BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00006560
         (1567 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cry...   682   0.0  
gb|AFO65948.1| RNA-dependent RNA polymerase [Alphacryptovirus JF...   635   e-179
ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Rapha...   592   e-166
dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]        569   e-159
ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryp...   567   e-159
gb|AEJ07892.1| putative RNA-dependent RNA polymerase [Pepper cry...   541   e-151
gb|AGH12859.1| RNA-dependent RNA polymerase [Citrullus lanatus c...   530   e-148
gb|ADP24757.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]    511   e-142
gb|AGQ49482.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]    508   e-141
gb|AAB27624.1| putative RNA-dependent RNA polymerase [Beet crypt...   499   e-138
gb|ABC96789.2| RNA-dependent RNA polymerase-like protein [Pepper...   429   e-117
gb|ABU55400.1| RNA-dependent RNA polymerase [Black raspberry cry...   415   e-113
gb|ADE34113.1| putative RNA-dependent RNA polymerase [Pittosporu...   342   3e-91
emb|CDL67777.1| RNA dependent RNA polymerase [Pigeon pea latent ...   267   1e-68
ref|YP_001686783.1| putative RNA dependent RNA polymerse [Raphan...   251   8e-64
ref|YP_004429258.1| RNA-dependent RNA polymerase [Fig cryptic vi...   250   1e-63
ref|YP_001274391.1| RNA-dependent RNA polymerase [Fragaria chilo...   246   3e-62
gb|ADE76327.1| unknown [Picea sitchensis]                             243   2e-61
gb|ABV89762.1| putative RNA-dependent RNA polymerase [Rosa multi...   239   3e-60
ref|YP_001686786.1| RNA-dependent RNA polymerase [Rose cryptic v...   239   3e-60

>gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 1]
          Length = 479

 Score =  682 bits (1759), Expect = 0.0
 Identities = 328/481 (68%), Positives = 388/481 (80%)
 Frame = +3

Query: 84   MVQGTLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRG 263
            MV+GTLVGY++T F+ +  K+  +HPHV+ RE A TYVD++A+E IE  S L PE  L+G
Sbjct: 1    MVRGTLVGYDYTQFQGDLVKSTHRHPHVVHREIATTYVDQYAYEHIETFSSLYPELILKG 60

Query: 264  WSRSYYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELD 443
            WSRSYYLPEKHL A+L + +PN+PAS ++   Y+QA+  AKNG  SLPRV+A DVLTE+D
Sbjct: 61   WSRSYYLPEKHLAAVLNYSMPNVPASQLSQSLYRQAIESAKNGFISLPRVKAFDVLTEMD 120

Query: 444  QVSYKSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVG 623
            QV +KSSS+AGY+Y G KG     NH RAI+ AKAVLWSAI DDGEGI+HVI T+VPDVG
Sbjct: 121  QVPFKSSSSAGYNYTGRKGLIGDENHSRAISIAKAVLWSAIKDDGEGIEHVIRTSVPDVG 180

Query: 624  YTRTQLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNL 803
            YTRTQL DL+EKTKVRQVWGRAFHYILLEG+VA P IQ V++H+TFIHAGQDP  SVP L
Sbjct: 181  YTRTQLTDLLEKTKVRQVWGRAFHYILLEGLVAYPFIQTVMSHKTFIHAGQDPLISVPRL 240

Query: 804  LSTVVSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFI 983
            LS V  +   KW+YSLDW QFDA+VS FEI+AAFDII+  V+FPNYET Q FEITRQLFI
Sbjct: 241  LSDVALN--CKWIYSLDWSQFDATVSRFEIHAAFDIIKSYVDFPNYETEQAFEITRQLFI 298

Query: 984  HKKVAAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXX 1163
            HKKVA PDG++Y  HKGIPSGSYYTSL+GSIINYLRINYLWR +TGHPP+  +T      
Sbjct: 299  HKKVAVPDGYIYESHKGIPSGSYYTSLVGSIINYLRINYLWRLLTGHPPQQCHTLGDDSL 358

Query: 1164 XXXXXXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLL 1343
                    P  I E A+++GW FNPDKT+YSTVPEEITFLGRT +GGLNKR+L +C+RLL
Sbjct: 359  VGDNSYVNPQAIEEAANKLGWHFNPDKTQYSTVPEEITFLGRTYVGGLNKRDLTKCIRLL 418

Query: 1344 VYPEYPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRYTFG 1523
            VYPEYPVESGRISAYRA+SIA DAGGLS++LNR+A +L+R YG ASE EVP YFKRY FG
Sbjct: 419  VYPEYPVESGRISAYRAKSIAQDAGGLSEVLNRIADKLRRIYGTASEEEVPIYFKRYVFG 478

Query: 1524 M 1526
            +
Sbjct: 479  V 479


>gb|AFO65948.1| RNA-dependent RNA polymerase [Alphacryptovirus JF-2012]
          Length = 478

 Score =  635 bits (1639), Expect = e-179
 Identities = 306/473 (64%), Positives = 370/473 (78%)
 Frame = +3

Query: 96   TLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRS 275
            ++ GY++TNF  +  K++++HPHV+RRETA TY D+FAF+++    +L   Q L GWSRS
Sbjct: 4    SITGYDYTNFTQDLLKSDRKHPHVVRRETATTYRDDFAFKEVVSFDRLAYIQRLEGWSRS 63

Query: 276  YYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSY 455
            YYLPEKHLEA+LQ+  PN+P + +N+  Y QA+   +NGL SL  VRA DVLTEL+Q+SY
Sbjct: 64   YYLPEKHLEALLQYATPNVPCTALNLNVYCQAIQVVENGLRSLQPVRAFDVLTELNQISY 123

Query: 456  KSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRT 635
            K SSAAGYDY+G KGP  G NHKR I+RAKAVLWS + +DGEGI H I T+VPDVGYTRT
Sbjct: 124  KQSSAAGYDYIGAKGPIDGENHKRTISRAKAVLWSVVKEDGEGIDHAIETSVPDVGYTRT 183

Query: 636  QLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTV 815
            QLADL EKTKVRQVWGRAFHYILLEG+VA P IQ+++   +FIH G+DPT SVP  L+ V
Sbjct: 184  QLADLTEKTKVRQVWGRAFHYILLEGLVAQPFIQSIMEGPSFIHTGRDPTLSVPQSLAKV 243

Query: 816  VSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKV 995
             S  + K++YSLDWK FDA+V+ FEIN +FDII+  V FPNYET Q FEITRQLF+HKKV
Sbjct: 244  SS--QCKYIYSLDWKSFDATVNRFEINTSFDIIKSKVIFPNYETEQAFEITRQLFLHKKV 301

Query: 996  AAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXX 1175
            AAPDG++Y  HKGIPSGSYYTS++GSI+N LRI Y+WR  TGH P H  T          
Sbjct: 302  AAPDGYIYEAHKGIPSGSYYTSMVGSIVNRLRIEYIWRIATGHGPIHCETLVDDSLCGDD 361

Query: 1176 XXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPE 1355
                   +A+ A+RIGW FN DKTEYST+PE +TFLGRTS G LN R+L +CLRLLVYPE
Sbjct: 362  IFVPATQLADIANRIGWYFNADKTEYSTIPEGVTFLGRTSTGNLNSRDLTKCLRLLVYPE 421

Query: 1356 YPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
            YPV SGRISAYRARSIADD+GGLSD+LN+VA RL+R+YGIASE E+P YFKRY
Sbjct: 422  YPVTSGRISAYRARSIADDSGGLSDLLNQVAIRLERSYGIASEEEIPAYFKRY 474


>ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Raphanus sativus cryptic virus
            3] gi|217039787|gb|ACJ76981.1| putative RNA-dependent RNA
            polymerase [Raphanus sativus cryptic virus 3]
          Length = 481

 Score =  592 bits (1526), Expect = e-166
 Identities = 298/479 (62%), Positives = 355/479 (74%)
 Frame = +3

Query: 78   LKMVQGTLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFL 257
            ++ ++  L GY +T F ++ E+TNQ+H +VIRRETAVTY DEFA + I D+     EQ L
Sbjct: 1    MRRLRNPLAGYVYTGFISDLEETNQRHTNVIRRETAVTYRDEFALQSILDLDYRQYEQHL 60

Query: 258  RGWSRSYYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTE 437
            +GWSRSYY PEKH EAILQ+  P++P   I ++ Y   +   +N   SLP VRA  VLT+
Sbjct: 61   QGWSRSYYTPEKHQEAILQYSYPDIPVQAIKMDVYNDCIAQVQNEFRSLPNVRAYSVLTQ 120

Query: 438  LDQVSYKSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPD 617
            LD V YKSSSAAGY Y G KG     NH RAI+RAKAVLWSAIA DGEGI+HVI T+ PD
Sbjct: 121  LDLVKYKSSSAAGYGYQGTKGNPGELNHARAISRAKAVLWSAIAADGEGIEHVIKTSTPD 180

Query: 618  VGYTRTQLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVP 797
            +GYTRTQL DL EKTKVRQVWGRAFHYILLEG+VADP IQAV+ + TFIHAG+DPT SVP
Sbjct: 181  IGYTRTQLTDLTEKTKVRQVWGRAFHYILLEGLVADPFIQAVMENNTFIHAGRDPTLSVP 240

Query: 798  NLLSTVVSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQL 977
             LLS +    +  W+YSLDWKQFDA+VS FEI +AF II+    FP+ ET   FEIT+QL
Sbjct: 241  QLLSHIAETSD--WIYSLDWKQFDATVSRFEIESAFTIIKSKTIFPDRETEDAFEITKQL 298

Query: 978  FIHKKVAAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXX 1157
            FIHKKVAAPDG +Y  HKGIPSGSYYTSL+GSI+N LRI YL+R + G  P+  +T    
Sbjct: 299  FIHKKVAAPDGKIYFAHKGIPSGSYYTSLVGSIVNRLRIEYLYRLILGRGPKICHTLGDD 358

Query: 1158 XXXXXXXXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLR 1337
                      P      A+RIGW FN +KTEYS +PE ++FLGR+  GGLN R+L RCLR
Sbjct: 359  SLVGDDELIVPSSFGLIANRIGWYFNIEKTEYSRIPEMVSFLGRSYKGGLNVRDLKRCLR 418

Query: 1338 LLVYPEYPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
            LLV+PEYPV SGRISAYRA+SIA+D GG+SD+LNRVA RLKR YG+ASE EVP YFKRY
Sbjct: 419  LLVFPEYPVPSGRISAYRAKSIAEDCGGISDLLNRVAARLKRQYGLASEEEVPIYFKRY 477


>dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]
          Length = 477

 Score =  569 bits (1466), Expect = e-159
 Identities = 278/478 (58%), Positives = 351/478 (73%), Gaps = 1/478 (0%)
 Frame = +3

Query: 84   MVQGTLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRG 263
            M Q    G+ F ++  E E  NQ H H +RRE+  TYVD+FA  ++ D+      QF++G
Sbjct: 1    MEQNAFNGFEFVDYSEELENLNQNHIHKVRRESNTTYVDKFAERELIDLHPEYHRQFIQG 60

Query: 264  WSRSYYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELD 443
            WSRSYY  E+H+EA+L +G  N+P  +++   YQ  +   KNGL SLPRV+A DVLTEL+
Sbjct: 61   WSRSYYNTERHMEALLNYGTRNIPVDNVDYNLYQGCIDTVKNGLRSLPRVKAFDVLTELN 120

Query: 444  QVSYKSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDG-EGIQHVINTAVPDV 620
             VSYKSS+AAGY+Y+G KGP  G NHK+AI RA+A +   ++D+G EG++  I TAVPDV
Sbjct: 121  LVSYKSSTAAGYNYMGAKGPFDGYNHKQAIRRARATVGD-VSDNGIEGLRRAITTAVPDV 179

Query: 621  GYTRTQLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPN 800
            GYTRTQL DL EKTK+R VWGRAFHYIL+EG  ADPLI+     ++F H G+DP  SVP+
Sbjct: 180  GYTRTQLTDLTEKTKIRNVWGRAFHYILIEGTSADPLIRMFSKTKSFYHIGRDPLDSVPD 239

Query: 801  LLSTVVSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLF 980
            +LS      + +WLY++DWKQFDA+VS FEINAAFDII +L+EFPNY T   FE++RQLF
Sbjct: 240  VLSETAG--KARWLYAIDWKQFDATVSRFEINAAFDIIMDLIEFPNYPTYVAFELSRQLF 297

Query: 981  IHKKVAAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXX 1160
            IHKK+AAPDG++Y  HKGIPSGSY+TS+IGSIIN LRI YLWR +TGH P   YT     
Sbjct: 298  IHKKIAAPDGYIYWSHKGIPSGSYFTSIIGSIINRLRIEYLWRKITGHGPLACYTQGDDS 357

Query: 1161 XXXXXXXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRL 1340
                     P   AE A++IGW  NP+KTEYST+P E+ FLGRT LGGLN R + RCLRL
Sbjct: 358  LSCDDEFTPPEKFAEIANQIGWVLNPEKTEYSTIPSEVHFLGRTMLGGLNTREIKRCLRL 417

Query: 1341 LVYPEYPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
            L+YPEYPV+SGRISAYRA+SI++D G LS++LN++  RL+  YGIAS+ EVP YFKRY
Sbjct: 418  LIYPEYPVDSGRISAYRAKSISEDVGRLSELLNKIERRLQGQYGIASDEEVPDYFKRY 475


>ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryptic virus]
            gi|388877111|emb|CCH50609.1| RNA dependent RNA polymerase
            [Persimmon cryptic virus]
          Length = 477

 Score =  567 bits (1462), Expect = e-159
 Identities = 289/477 (60%), Positives = 342/477 (71%)
 Frame = +3

Query: 84   MVQGTLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRG 263
            M   ++ GY F +F++  E  NQ H H++RRE+ VTY DEFA  ++   +  L EQ L G
Sbjct: 1    MALRSITGYEFHDFQSSLELLNQTHIHIVRRESGVTYHDEFALCELLVDNTRLYEQELEG 60

Query: 264  WSRSYYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELD 443
            WSRSYY  E+H++AILQ+ LPN P   I++  YQQAM + +  LSSLP VRA DVLT+LD
Sbjct: 61   WSRSYYTGEQHMKAILQYSLPNTPIQDIDVGCYQQAMTNVQERLSSLPIVRAFDVLTQLD 120

Query: 444  QVSYKSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVG 623
            QVS++SSSAAGYDY G KGPK+  NH+RAI RAKAVLWSAIA DGEGI+HV+ ++VPDVG
Sbjct: 121  QVSFESSSAAGYDYTGAKGPKNEGNHERAIRRAKAVLWSAIAQDGEGIEHVLRSSVPDVG 180

Query: 624  YTRTQLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNL 803
            YTRTQL DL EKTKVR VWGRAFHYIL EG  ADPL+QA     TF H GQDPT SVP +
Sbjct: 181  YTRTQLTDLSEKTKVRGVWGRAFHYILPEGTSADPLLQAFKEGGTFYHIGQDPTVSVPYI 240

Query: 804  LSTVVSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFI 983
            LS      +  WLY+LDW  FDA+VS FEI+AAFD++++ +EFPN+ET QC+EI RQLFI
Sbjct: 241  LSDTAG--KCAWLYALDWSSFDATVSRFEIHAAFDLLKQRIEFPNFETEQCYEICRQLFI 298

Query: 984  HKKVAAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXX 1163
            HKK+AAPDG VY  HKGIPSGSYYTS+IGSIIN LRI Y+W  + GH P   YT      
Sbjct: 299  HKKIAAPDGKVYWAHKGIPSGSYYTSIIGSIINRLRIEYIWIKLRGHGPTICYTQGDDSL 358

Query: 1164 XXXXXXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLL 1343
                    P  IA+ A+ IGW  NP KT  +  PE ITFLGRT  GGLN R+L RCLRLL
Sbjct: 359  CGDDERIEPERIADIANPIGWLINPAKTATTRYPEYITFLGRTCYGGLNHRDLIRCLRLL 418

Query: 1344 VYPEYPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
            +YPEYPV SG ISAYRA SIA+D GG S ILN +A RL R YG  S  EVP   + Y
Sbjct: 419  IYPEYPVPSGAISAYRANSIAEDCGGTSSILNDIARRLTRKYGRVSHEEVPKELRVY 475


>gb|AEJ07892.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 2]
          Length = 478

 Score =  541 bits (1394), Expect = e-151
 Identities = 273/472 (57%), Positives = 338/472 (71%)
 Frame = +3

Query: 99   LVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSY 278
            L GY FT F N+ EK +Q+H H IRRE A TY DEFA +++ D+S +L EQFL GWSRSY
Sbjct: 7    LNGYVFTAFGNDLEKLDQRHIHHIRREEATTYRDEFALKELMDLSPILYEQFLEGWSRSY 66

Query: 279  YLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYK 458
            Y   KHL+AI+Q+G+P+     I+ + Y +A       L SLPRVRA DVLTELD V Y+
Sbjct: 67   YEGSKHLQAIIQYGIPDPDPGLIDNDIYNKAGYVVLESLGSLPRVRAFDVLTELDSVHYE 126

Query: 459  SSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQ 638
             SS+AGYDY G KGP  G NH RAITRAKA LWSAI D+GEGI+HVI +AVPDVGYTRTQ
Sbjct: 127  QSSSAGYDYHGPKGPIQGENHIRAITRAKATLWSAIKDEGEGIEHVIRSAVPDVGYTRTQ 186

Query: 639  LADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVV 818
            L DL EKTK+R VWGRAFHYILLEG +A+PL+       TF H G++P YSVP++LS V 
Sbjct: 187  LTDLYEKTKIRGVWGRAFHYILLEGTIANPLLDVFKRGGTFYHIGENPQYSVPDILSQV- 245

Query: 819  SDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVA 998
                 K+L ++DW  FDA+V+ FEIN AFD+I+ L+ FPN ET  CFEI RQLFIHKK+A
Sbjct: 246  -SECCKYLVAIDWSNFDATVARFEINMAFDLIKTLIMFPNIETELCFEICRQLFIHKKIA 304

Query: 999  APDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXX 1178
            APDG +Y   KGIPSGSY+TS+IGSI+N LR+ Y++R      P+  YT           
Sbjct: 305  APDGNIYWSRKGIPSGSYFTSIIGSIVNRLRVEYIFRKAYDVGPKMCYTQGDDSLIGVDF 364

Query: 1179 XXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEY 1358
               P  ++E A+ + W+ NP KT+ S  PE +TFLGRT  GG+N+R+L RCLRLL++PE+
Sbjct: 365  RVDPDRLSEIAAPLNWKLNPAKTDVSLYPEHVTFLGRTMYGGINQRDLKRCLRLLIFPEF 424

Query: 1359 PVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
            PV SG ISAYRA SIA DAGG S+ILN +A RL+R YG+A E+ VP +FK Y
Sbjct: 425  PVPSGEISAYRAVSIAQDAGGTSEILNSIAKRLRRQYGVAEEHAVPKHFKLY 476


>gb|AGH12859.1| RNA-dependent RNA polymerase [Citrullus lanatus cryptic virus]
          Length = 415

 Score =  530 bits (1364), Expect = e-148
 Identities = 267/415 (64%), Positives = 323/415 (77%), Gaps = 1/415 (0%)
 Frame = +3

Query: 225  DISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSL 404
            +IS LL EQ L GWSRSYYL +KH++AI+Q+G  ++P S IN   Y++ + + +N LSSL
Sbjct: 2    NISPLLYEQCLSGWSRSYYLHDKHMQAIIQYGYKDVPISSINDRLYKECVHEVQNRLSSL 61

Query: 405  PRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGE- 581
            PRVRALDVL+ELD V++KSSSAAGYDY+G KGPK G NH RA++RAKA++WS IA+ GE 
Sbjct: 62   PRVRALDVLSELDSVTFKSSSAAGYDYIGAKGPKGGENHTRAMSRAKAIMWS-IAETGET 120

Query: 582  GIQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTF 761
            G++H I TAVPDVGYTRTQLAD+ EKTKVR VWGRAFHYILLEG+ ADPLI+AV    TF
Sbjct: 121  GMKHAIETAVPDVGYTRTQLADITEKTKVRHVWGRAFHYILLEGLTADPLIRAVQRADTF 180

Query: 762  IHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNY 941
            IH G+DPT SVP LLS      + KWLY+LDWKQFDA+VS FEI AAFDI+  L++FPN 
Sbjct: 181  IHIGKDPTVSVPRLLSDTAE--QCKWLYALDWKQFDATVSRFEIEAAFDIVLNLLDFPNR 238

Query: 942  ETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTG 1121
            ET   FE+++QLFIHKK+AAPDG +Y  HKGIPSGSY+TS+IGSIIN   I  LWRT+TG
Sbjct: 239  ETKLMFELSKQLFIHKKIAAPDGKIYWAHKGIPSGSYFTSIIGSIINRTEILMLWRTITG 298

Query: 1122 HPPRHLYTXXXXXXXXXXXXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLG 1301
            H P   YT              P   A  A+ IGW FN +KTEYST+PE ITFLGR+  G
Sbjct: 299  HGPIVCYTQGDDSLCGDNILIPPERFAMVANPIGWYFNQEKTEYSTIPELITFLGRSYAG 358

Query: 1302 GLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRT 1466
            GLNKR+L RCLRLL++PEYPVESGRISAYRA+SI+DD GGL D+LN++A RL+R+
Sbjct: 359  GLNKRDLKRCLRLLIFPEYPVESGRISAYRAQSISDDVGGLGDVLNKLADRLRRS 413


>gb|ADP24757.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]
          Length = 475

 Score =  511 bits (1317), Expect = e-142
 Identities = 258/471 (54%), Positives = 321/471 (68%)
 Frame = +3

Query: 96   TLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRS 275
            T+  Y +T+F  + E+T+  HPHV+RR+  VTY D FA +++      L E  +RGWSRS
Sbjct: 3    TINNYEYTSFTEDLEETDYTHPHVVRRDPEVTYEDTFAKKELLSRYPALYENLIRGWSRS 62

Query: 276  YYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSY 455
            YY  ++HL AI+Q+  PN   S      Y +A+      L SLP VRA +VL ELD + Y
Sbjct: 63   YYTGQEHLRAIMQYATPNTNFSECVQHAYTKAITKVTESLHSLPTVRAFNVLEELDLIPY 122

Query: 456  KSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRT 635
            +SSS+AGY Y GVKGP+HG NH +AI  AKAVLWS I DDGEGI+HVI+T VPDVGYTRT
Sbjct: 123  ESSSSAGYTYRGVKGPQHGENHMQAIKTAKAVLWSVIKDDGEGIEHVIDTYVPDVGYTRT 182

Query: 636  QLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTV 815
            QL DL EK KVR VWGRAFHYILLEG  A PL++A     TF H G+DPT SVP L+S  
Sbjct: 183  QLTDLREKMKVRGVWGRAFHYILLEGTSAAPLLEAFANSNTFFHIGKDPTVSVPYLIS-- 240

Query: 816  VSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKV 995
             +  +  WL ++DW+ FDA+VS FEINAAFDII+  + FPN ET Q FEI+RQLFIHKK+
Sbjct: 241  YTKGQAPWLTAIDWQAFDATVSRFEINAAFDIIKSKITFPNLETEQAFEISRQLFIHKKL 300

Query: 996  AAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXX 1175
            AAP+G +Y +HKGIPSGSY+TS+IGS++N LRI YLW       P+  +T          
Sbjct: 301  AAPNGKIYRIHKGIPSGSYFTSIIGSVVNRLRIEYLWNLKFNRGPKVCFTQGDDSLIGDD 360

Query: 1176 XXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPE 1355
                P D+A     + W  N  K+  S VPE ITFLGR+SLGGLN+R+L RCLRLL+ PE
Sbjct: 361  ELYSPMDMAAFVKPLNWFINTSKSMTSKVPEAITFLGRSSLGGLNQRDLKRCLRLLILPE 420

Query: 1356 YPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFK 1508
            YPV SG ISA+RA SI  D+G  S IL+ +A  L+R YGIA E +VP Y +
Sbjct: 421  YPVTSGDISAFRANSIWRDSGSTSQILHEIANALRRKYGIAKEQDVPRYLR 471


>gb|AGQ49482.1| RNA-dependent RNA polymerase [Beet cryptic virus 2]
          Length = 475

 Score =  508 bits (1308), Expect = e-141
 Identities = 257/471 (54%), Positives = 320/471 (67%)
 Frame = +3

Query: 96   TLVGYNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRS 275
            T+  Y +T+F  + E+T+  HPHV+RR+  VTY D FA +++      L E  +RGWSRS
Sbjct: 3    TINNYEYTSFTEDLEETDYTHPHVVRRDPEVTYEDTFAKKELLSRYPALYENLIRGWSRS 62

Query: 276  YYLPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSY 455
            YY  ++HL AI+Q+  PN   S      Y +A+      L SLP VRA +VL ELD + Y
Sbjct: 63   YYTGQEHLRAIMQYATPNTNFSECVQHAYTKAITKVTESLHSLPTVRAFNVLEELDLIPY 122

Query: 456  KSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRT 635
            +SSS+AGY Y GVKGP+HG NH +AI  AKAVLWS I DDGEGI+HVI+T VPDVGYTRT
Sbjct: 123  ESSSSAGYTYRGVKGPQHGENHMQAIKTAKAVLWSVIKDDGEGIEHVIDTYVPDVGYTRT 182

Query: 636  QLADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTV 815
            QL DL EK KVR VWGRAFHYILLEG  A PL++A     TF H G+DPT SVP L+S  
Sbjct: 183  QLTDLREKMKVRGVWGRAFHYILLEGTSAAPLLEAFANSNTFFHIGKDPTVSVPYLIS-- 240

Query: 816  VSDPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKV 995
             +  +  WL ++DW+ FDA+VS FEINAAFDII+  + FPN ET Q FEI+RQLFIHKK+
Sbjct: 241  YTKGQAPWLTAIDWQAFDATVSRFEINAAFDIIKSKITFPNLETEQAFEISRQLFIHKKL 300

Query: 996  AAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXX 1175
            AAP+G +Y +HKGIPSGSY+TS+IGS++N LRI Y W       P+  +T          
Sbjct: 301  AAPNGKIYRIHKGIPSGSYFTSIIGSVVNRLRIEYSWNLKFNRGPKVCFTQGDDSLIGDD 360

Query: 1176 XXXRPYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPE 1355
                P D+A     + W  N  K+  S VPE ITFLGR+SLGGLN+R+L RCLRLL+ PE
Sbjct: 361  ELYSPTDMAAFVKPLNWFINTSKSMTSKVPEAITFLGRSSLGGLNQRDLKRCLRLLILPE 420

Query: 1356 YPVESGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFK 1508
            YPV SG ISA+RA SI  D+G  S IL+ +A  L+R YGIA E +VP Y +
Sbjct: 421  YPVTSGDISAFRANSIWRDSGSTSQILHGIANALRRKYGIAKEQDVPRYLR 471


>gb|AAB27624.1| putative RNA-dependent RNA polymerase [Beet cryptic virus 3]
          Length = 478

 Score =  499 bits (1284), Expect = e-138
 Identities = 250/469 (53%), Positives = 318/469 (67%)
 Frame = +3

Query: 108  YNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLP 287
            Y FTNF  E  +    H + I RE+ V   DEFA   + D   +L EQ  +GW+RS+Y  
Sbjct: 9    YEFTNFNEELYQIEGTHTNTIGRESEVILNDEFAKAILIDEFPVLYEQVCQGWARSFYTL 68

Query: 288  EKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSS 467
            E H++AIL +  P+ P    +   + QA    +N L SLP+ RA DV TELD+V Y+ SS
Sbjct: 69   EGHMQAILAYAQPDTPRETFDQTIWDQAYTAVQNELRSLPKARAFDVNTELDKVPYEQSS 128

Query: 468  AAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLAD 647
            +AGY Y   KGP  G  H RAI+R K  L +AI  D EG ++ I  +VPD+GYTRTQLAD
Sbjct: 129  SAGYGYRSHKGPPGGETHMRAISRVKPTLMTAIRPDEEGPEYTILESVPDIGYTRTQLAD 188

Query: 648  LMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDP 827
            L EKTKVR VWGRAFHYIL+EG  A PL++  +   TF+H G DP  SVP +L  +  + 
Sbjct: 189  LREKTKVRGVWGRAFHYILIEGTAARPLLENFMLGTTFMHIGSDPQLSVPRILHQMKREG 248

Query: 828  EVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPD 1007
              KWLY+LDW  FD+SV+ FEIN AF++++E +EFPN ET   FE++R LF HKK+AAPD
Sbjct: 249  S-KWLYALDWSSFDSSVTRFEINCAFNLLKERIEFPNEETELAFELSRILFKHKKLAAPD 307

Query: 1008 GFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXR 1187
            G +Y +HKGIPSGSYYTS++GS++N LRI Y+WR +    P   YT              
Sbjct: 308  GNIYMIHKGIPSGSYYTSIVGSVVNRLRIEYIWRVLFSRSPHRCYTQGDDSLIGETFLVE 367

Query: 1188 PYDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVE 1367
            P  +A EA++ GW  NPDKTEYST P  +TFLGRT+ G +N R+LD+CLRLL++PEYPV 
Sbjct: 368  PETVAREAAKYGWIMNPDKTEYSTDPGYVTFLGRTAHGFMNARSLDKCLRLLMFPEYPVT 427

Query: 1368 SGRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
            SGRISAYRA SIA D GGLS+++N VA RL+R YG+ASE+EVP YFKRY
Sbjct: 428  SGRISAYRAESIARDCGGLSEVINLVARRLRRQYGVASEDEVPHYFKRY 476


>gb|ABC96789.2| RNA-dependent RNA polymerase-like protein [Pepper cryptic virus 1]
          Length = 311

 Score =  429 bits (1102), Expect = e-117
 Identities = 210/313 (67%), Positives = 247/313 (78%)
 Frame = +3

Query: 282  LPEKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKS 461
            +PEKHL A+L + +PN+PAS ++   Y+QA+  AKNG  SLPRV+A DVLTE+DQV +KS
Sbjct: 1    MPEKHLAAVLNYSMPNVPASQLSQSLYRQAIESAKNGFISLPRVKAFDVLTEMDQVPFKS 60

Query: 462  SSAAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQL 641
            SS+AGY+Y G KG     NH RAI+ AKAVLWSAI DDGEGI+HVI T+VPDVGYTRTQL
Sbjct: 61   SSSAGYNYTGRKGLIGDENHSRAISIAKAVLWSAIKDDGEGIEHVIRTSVPDVGYTRTQL 120

Query: 642  ADLMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVS 821
             DL+EKTKVRQVWGRAFHYILLEG+VA P IQ V++H+TFIHAGQDP  SVP LLS V  
Sbjct: 121  TDLLEKTKVRQVWGRAFHYILLEGLVAYPFIQTVMSHKTFIHAGQDPLISVPRLLSDVAL 180

Query: 822  DPEVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAA 1001
            +   KW+YSLDW QFDA+VS FEI+AAFDII+  V+FPNYET Q FEITRQLFIHKKVAA
Sbjct: 181  N--CKWIYSLDWSQFDATVSRFEIHAAFDIIKSYVDFPNYETEQAFEITRQLFIHKKVAA 238

Query: 1002 PDGFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXX 1181
            PDG++Y  HKGIPSGSYYTSL+GSIINYLRINYLWR +TGHPP+  +T            
Sbjct: 239  PDGYIYESHKGIPSGSYYTSLVGSIINYLRINYLWRLLTGHPPQQCHTLGDDSLVGDNSY 298

Query: 1182 XRPYDIAEEASRI 1220
              P  I E A+++
Sbjct: 299  VNPQAIEEAANKL 311


>gb|ABU55400.1| RNA-dependent RNA polymerase [Black raspberry cryptic virus]
          Length = 393

 Score =  415 bits (1067), Expect = e-113
 Identities = 208/385 (54%), Positives = 262/385 (68%)
 Frame = +3

Query: 108  YNFTNFRNEFEKTNQQHPHVIRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLP 287
            ++F +F+ + E   + H   IRRE    Y D+FA  +++    LL EQ+L GWSRS+Y  
Sbjct: 9    HDFIDFQADLEILPENHAQTIRREPNTVYHDDFALRELKSAYPLLYEQYLEGWSRSFYTK 68

Query: 288  EKHLEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSS 467
            E H++AI+Q+  PN+P   +N   Y QA+      L SLP VRA+DVLT+LD VS++ +S
Sbjct: 69   EDHMKAIMQYSYPNIPIEAVNENLYNQAINATLERLRSLPTVRAIDVLTDLDSVSFEPTS 128

Query: 468  AAGYDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLAD 647
            +AGY Y GVKG   G  HK+AI RAKA LWSAI  + EGI HVI T VPDVGYTRTQL  
Sbjct: 129  SAGYGYNGVKGDSLGEIHKQAIRRAKATLWSAIRTEDEGIDHVIRTFVPDVGYTRTQLTQ 188

Query: 648  LMEKTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDP 827
              EKTKVR VWGR FHYILLEG  A PL+ A     TF+H GQDP  SVPNLLS++ +  
Sbjct: 189  HREKTKVRGVWGRCFHYILLEGTAAQPLLDAFKAGTTFLHIGQDPKQSVPNLLSSISN-- 246

Query: 828  EVKWLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPD 1007
              KWL +LDW  FDA+VS FEI+AAFDI+++ V+FPN ET Q FEI+RQLFIHKK+AAPD
Sbjct: 247  HCKWLMALDWSSFDATVSRFEIHAAFDILKQFVQFPNVETEQAFEISRQLFIHKKIAAPD 306

Query: 1008 GFVYSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXR 1187
            G +Y  HKGIPSGSYYTS+IGS++N+LRI Y++RT+TG+ P+  YT              
Sbjct: 307  GKIYWSHKGIPSGSYYTSIIGSVVNHLRIEYIFRTVTGNGPKVCYTQGDDSIIGLDSYID 366

Query: 1188 PYDIAEEASRIGWQFNPDKTEYSTV 1262
            P  ++E A  +GW  NP KTE   V
Sbjct: 367  PSLLSEAAQPLGWVLNPAKTETEAV 391


>gb|ADE34113.1| putative RNA-dependent RNA polymerase [Pittosporum cryptic virus-1]
          Length = 225

 Score =  342 bits (877), Expect = 3e-91
 Identities = 162/217 (74%), Positives = 186/217 (85%)
 Frame = +3

Query: 495  KGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLADLMEKTKVRQ 674
            KG   G NHKRAITRAKAVLWSAIADDGEGI+HVI+T VPDVGYTRTQL DL+EKTKVRQ
Sbjct: 1    KGQYDGENHKRAITRAKAVLWSAIADDGEGIEHVISTFVPDVGYTRTQLTDLLEKTKVRQ 60

Query: 675  VWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLD 854
            VWGR FHYILLEG+VA P I  ++ H TFIHAG+DP +SVP LLS V  +   +WLY+LD
Sbjct: 61   VWGRCFHYILLEGLVASPFINELMKHDTFIHAGKDPIFSVPELLSNVARN--CRWLYALD 118

Query: 855  WKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKG 1034
            WKQFDA+VS FEIN AFDII+  + FPNYET Q FEITRQLFIHKKVAAPDG++Y  HKG
Sbjct: 119  WKQFDATVSRFEINTAFDIIKRKIIFPNYETEQAFEITRQLFIHKKVAAPDGYIYWSHKG 178

Query: 1035 IPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYT 1145
            IPSGSYYTS++GSI+N+L+I+YLWRT+TGHPP+ LYT
Sbjct: 179  IPSGSYYTSVVGSIVNFLKIDYLWRTLTGHPPKDLYT 215


>emb|CDL67777.1| RNA dependent RNA polymerase [Pigeon pea latent virus]
          Length = 475

 Score =  267 bits (682), Expect = 1e-68
 Identities = 162/429 (37%), Positives = 234/429 (54%), Gaps = 1/429 (0%)
 Frame = +3

Query: 195  VDEFAFEQIEDISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNLPASHINIETYQQAM 374
            +DE+A E I     L     L GW+RSYY  E HL AI+ +  P L  S  +   +   M
Sbjct: 31   IDEYASEAINRYVPLHLRAELEGWARSYYTLETHLNAIMNYDRPKL--SQPSDAAWVSTM 88

Query: 375  IDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHKRAITRAKAVL 554
               +     + +V AL     LD+V +  SSAAGY YVG+K      N++RA T A  + 
Sbjct: 89   HHVREQFRQMDKVTALSHY-HLDKVKWVRSSAAGYGYVGLKSDPG--NYERARTTAFTIA 145

Query: 555  WSAIADDGEGIQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAFHYILLEGVVADPLI 734
               +  + +     +  + PDV +TRTQL  +  K KVR VWG AFHY+LLEG+ ADPLI
Sbjct: 146  -ERLNHERDYAPEALKNSTPDVAFTRTQLCQIKIKRKVRNVWGEAFHYVLLEGLFADPLI 204

Query: 735  QAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDASVSIFEINAAFDII 914
            Q  +   +F   GQDP  +VP L+  ++S+ +  ++Y  DW  FD+SV  +EI  AF+++
Sbjct: 205  QHFMKIDSFYFIGQDPLLAVPYLIEDILSESD--YVYMFDWSGFDSSVHEWEIRFAFELL 262

Query: 915  RELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSYYTSLIGSIINYLRI 1094
              L+ FP+      +    +LFI++K+A+P+G +Y   +GIPSGS +T++IGSI NY+RI
Sbjct: 263  ESLLVFPSSVEQHVWRFIIELFIYRKIASPNGVMYLKTQGIPSGSCFTNIIGSITNYVRI 322

Query: 1095 NYLWRTMTGHPPRHLYTXXXXXXXXXXXXXRPYD-IAEEASRIGWQFNPDKTEYSTVPEE 1271
             Y++R +T                       P + IA+  +   W  N DK++ S + E 
Sbjct: 323  QYIFRRLTNRFANVFTHGDDSLAGVSAVQFIPMENIAQVCAEFNWTINVDKSDVSRIAEA 382

Query: 1272 ITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIADDAGGLSDILNRVAF 1451
            +TFL R      + R+   CLR+L YPEYPVESG +S  RA SI+ DAG  S  L ++  
Sbjct: 383  VTFLSRNVREMSHARDELTCLRMLKYPEYPVESGAVSTLRALSISKDAGLNSHYLYKIYK 442

Query: 1452 RLKRTYGIA 1478
             L   YG A
Sbjct: 443  FLDIKYGKA 451


>ref|YP_001686783.1| putative RNA dependent RNA polymerse [Raphanus sativus cryptic virus
            2] gi|77863174|gb|ABB04855.1| putative RNA dependent RNA
            polymerse [Raphanus sativus cryptic virus 2]
          Length = 477

 Score =  251 bits (640), Expect = 8e-64
 Identities = 156/439 (35%), Positives = 229/439 (52%), Gaps = 1/439 (0%)
 Frame = +3

Query: 168  IRRETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNLPASHI 347
            ++R+     +DE+A E +           L+GW+RS Y  ++H++AIL +    LP    
Sbjct: 22   VQRDEFKVIIDEYAAEAVFKFVPSTMLSQLQGWARSVYSLDQHVDAILAYRRQKLPEPTD 81

Query: 348  NIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHKR 527
            ++  + Q            P++  +   +  D+V + SSS+AGY YVG KG   G N+ +
Sbjct: 82   DV--WNQTKQHTLQLFRRFPKITPISYKS-FDEVKWISSSSAGYGYVGHKGD--GDNYLK 136

Query: 528  AITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAFHYILL 707
            A  R    +   +  D       IN + PDV +TRTQL+ +  KTKVR VWG AFHY+LL
Sbjct: 137  A-RRTAVTIAEKLDHDRNYAPEAINQSTPDVAFTRTQLSQVKVKTKVRNVWGEAFHYVLL 195

Query: 708  EGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDASVSIF 887
            EG+ ADPLI       +F   G++P  SVP L+  +    +  ++Y+ DW  FDASV  +
Sbjct: 196  EGLFADPLINFFSNEESFYFIGRNPLLSVPTLIEEIFKSKD--YVYAFDWSGFDASVQEW 253

Query: 888  EINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSYYTSLI 1067
            EI  AF  +   + FP+    Q +    +LFI++K+AAP+G ++    GIPSGS +T++I
Sbjct: 254  EIRFAFQCLESQLIFPSNVEAQIWRFIVELFIYRKIAAPNGTLFLKTLGIPSGSCFTNMI 313

Query: 1068 GSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXRPYD-IAEEASRIGWQFNPDK 1244
            GS++NY+RI Y+++ +T                       P +          W  N  K
Sbjct: 314  GSVVNYVRIQYMFKKLTDDFVEAYTHGDDSLAAVSTAQYIPLEKFGPICEPFMWSINTLK 373

Query: 1245 TEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIADDAGGL 1424
            +E S      TFL R+     N R+   CLR+LVYPEY VE G ISA RA+SI  DAG  
Sbjct: 374  SEVSREGRLTTFLSRSIRDKQNYRDEFVCLRMLVYPEYEVEDGSISALRAKSIYVDAGIH 433

Query: 1425 SDILNRVAFRLKRTYGIAS 1481
            S  L  V   LK+ YG+A+
Sbjct: 434  SQYLYHVFLYLKQKYGLAN 452


>ref|YP_004429258.1| RNA-dependent RNA polymerase [Fig cryptic virus]
            gi|332163669|emb|CBW77436.1| RNA-dependent RNA polymerase
            [Fig cryptic virus]
          Length = 472

 Score =  250 bits (639), Expect = 1e-63
 Identities = 163/456 (35%), Positives = 246/456 (53%), Gaps = 9/456 (1%)
 Frame = +3

Query: 174  RETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNL--PASHI 347
            R+  +  VD+ A++ +   +     Q + GW+RS+Y  E  + +I+QF  P +  P   I
Sbjct: 17   RDEFIILVDQPAYDSVRRNAPQADMQEIDGWARSFYTVEGIMASIMQFSKPLIHEPTDPI 76

Query: 348  NIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHKR 527
              +  ++ ++  K G S  P+V++L      D V ++SSS+AGY Y G KG   G N  R
Sbjct: 77   WNDVKRETLM--KIG-SLFPQVQSLPFEGGFDHVPFESSSSAGYGYDGKKG--EGNNFHR 131

Query: 528  AITRAKAVLWSAIAD-DGEG----IQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAF 692
            A + A A +     D D +G    + H+I    PD+ +TRTQLA L    KVR V+G AF
Sbjct: 132  AKSIANAAVRKFSEDIDNQGYDYAVSHLIQQGTPDIAFTRTQLAKL-PSIKVRIVFGEAF 190

Query: 693  HYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDA 872
            H IL+EG+ A PL++A     TF   G+DPT  VP +L  + ++    W   LDWK FDA
Sbjct: 191  HNILIEGLSAAPLLEAFKRMDTFYFTGKDPTIYVPRILHKMSTNEG--WFICLDWKAFDA 248

Query: 873  SVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSY 1052
            SV ++EI+ AF+ I++L+ FP   +   F  TR+ F  +K+A P+G ++    GIPSGSY
Sbjct: 249  SVQLWEIDHAFNCIQQLLAFPTELSRLAFLFTRESFKQRKLADPNGILWMRKGGIPSGSY 308

Query: 1053 YTSLIGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXRP--YDIAEEASRIGW 1226
            YT++IGS+INY RI Y+ + + G      Y              +P    +     + GW
Sbjct: 309  YTNIIGSVINYNRIEYVCKRL-GLQKTSCYVQGDDSLIHITGDAKPDLTQLQMLGEQFGW 367

Query: 1227 QFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIA 1406
              N  K   +   + +TFLGR+ +  LN R   + LRL+ +PEY VE  +IS  R ++IA
Sbjct: 368  TLNIPKCSLTQDSQLVTFLGRSQMHQLNIRERLKVLRLMCFPEYKVEDPKISTTRVKAIA 427

Query: 1407 DDAGGLSDILNRVAFRLKRTYGIASENEVPPYFKRY 1514
             DAG    + N++  +LKR YG      +PP+   +
Sbjct: 428  RDAGWSDPVYNKIYLQLKRLYG--EVERLPPHLATF 461


>ref|YP_001274391.1| RNA-dependent RNA polymerase [Fragaria chiloensis cryptic virus]
            gi|117912931|gb|AAZ06131.2| RNA-dependent RNA polymerase
            [Fragaria chiloensis cryptic virus]
          Length = 479

 Score =  246 bits (627), Expect = 3e-62
 Identities = 156/436 (35%), Positives = 230/436 (52%), Gaps = 1/436 (0%)
 Frame = +3

Query: 174  RETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNLPASHINI 353
            RE  V ++D ++ + I+ I  L     L GW+RSYY  + H+++I+Q+  P LP      
Sbjct: 24   REERVVHIDAWSSKAIDAIVPLSLRIELDGWARSYYTLQAHIDSIMQYDRPKLPQP--TN 81

Query: 354  ETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHKRAI 533
              +       +   + + +V+ L  L +LDQV +  SSAAGY YVG K      N+ RA 
Sbjct: 82   AAWNTTTQHVRTQFARMDKVQTLSYL-QLDQVKWVRSSAAGYGYVGRKSDND--NYFRAR 138

Query: 534  TRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAFHYILLEG 713
              A  +      D   G    +  + PD+ +TRTQL  +  K K+R VWG AFHY+LLEG
Sbjct: 139  KTAFTIAEKLNHDRDYG-PLALEDSTPDIAFTRTQLCQIKVKRKIRNVWGEAFHYVLLEG 197

Query: 714  VVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDASVSIFEI 893
            + ADP+IQ  I +++F   G+DP  +VP L+  ++S+ +  ++Y  DW  FDASV  +EI
Sbjct: 198  LFADPIIQHFIRNKSFYFIGEDPLLAVPRLVEKILSEQD--YVYMFDWSGFDASVQEWEI 255

Query: 894  NAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSYYTSLIGS 1073
              AF ++  ++ FP+      +    +LFI++K+AAP+G VY    GIPSGS +T++IGS
Sbjct: 256  RFAFSLLESILIFPSSVESYIWHFIIELFIYRKIAAPNGKVYLKTLGIPSGSCFTNIIGS 315

Query: 1074 IINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXRPYDIAEE-ASRIGWQFNPDKTE 1250
            I+NY+RI YL+  +T +                       D  E   +   W  N  K+ 
Sbjct: 316  IVNYVRIQYLFFRLTNNFVTVFTHGDDSLVGVSTTQYVQMDNFEPICAEHNWTINIAKSA 375

Query: 1251 YSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIADDAGGLSD 1430
             S   E ++FL R      + R+   CLR+L +PEY VESG +S  RA SI  DAG  S 
Sbjct: 376  VSHEAEGVSFLSRKVREHCHARDELLCLRMLKFPEYVVESGAMSTLRAHSIHQDAGINSR 435

Query: 1431 ILNRVAFRLKRTYGIA 1478
             L  +   L   YG A
Sbjct: 436  YLYSIYKYLLHRYGKA 451


>gb|ADE76327.1| unknown [Picea sitchensis]
          Length = 413

 Score =  243 bits (619), Expect = 2e-61
 Identities = 150/396 (37%), Positives = 220/396 (55%), Gaps = 2/396 (0%)
 Frame = +3

Query: 297  LEAILQFGLPNLPASHINIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAG 476
            ++AIL++  P   +S    + + +A          L  V+A+    + D V Y  SS+AG
Sbjct: 1    MDAILKYDRPK--SSEPTHQAWNRAKQHVLTEFRRLSEVKAISY-KDFDTVKYLRSSSAG 57

Query: 477  YDYVGVKGPKHGPNHKRAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLADLME 656
            Y YVG+KG     N++RA   A  +      D   G + + ++  PDV +TRTQL+ +  
Sbjct: 58   YGYVGLKGDPG--NYERAKKTAVTIAEKLNHDPAYGPEAIAHST-PDVAFTRTQLSQIKV 114

Query: 657  KTKVRQVWGRAFHYILLEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVK 836
            K KVR VWG AFH++LLEG+ ADPLIQ  +   TF   G+DP  +VP L+  ++S  +  
Sbjct: 115  KRKVRNVWGEAFHHVLLEGLFADPLIQHFMDRTTFYFIGKDPLLAVPALIQEILSYTD-- 172

Query: 837  WLYSLDWKQFDASVSIFEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFV 1016
            ++Y LDW  FD+SV  +EI  AF  + +L+ +P+    Q +   ++LFI++K+A PD  V
Sbjct: 173  YVYQLDWSAFDSSVQEWEIRFAFHCLEQLLVYPSKVEKQIWHFVKELFIYRKIACPDQKV 232

Query: 1017 YSVHKGIPSGSYYTSLIGSIINYLRINYLWRTMTGHPPRHLYT--XXXXXXXXXXXXXRP 1190
                 GIPSGS +T+++GSI+NY+RI +L+  +T H P   YT               + 
Sbjct: 233  RLKTLGIPSGSCFTNIVGSIVNYVRIQFLFLKLT-HRPAVAYTHGDDSLAGVDATQYIQL 291

Query: 1191 YDIAEEASRIGWQFNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVES 1370
              +  E  +  WQ N  K+  STV E+  FL RT   G N R+   CLR+L YPEYPV  
Sbjct: 292  SILQAECDQYNWQLNGLKSLISTVAEQTVFLSRTVKEGQNFRDTLTCLRMLKYPEYPVPC 351

Query: 1371 GRISAYRARSIADDAGGLSDILNRVAFRLKRTYGIA 1478
            G IS  RA SIA D+G  S +L ++   L+  YG+A
Sbjct: 352  GSISTLRAFSIAKDSGLSSALLTQIYQYLESKYGMA 387


>gb|ABV89762.1| putative RNA-dependent RNA polymerase [Rosa multiflora cryptic virus]
          Length = 479

 Score =  239 bits (609), Expect = 3e-60
 Identities = 156/443 (35%), Positives = 237/443 (53%), Gaps = 8/443 (1%)
 Frame = +3

Query: 174  RETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNL-PASHI- 347
            RE  V ++D ++ + I+ I  L     L GW+RSYY  + H+++++Q+  P L P ++  
Sbjct: 24   REECVIHIDAWSSQAIDAIVPLSLRNELDGWARSYYTLQAHVDSLMQYDRPKLQPPTNTA 83

Query: 348  -NIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHK 524
             NI T        +   + + +V AL  L +LDQV +  SSAAGY Y G K    G N+ 
Sbjct: 84   WNITTQY-----IRTEFARMKKVTALSYL-QLDQVKWVRSSAAGYGYTGRKSD--GDNYI 135

Query: 525  RAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAFHYIL 704
            RA  +    L   +  + +     +  + PDV +TRTQL  +  K K+R VWG AFHY+L
Sbjct: 136  RA-RKTAFTLAEKLNHNRDYGPLALEDSTPDVAFTRTQLCQIKVKRKIRNVWGEAFHYVL 194

Query: 705  LEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDASVSI 884
            LEG+ ADPLIQ  +  ++F   G+DP  +VP L+  ++S+ +  ++Y  DW  FDASV  
Sbjct: 195  LEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLIEEILSEQD--YIYMFDWSGFDASVQE 252

Query: 885  FEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSYYTSL 1064
            +E+  AF ++  ++ FP+    Q ++   +LFI++K+AAP+G +Y    GIPSGS +T++
Sbjct: 253  WELRFAFGLLESILIFPSSVEHQVWQFIIELFIYRKIAAPNGKIYLKTLGIPSGSCFTNI 312

Query: 1065 IGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXRPYDIAEE-----ASRIGWQ 1229
            IGSI+NY+RI Y++  +T    R   T                 +  E          W 
Sbjct: 313  IGSIVNYVRIQYMFFRLT----REFVTAFTHGDDSLVGVPTTQYVQMENFKPICDENLWT 368

Query: 1230 FNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIAD 1409
             N  K+  S   E ++FL R      + R+   CLR+L +PEY VE+G +S  RA SI  
Sbjct: 369  INIAKSAISREAEGVSFLSRKVREMCHARDELICLRMLKFPEYIVETGAMSTLRAFSIHK 428

Query: 1410 DAGGLSDILNRVAFRLKRTYGIA 1478
            DAG  S  L ++   L   YG A
Sbjct: 429  DAGINSRYLYQIYKFLLHRYGKA 451


>ref|YP_001686786.1| RNA-dependent RNA polymerase [Rose cryptic virus 1]
            gi|167077473|gb|ABZ10945.1| RNA-dependent RNA polymerase
            [Rose cryptic virus 1]
          Length = 479

 Score =  239 bits (609), Expect = 3e-60
 Identities = 156/443 (35%), Positives = 237/443 (53%), Gaps = 8/443 (1%)
 Frame = +3

Query: 174  RETAVTYVDEFAFEQIEDISKLLPEQFLRGWSRSYYLPEKHLEAILQFGLPNL-PASHI- 347
            RE  V ++D ++ + I+ I  L     L GW+RSYY  + H+++++Q+  P L P ++  
Sbjct: 24   REECVIHIDAWSSQAIDAIVPLSLRNELDGWARSYYTLQAHVDSLMQYDRPKLQPPTNTA 83

Query: 348  -NIETYQQAMIDAKNGLSSLPRVRALDVLTELDQVSYKSSSAAGYDYVGVKGPKHGPNHK 524
             NI T        +   + + +V AL  L +LDQV +  SSAAGY Y G K    G N+ 
Sbjct: 84   WNITTQY-----IRTEFARMKKVTALSYL-QLDQVKWVRSSAAGYGYTGRKSD--GDNYI 135

Query: 525  RAITRAKAVLWSAIADDGEGIQHVINTAVPDVGYTRTQLADLMEKTKVRQVWGRAFHYIL 704
            RA  +    L   +  + +     +  + PDV +TRTQL  +  K K+R VWG AFHY+L
Sbjct: 136  RA-RKTAFTLAEKLNHNRDYGPLALEDSTPDVAFTRTQLCQIKVKRKIRNVWGEAFHYVL 194

Query: 705  LEGVVADPLIQAVITHRTFIHAGQDPTYSVPNLLSTVVSDPEVKWLYSLDWKQFDASVSI 884
            LEG+ ADPLIQ  +  ++F   G+DP  +VP L+  ++S+ +  ++Y  DW  FDASV  
Sbjct: 195  LEGLFADPLIQQFMRIKSFYFIGEDPLLAVPRLIEEILSEQD--YIYMFDWSGFDASVQE 252

Query: 885  FEINAAFDIIRELVEFPNYETLQCFEITRQLFIHKKVAAPDGFVYSVHKGIPSGSYYTSL 1064
            +E+  AF ++  ++ FP+    Q ++   +LFI++K+AAP+G +Y    GIPSGS +T++
Sbjct: 253  WELRFAFGLLESILIFPSSVEHQVWQFIIELFIYRKIAAPNGKIYLKTLGIPSGSCFTNI 312

Query: 1065 IGSIINYLRINYLWRTMTGHPPRHLYTXXXXXXXXXXXXXRPYDIAEE-----ASRIGWQ 1229
            IGSI+NY+RI Y++  +T    R   T                 +  E          W 
Sbjct: 313  IGSIVNYVRIQYMFFRLT----REFVTAFTHGDDSLVGVPTTQYVQMENFKPICDENLWT 368

Query: 1230 FNPDKTEYSTVPEEITFLGRTSLGGLNKRNLDRCLRLLVYPEYPVESGRISAYRARSIAD 1409
             N  K+  S   E ++FL R      + R+   CLR+L +PEY VE+G +S  RA SI  
Sbjct: 369  INIAKSAISREAEGVSFLSRKVREMCHARDELICLRMLKFPEYIVETGAMSTLRAFSIHK 428

Query: 1410 DAGGLSDILNRVAFRLKRTYGIA 1478
            DAG  S  L ++   L   YG A
Sbjct: 429  DAGIHSRYLYQIYKFLLHRYGKA 451