BLASTX nr result
ID: Atropa21_contig00005799
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00005799
(1164 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub... 371 e-100
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I... 371 e-100
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I... 343 6e-92
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub... 343 1e-91
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I... 269 1e-69
gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus pe... 268 3e-69
emb|CBI30093.3| unnamed protein product [Vitis vinifera] 267 7e-69
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I... 267 7e-69
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri... 266 9e-69
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I... 265 3e-68
gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus... 261 5e-67
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr... 260 9e-67
ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu... 260 9e-67
ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, I... 259 2e-66
gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family pro... 258 4e-66
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin... 254 5e-65
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ... 253 8e-65
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun... 253 1e-64
gb|AFK43162.1| unknown [Medicago truncatula] 251 4e-64
ref|NP_191267.1| DNA-directed RNA polymerase V subunit 5A [Arabi... 248 3e-63
>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 371 bits (952), Expect = e-100
Identities = 192/228 (84%), Positives = 198/228 (86%)
Frame = +1
Query: 64 MDLNNGLAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTT 243
MDLN GLAMDVD +N GTCL SF+DDGTVESHRYFLARRT+LEMLKDRGFAIPNSEIDTT
Sbjct: 1 MDLN-GLAMDVDGDNLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTT 59
Query: 244 LLEFRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLS 423
L EFR KYGQ PD++RLR+SAMHR DLTNKVLVIFCG AVKVNVIRSILTQIMNKESLS
Sbjct: 60 LQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLS 119
Query: 424 RLILVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXX 603
RLILVIQNQMTNPAMKAVEL SFKVEIFQITDLLVNITK VLKPRHELL D
Sbjct: 120 RLILVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKK 179
Query: 604 XXXXXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
PRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW
Sbjct: 180 YNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 371 bits (952), Expect = e-100
Identities = 192/228 (84%), Positives = 198/228 (86%)
Frame = +1
Query: 64 MDLNNGLAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTT 243
MDLN GLAMDVD EN GTCL SF+DDGTVESHRYFLARRT+LEMLKDRGFAIPNSEIDTT
Sbjct: 1 MDLN-GLAMDVDGENLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTT 59
Query: 244 LLEFRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLS 423
L EFR KYGQ PD++RLR+SAMHR DLTNKVLVIFCG AVKVNVIRSILTQIMNKESLS
Sbjct: 60 LQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLS 119
Query: 424 RLILVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXX 603
RLILVIQNQMTNPA+KAVEL SFKVEIFQITDLLVNITK VLKPRHELL D
Sbjct: 120 RLILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKK 179
Query: 604 XXXXXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
PRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW
Sbjct: 180 YNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 343 bits (881), Expect = 6e-92
Identities = 173/224 (77%), Positives = 189/224 (84%)
Frame = +1
Query: 76 NGLAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEF 255
NG AM+VD N CLTSF+DDGTVESHRYFLAR+TMLEMLKDRGFAIPNSEI+TTL EF
Sbjct: 4 NGSAMEVDVVNVSPCLTSFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIETTLQEF 63
Query: 256 RAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLIL 435
R KYGQRPD++RLRISAMHRTDLTNKVLVIFCG +VK+NVIR+IL+QIMNKESLSRLIL
Sbjct: 64 REKYGQRPDVERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRNILSQIMNKESLSRLIL 123
Query: 436 VIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXX 615
+I+N MTNPAMK VE FK EIFQITDLLVNITK VLKP+HELL +A
Sbjct: 124 IIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKYNLE 183
Query: 616 XXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
PRMSQKDAIARYYGLEKGQVVKVTY++EIIETH TYRCVW
Sbjct: 184 EKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHATYRCVW 227
>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 343 bits (879), Expect = 1e-91
Identities = 174/224 (77%), Positives = 187/224 (83%)
Frame = +1
Query: 76 NGLAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEF 255
NG AM+VD N CL SF+DDGTVESHRYFLAR+TMLEMLKDRGFAIPNSEIDTTL EF
Sbjct: 4 NGSAMEVDVVNVSPCLASFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIDTTLQEF 63
Query: 256 RAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLIL 435
R KYGQRPD +RLRISAMHRTDLTNKVLVIFCG +VK+NVIRSIL+QIMNKESLSRLIL
Sbjct: 64 REKYGQRPDAERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRSILSQIMNKESLSRLIL 123
Query: 436 VIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXX 615
+I+N MTNPAMK VE FK EIFQITDLLVNITK VLKP+HELL +
Sbjct: 124 IIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKYNLE 183
Query: 616 XXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
PRMSQKDAIARYYGLEKGQVVKVTY++EIIETHVTYRCVW
Sbjct: 184 DKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHVTYRCVW 227
>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
[Cucumis sativus]
Length = 227
Score = 269 bits (688), Expect = 1e-69
Identities = 132/213 (61%), Positives = 161/213 (75%)
Frame = +1
Query: 109 FGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPDID 288
FGTCL+S+IDDGT ESHRYFL+RRT++EMLKDRG+ I + ID +L +FR +GQ PD+D
Sbjct: 15 FGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVD 74
Query: 289 RLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAM 468
RL++SA H +D + +VLV+FCG AVKVN IR+I QI NK+SL LIL++QNQ+TN AM
Sbjct: 75 RLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAM 134
Query: 469 KAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQKD 648
KAVEL SFKVEIFQITDLLVNITK LKP H++L + PRM + D
Sbjct: 135 KAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTD 194
Query: 649 AIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
AIARYYGLEKGQVVKVTY ++ H+TYRCVW
Sbjct: 195 AIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus persica]
Length = 228
Score = 268 bits (685), Expect = 3e-69
Identities = 126/219 (57%), Positives = 170/219 (77%)
Frame = +1
Query: 91 DVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYG 270
D + E G CLT ++DDG+ ESHRY+L+RRT+LEM++DRG+++P+SEID +L +FRA +G
Sbjct: 10 DANGEILGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQDFRALHG 69
Query: 271 QRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQ 450
Q PD++RLR SA HRTD +++++VI+CG VKVNVIR + +QI NK++L+ LIL+ QNQ
Sbjct: 70 QNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLILITQNQ 129
Query: 451 MTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXP 630
+T+ A+K +EL FK EIFQITDLLVNITK VLKP+H +L + P
Sbjct: 130 ITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIEENQLP 189
Query: 631 RMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
R+S+KDAIA+YYGLEKGQVVKVTY+ +I E+HVTYRC+W
Sbjct: 190 RLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCIW 228
>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 267 bits (682), Expect = 7e-69
Identities = 136/217 (62%), Positives = 167/217 (76%)
Frame = +1
Query: 97 DFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQR 276
DFE CL+SF+D+G +ESHRY+LARRT+LEML+DRG++IP +ID +L +FR+ Y Q+
Sbjct: 115 DFE-VKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQK 173
Query: 277 PDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMT 456
PD DRLRISA R+D + K+LVIFCG VKVN IRSI TQI+NK+SLS+LILV+QN +T
Sbjct: 174 PDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHIT 233
Query: 457 NPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRM 636
+ A+KAV+L SF+VE FQITDLLVNITK VLKP+H +L D PRM
Sbjct: 234 SQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRM 293
Query: 637 SQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
Q+DAIARYYGLEKGQVVKV Y+ EI +HVTYRCVW
Sbjct: 294 LQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 267 bits (682), Expect = 7e-69
Identities = 136/217 (62%), Positives = 167/217 (76%)
Frame = +1
Query: 97 DFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQR 276
DFE CL+SF+D+G +ESHRY+LARRT+LEML+DRG++IP +ID +L +FR+ Y Q+
Sbjct: 14 DFE-VKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQK 72
Query: 277 PDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMT 456
PD DRLRISA R+D + K+LVIFCG VKVN IRSI TQI+NK+SLS+LILV+QN +T
Sbjct: 73 PDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHIT 132
Query: 457 NPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRM 636
+ A+KAV+L SF+VE FQITDLLVNITK VLKP+H +L D PRM
Sbjct: 133 SQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRM 192
Query: 637 SQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
Q+DAIARYYGLEKGQVVKV Y+ EI +HVTYRCVW
Sbjct: 193 LQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 238
Score = 266 bits (681), Expect = 9e-69
Identities = 131/217 (60%), Positives = 167/217 (76%)
Frame = +1
Query: 97 DFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQR 276
+ E G C +S+ DDGT E+HRY+L+RRT+LEML+DRG+++P+SEID +L EFRA +G
Sbjct: 22 NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPN 81
Query: 277 PDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMT 456
PDIDRL+ SA H +D + ++LV+F G +KV+ IR+I QI+NK+SL+ LILV+QNQ+T
Sbjct: 82 PDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQIT 141
Query: 457 NPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRM 636
N AMKAV+L FKVE+FQITDLLVNITK VLKP+H++L D PR+
Sbjct: 142 NQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201
Query: 637 SQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
+KDAIARYYGLEKGQVVKVTYS EI E+HVTYRCVW
Sbjct: 202 LRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cicer arietinum]
Length = 244
Score = 265 bits (676), Expect = 3e-68
Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 1/239 (0%)
Frame = +1
Query: 34 GQTKTT*FSSMDLNNGLAM-DVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRG 210
G +T + M++ NG A+ V + G CL + IDDG+VESHRY+L+RRT LEMLKDRG
Sbjct: 6 GYNETETITPMEIENGDALPQVQSQEQGKCLITKIDDGSVESHRYYLSRRTTLEMLKDRG 65
Query: 211 FAIPNSEIDTTLLEFRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSI 390
++IP SEI +L EFR +G PD+DRLR +A H T+ + ++LVIF G VKVNV+R+I
Sbjct: 66 YSIPPSEIQLSLHEFRQTHGHSPDVDRLRFTATHTTNPSKRILVIFSGPGIVKVNVVRNI 125
Query: 391 LTQIMNKESLSRLILVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELL 570
QI+N+++L+ LIL++Q+Q+T+ A+KAV L SFKVEIFQITDLLVNITK VLKP+H++L
Sbjct: 126 AGQIVNRDTLTGLILIVQSQITSQALKAVNLLSFKVEIFQITDLLVNITKHVLKPKHQVL 185
Query: 571 NDAXXXXXXXXXXXXXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
D PRM Q DAIARYYGLE+GQVVKVTY+ EI + HVTYRCVW
Sbjct: 186 TDKQKKNLLKKYNIQEKQLPRMLQTDAIARYYGLERGQVVKVTYTGEITQMHVTYRCVW 244
>gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
Length = 242
Score = 261 bits (666), Expect = 5e-67
Identities = 129/210 (61%), Positives = 160/210 (76%)
Frame = +1
Query: 118 CLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPDIDRLR 297
CL+ FIDDGTVESHRY+L+RRT LEMLKDRG++IP++EID +L +FR +G PD DRLR
Sbjct: 33 CLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLSQFRHMHGHSPDPDRLR 92
Query: 298 ISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAV 477
+S H T+ + ++LVIFCG VKV IR+I QI+N+++LS LIL+++N +T+ A+KAV
Sbjct: 93 LSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGLILIVENHVTSQALKAV 152
Query: 478 ELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQKDAIA 657
L SFKVEIFQITDLLVNITK VLKP+H++L D PRM Q DAIA
Sbjct: 153 GLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQTDAIA 212
Query: 658 RYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
RYYGLE+GQVVKVTYS EI + HVTYRCVW
Sbjct: 213 RYYGLERGQVVKVTYSGEITQMHVTYRCVW 242
>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
RNA polymerase V subunit 5A-like isoform X1 [Citrus
sinensis] gi|557544341|gb|ESR55319.1| hypothetical
protein CICLE_v10021999mg [Citrus clementina]
Length = 236
Score = 260 bits (664), Expect = 9e-67
Identities = 131/230 (56%), Positives = 175/230 (76%)
Frame = +1
Query: 58 SSMDLNNGLAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEID 237
SSM++ G + E +CL+ F+D+G+ +S RY+L+RRT+LEMLKDRG+A+ SEI+
Sbjct: 9 SSMEMEGGNGYNG--EPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEIN 66
Query: 238 TTLLEFRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKES 417
++ +FRA YGQ PD+DRLRIS H++D + ++LV+FCG VKVNVIRSI++QI+N+++
Sbjct: 67 LSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT 126
Query: 418 LSRLILVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXX 597
L+ LIL++QNQ+T+ A KAV L FKVE+FQITDLLVNITK VLKP+H++L D
Sbjct: 127 LTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
Query: 598 XXXXXXXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
PRM +KDAIA+YYGLE+GQVVKVTYS EI E+HVTYRCVW
Sbjct: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
gi|550320761|gb|EEF05018.2| hypothetical protein
POPTR_0016s03800g [Populus trichocarpa]
Length = 243
Score = 260 bits (664), Expect = 9e-67
Identities = 123/215 (57%), Positives = 166/215 (77%)
Frame = +1
Query: 103 ENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPD 282
E+ G CL+SF+D+G+ ESHRY+L+RRT+LEMLKDRG+++P+SEID +L +FR YGQ PD
Sbjct: 29 ESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPD 88
Query: 283 IDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNP 462
I+ L+ SA H++D + ++LVIFCG VKV +IR I QI +++SL+ LILV+QN +TN
Sbjct: 89 IELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQ 148
Query: 463 AMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQ 642
AMKA++L FK+EIFQITDLLVNITK +LKP+H++L++ PR+ +
Sbjct: 149 AMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLK 208
Query: 643 KDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
KDAI+RYYGLE+GQVVKVTY +I +HVTYRCVW
Sbjct: 209 KDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 243
>ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Fragaria vesca subsp. vesca]
Length = 225
Score = 259 bits (661), Expect = 2e-66
Identities = 124/212 (58%), Positives = 164/212 (77%)
Frame = +1
Query: 112 GTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPDIDR 291
G CL+ F+DDG+ ESHRYFL+RRT+LEML+DRG+++P+SEID +L +FR+ +GQ PD DR
Sbjct: 14 GPCLSGFVDDGSTESHRYFLSRRTVLEMLRDRGYSVPSSEIDLSLQDFRSLHGQNPDADR 73
Query: 292 LRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMK 471
L S +H +D + ++LVI+CG VKVNVIR + +QI NK++LS LIL++Q Q+T+ A+K
Sbjct: 74 LCFSTVHSSDPSERMLVIYCGPGIVKVNVIRGLHSQIANKDTLSGLILILQGQITSQALK 133
Query: 472 AVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQKDA 651
++L FKVEIFQITDLLVNITK VLKP+H++L + PR+SQKDA
Sbjct: 134 TLDLYPFKVEIFQITDLLVNITKHVLKPQHQVLTEQAKQALLKKFNIEEKQLPRISQKDA 193
Query: 652 IARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
IA+YYGLE+GQVVKVTYS +I + HVTYRCVW
Sbjct: 194 IAKYYGLERGQVVKVTYSGDITKGHVTYRCVW 225
>gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 228
Score = 258 bits (658), Expect = 4e-66
Identities = 132/225 (58%), Positives = 166/225 (73%), Gaps = 1/225 (0%)
Frame = +1
Query: 76 NGLAMD-VDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLE 252
NGL D + E G CL+ +DDG+ ESHRY+L+RRT+LEML+DRG+A+P SEI+ +L E
Sbjct: 4 NGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQE 63
Query: 253 FRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLI 432
FRA YGQ PD DRLR+SA H+TD + ++LV+F G VKV+ IR I I NKESL+ LI
Sbjct: 64 FRAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLI 123
Query: 433 LVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXX 612
LV+QN +TN A+KA++L SFKVEIFQITDLLVNITK VLKP+H++L +
Sbjct: 124 LVLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSI 183
Query: 613 XXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
PR+ +KDAIARYYG E+GQVVKV Y EI ++HVTYRCVW
Sbjct: 184 EEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228
>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 254 bits (649), Expect = 5e-65
Identities = 124/210 (59%), Positives = 159/210 (75%)
Frame = +1
Query: 118 CLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPDIDRLR 297
CL+ F+D+G+VESHRY+L+RRT LEMLKDRG++IP+ EID +L +FR +GQ PD DRLR
Sbjct: 28 CLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLR 87
Query: 298 ISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAV 477
+S H T+ + ++LVIFCG VKV IR+ QI+N+++L+ LIL+++N +T+ A+KAV
Sbjct: 88 LSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAV 147
Query: 478 ELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQKDAIA 657
L SFKVEIFQITDLLVNITK VLKP+H++L D PRM Q DAIA
Sbjct: 148 NLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIA 207
Query: 658 RYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
RYYGLE+GQVVKVTYS E+ + HVTYRCVW
Sbjct: 208 RYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
polymerase subunit, RPB5; RNA polymerase Rpb5,
N-terminal [Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
I, II, and III subunit RPABC1 [Medicago truncatula]
Length = 248
Score = 253 bits (647), Expect = 8e-65
Identities = 129/241 (53%), Positives = 173/241 (71%), Gaps = 1/241 (0%)
Frame = +1
Query: 28 QIGQTKTT*FSSMDLNNG-LAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKD 204
Q G T+T ++M++ NG + + CL + D+G++ESHRY+L+RRT+LEMLKD
Sbjct: 9 QNGTTETA-ITTMEIENGDITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLKD 67
Query: 205 RGFAIPNSEIDTTLLEFRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIR 384
RG++IP+ EI +L +FR +GQ PD+DRLR++A H T+ + ++LV+F G VKVN +R
Sbjct: 68 RGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVR 127
Query: 385 SILTQIMNKESLSRLILVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHE 564
I QI+N+ESL+ LIL++QNQ+T+ A+KAV L SFKVEIFQITDLLVN TK VLKP+H+
Sbjct: 128 DIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQ 187
Query: 565 LLNDAXXXXXXXXXXXXXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 744
+L D PRM Q DAIARYYGL++GQVVKVTY+ EI + HVTYRCV
Sbjct: 188 VLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 247
Query: 745 W 747
W
Sbjct: 248 W 248
>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 231
Score = 253 bits (646), Expect = 1e-64
Identities = 124/215 (57%), Positives = 159/215 (73%)
Frame = +1
Query: 103 ENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPD 282
E GTCL+S ID G+VESHRYFL+R T+LEMLKDRG+++P+S+I+ +L +FR YGQ PD
Sbjct: 17 ETLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPD 76
Query: 283 IDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNP 462
+DRLR S H +D + ++LVIFC VKV +R I QI+N+ +L+ LILV+Q+QMTN
Sbjct: 77 VDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQ 136
Query: 463 AMKAVELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQ 642
A KAVEL FKVEIFQITDLL+NITK +L+P+H +L D PRMS+
Sbjct: 137 AQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSK 196
Query: 643 KDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
DAIARYYGLEKGQVVK+ YS I ++++TYRCVW
Sbjct: 197 NDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231
>gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 251 bits (641), Expect = 4e-64
Identities = 128/241 (53%), Positives = 172/241 (71%), Gaps = 1/241 (0%)
Frame = +1
Query: 28 QIGQTKTT*FSSMDLNNG-LAMDVDFENFGTCLTSFIDDGTVESHRYFLARRTMLEMLKD 204
Q G T+T ++M++ NG + + CL + D+G++ESHRY+L+RRT+LEMLKD
Sbjct: 9 QNGTTETA-ITTMEIENGDITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLKD 67
Query: 205 RGFAIPNSEIDTTLLEFRAKYGQRPDIDRLRISAMHRTDLTNKVLVIFCGQTAVKVNVIR 384
RG++IP+ EI +L +FR +GQ PD+DRLR++A H T+ + ++LV+F G VKVN +R
Sbjct: 68 RGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVR 127
Query: 385 SILTQIMNKESLSRLILVIQNQMTNPAMKAVELCSFKVEIFQITDLLVNITKQVLKPRHE 564
I QI+N+ESL+ LIL++QNQ+T+ A+KAV L SFKVEI QITDLLVN TK VLKP+H+
Sbjct: 128 DIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVLKPKHQ 187
Query: 565 LLNDAXXXXXXXXXXXXXXXXPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCV 744
+L D PRM Q DAIARYYGL++GQVVKVTY+ EI + HVTYRCV
Sbjct: 188 VLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 247
Query: 745 W 747
W
Sbjct: 248 W 248
>ref|NP_191267.1| DNA-directed RNA polymerase V subunit 5A [Arabidopsis thaliana]
gi|75264560|sp|Q9M1J2.1|RPE5A_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 5A
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis
thaliana] gi|26452919|dbj|BAC43537.1| unknown protein
[Arabidopsis thaliana] gi|28973011|gb|AAO63830.1|
unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit
family protein [Arabidopsis thaliana]
Length = 222
Score = 248 bits (634), Expect = 3e-63
Identities = 118/210 (56%), Positives = 159/210 (75%)
Frame = +1
Query: 118 CLTSFIDDGTVESHRYFLARRTMLEMLKDRGFAIPNSEIDTTLLEFRAKYGQRPDIDRLR 297
CL+ ++D + ESHRY+LARR L+ML+DRG+ + + +I+ +L +FR YG+RPD+DRLR
Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72
Query: 298 ISAMHRTDLTNKVLVIFCGQTAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAV 477
ISA+HR+D T KV ++F G + VKVN IRS++ I+++E+++ LILV+QN +TN A+KA+
Sbjct: 73 ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132
Query: 478 ELCSFKVEIFQITDLLVNITKQVLKPRHELLNDAXXXXXXXXXXXXXXXXPRMSQKDAIA 657
EL SFKVEIFQITDLLVNITK LKP+H++LND PR+S+KDAI
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192
Query: 658 RYYGLEKGQVVKVTYSSEIIETHVTYRCVW 747
RYYGLEKGQVVKV Y E+ E+HV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222