRKAEKINLERHSLRCDTELKLSVAQKMKDEEGFYYPHNVDFRGRAYPMHS 539

Query: 1720 HLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDD 1899
            HLNHLS DLCRG+LEFAEGRPLG+SGLCWLKIHLA+LYAGGIEKL YD R+AFVENHL D
Sbjct: 540  HLNHLSCDLCRGLLEFAEGRPLGESGLCWLKIHLANLYAGGIEKLSYDGRLAFVENHLHD 599

Query: 1900 ILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQH 2079
            I DSA+NP+NGNRWWL A+DPFQCLAACINLSEAL+SSSP++VI HLPIHQDGSCNGLQH
Sbjct: 600  IFDSADNPINGNRWWLMADDPFQCLAACINLSEALRSSSPNSVILHLPIHQDGSCNGLQH 659

Query: 2080 YAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQ 2259
            YAALGRDS+EAAAVNLVA EKPADVY+EIA+RV  I+R D  KDPA  PNALLAK+LIDQ
Sbjct: 660  YAALGRDSLEAAAVNLVASEKPADVYSEIAVRVHDIMRKDCIKDPAAYPNALLAKVLIDQ 719

Query: 2260 VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGEL 2439
            +DRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKGLI D++LLF A+CYAAKVTL ALGE+
Sbjct: 720  IDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFAAACYAAKVTLTALGEI 779

Query: 2440 FQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREG 2619
            F AAR  M WLGDCAKVIA ENQPVRWTTPLGLPVVQPY KT+RH+I+TSLQ LAL+REG
Sbjct: 780  FGAARVIMGWLGDCAKVIAFENQPVRWTTPLGLPVVQPYCKTERHLIKTSLQFLALRREG 839

Query: 2620 DTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRIL 2799
            + V+ +KQR+AFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++M++IL
Sbjct: 840  NAVDAKKQRSAFPPNFVHSLDGSHMMMTALACRDAGLCFAGVHDSFWTHACDVEKMSQIL 899

Query: 2800 REKFVELYSMPILEDLLESFQESYPALTFPPLP-KRGDFDLREVLESPYFFN 2952
            REKFVELYSMPILE+LLE F+ SYP LTFPPLP +RGDFDL++VLESPYFFN
Sbjct: 900  REKFVELYSMPILENLLEGFETSYPGLTFPPLPERRGDFDLQKVLESPYFFN 951


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score = 1234 bits (3194), Expect = 0.0
 Identities = 604/888 (68%), Positives = 720/888 (81%), Gaps = 4/888 (0%)
 Frame = +1

Query: 301  NGFTNKR-VFIQDPPWVSSLFMNSLFVRAKQVQGVXXXXXXXXXXXXXXXXXXXQIKAET 477
            NG + +R +F+QDPPW+S+LF+  L   +K V                      Q+K ET
Sbjct: 115  NGLSGRRRLFMQDPPWISALFLKGL---SKMVDQTVKIERKDIDKRKFDSLRRRQVKEET 171

Query: 478  EAWXXXXXXXXXXXXXXXXKKLAPNLPYVKKLLLGWFEPLRQAIEKEQKAEM--TQKHRA 651
            EAW                K LAPNLPYVK + LGWF+PL+  IE+EQK +   ++K RA
Sbjct: 172  EAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRA 231

Query: 652  AYAPHIDSLPADKMAVIVMHKXXXXXXXXXKEDRCVQVVQAAVQIGMAVENEVRIHNFFE 831
            AYAPHI+ LPADKMAVIVMHK          ED C+QVVQAAV IG+A+E EVRIHNF +
Sbjct: 232  AYAPHIELLPADKMAVIVMHKMMGLVMSGH-EDGCIQVVQAAVSIGIAIEQEVRIHNFLK 290

Query: 832  KTKKHQKHMTGAQSQEDISRETMILRNRVKSLIKRNRVFEVRKLIKSEEPESWGKDTQAK 1011
            +T+K+      A   E+  ++  +LR RV SLI+R R+ +  K++KSE  + WG+ TQAK
Sbjct: 291  RTRKNN-----AGDSEEELKDKQLLRKRVNSLIRRKRIIDALKVVKSEGIKPWGRATQAK 345

Query: 1012 LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHIFRIATRDPGKSIVKKYGVIECDPL 1191
            LG RLLELL ETAYVQPP+ Q+ DT P+ RPAFRH F+  T+ PG  +V++YGVIECD L
Sbjct: 346  LGSRLLELLIETAYVQPPLTQAGDTIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECDSL 405

Query: 1192 VVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLYLPSYLMRTHGSRRQQDAVRNVPTK 1371
            ++ G+D++ K M+IPYVPMLVPPK+W+GYDKGGYL+LPSY+MRTHGS++QQDA+R++ +K
Sbjct: 406  LLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSK 465

Query: 1372 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEX 1548
               +V+EALDTLG+TKWRVN++IL VVE +WA GGNIAGLV+R+DVPIPE   S+D  E 
Sbjct: 466  TAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEI 525

Query: 1549 XXXXXXXXXXXXINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 1728
                        IN+E HS RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLN
Sbjct: 526  QSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLN 585

Query: 1729 HLSSDLCRGILEFAEGRPLGKSGLCWLKIHLASLYAGGIEKLCYDARIAFVENHLDDILD 1908
            HLSSDLCRG LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL +D R+AFVENHLD+I+D
Sbjct: 586  HLSSDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDNIMD 645

Query: 1909 SANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAA 2088
            SA NP++G RWWL AEDPFQCLAAC+ L++ALKS SP++VISHLPIHQDGSCNGLQHYAA
Sbjct: 646  SAENPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAA 705

Query: 2089 LGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRVDSTKDPATDPNALLAKLLIDQVDR 2268
            LGRDS EAAAVNLVAGEKPADVY+EI+LRV  I++ DS+KDP ++P A LAK+LI+QVDR
Sbjct: 706  LGRDSFEAAAVNLVAGEKPADVYSEISLRVHEIMKKDSSKDPESNPTAALAKILINQVDR 765

Query: 2269 KLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQA 2448
            KLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I D+R+LF+A+CYAAKVTLAALGE+F+A
Sbjct: 766  KLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERMLFSAACYAAKVTLAALGEIFEA 825

Query: 2449 ARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTV 2628
            AR  M+WLGDCAK+IAS+N PVRW TPLGLPVVQPY +++RH+IRTSLQVLALQREG+TV
Sbjct: 826  ARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTV 885

Query: 2629 EVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREK 2808
            +VRKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL FAGVHDS+WTHACDVD MNRILREK
Sbjct: 886  DVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREK 945

Query: 2809 FVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 2952
            FVELY+ PILEDLL+SFQESYP L FPP+PKRGDFDL+EVL+S YFFN
Sbjct: 946  FVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993