BLASTX nr result
ID: Atropa21_contig00006411
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00006411 (1220 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA88921.1| sigma factor [Nicotiana tabacum] 396 e-116 ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-... 392 e-115 dbj|BAA88922.1| sigma factor [Nicotiana tabacum] 365 e-106 ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-... 367 e-106 ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-... 365 e-105 ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei... 365 e-104 ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr... 361 e-103 gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao] 359 e-102 ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-... 362 e-102 ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr... 361 e-102 ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 358 e-102 emb|CBI26421.3| unnamed protein product [Vitis vinifera] 367 e-101 ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik... 367 e-101 emb|CAA75859.1| Sig1 [Sinapis alba] 356 e-101 ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-... 360 e-101 gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe... 353 e-101 ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ... 353 e-101 ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps... 353 e-101 ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha... 350 e-100 gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali... 350 e-100 >dbj|BAA88921.1| sigma factor [Nicotiana tabacum] Length = 508 Score = 396 bits (1017), Expect(3) = e-116 Identities = 201/225 (89%), Positives = 210/225 (93%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LK+S TDLQSTL+E SLARERLAM NVRLVMSIAQRYDN+GAEMADLVQGGLIGLL Sbjct: 244 LAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLL 303 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFDPSKGYKISTYVYWWI QGVS ALVENSRTLRLPT+LHERLSLI NAK RLE K Sbjct: 304 RGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEK 363 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPSVN IAASLNMSQKKVRNATEASSK+YSLDREAFPSLNGLPGETLHSYIADN E+ Sbjct: 364 GITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLEN 423 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHGVDVWALKDEVNNLISSTL +REREI+RLYYGLDNECLTWE Sbjct: 424 NPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWE 468 Score = 38.5 bits (88), Expect(3) = e-116 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL+ERLGCEPSDDQLA+S + Sbjct: 230 RLKERLGCEPSDDQLAVSLK 249 Score = 34.7 bits (78), Expect(3) = e-116 Identities = 17/18 (94%), Positives = 17/18 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIKQ 403 KLKHAARKR LDAMLIKQ Sbjct: 491 KLKHAARKRQLDAMLIKQ 508 >ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum lycopersicum] Length = 509 Score = 392 bits (1008), Expect(3) = e-115 Identities = 199/225 (88%), Positives = 206/225 (91%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LK+S TDLQSTL+E SLARERL+M NVRLVMSIAQRYDNMGAEMADLVQGGLIGLL Sbjct: 245 LAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 304 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFDPSKGYKISTYVYWWI QGVS LVENSRTLRLPTHLHERL LI NAKMRLE K Sbjct: 305 RGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMRLEEK 364 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+ PSVN IAASLNMSQKKVRNATEASSKVYSLDRE FPSLNGLPG TLHSYIADN E+ Sbjct: 365 GINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADNHLEN 424 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHGVDVWALKDEVNNLISSTL EREREI+RLYYGLD+ECLTWE Sbjct: 425 NPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWE 469 Score = 38.5 bits (88), Expect(3) = e-115 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL+ERLGCEPSDDQLA+S + Sbjct: 231 RLKERLGCEPSDDQLAVSLK 250 Score = 34.7 bits (78), Expect(3) = e-115 Identities = 17/18 (94%), Positives = 17/18 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIKQ 403 KLKHAARKR LDAMLIKQ Sbjct: 492 KLKHAARKRRLDAMLIKQ 509 >dbj|BAA88922.1| sigma factor [Nicotiana tabacum] Length = 502 Score = 365 bits (936), Expect(3) = e-106 Identities = 185/225 (82%), Positives = 198/225 (88%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS DL+STL+E SLARE+LAM NVRLVMSIAQRYD G EMADL+QGGLIGLL Sbjct: 238 LAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLL 297 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD S+G+KISTYVYWWI QGVS ALVENSRTLRLP HLHERLSLI NAK++L+ Sbjct: 298 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKEN 357 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS+ IA LNMSQKKVRNATEASSKV+SLDREAFPSLNGLPGETLHSYIADN E+ Sbjct: 358 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLEN 417 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 PWHGVD W LKDEVNNLISSTL EREREIVRLYYGLDNECLTWE Sbjct: 418 IPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWE 462 Score = 38.9 bits (89), Expect(3) = e-106 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL+ERLGCEPSDDQLAIS + Sbjct: 224 RLKERLGCEPSDDQLAISLK 243 Score = 32.3 bits (72), Expect(3) = e-106 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR LDAML+K Sbjct: 485 KLKHAARKRRLDAMLVK 501 >ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Solanum tuberosum] gi|565361192|ref|XP_006347342.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2 [Solanum tuberosum] Length = 505 Score = 367 bits (943), Expect(3) = e-106 Identities = 184/225 (81%), Positives = 201/225 (89%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LK+S DL+STLME SLARE+LAM NVRLVMSIAQRYD+MG EMADL+QGGLIGLL Sbjct: 241 LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL 300 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD S+G+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERLSLI NAK++L+ Sbjct: 301 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDN 360 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS+ IA LNMSQKKVRNATEASSKV+SLDREA+PSLNGLPG TLHSYIADN E+ Sbjct: 361 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN 420 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHGVD WALKDEVNNLISSTL ERER+IVRLYYGLDNECLTWE Sbjct: 421 NPWHGVDGWALKDEVNNLISSTLRERERDIVRLYYGLDNECLTWE 465 Score = 36.6 bits (83), Expect(3) = e-106 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 1217 LEERLGCEPSDDQLAISFE 1161 L+ERLGCEPSDDQLA+S + Sbjct: 228 LKERLGCEPSDDQLAVSLK 246 Score = 31.2 bits (69), Expect(3) = e-106 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARK+ LDAML+K Sbjct: 488 KLKHAARKKQLDAMLVK 504 >ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum lycopersicum] Length = 505 Score = 365 bits (936), Expect(3) = e-105 Identities = 182/225 (80%), Positives = 200/225 (88%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LK+S DL+STLME SLARE+LAM NVRLVMSIAQRYD+MG EMADL+QGGLIGLL Sbjct: 241 LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL 300 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD S+G+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERLSLI NAK++L+ Sbjct: 301 RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDS 360 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS+ IA LNMSQKKVRNATEASSKV+SLDREA+PSLNGLPG TLHSYIADN E+ Sbjct: 361 GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN 420 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHGVD WALKDEVNNLISS L ERER+I+RLYYGLDNECLTWE Sbjct: 421 NPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWE 465 Score = 36.6 bits (83), Expect(3) = e-105 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 1217 LEERLGCEPSDDQLAISFE 1161 L+ERLGCEPSDDQLA+S + Sbjct: 228 LKERLGCEPSDDQLAVSLK 246 Score = 31.2 bits (69), Expect(3) = e-105 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARK+ LDAML+K Sbjct: 488 KLKHAARKKQLDAMLVK 504 >ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa] Length = 509 Score = 365 bits (938), Expect(3) = e-104 Identities = 182/221 (82%), Positives = 199/221 (90%) Frame = -2 Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986 L+IS DLQS L++ SLARE+LAM NVRLVMSIAQ+YDNMGAEMADLVQGGLIGLLRGIE Sbjct: 249 LRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIE 308 Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806 KFD SKG+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERL LI NAK+RLE KGVTP Sbjct: 309 KFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 368 Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626 S++ IA SLNMSQ+KVRNATEA SKV+SLDREAFPSLNGLPGET HSYIADN PE+NPWH Sbjct: 369 SIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNPWH 428 Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 GVD WALK+EVN LI STL ERE+EI+RLY+GLD ECLTWE Sbjct: 429 GVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWE 469 Score = 33.5 bits (75), Expect(3) = e-104 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAIS 1167 RL+ERLGCEPSD+Q+A S Sbjct: 231 RLKERLGCEPSDEQIADS 248 Score = 28.9 bits (63), Expect(3) = e-104 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR +AML+K Sbjct: 492 KLKHAARKRNTEAMLVK 508 >ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum] gi|557097090|gb|ESQ37598.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum] Length = 519 Score = 361 bits (926), Expect(3) = e-103 Identities = 180/225 (80%), Positives = 199/225 (88%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDNMGAEM+DLVQGGLIGLL Sbjct: 255 LAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLL 314 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K Sbjct: 315 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 374 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+ Sbjct: 375 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 434 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D WALKDEV+ LIS+TL EREREI+RLYYGLD ECLTWE Sbjct: 435 NPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWE 479 Score = 36.2 bits (82), Expect(3) = e-103 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL++RLGCEPSD+QLAIS + Sbjct: 241 RLKDRLGCEPSDEQLAISLK 260 Score = 28.9 bits (63), Expect(3) = e-103 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AM++K Sbjct: 502 KLKHAARKRKMEAMILK 518 >gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao] Length = 508 Score = 359 bits (921), Expect(3) = e-102 Identities = 181/221 (81%), Positives = 197/221 (89%) Frame = -2 Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986 LKIS +L+S L+E SLARE+LAM NVRLVMSIAQRYDNMGAEM+DL+QGGLIGLLRGIE Sbjct: 248 LKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLIGLLRGIE 307 Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806 KFD SKGYKISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK+RLE KG+TP Sbjct: 308 KFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITP 367 Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626 +++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIADN E+ PWH Sbjct: 368 TIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADNHVENIPWH 427 Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 GVD WALKDEVN LI+ TL EREREI+RLYYGLD E LTWE Sbjct: 428 GVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWE 468 Score = 35.4 bits (80), Expect(3) = e-102 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL+ERLGCEPSD+QLA S + Sbjct: 230 RLKERLGCEPSDEQLATSLK 249 Score = 28.9 bits (63), Expect(3) = e-102 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARK+ ++AML+K Sbjct: 491 KLKHAARKKKMEAMLVK 507 >ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2 [Citrus sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X3 [Citrus sinensis] Length = 508 Score = 362 bits (930), Expect(3) = e-102 Identities = 186/228 (81%), Positives = 196/228 (85%) Frame = -2 Query: 1186 MINLLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLI 1007 M L L+IS +LQS LME SLARE+L M NVRLVMSIAQRYDNMGA+MADLVQGGLI Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300 Query: 1006 GLLRGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRL 827 GLLRGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RL Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360 Query: 826 EVKGVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNL 647 E KGVTPSV+ IA LNMSQKKVRNATEA KV+SLDREAFPSLNGLPGET HSYIADN Sbjct: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420 Query: 646 PESNPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 E+NPWHGVD WALKDEVN LI TL EREREI+RLYYGLD ECLTWE Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWE 468 Score = 31.6 bits (70), Expect(3) = e-102 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAIS 1167 RL+ERLGCEPS +QLA S Sbjct: 230 RLKERLGCEPSMEQLAAS 247 Score = 28.9 bits (63), Expect(3) = e-102 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARK+ ++AML+K Sbjct: 491 KLKHAARKKKMEAMLVK 507 >ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina] gi|557539599|gb|ESR50643.1| hypothetical protein CICLE_v10031289mg [Citrus clementina] Length = 508 Score = 361 bits (926), Expect(3) = e-102 Identities = 184/228 (80%), Positives = 196/228 (85%) Frame = -2 Query: 1186 MINLLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLI 1007 M L L+IS +LQS LME SLARE+L M NVRLVMSIAQRYDNMGA+MADL+QGGLI Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300 Query: 1006 GLLRGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRL 827 GLLRGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RL Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360 Query: 826 EVKGVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNL 647 E KGVTP+V+ IA LNMSQKKVRNATEA KV+SLDREAFPSLNGLPGET HSYIADN Sbjct: 361 EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420 Query: 646 PESNPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 E+NPWHGVD WALKDEVN LI TL EREREI+RLYYGLD ECLTWE Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWE 468 Score = 31.6 bits (70), Expect(3) = e-102 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAIS 1167 RL+ERLGCEPS +QLA S Sbjct: 230 RLKERLGCEPSMEQLAAS 247 Score = 28.9 bits (63), Expect(3) = e-102 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARK+ ++AML+K Sbjct: 491 KLKHAARKKKMEAMLVK 507 >ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 508 Score = 358 bits (919), Expect(3) = e-102 Identities = 182/221 (82%), Positives = 196/221 (88%) Frame = -2 Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986 LKIS +LQS + SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE Sbjct: 248 LKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 307 Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806 KFD SKG++ISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RLE KGVTP Sbjct: 308 KFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 367 Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626 S++ IA SLN+SQKKVRNATEA SKV+SLDREAFPSLNGLPGET HSYIADN E+NPWH Sbjct: 368 SIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWH 427 Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 GVD WALKDEVN LI+ TL ERE+EI+RLYYGLDNE LTWE Sbjct: 428 GVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWE 468 Score = 33.1 bits (74), Expect(3) = e-102 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL+ERLGC+PSD+Q+A S + Sbjct: 230 RLKERLGCDPSDEQVATSLK 249 Score = 29.6 bits (65), Expect(3) = e-102 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARK+ L+AML+K Sbjct: 491 KLKHAARKKKLEAMLVK 507 >emb|CBI26421.3| unnamed protein product [Vitis vinifera] Length = 555 Score = 367 bits (943), Expect(3) = e-101 Identities = 184/221 (83%), Positives = 201/221 (90%) Frame = -2 Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986 L++S +LQS L+E SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE Sbjct: 295 LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 354 Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806 KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP+HLHERLSLI NAK+RLE KG+TP Sbjct: 355 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 414 Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626 S++ IA LNMSQKKVRNATEA SKV+SLDREAFPSLNGLPGETLHSYIAD E+NPWH Sbjct: 415 SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 474 Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 GVD WALKDEVN LI++TL ERER+I+RLYYGLDNECLTWE Sbjct: 475 GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWE 515 Score = 28.1 bits (61), Expect(3) = e-101 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAIS 1167 RL+ER+G EP+D+Q+A S Sbjct: 277 RLKERIGSEPTDEQVAAS 294 Score = 24.6 bits (52), Expect(3) = e-101 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLK+AARK ++AML+K Sbjct: 538 KLKNAARKGRMEAMLVK 554 >ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis vinifera] Length = 497 Score = 367 bits (943), Expect(3) = e-101 Identities = 184/221 (83%), Positives = 201/221 (90%) Frame = -2 Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986 L++S +LQS L+E SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE Sbjct: 237 LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 296 Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806 KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP+HLHERLSLI NAK+RLE KG+TP Sbjct: 297 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 356 Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626 S++ IA LNMSQKKVRNATEA SKV+SLDREAFPSLNGLPGETLHSYIAD E+NPWH Sbjct: 357 SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 416 Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 GVD WALKDEVN LI++TL ERER+I+RLYYGLDNECLTWE Sbjct: 417 GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWE 457 Score = 28.1 bits (61), Expect(3) = e-101 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAIS 1167 RL+ER+G EP+D+Q+A S Sbjct: 219 RLKERIGSEPTDEQVAAS 236 Score = 24.6 bits (52), Expect(3) = e-101 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLK+AARK ++AML+K Sbjct: 480 KLKNAARKGRMEAMLVK 496 >emb|CAA75859.1| Sig1 [Sinapis alba] Length = 481 Score = 356 bits (914), Expect(3) = e-101 Identities = 179/225 (79%), Positives = 197/225 (87%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDNMGAEM+DLVQGGLIGLL Sbjct: 217 LAMSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLL 276 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K Sbjct: 277 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 336 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+ Sbjct: 337 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 396 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D ALKDEV+ LIS TL EREREI+RLYYGLD ECLTWE Sbjct: 397 NPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLDKECLTWE 441 Score = 34.3 bits (77), Expect(3) = e-101 Identities = 14/20 (70%), Positives = 18/20 (90%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL +RLGCEPSD+QLA+S + Sbjct: 203 RLTDRLGCEPSDEQLAMSLK 222 Score = 28.9 bits (63), Expect(3) = e-101 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AM++K Sbjct: 464 KLKHAARKRKMEAMILK 480 >ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus] gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus] Length = 508 Score = 360 bits (923), Expect(3) = e-101 Identities = 180/225 (80%), Positives = 199/225 (88%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +L+S +MESSLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLL Sbjct: 244 LAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 303 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK++L+ K Sbjct: 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEK 363 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMS+KKV+NATEA SKV+SLDREAFPSLNGLPGET HSYIADN E+ Sbjct: 364 GITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLEN 423 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D W LK EVN LI+ TL +REREI+RLY+GLDNECLTWE Sbjct: 424 NPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWE 468 Score = 36.2 bits (82), Expect(3) = e-101 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL++RLGCEPS+DQLAIS + Sbjct: 230 RLKQRLGCEPSEDQLAISLK 249 Score = 22.7 bits (47), Expect(3) = e-101 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLK AA+ R ++AML+K Sbjct: 491 KLKKAAKTRKMEAMLLK 507 >gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica] Length = 512 Score = 353 bits (907), Expect(3) = e-101 Identities = 176/221 (79%), Positives = 196/221 (88%) Frame = -2 Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986 L+IS LQS L+E LARE+LAM NVRLVMSIAQRYDNMGAEMADL+QGGLIGLLRGIE Sbjct: 252 LRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQGGLIGLLRGIE 311 Query: 985 KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806 KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK+RLE KG+TP Sbjct: 312 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITP 371 Query: 805 SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626 S++ IA SLNMS+KKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIADN E+ PWH Sbjct: 372 SIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIADNRLENIPWH 431 Query: 625 GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 GVD WALK+EV+ LI+ L ERE+EI++LYYGL+NECLTWE Sbjct: 432 GVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWE 472 Score = 35.0 bits (79), Expect(3) = e-101 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAIS 1167 RL+ERLGCEPSD+QLA S Sbjct: 234 RLKERLGCEPSDEQLATS 251 Score = 29.6 bits (65), Expect(3) = e-101 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AML+K Sbjct: 495 KLKHAARKREMEAMLLK 511 >ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata] gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata] Length = 503 Score = 353 bits (907), Expect(3) = e-101 Identities = 177/225 (78%), Positives = 198/225 (88%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL Sbjct: 239 LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 298 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K Sbjct: 299 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 358 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+ Sbjct: 359 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRVEN 418 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D ALK+EV+ LIS+TL EREREI+RLYYGLD ECLTWE Sbjct: 419 NPWHGYDDLALKEEVSKLISATLGEREREIIRLYYGLDKECLTWE 463 Score = 35.8 bits (81), Expect(3) = e-101 Identities = 14/20 (70%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL++RLGCEPSD+QLA+S + Sbjct: 225 RLKDRLGCEPSDEQLAVSLK 244 Score = 28.9 bits (63), Expect(3) = e-101 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AM++K Sbjct: 486 KLKHAARKRKMEAMILK 502 >ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella] gi|482570853|gb|EOA35041.1| hypothetical protein CARUB_v10020145mg [Capsella rubella] Length = 521 Score = 353 bits (905), Expect(3) = e-101 Identities = 176/225 (78%), Positives = 198/225 (88%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL Sbjct: 257 LAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 316 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K Sbjct: 317 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 376 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN E+ Sbjct: 377 GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 436 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D ALK+EV+ LI++TL EREREI+RLYYGLD ECLTWE Sbjct: 437 NPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLDKECLTWE 481 Score = 36.2 bits (82), Expect(3) = e-101 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL++RLGCEPSD+QLAIS + Sbjct: 243 RLKDRLGCEPSDEQLAISLK 262 Score = 28.9 bits (63), Expect(3) = e-101 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AM++K Sbjct: 504 KLKHAARKRKMEAMILK 520 >ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana] gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor A; Short=Sigma-A; AltName: Full=RNA polymerase sigma factor sig1; Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA polymerase sigma factor sig2; Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags: Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana] gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana] gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana] gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana] gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana] gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana] Length = 502 Score = 350 bits (898), Expect(3) = e-100 Identities = 176/225 (78%), Positives = 197/225 (87%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL Sbjct: 238 LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 297 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K Sbjct: 298 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 357 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIAD E+ Sbjct: 358 GITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN 417 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D ALK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWE Sbjct: 418 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWE 462 Score = 35.8 bits (81), Expect(3) = e-100 Identities = 14/20 (70%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL++RLGCEPSD+QLA+S + Sbjct: 224 RLKDRLGCEPSDEQLAVSLK 243 Score = 28.9 bits (63), Expect(3) = e-100 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AM++K Sbjct: 485 KLKHAARKRKMEAMILK 501 >gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana] Length = 502 Score = 350 bits (898), Expect(3) = e-100 Identities = 176/225 (78%), Positives = 197/225 (87%) Frame = -2 Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998 L LKIS +LQ+ LME LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL Sbjct: 238 LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 297 Query: 997 RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818 RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K Sbjct: 298 RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 357 Query: 817 GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638 G+TPS++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIAD E+ Sbjct: 358 GITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN 417 Query: 637 NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503 NPWHG D ALK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWE Sbjct: 418 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWE 462 Score = 35.8 bits (81), Expect(3) = e-100 Identities = 14/20 (70%), Positives = 19/20 (95%) Frame = -1 Query: 1220 RLEERLGCEPSDDQLAISFE 1161 RL++RLGCEPSD+QLA+S + Sbjct: 224 RLKDRLGCEPSDEQLAVSLK 243 Score = 28.9 bits (63), Expect(3) = e-100 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 456 KLKHAARKR*LDAMLIK 406 KLKHAARKR ++AM++K Sbjct: 485 KLKHAARKRKMEAMILK 501