BLASTX nr result

ID: Atropa21_contig00006411 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00006411
         (1220 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      396   e-116
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   392   e-115
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      365   e-106
ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-...   367   e-106
ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-...   365   e-105
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   365   e-104
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   361   e-103
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]             359   e-102
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   362   e-102
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   361   e-102
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   358   e-102
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              367   e-101
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   367   e-101
emb|CAA75859.1| Sig1 [Sinapis alba]                                   356   e-101
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   360   e-101
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe...   353   e-101
ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ...   353   e-101
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   353   e-101
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   350   e-100
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali...   350   e-100

>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  396 bits (1017), Expect(3) = e-116
 Identities = 201/225 (89%), Positives = 210/225 (93%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LK+S TDLQSTL+E SLARERLAM NVRLVMSIAQRYDN+GAEMADLVQGGLIGLL
Sbjct: 244  LAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLL 303

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFDPSKGYKISTYVYWWI QGVS ALVENSRTLRLPT+LHERLSLI NAK RLE K
Sbjct: 304  RGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEK 363

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPSVN IAASLNMSQKKVRNATEASSK+YSLDREAFPSLNGLPGETLHSYIADN  E+
Sbjct: 364  GITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLEN 423

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHGVDVWALKDEVNNLISSTL +REREI+RLYYGLDNECLTWE
Sbjct: 424  NPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWE 468



 Score = 38.5 bits (88), Expect(3) = e-116
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL+ERLGCEPSDDQLA+S +
Sbjct: 230  RLKERLGCEPSDDQLAVSLK 249



 Score = 34.7 bits (78), Expect(3) = e-116
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIKQ 403
           KLKHAARKR LDAMLIKQ
Sbjct: 491 KLKHAARKRQLDAMLIKQ 508


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 509

 Score =  392 bits (1008), Expect(3) = e-115
 Identities = 199/225 (88%), Positives = 206/225 (91%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LK+S TDLQSTL+E SLARERL+M NVRLVMSIAQRYDNMGAEMADLVQGGLIGLL
Sbjct: 245  LAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 304

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFDPSKGYKISTYVYWWI QGVS  LVENSRTLRLPTHLHERL LI NAKMRLE K
Sbjct: 305  RGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMRLEEK 364

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+ PSVN IAASLNMSQKKVRNATEASSKVYSLDRE FPSLNGLPG TLHSYIADN  E+
Sbjct: 365  GINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADNHLEN 424

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHGVDVWALKDEVNNLISSTL EREREI+RLYYGLD+ECLTWE
Sbjct: 425  NPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWE 469



 Score = 38.5 bits (88), Expect(3) = e-115
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL+ERLGCEPSDDQLA+S +
Sbjct: 231  RLKERLGCEPSDDQLAVSLK 250



 Score = 34.7 bits (78), Expect(3) = e-115
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIKQ 403
           KLKHAARKR LDAMLIKQ
Sbjct: 492 KLKHAARKRRLDAMLIKQ 509


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  365 bits (936), Expect(3) = e-106
 Identities = 185/225 (82%), Positives = 198/225 (88%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  DL+STL+E SLARE+LAM NVRLVMSIAQRYD  G EMADL+QGGLIGLL
Sbjct: 238  LAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLL 297

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD S+G+KISTYVYWWI QGVS ALVENSRTLRLP HLHERLSLI NAK++L+  
Sbjct: 298  RGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKEN 357

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS+  IA  LNMSQKKVRNATEASSKV+SLDREAFPSLNGLPGETLHSYIADN  E+
Sbjct: 358  GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLEN 417

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
             PWHGVD W LKDEVNNLISSTL EREREIVRLYYGLDNECLTWE
Sbjct: 418  IPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWE 462



 Score = 38.9 bits (89), Expect(3) = e-106
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL+ERLGCEPSDDQLAIS +
Sbjct: 224  RLKERLGCEPSDDQLAISLK 243



 Score = 32.3 bits (72), Expect(3) = e-106
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR LDAML+K
Sbjct: 485 KLKHAARKRRLDAMLVK 501


>ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Solanum
            tuberosum] gi|565361192|ref|XP_006347342.1| PREDICTED:
            RNA polymerase sigma factor sigA-like isoform X2 [Solanum
            tuberosum]
          Length = 505

 Score =  367 bits (943), Expect(3) = e-106
 Identities = 184/225 (81%), Positives = 201/225 (89%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LK+S  DL+STLME SLARE+LAM NVRLVMSIAQRYD+MG EMADL+QGGLIGLL
Sbjct: 241  LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL 300

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD S+G+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERLSLI NAK++L+  
Sbjct: 301  RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDN 360

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS+  IA  LNMSQKKVRNATEASSKV+SLDREA+PSLNGLPG TLHSYIADN  E+
Sbjct: 361  GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN 420

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHGVD WALKDEVNNLISSTL ERER+IVRLYYGLDNECLTWE
Sbjct: 421  NPWHGVDGWALKDEVNNLISSTLRERERDIVRLYYGLDNECLTWE 465



 Score = 36.6 bits (83), Expect(3) = e-106
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -1

Query: 1217 LEERLGCEPSDDQLAISFE 1161
            L+ERLGCEPSDDQLA+S +
Sbjct: 228  LKERLGCEPSDDQLAVSLK 246



 Score = 31.2 bits (69), Expect(3) = e-106
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARK+ LDAML+K
Sbjct: 488 KLKHAARKKQLDAMLVK 504


>ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 505

 Score =  365 bits (936), Expect(3) = e-105
 Identities = 182/225 (80%), Positives = 200/225 (88%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LK+S  DL+STLME SLARE+LAM NVRLVMSIAQRYD+MG EMADL+QGGLIGLL
Sbjct: 241  LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL 300

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD S+G+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERLSLI NAK++L+  
Sbjct: 301  RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDS 360

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS+  IA  LNMSQKKVRNATEASSKV+SLDREA+PSLNGLPG TLHSYIADN  E+
Sbjct: 361  GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN 420

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHGVD WALKDEVNNLISS L ERER+I+RLYYGLDNECLTWE
Sbjct: 421  NPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWE 465



 Score = 36.6 bits (83), Expect(3) = e-105
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -1

Query: 1217 LEERLGCEPSDDQLAISFE 1161
            L+ERLGCEPSDDQLA+S +
Sbjct: 228  LKERLGCEPSDDQLAVSLK 246



 Score = 31.2 bits (69), Expect(3) = e-105
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARK+ LDAML+K
Sbjct: 488 KLKHAARKKQLDAMLVK 504


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  365 bits (938), Expect(3) = e-104
 Identities = 182/221 (82%), Positives = 199/221 (90%)
 Frame = -2

Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
            L+IS  DLQS L++ SLARE+LAM NVRLVMSIAQ+YDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 249  LRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIE 308

Query: 985  KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
            KFD SKG+KISTYVYWWI QGVS ALV+NSRTLRLP HLHERL LI NAK+RLE KGVTP
Sbjct: 309  KFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 368

Query: 805  SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
            S++ IA SLNMSQ+KVRNATEA SKV+SLDREAFPSLNGLPGET HSYIADN PE+NPWH
Sbjct: 369  SIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNPWH 428

Query: 625  GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            GVD WALK+EVN LI STL ERE+EI+RLY+GLD ECLTWE
Sbjct: 429  GVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWE 469



 Score = 33.5 bits (75), Expect(3) = e-104
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAIS 1167
            RL+ERLGCEPSD+Q+A S
Sbjct: 231  RLKERLGCEPSDEQIADS 248



 Score = 28.9 bits (63), Expect(3) = e-104
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR  +AML+K
Sbjct: 492 KLKHAARKRNTEAMLVK 508


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  361 bits (926), Expect(3) = e-103
 Identities = 180/225 (80%), Positives = 199/225 (88%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +LQ+ LME  LARE+LAM NVRLVMSIAQRYDNMGAEM+DLVQGGLIGLL
Sbjct: 255  LAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLL 314

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 315  RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 374

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN  E+
Sbjct: 375  GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 434

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D WALKDEV+ LIS+TL EREREI+RLYYGLD ECLTWE
Sbjct: 435  NPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWE 479



 Score = 36.2 bits (82), Expect(3) = e-103
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL++RLGCEPSD+QLAIS +
Sbjct: 241  RLKDRLGCEPSDEQLAISLK 260



 Score = 28.9 bits (63), Expect(3) = e-103
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AM++K
Sbjct: 502 KLKHAARKRKMEAMILK 518


>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  359 bits (921), Expect(3) = e-102
 Identities = 181/221 (81%), Positives = 197/221 (89%)
 Frame = -2

Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
            LKIS  +L+S L+E SLARE+LAM NVRLVMSIAQRYDNMGAEM+DL+QGGLIGLLRGIE
Sbjct: 248  LKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLIGLLRGIE 307

Query: 985  KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
            KFD SKGYKISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK+RLE KG+TP
Sbjct: 308  KFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITP 367

Query: 805  SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
            +++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIADN  E+ PWH
Sbjct: 368  TIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADNHVENIPWH 427

Query: 625  GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            GVD WALKDEVN LI+ TL EREREI+RLYYGLD E LTWE
Sbjct: 428  GVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWE 468



 Score = 35.4 bits (80), Expect(3) = e-102
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL+ERLGCEPSD+QLA S +
Sbjct: 230  RLKERLGCEPSDEQLATSLK 249



 Score = 28.9 bits (63), Expect(3) = e-102
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARK+ ++AML+K
Sbjct: 491 KLKHAARKKKMEAMLVK 507


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  362 bits (930), Expect(3) = e-102
 Identities = 186/228 (81%), Positives = 196/228 (85%)
 Frame = -2

Query: 1186 MINLLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLI 1007
            M  L   L+IS  +LQS LME SLARE+L M NVRLVMSIAQRYDNMGA+MADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 1006 GLLRGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRL 827
            GLLRGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 826  EVKGVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNL 647
            E KGVTPSV+ IA  LNMSQKKVRNATEA  KV+SLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 646  PESNPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
             E+NPWHGVD WALKDEVN LI  TL EREREI+RLYYGLD ECLTWE
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWE 468



 Score = 31.6 bits (70), Expect(3) = e-102
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAIS 1167
            RL+ERLGCEPS +QLA S
Sbjct: 230  RLKERLGCEPSMEQLAAS 247



 Score = 28.9 bits (63), Expect(3) = e-102
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARK+ ++AML+K
Sbjct: 491 KLKHAARKKKMEAMLVK 507


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  361 bits (926), Expect(3) = e-102
 Identities = 184/228 (80%), Positives = 196/228 (85%)
 Frame = -2

Query: 1186 MINLLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLI 1007
            M  L   L+IS  +LQS LME SLARE+L M NVRLVMSIAQRYDNMGA+MADL+QGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300

Query: 1006 GLLRGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRL 827
            GLLRGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 826  EVKGVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNL 647
            E KGVTP+V+ IA  LNMSQKKVRNATEA  KV+SLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 646  PESNPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
             E+NPWHGVD WALKDEVN LI  TL EREREI+RLYYGLD ECLTWE
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWE 468



 Score = 31.6 bits (70), Expect(3) = e-102
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAIS 1167
            RL+ERLGCEPS +QLA S
Sbjct: 230  RLKERLGCEPSMEQLAAS 247



 Score = 28.9 bits (63), Expect(3) = e-102
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARK+ ++AML+K
Sbjct: 491 KLKHAARKKKMEAMLVK 507


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  358 bits (919), Expect(3) = e-102
 Identities = 182/221 (82%), Positives = 196/221 (88%)
 Frame = -2

Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
            LKIS  +LQS  +  SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 248  LKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 307

Query: 985  KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
            KFD SKG++ISTYVYWWI QGVS ALVENSRTLRLP HLHERL LI NAK+RLE KGVTP
Sbjct: 308  KFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 367

Query: 805  SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
            S++ IA SLN+SQKKVRNATEA SKV+SLDREAFPSLNGLPGET HSYIADN  E+NPWH
Sbjct: 368  SIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWH 427

Query: 625  GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            GVD WALKDEVN LI+ TL ERE+EI+RLYYGLDNE LTWE
Sbjct: 428  GVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWE 468



 Score = 33.1 bits (74), Expect(3) = e-102
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL+ERLGC+PSD+Q+A S +
Sbjct: 230  RLKERLGCDPSDEQVATSLK 249



 Score = 29.6 bits (65), Expect(3) = e-102
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARK+ L+AML+K
Sbjct: 491 KLKHAARKKKLEAMLVK 507


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  367 bits (943), Expect(3) = e-101
 Identities = 184/221 (83%), Positives = 201/221 (90%)
 Frame = -2

Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
            L++S  +LQS L+E SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 295  LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 354

Query: 985  KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
            KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP+HLHERLSLI NAK+RLE KG+TP
Sbjct: 355  KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 414

Query: 805  SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
            S++ IA  LNMSQKKVRNATEA SKV+SLDREAFPSLNGLPGETLHSYIAD   E+NPWH
Sbjct: 415  SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 474

Query: 625  GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            GVD WALKDEVN LI++TL ERER+I+RLYYGLDNECLTWE
Sbjct: 475  GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWE 515



 Score = 28.1 bits (61), Expect(3) = e-101
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAIS 1167
            RL+ER+G EP+D+Q+A S
Sbjct: 277  RLKERIGSEPTDEQVAAS 294



 Score = 24.6 bits (52), Expect(3) = e-101
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLK+AARK  ++AML+K
Sbjct: 538 KLKNAARKGRMEAMLVK 554


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  367 bits (943), Expect(3) = e-101
 Identities = 184/221 (83%), Positives = 201/221 (90%)
 Frame = -2

Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
            L++S  +LQS L+E SLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE
Sbjct: 237  LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 296

Query: 985  KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
            KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLP+HLHERLSLI NAK+RLE KG+TP
Sbjct: 297  KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 356

Query: 805  SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
            S++ IA  LNMSQKKVRNATEA SKV+SLDREAFPSLNGLPGETLHSYIAD   E+NPWH
Sbjct: 357  SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 416

Query: 625  GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            GVD WALKDEVN LI++TL ERER+I+RLYYGLDNECLTWE
Sbjct: 417  GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWE 457



 Score = 28.1 bits (61), Expect(3) = e-101
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAIS 1167
            RL+ER+G EP+D+Q+A S
Sbjct: 219  RLKERIGSEPTDEQVAAS 236



 Score = 24.6 bits (52), Expect(3) = e-101
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLK+AARK  ++AML+K
Sbjct: 480 KLKNAARKGRMEAMLVK 496


>emb|CAA75859.1| Sig1 [Sinapis alba]
          Length = 481

 Score =  356 bits (914), Expect(3) = e-101
 Identities = 179/225 (79%), Positives = 197/225 (87%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +LQ+ LME  LARE+LAM NVRLVMSIAQRYDNMGAEM+DLVQGGLIGLL
Sbjct: 217  LAMSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLL 276

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 277  RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 336

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN  E+
Sbjct: 337  GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 396

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D  ALKDEV+ LIS TL EREREI+RLYYGLD ECLTWE
Sbjct: 397  NPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLDKECLTWE 441



 Score = 34.3 bits (77), Expect(3) = e-101
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL +RLGCEPSD+QLA+S +
Sbjct: 203  RLTDRLGCEPSDEQLAMSLK 222



 Score = 28.9 bits (63), Expect(3) = e-101
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AM++K
Sbjct: 464 KLKHAARKRKMEAMILK 480


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
            gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  360 bits (923), Expect(3) = e-101
 Identities = 180/225 (80%), Positives = 199/225 (88%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +L+S +MESSLARE+LAM NVRLVMSIAQRYDNMGAEMADLVQGGLIGLL
Sbjct: 244  LAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 303

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG+KISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK++L+ K
Sbjct: 304  RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEK 363

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMS+KKV+NATEA SKV+SLDREAFPSLNGLPGET HSYIADN  E+
Sbjct: 364  GITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLEN 423

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D W LK EVN LI+ TL +REREI+RLY+GLDNECLTWE
Sbjct: 424  NPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWE 468



 Score = 36.2 bits (82), Expect(3) = e-101
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL++RLGCEPS+DQLAIS +
Sbjct: 230  RLKQRLGCEPSEDQLAISLK 249



 Score = 22.7 bits (47), Expect(3) = e-101
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLK AA+ R ++AML+K
Sbjct: 491 KLKKAAKTRKMEAMLLK 507


>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  353 bits (907), Expect(3) = e-101
 Identities = 176/221 (79%), Positives = 196/221 (88%)
 Frame = -2

Query: 1165 LKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 986
            L+IS   LQS L+E  LARE+LAM NVRLVMSIAQRYDNMGAEMADL+QGGLIGLLRGIE
Sbjct: 252  LRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQGGLIGLLRGIE 311

Query: 985  KFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVKGVTP 806
            KFD SKG+KISTYVYWWI QGVS ALVENSRTLRLPTHLHERL LI NAK+RLE KG+TP
Sbjct: 312  KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRLEEKGITP 371

Query: 805  SVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPESNPWH 626
            S++ IA SLNMS+KKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIADN  E+ PWH
Sbjct: 372  SIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIADNRLENIPWH 431

Query: 625  GVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            GVD WALK+EV+ LI+  L ERE+EI++LYYGL+NECLTWE
Sbjct: 432  GVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWE 472



 Score = 35.0 bits (79), Expect(3) = e-101
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAIS 1167
            RL+ERLGCEPSD+QLA S
Sbjct: 234  RLKERLGCEPSDEQLATS 251



 Score = 29.6 bits (65), Expect(3) = e-101
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AML+K
Sbjct: 495 KLKHAARKREMEAMLLK 511


>ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 503

 Score =  353 bits (907), Expect(3) = e-101
 Identities = 177/225 (78%), Positives = 198/225 (88%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +LQ+ LME  LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 239  LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 298

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 299  RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 358

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN  E+
Sbjct: 359  GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRVEN 418

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D  ALK+EV+ LIS+TL EREREI+RLYYGLD ECLTWE
Sbjct: 419  NPWHGYDDLALKEEVSKLISATLGEREREIIRLYYGLDKECLTWE 463



 Score = 35.8 bits (81), Expect(3) = e-101
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL++RLGCEPSD+QLA+S +
Sbjct: 225  RLKDRLGCEPSDEQLAVSLK 244



 Score = 28.9 bits (63), Expect(3) = e-101
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AM++K
Sbjct: 486 KLKHAARKRKMEAMILK 502


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  353 bits (905), Expect(3) = e-101
 Identities = 176/225 (78%), Positives = 198/225 (88%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +LQ+ LME  LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 257  LAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 316

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 317  RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 376

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIADN  E+
Sbjct: 377  GITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLEN 436

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D  ALK+EV+ LI++TL EREREI+RLYYGLD ECLTWE
Sbjct: 437  NPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLDKECLTWE 481



 Score = 36.2 bits (82), Expect(3) = e-101
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL++RLGCEPSD+QLAIS +
Sbjct: 243  RLKDRLGCEPSDEQLAISLK 262



 Score = 28.9 bits (63), Expect(3) = e-101
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AM++K
Sbjct: 504 KLKHAARKRKMEAMILK 520


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  350 bits (898), Expect(3) = e-100
 Identities = 176/225 (78%), Positives = 197/225 (87%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +LQ+ LME  LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 238  LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 297

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 298  RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 357

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIAD   E+
Sbjct: 358  GITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN 417

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D  ALK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWE
Sbjct: 418  NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWE 462



 Score = 35.8 bits (81), Expect(3) = e-100
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL++RLGCEPSD+QLA+S +
Sbjct: 224  RLKDRLGCEPSDEQLAVSLK 243



 Score = 28.9 bits (63), Expect(3) = e-100
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AM++K
Sbjct: 485 KLKHAARKRKMEAMILK 501


>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
          Length = 502

 Score =  350 bits (898), Expect(3) = e-100
 Identities = 176/225 (78%), Positives = 197/225 (87%)
 Frame = -2

Query: 1177 LLFPLKISCTDLQSTLMESSLARERLAMGNVRLVMSIAQRYDNMGAEMADLVQGGLIGLL 998
            L   LKIS  +LQ+ LME  LARE+LAM NVRLVMSIAQRYDN+GAEM+DLVQGGLIGLL
Sbjct: 238  LAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLL 297

Query: 997  RGIEKFDPSKGYKISTYVYWWILQGVSIALVENSRTLRLPTHLHERLSLICNAKMRLEVK 818
            RGIEKFD SKG++ISTYVYWWI QGVS ALV+NSRTLRLPTHLHERL LI NAK+RL+ K
Sbjct: 298  RGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK 357

Query: 817  GVTPSVNYIAASLNMSQKKVRNATEASSKVYSLDREAFPSLNGLPGETLHSYIADNLPES 638
            G+TPS++ IA SLNMSQKKVRNATEA SKV+SLDR+AFPSLNGLPGET HSYIAD   E+
Sbjct: 358  GITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN 417

Query: 637  NPWHGVDVWALKDEVNNLISSTLSEREREIVRLYYGLDNECLTWE 503
            NPWHG D  ALK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWE
Sbjct: 418  NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWE 462



 Score = 35.8 bits (81), Expect(3) = e-100
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = -1

Query: 1220 RLEERLGCEPSDDQLAISFE 1161
            RL++RLGCEPSD+QLA+S +
Sbjct: 224  RLKDRLGCEPSDEQLAVSLK 243



 Score = 28.9 bits (63), Expect(3) = e-100
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 456 KLKHAARKR*LDAMLIK 406
           KLKHAARKR ++AM++K
Sbjct: 485 KLKHAARKRKMEAMILK 501


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