BLASTX nr result
ID: Atropa21_contig00005786
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00005786
(680 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom... 263 3e-68
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g... 262 8e-68
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 143 6e-32
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] 140 3e-31
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 140 4e-31
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 137 3e-30
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica] 137 4e-30
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila] 133 4e-29
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35] 133 6e-29
dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana] 133 6e-29
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa] 133 6e-29
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis] 132 1e-28
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana] 130 4e-28
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea] 130 4e-28
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 122 8e-26
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca... 122 1e-25
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 122 1e-25
gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [The... 111 2e-22
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ... 110 5e-22
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr... 108 1e-21
>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
tuberosum]
Length = 905
Score = 263 bits (673), Expect = 3e-68
Identities = 147/209 (70%), Positives = 159/209 (76%), Gaps = 5/209 (2%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SPAPNSRPSSS GNQAKNVNQQSNIAPKESKQA+EPKSEPND+ EDSEDDKPLS+R+PSG
Sbjct: 120 SPAPNSRPSSSAGNQAKNVNQQSNIAPKESKQAIEPKSEPNDEAEDSEDDKPLSARVPSG 179
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
LSKS SIHAN V GTS SVQK+RPPKKEDS DEIPLASRFQMKS+AGASTSK S+SEEVK
Sbjct: 180 LSKSNSIHANNVLGTSTSVQKSRPPKKEDSDDEIPLASRFQMKSSAGASTSKFSSSEEVK 239
Query: 322 PKIQQNGLPSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSVKXXXXXXXXXX 143
PKI+QNGLPS TVLSKRPPGEV + +K SVK
Sbjct: 240 PKIRQNGLPSATVLSKRPPGEVSLLLRLQLKSLDFLMHLHLFLVSNXSVKTEKKTEDDDD 299
Query: 142 DVPISQRIKKPV----TSTSKVSFAKKAT 68
+VP+SQRIKK V S SKVS KKAT
Sbjct: 300 EVPLSQRIKKAVASASASASKVSSVKKAT 328
>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
topoisomerase I [Nicotiana tabacum]
Length = 852
Score = 262 bits (669), Expect = 8e-68
Identities = 145/205 (70%), Positives = 158/205 (77%), Gaps = 1/205 (0%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SPAPNSRPS+S GNQAK+VNQQS I P E KQAVEPKSEPND+ EDSEDDKPLS+R+ SG
Sbjct: 97 SPAPNSRPSASAGNQAKDVNQQSKIVPNEPKQAVEPKSEPNDEAEDSEDDKPLSARLSSG 156
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
LSKS S HANKV GTSASVQK+RPPKKEDS DEIPLASRFQ+KSNAGASTSK SNSEEVK
Sbjct: 157 LSKSNSSHANKVLGTSASVQKSRPPKKEDSDDEIPLASRFQLKSNAGASTSKSSNSEEVK 216
Query: 322 PKIQQNGLPSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSVKXXXXXXXXXX 143
PKI+QNGLPSTTVLSKRPPG+V + +K + SVK
Sbjct: 217 PKIRQNGLPSTTVLSKRPPGDVSLLLRLQLKSLGFLMHLHLFRVSEASVKPEKKTEDDDD 276
Query: 142 DVPISQRIKKPVTSTSKVSFAKKAT 68
DVPISQRIKK V S SK+S AKKAT
Sbjct: 277 DVPISQRIKKSVASASKLSSAKKAT 301
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 143 bits (360), Expect = 6e-32
Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 16/218 (7%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNI-APKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPS 503
SP N + SSS +++K+ ++Q+ I KE K+ V P +EP D SED+KPLS+R+ +
Sbjct: 96 SPVANPKVSSSSDDRSKHSSKQNTINVVKEEKELVNPAAEPYGD---SEDEKPLSARLFT 152
Query: 502 GLSKSYSIHANK--VPGTSASVQKARPP----KKEDSDEIPLASRFQMKSNAGASTSKLS 341
GL+K S +ANK + + AS+ +P + DEIPL+S+F++K+NAG ST K
Sbjct: 153 GLTKGSSNNANKGLINSSPASLPVPKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSY 212
Query: 340 NSEEVKPKI---QQNGL-----PSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQ 185
S++ K + QQNG S+ ++KRP GEVKS+ Q+SVKKP+LSDASTPV++KQ
Sbjct: 213 ESDDNKTLVSNFQQNGSINRGSKSSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQ 272
Query: 184 TSVK-XXXXXXXXXXDVPISQRIKKPVTSTSKVSFAKK 74
S K VPISQR+KK TS +K S AK+
Sbjct: 273 ASKKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQ 310
>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 140 bits (354), Expect = 3e-31
Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+PS+S + AK N + A + P ++ N ++E S+D+KPLS+R
Sbjct: 103 SPGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGC 162
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 163 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKK 222
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KRPPGE KS Q+SVKKP+LS T +S+KQ +V
Sbjct: 223 PLAAKVQQNGSASRDGPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAV 282
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK ++TSK
Sbjct: 283 KPEPKAEDDDDNIPLSQRGKKSQSATSK 310
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 140 bits (353), Expect = 4e-31
Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+PS+S + AK N + A + P ++ N ++E S+D+KPLS+R
Sbjct: 104 SPGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+Q NG S ++ +KRPPGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+TSK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTATSK 311
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 137 bits (345), Expect = 3e-30
Identities = 87/208 (41%), Positives = 121/208 (58%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
S NS+PS+S + AK N + A + P ++ N ++E S+D+KPLS+R
Sbjct: 104 SAGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+Q NG S ++ +KRPPGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+TSK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTATSK 311
>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 137 bits (344), Expect = 4e-30
Identities = 89/210 (42%), Positives = 122/210 (58%), Gaps = 14/210 (6%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+PS+S + AK N + A + P ++ N ++E S+D+KPLS+R
Sbjct: 103 SPGANSKPSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGC 162
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 163 SSKGKSNHANKEGGDSCSIRRRVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKK 222
Query: 322 P---KIQQNGL--------PSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KRPPGEVKS Q+SVKKP+LS T +S+KQ +V
Sbjct: 223 PLAAKVQQNGSVSRDGPMNKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAV 282
Query: 175 K--XXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK +TSK
Sbjct: 283 KPEPEPKAEDDDDNIPLSQRGKKSQAATSK 312
>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
Length = 926
Score = 133 bits (335), Expect = 4e-29
Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSHDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSTITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 133 bits (334), Expect = 6e-29
Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
Length = 920
Score = 133 bits (334), Expect = 6e-29
Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 133 bits (334), Expect = 6e-29
Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
Length = 926
Score = 132 bits (331), Expect = 1e-28
Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++L+KR PGEVKS Q+S+KK +LS T +S+KQ +V
Sbjct: 224 PLATKVQQNGSASRDGPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 130 bits (327), Expect = 4e-28
Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
S S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSMGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+QQNG S ++ +KR PGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQQNGSASPEGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 130 bits (327), Expect = 4e-28
Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 12/208 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSG 500
SP NS+ S+S + AK N + A + P ++ N ++E S+D+KPL +R
Sbjct: 104 SPGANSKLSASATSTAKQQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGC 163
Query: 499 LSKSYSIHANKVPGTSASVQKARPPKKEDS-DEIPLASRFQMKSNAGASTSKLSNSEEVK 323
SK S HANK G S S+++ + EDS DE PL+ RF KS+ G STSK +S+E K
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 322 P---KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
P K+Q NG S ++ +KR PGEVKS Q+S+KKP+LS T +S+KQ +V
Sbjct: 224 PLAAKVQPNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSK 92
K ++P+SQR KK T+ SK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASK 311
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 122 bits (307), Expect = 8e-26
Identities = 84/214 (39%), Positives = 118/214 (55%), Gaps = 14/214 (6%)
Frame = -2
Query: 667 NSRPSSSVGNQAKNVNQQSN--IAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSGLS 494
NS+PS+S + K NQ + + +E + S +D+EDS+D KPLS R + S
Sbjct: 122 NSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSASSS 181
Query: 493 KSYSIHANKVPGTSASVQKARPPKKEDSDEIPLASRFQMKSNAGASTSKLSNSEEVKP-- 320
K + N+V S + ++P ++ DE PL+SRF +KS G STSK +S++ KP
Sbjct: 182 KG---NTNQV-----SKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPLA 233
Query: 319 -KIQQNGLPS--------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSVK-X 170
K+Q NG + + +KRPPG++KS+ Q SVKKP+LS + P + KQ SVK
Sbjct: 234 KKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKPE 293
Query: 169 XXXXXXXXXDVPISQRIKKPVTSTSKVSFAKKAT 68
+PISQRIKK TS SK S KK T
Sbjct: 294 PKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTT 327
>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
isoform 3 [Theobroma cacao]
Length = 836
Score = 122 bits (306), Expect = 1e-25
Identities = 85/223 (38%), Positives = 120/223 (53%), Gaps = 19/223 (8%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKN-VNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPS 503
SP N + S+S+ +Q+K + Q A KE + ++ +EPN D +D +D PLS+R+
Sbjct: 105 SPVVNFKASTSLNDQSKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARL-- 162
Query: 502 GLSKSYSIHANKVPGTSASVQKAR-PPKKE-------DSDEIPLASRFQMKSNAGASTSK 347
K S NK TSA Q R PK E DE PL++RF +KSN G S+S+
Sbjct: 163 ---KGISNQGNKGASTSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSR 219
Query: 346 LSNSEEVKP---KIQQNG-------LPSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPV 197
L + +E KP KIQQNG S+T+ KRP + S+ +S KKP+ SDA T +
Sbjct: 220 LHDCDEKKPLASKIQQNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTM 279
Query: 196 SSKQTSVKXXXXXXXXXXDVPISQRIKKPVTSTSKVSFAKKAT 68
+KQ +VK +PI+QR+KK S SK+S K+ T
Sbjct: 280 KTKQVTVK-AEKADEDDDHMPIAQRMKKSTASNSKLSSMKQKT 321
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 122 bits (306), Expect = 1e-25
Identities = 85/223 (38%), Positives = 120/223 (53%), Gaps = 19/223 (8%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKN-VNQQSNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPS 503
SP N + S+S+ +Q+K + Q A KE + ++ +EPN D +D +D PLS+R+
Sbjct: 105 SPVVNFKASTSLNDQSKQALKQNMTTAVKEGRSPIKGTTEPNSDDDDDDDSLPLSARL-- 162
Query: 502 GLSKSYSIHANKVPGTSASVQKAR-PPKKE-------DSDEIPLASRFQMKSNAGASTSK 347
K S NK TSA Q R PK E DE PL++RF +KSN G S+S+
Sbjct: 163 ---KGISNQGNKGASTSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSR 219
Query: 346 LSNSEEVKP---KIQQNG-------LPSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPV 197
L + +E KP KIQQNG S+T+ KRP + S+ +S KKP+ SDA T +
Sbjct: 220 LHDCDEKKPLASKIQQNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTM 279
Query: 196 SSKQTSVKXXXXXXXXXXDVPISQRIKKPVTSTSKVSFAKKAT 68
+KQ +VK +PI+QR+KK S SK+S K+ T
Sbjct: 280 KTKQVTVK-AEKADEDDDHMPIAQRMKKSTASNSKLSSMKQKT 321
>gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
Length = 733
Score = 111 bits (278), Expect = 2e-22
Identities = 77/197 (39%), Positives = 106/197 (53%), Gaps = 18/197 (9%)
Frame = -2
Query: 604 APKESKQAVEPKSEPNDDTEDSEDDKPLSSRIPSGLSKSYSIHANKVPGTSASVQKAR-P 428
A KE + ++ +EPN D +D +D PLS+R+ K S NK TSA Q R
Sbjct: 4 AVKEGRSPIKGTTEPNSDDDDDDDSLPLSARL-----KGISNQGNKGASTSAPAQSRRLV 58
Query: 427 PKKE-------DSDEIPLASRFQMKSNAGASTSKLSNSEEVKP---KIQQNG-------L 299
PK E DE PL++RF +KSN G S+S+L + +E KP KIQQNG
Sbjct: 59 PKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQ 118
Query: 298 PSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSVKXXXXXXXXXXDVPISQRI 119
S+T+ KRP + S+ +S KKP+ SDA T + +KQ +VK +PI+QR+
Sbjct: 119 NSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVK-AEKADEDDDHMPIAQRM 177
Query: 118 KKPVTSTSKVSFAKKAT 68
KK S SK+S K+ T
Sbjct: 178 KKSTASNSKLSSMKQKT 194
>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
putative [Ricinus communis]
Length = 891
Score = 110 bits (274), Expect = 5e-22
Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 19/221 (8%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQ---------SNIAPKESKQAVEPKSEPNDDTEDSEDDK 527
SP NS+ SSS+ Q K ++Q S+ P+ ++V+ +++ N D EDSEDD
Sbjct: 97 SPVANSKGSSSLDEQLKQASKQNASNVVKDVSSAKPEIGLKSVKHETKSNGDDEDSEDDL 156
Query: 526 PLSSRIPSGLSKSYSIHANKVPGTSASVQKARPPKKEDSDEIPLASRFQMKSNAGASTSK 347
PLS+R K + + +KV + K + D D++PL SRF MKS AG S +K
Sbjct: 157 PLSAR-----RKGNTNNVSKV----VTAPKRVKDEDSDDDKVPLCSRFPMKSTAGTSGNK 207
Query: 346 LSNSEEVKP---KIQQNGLPS-------TTVLSKRPPGEVKSAAQTSVKKPRLSDASTPV 197
+N E KP K+QQNG S + +KRP + S+ Q+S+KKP+LS ST
Sbjct: 208 PNNISEKKPLPSKVQQNGSTSKDKQQKAPLIPTKRPLDKANSSEQSSIKKPKLSAGSTIT 267
Query: 196 SSKQTSVKXXXXXXXXXXDVPISQRIKKPVTSTSKVSFAKK 74
KQ +VK D+PI+QR K +S SK+S AK+
Sbjct: 268 KVKQATVK---AEEDDPDDIPIAQRKKSLGSSESKLSSAKQ 305
>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 877
Score = 108 bits (271), Expect = 1e-21
Identities = 86/214 (40%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Frame = -2
Query: 679 SPAPNSRPSSSVGNQAKNVNQQ--SNIAPKESKQAVEPKSEPNDDTEDSEDDKPLSSRIP 506
SP +R +S +Q K ++Q SN +E+K V D EDSEDDKPLSSRI
Sbjct: 97 SPLTYTRALTSSNDQLKQASKQVVSNAVKEETKSIV--------DDEDSEDDKPLSSRI- 147
Query: 505 SGLSKSYSIHANKVPGTSASVQKARPPKKEDSDEIPLASRFQMKSNAGASTSKLSNSEEV 326
K + + NK G +A P D DE+PL+SRF MKSNAG S+SK S E+
Sbjct: 148 ----KGSTNNVNK--GVTAPAHVKDEPS--DDDEVPLSSRFAMKSNAGTSSSKSIRSSEI 199
Query: 325 KP---KIQQNG-------LPSTTVLSKRPPGEVKSAAQTSVKKPRLSDASTPVSSKQTSV 176
+P K Q NG S+ V +KRP + +S KKP+L DA T KQ +V
Sbjct: 200 RPFPSKSQLNGSTKNDKQQKSSVVPTKRPMDNKVPSNHSSAKKPKLLDACTTTKVKQVTV 259
Query: 175 KXXXXXXXXXXDVPISQRIKKPVTSTSKVSFAKK 74
K + ISQR+KK +S +K SFAKK
Sbjct: 260 K-VEQKADDDDHLTISQRMKKADSSANKSSFAKK 292