BLASTX nr result
ID: Atropa21_contig00006411
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00006411
(1220 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA88921.1| sigma factor [Nicotiana tabacum] 396 e-116
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-... 392 e-115
dbj|BAA88922.1| sigma factor [Nicotiana tabacum] 365 e-106
ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-... 367 e-106
ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-... 365 e-105
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei... 365 e-104
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr... 361 e-103
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao] 359 e-102
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-... 362 e-102
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr... 361 e-102
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 358 e-102
emb|CBI26421.3| unnamed protein product [Vitis vinifera] 367 e-101
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik... 367 e-101
emb|CAA75859.1| Sig1 [Sinapis alba] 356 e-101
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-... 360 e-101
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe... 353 e-101
ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ... 353 e-101
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps... 353 e-101
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha... 350 e-100
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali... 350 e-100
>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 396 bits (1017), Expect(3) = e-116
Identities = 201/225 (89%), Positives = 210/225 (93%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LK+S TDLQSTL+E SLARERLAM NVRLVMSIAQRYDN+GAEMADLVQGGLIGLL
Sbjct: 244 LAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLL 303
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFDPSKGYKISTYVYWWI QGVS ALVENSRTLRLPT+LHERLSLI NAK RLE K
Sbjct: 304 RGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEK 363
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPSVN IAASLNMSQKKVRNATEASSK+YSLDREAFPSLNGLPGETLHSYIADN E+
Sbjct: 364 GITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLEN 423
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHGVDVWALKDEVNNLISSTL +REREI+RLYYGLDNECLTWE
Sbjct: 424 NPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWE 468
Score = 38.5 bits (88), Expect(3) = e-116
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL+ERLGCEPSDDQLA+S +
Sbjct: 230 RLKERLGCEPSDDQLAVSLK 249
Score = 34.7 bits (78), Expect(3) = e-116
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIKQ 403
KLKHAARKR LDAMLIKQ
Sbjct: 491 KLKHAARKRQLDAMLIKQ 508
>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
lycopersicum]
Length = 509
Score = 392 bits (1008), Expect(3) = e-115
Identities = 199/225 (88%), Positives = 206/225 (91%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LK+S TDLQSTL+E SLARERL+M NVRLVMSIAQRYDNMGAEMADLVQGGLIGLL
Sbjct: 245 LAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 304
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFDPSKGYKISTYVYWWI QGVS LVENSRTLRLPTHLHERL LI NAKMRLE K
Sbjct: 305 RGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMRLEEK 364
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+ PSVN IAASLNMSQKKVRNATEASSKVYSLDRE FPSLNGLPG TLHSYIADN E+
Sbjct: 365 GINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADNHLEN 424
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHGVDVWALKDEVNNLISSTL EREREI+RLYYGLD+ECLTWE
Sbjct: 425 NPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWE 469
Score = 38.5 bits (88), Expect(3) = e-115
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL+ERLGCEPSDDQLA+S +
Sbjct: 231 RLKERLGCEPSDDQLAVSLK 250
Score = 34.7 bits (78), Expect(3) = e-115
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIKQ 403
KLKHAARKR LDAMLIKQ
Sbjct: 492 KLKHAARKRRLDAMLIKQ 509
>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 365 bits (936), Expect(3) = e-106
Identities = 185/225 (82%), Positives = 198/225 (88%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS DL+STL+E SLARE+LAM NVRLVMSIAQRYD G EMADL+QGGLIGLL
Sbjct: 238 LAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLL 297
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD S+G+KISTYVYWWI QGVS ALVENSRTLRLP HLHERLSLI NAK++L+
Sbjct: 298 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKEN 357
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS+ IA LNMSQKKVRNATEASSKV+SLDREAFPSLNGLPGETLHSYIADN E+
Sbjct: 358 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLEN 417
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
PWHGVD W LKDEVNNLISSTL EREREIVRLYYGLDNECLTWE
Sbjct: 418 IPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWE 462
Score = 38.9 bits (89), Expect(3) = e-106
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL+ERLGCEPSDDQLAIS +
Sbjct: 224 RLKERLGCEPSDDQLAISLK 243
Score = 32.3 bits (72), Expect(3) = e-106
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR LDAML+K
Sbjct: 485 KLKHAARKRRLDAMLVK 501
>ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Solanum
tuberosum] gi|565361192|ref|XP_006347342.1| PREDICTED:
RNA polymerase sigma factor sigA-like isoform X2 [Solanum
tuberosum]
Length = 505
Score = 367 bits (943), Expect(3) = e-106
Identities = 184/225 (81%), Positives = 201/225 (89%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LK+S DL+STLME SLARE+LAM NVRLVMSIAQRYD+MG EMADL+QGGLIGLL
Sbjct: 241 LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL 300
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD S+G+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERLSLI NAK++L+
Sbjct: 301 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDN 360
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS+ IA LNMSQKKVRNATEASSKV+SLDREA+PSLNGLPG TLHSYIADN E+
Sbjct: 361 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN 420
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHGVD WALKDEVNNLISSTL ERER+IVRLYYGLDNECLTWE
Sbjct: 421 NPWHGVDGWALKDEVNNLISSTLRERERDIVRLYYGLDNECLTWE 465
Score = 36.6 bits (83), Expect(3) = e-106
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = -1
Query: 1217 LEERLGCEPSDDQLAISFE 1161
L+ERLGCEPSDDQLA+S +
Sbjct: 228 LKERLGCEPSDDQLAVSLK 246
Score = 31.2 bits (69), Expect(3) = e-106
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARK+ LDAML+K
Sbjct: 488 KLKHAARKKQLDAMLVK 504
>ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
lycopersicum]
Length = 505
Score = 365 bits (936), Expect(3) = e-105
Identities = 182/225 (80%), Positives = 200/225 (88%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LK+S DL+STLME SLARE+LAM NVRLVMSIAQRYD+MG EMADL+QGGLIGLL
Sbjct: 241 LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL 300
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD S+G+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERLSLI NAK++L+
Sbjct: 301 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDS 360
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS+ IA LNMSQKKVRNATEASSKV+SLDREA+PSLNGLPG TLHSYIADN E+
Sbjct: 361 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN 420
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHGVD WALKDEVNNLISS L ERER+I+RLYYGLDNECLTWE
Sbjct: 421 NPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWE 465
Score = 36.6 bits (83), Expect(3) = e-105
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = -1
Query: 1217 LEERLGCEPSDDQLAISFE 1161
L+ERLGCEPSDDQLA+S +
Sbjct: 228 LKERLGCEPSDDQLAVSLK 246
Score = 31.2 bits (69), Expect(3) = e-105
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARK+ LDAML+K
Sbjct: 488 KLKHAARKKQLDAMLVK 504
>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
1 family protein [Populus trichocarpa]
Length = 509
Score = 365 bits (938), Expect(3) = e-104
Identities = 182/221 (82%), Positives = 199/221 (90%)
Frame = -2
Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
L+IS DLQS L++ SLARE+LAM NVRLVMSIAQ+YDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 249 LRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIE 308
Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
KFD SKG+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERL LI NAK+RLE KGVTP
Sbjct: 309 KFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 368
Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
S++ IA SLNMSQ+KVRNATEA SKV+SLDREAFPSLNGLPGET HSYIADN PE+NPWH
Sbjct: 369 SIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNPWH 428
Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
GVD WALK+EVN LI STL ERE+EI+RLY+GLD ECLTWE
Sbjct: 429 GVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWE 469
Score = 33.5 bits (75), Expect(3) = e-104
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAIS 1167
RL+ERLGCEPSD+Q+A S
Sbjct: 231 RLKERLGCEPSDEQIADS 248
Score = 28.9 bits (63), Expect(3) = e-104
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR +AML+K
Sbjct: 492 KLKHAARKRNTEAMLVK 508
>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
gi|557097090|gb|ESQ37598.1| hypothetical protein
EUTSA_v10002486mg [Eutrema salsugineum]
Length = 519
Score = 361 bits (926), Expect(3) = e-103
Identities = 180/225 (80%), Positives = 199/225 (88%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDNMGAEM+DLVQGGLIGLL
Sbjct: 255 LAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLL 314
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 315 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 374
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+
Sbjct: 375 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 434
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D WALKDEV+ LIS+TL EREREI+RLYYGLD ECLTWE
Sbjct: 435 NPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWE 479
Score = 36.2 bits (82), Expect(3) = e-103
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL++RLGCEPSD+QLAIS +
Sbjct: 241 RLKDRLGCEPSDEQLAISLK 260
Score = 28.9 bits (63), Expect(3) = e-103
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AM++K
Sbjct: 502 KLKHAARKRKMEAMILK 518
>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
Length = 508
Score = 359 bits (921), Expect(3) = e-102
Identities = 181/221 (81%), Positives = 197/221 (89%)
Frame = -2
Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
LKIS +L+S L+E SLARE+LAM NVRLVMSIAQRYDNMGAEM+DL+QGGLIGLLRGIE
Sbjct: 248 LKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLIGLLRGIE 307
Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
KFD SKGYKISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK+RLE KG+TP
Sbjct: 308 KFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITP 367
Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
+++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIADN E+ PWH
Sbjct: 368 TIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADNHVENIPWH 427
Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
GVD WALKDEVN LI+ TL EREREI+RLYYGLD E LTWE
Sbjct: 428 GVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWE 468
Score = 35.4 bits (80), Expect(3) = e-102
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL+ERLGCEPSD+QLA S +
Sbjct: 230 RLKERLGCEPSDEQLATSLK 249
Score = 28.9 bits (63), Expect(3) = e-102
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARK+ ++AML+K
Sbjct: 491 KLKHAARKKKMEAMLVK 507
>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
polymerase sigma factor sigA-like isoform X2 [Citrus
sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
polymerase sigma factor sigA-like isoform X3 [Citrus
sinensis]
Length = 508
Score = 362 bits (930), Expect(3) = e-102
Identities = 186/228 (81%), Positives = 196/228 (85%)
Frame = -2
Query: 1186 MINLLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLI 1007
M L L+IS +LQS LME SLARE+L M NVRLVMSIAQRYDNMGA+MADLVQGGLI
Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
Query: 1006 GLLRGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRL 827
GLLRGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RL
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
Query: 826 EVKGVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNL 647
E KGVTPSV+ IA LNMSQKKVRNATEA KV+SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420
Query: 646 PESNPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
E+NPWHGVD WALKDEVN LI TL EREREI+RLYYGLD ECLTWE
Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWE 468
Score = 31.6 bits (70), Expect(3) = e-102
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAIS 1167
RL+ERLGCEPS +QLA S
Sbjct: 230 RLKERLGCEPSMEQLAAS 247
Score = 28.9 bits (63), Expect(3) = e-102
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARK+ ++AML+K
Sbjct: 491 KLKHAARKKKMEAMLVK 507
>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
gi|557539599|gb|ESR50643.1| hypothetical protein
CICLE_v10031289mg [Citrus clementina]
Length = 508
Score = 361 bits (926), Expect(3) = e-102
Identities = 184/228 (80%), Positives = 196/228 (85%)
Frame = -2
Query: 1186 MINLLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLI 1007
M L L+IS +LQS LME SLARE+L M NVRLVMSIAQRYDNMGA+MADL+QGGLI
Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300
Query: 1006 GLLRGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRL 827
GLLRGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RL
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
Query: 826 EVKGVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNL 647
E KGVTP+V+ IA LNMSQKKVRNATEA KV+SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420
Query: 646 PESNPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
E+NPWHGVD WALKDEVN LI TL EREREI+RLYYGLD ECLTWE
Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWE 468
Score = 31.6 bits (70), Expect(3) = e-102
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAIS 1167
RL+ERLGCEPS +QLA S
Sbjct: 230 RLKERLGCEPSMEQLAAS 247
Score = 28.9 bits (63), Expect(3) = e-102
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARK+ ++AML+K
Sbjct: 491 KLKHAARKKKMEAMLVK 507
>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 508
Score = 358 bits (919), Expect(3) = e-102
Identities = 182/221 (82%), Positives = 196/221 (88%)
Frame = -2
Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
LKIS +LQS + SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 248 LKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 307
Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
KFD SKG++ISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RLE KGVTP
Sbjct: 308 KFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 367
Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
S++ IA SLN+SQKKVRNATEA SKV+SLDREAFPSLNGLPGET HSYIADN E+NPWH
Sbjct: 368 SIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWH 427
Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
GVD WALKDEVN LI+ TL ERE+EI+RLYYGLDNE LTWE
Sbjct: 428 GVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWE 468
Score = 33.1 bits (74), Expect(3) = e-102
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL+ERLGC+PSD+Q+A S +
Sbjct: 230 RLKERLGCDPSDEQVATSLK 249
Score = 29.6 bits (65), Expect(3) = e-102
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARK+ L+AML+K
Sbjct: 491 KLKHAARKKKLEAMLVK 507
>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 367 bits (943), Expect(3) = e-101
Identities = 184/221 (83%), Positives = 201/221 (90%)
Frame = -2
Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
L++S +LQS L+E SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 295 LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 354
Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP+HLHERLSLI NAK+RLE KG+TP
Sbjct: 355 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 414
Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
S++ IA LNMSQKKVRNATEA SKV+SLDREAFPSLNGLPGETLHSYIAD E+NPWH
Sbjct: 415 SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 474
Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
GVD WALKDEVN LI++TL ERER+I+RLYYGLDNECLTWE
Sbjct: 475 GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWE 515
Score = 28.1 bits (61), Expect(3) = e-101
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAIS 1167
RL+ER+G EP+D+Q+A S
Sbjct: 277 RLKERIGSEPTDEQVAAS 294
Score = 24.6 bits (52), Expect(3) = e-101
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLK+AARK ++AML+K
Sbjct: 538 KLKNAARKGRMEAMLVK 554
>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 367 bits (943), Expect(3) = e-101
Identities = 184/221 (83%), Positives = 201/221 (90%)
Frame = -2
Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
L++S +LQS L+E SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 237 LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 296
Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP+HLHERLSLI NAK+RLE KG+TP
Sbjct: 297 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 356
Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
S++ IA LNMSQKKVRNATEA SKV+SLDREAFPSLNGLPGETLHSYIAD E+NPWH
Sbjct: 357 SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 416
Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
GVD WALKDEVN LI++TL ERER+I+RLYYGLDNECLTWE
Sbjct: 417 GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWE 457
Score = 28.1 bits (61), Expect(3) = e-101
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAIS 1167
RL+ER+G EP+D+Q+A S
Sbjct: 219 RLKERIGSEPTDEQVAAS 236
Score = 24.6 bits (52), Expect(3) = e-101
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLK+AARK ++AML+K
Sbjct: 480 KLKNAARKGRMEAMLVK 496
>emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 356 bits (914), Expect(3) = e-101
Identities = 179/225 (79%), Positives = 197/225 (87%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDNMGAEM+DLVQGGLIGLL
Sbjct: 217 LAMSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLL 276
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 277 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 336
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+
Sbjct: 337 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 396
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D ALKDEV+ LIS TL EREREI+RLYYGLD ECLTWE
Sbjct: 397 NPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLDKECLTWE 441
Score = 34.3 bits (77), Expect(3) = e-101
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL +RLGCEPSD+QLA+S +
Sbjct: 203 RLTDRLGCEPSDEQLAMSLK 222
Score = 28.9 bits (63), Expect(3) = e-101
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AM++K
Sbjct: 464 KLKHAARKRKMEAMILK 480
>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 360 bits (923), Expect(3) = e-101
Identities = 180/225 (80%), Positives = 199/225 (88%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +L+S +MESSLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLL
Sbjct: 244 LAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 303
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK++L+ K
Sbjct: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEK 363
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMS+KKV+NATEA SKV+SLDREAFPSLNGLPGET HSYIADN E+
Sbjct: 364 GITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLEN 423
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D W LK EVN LI+ TL +REREI+RLY+GLDNECLTWE
Sbjct: 424 NPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWE 468
Score = 36.2 bits (82), Expect(3) = e-101
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL++RLGCEPS+DQLAIS +
Sbjct: 230 RLKQRLGCEPSEDQLAISLK 249
Score = 22.7 bits (47), Expect(3) = e-101
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLK AA+ R ++AML+K
Sbjct: 491 KLKKAAKTRKMEAMLLK 507
>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
Length = 512
Score = 353 bits (907), Expect(3) = e-101
Identities = 176/221 (79%), Positives = 196/221 (88%)
Frame = -2
Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
L+IS LQS L+E LARE+LAM NVRLVMSIAQRYDNMGAEMADL+QGGLIGLLRGIE
Sbjct: 252 LRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQGGLIGLLRGIE 311
Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK+RLE KG+TP
Sbjct: 312 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITP 371
Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
S++ IA SLNMS+KKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIADN E+ PWH
Sbjct: 372 SIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIADNRLENIPWH 431
Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
GVD WALK+EV+ LI+ L ERE+EI++LYYGL+NECLTWE
Sbjct: 432 GVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWE 472
Score = 35.0 bits (79), Expect(3) = e-101
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAIS 1167
RL+ERLGCEPSD+QLA S
Sbjct: 234 RLKERLGCEPSDEQLATS 251
Score = 29.6 bits (65), Expect(3) = e-101
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AML+K
Sbjct: 495 KLKHAARKREMEAMLLK 511
>ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit
1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 353 bits (907), Expect(3) = e-101
Identities = 177/225 (78%), Positives = 198/225 (88%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 239 LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 298
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 299 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 358
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+
Sbjct: 359 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRVEN 418
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D ALK+EV+ LIS+TL EREREI+RLYYGLD ECLTWE
Sbjct: 419 NPWHGYDDLALKEEVSKLISATLGEREREIIRLYYGLDKECLTWE 463
Score = 35.8 bits (81), Expect(3) = e-101
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL++RLGCEPSD+QLA+S +
Sbjct: 225 RLKDRLGCEPSDEQLAVSLK 244
Score = 28.9 bits (63), Expect(3) = e-101
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AM++K
Sbjct: 486 KLKHAARKRKMEAMILK 502
>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
gi|482570853|gb|EOA35041.1| hypothetical protein
CARUB_v10020145mg [Capsella rubella]
Length = 521
Score = 353 bits (905), Expect(3) = e-101
Identities = 176/225 (78%), Positives = 198/225 (88%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 257 LAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 316
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 317 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 376
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+
Sbjct: 377 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 436
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D ALK+EV+ LI++TL EREREI+RLYYGLD ECLTWE
Sbjct: 437 NPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLDKECLTWE 481
Score = 36.2 bits (82), Expect(3) = e-101
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL++RLGCEPSD+QLAIS +
Sbjct: 243 RLKDRLGCEPSDEQLAISLK 262
Score = 28.9 bits (63), Expect(3) = e-101
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AM++K
Sbjct: 504 KLKHAARKRKMEAMILK 520
>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
polymerase sigma factor sigA; Short=Sigma factor A;
Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
[Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
1 [Arabidopsis thaliana]
Length = 502
Score = 350 bits (898), Expect(3) = e-100
Identities = 176/225 (78%), Positives = 197/225 (87%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 238 LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 297
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 298 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 357
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIAD E+
Sbjct: 358 GITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN 417
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D ALK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWE
Sbjct: 418 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWE 462
Score = 35.8 bits (81), Expect(3) = e-100
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL++RLGCEPSD+QLA+S +
Sbjct: 224 RLKDRLGCEPSDEQLAVSLK 243
Score = 28.9 bits (63), Expect(3) = e-100
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AM++K
Sbjct: 485 KLKHAARKRKMEAMILK 501
>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 350 bits (898), Expect(3) = e-100
Identities = 176/225 (78%), Positives = 197/225 (87%)
Frame = -2
Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 238 LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 297
Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 298 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 357
Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
G+TPS++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIAD E+
Sbjct: 358 GITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN 417
Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
NPWHG D ALK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWE
Sbjct: 418 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWE 462
Score = 35.8 bits (81), Expect(3) = e-100
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -1
Query: 1220 RLEERLGCEPSDDQLAISFE 1161
RL++RLGCEPSD+QLA+S +
Sbjct: 224 RLKDRLGCEPSDEQLAVSLK 243
Score = 28.9 bits (63), Expect(3) = e-100
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 456 KLKHAARKR*LDAMLIK 406
KLKHAARKR ++AM++K
Sbjct: 485 KLKHAARKRKMEAMILK 501