BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00005641
         (3199 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  1285   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  1281   0.0  
gb|EPS67076.1| hypothetical protein M569_07699, partial [Genlise...  1188   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1177   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  1164   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1162   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1162   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  1160   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  1155   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  1154   0.0  
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...  1153   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  1150   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  1147   0.0  
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...  1144   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  1144   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  1144   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  1144   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  1144   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  1144   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  1143   0.0  

>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 1285 bits (3324), Expect = 0.0
 Identities = 643/653 (98%), Positives = 650/653 (99%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIETQKLDSLKAKK  FDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE
Sbjct: 883  QFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP
Sbjct: 943  IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE+VDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAF+
Sbjct: 1003 MEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W+VGEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI
Sbjct: 1123 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDEEIDPDK+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKIASNMLTEMALRGIPDINKVF 936
            CIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKI SNMLTEMALRGIPDINKVF
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVF 1302

Query: 935  IKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEA 756
            IKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEA
Sbjct: 1303 IKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEA 1362

Query: 755  VRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 576
            VRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE
Sbjct: 1363 VRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1422

Query: 575  ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYME 396
            ETVDILLDAAVFAESD+LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYME
Sbjct: 1423 ETVDILLDAAVFAESDHLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYME 1482

Query: 395  GGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            GGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF
Sbjct: 1483 GGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535



 Score =  661 bits (1706), Expect = 0.0
 Identities = 326/329 (99%), Positives = 327/329 (99%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWT
Sbjct: 527  PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKA 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            KVKELIKAAQEK LEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT
Sbjct: 707  KVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 1281 bits (3315), Expect = 0.0
 Identities = 641/653 (98%), Positives = 649/653 (99%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIETQKLDSLKAKK  FDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE
Sbjct: 883  QFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP
Sbjct: 943  IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE+VDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAF+
Sbjct: 1003 MEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W+VGEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI
Sbjct: 1123 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDEEIDPDK+SPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKIASNMLTEMALRGIPDINKVF 936
            CIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKI SNMLTEMALRGIPDINKVF
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVF 1302

Query: 935  IKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEA 756
            IKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEA
Sbjct: 1303 IKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEA 1362

Query: 755  VRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 576
            VRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE
Sbjct: 1363 VRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1422

Query: 575  ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYME 396
            ETVDILLDAAVFAESD+LRGVTENIMLGQLAPIGTG CSLYLNEEMLKQAIEIPLPSYME
Sbjct: 1423 ETVDILLDAAVFAESDHLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYME 1482

Query: 395  GGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            GGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF
Sbjct: 1483 GGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535



 Score =  661 bits (1706), Expect = 0.0
 Identities = 326/329 (99%), Positives = 327/329 (99%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWT
Sbjct: 527  PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKA 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            KVKELIKAAQEK LEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT
Sbjct: 707  KVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>gb|EPS67076.1| hypothetical protein M569_07699, partial [Genlisea aurea]
          Length = 1171

 Score = 1188 bits (3074), Expect = 0.0
 Identities = 587/654 (89%), Positives = 628/654 (96%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+Q L+SLK KK+ F+DMY +E DDPNWNP+YMLPEA+ED+K I E
Sbjct: 236  QFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRFEFDDPNWNPNYMLPEAIEDVKIIHE 295

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            +RSVFDAEVQKLE DR QLGTEIA +GDNSWPLPVNI+RLVLNAQKTFK+DFRRPSD++P
Sbjct: 296  VRSVFDAEVQKLETDRLQLGTEIATSGDNSWPLPVNIRRLVLNAQKTFKVDFRRPSDIYP 355

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE+VDKLQERLKVV GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRL+REAFD
Sbjct: 356  MEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFD 415

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 416  WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 475

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYL  E  KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 476  IINVAKKIKTPSLSVYLNAEASKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTII 535

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EED+EFVKSYYEMPDEEIDPDK+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 536  EEDIEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 595

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 596  CIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKV 655

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIKNSKV +FD+ +GFKAENEWMLDTEGVNLLAV+ H DVD+ RTTSNHLIEVIEVLGIE
Sbjct: 656  FIKNSKVNRFDEIDGFKAENEWMLDTEGVNLLAVLCHPDVDSKRTTSNHLIEVIEVLGIE 715

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 716  AVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 775

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D+L+GVTENIMLGQLAPIGTG C+LYLNEEMLKQAIEIPLPSY 
Sbjct: 776  EETVDILLDAAVYAETDHLKGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYY 835

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            +GGL+FGMTPGRSP++GTPYHDGMMSP+YLLSPN R+SP+TDAQFSPYVGGMAF
Sbjct: 836  DGGLDFGMTPGRSPLTGTPYHDGMMSPSYLLSPNHRLSPVTDAQFSPYVGGMAF 889



 Score =  395 bits (1014), Expect = e-107
 Identities = 196/208 (94%), Positives = 202/208 (97%)
 Frame = -1

Query: 2836 IHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKSK 2657
            I+   EEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA+TMEKINETISNAK++
Sbjct: 1    INTFREEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNQ 60

Query: 2656 VKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTA 2477
            VKELI+ AQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTA
Sbjct: 61   VKELIRGAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 120

Query: 2476 GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 2297
            GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 121  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 180

Query: 2296 PQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            PQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 181  PQEFFFHAMGGREGLIDTAVKTSETGYI 208


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 1177 bits (3046), Expect = 0.0
 Identities = 586/654 (89%), Positives = 622/654 (95%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIETQKLDSLK KK  FD ++ YEIDD NWNPSYMLPE VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VFDAEVQKLEADR QLGTEIA TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHP
Sbjct: 943  FRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE+VDKLQERLKVVPGDD +SMEAQKNATLFFNILLRS  ASKRVLKEYRL+REAF+
Sbjct: 1003 MEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLKP+V KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 1123 IINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDV+FVKSYYEMPDEE+ P+K+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 1183 EEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK+ KV KFD++EGFK E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKSGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C+LYLN++ML+ AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GL+FGMTP RSPI+GTPYHDGMMSPNYLLSPN+R+SPITDAQFSPYVGGMAF
Sbjct: 1483 E-GLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535



 Score =  639 bits (1647), Expect = e-180
 Identities = 310/329 (94%), Positives = 324/329 (98%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINLLR SAWH++SE G+ITPGDTQVRIEKGELL+GTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VKELI+AAQE+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 707  EVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 1164 bits (3011), Expect = 0.0
 Identities = 577/654 (88%), Positives = 618/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK+ FD  ++YE+DD NWNP YML E VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VFDAEVQKLE DR QLGTEIAVTGDNSWPLPVN++RL+ NAQKTFKIDFRR SDMHP
Sbjct: 943  FRNVFDAEVQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPGDD LS+EAQKNATLFF+ILLRS  ASKRVL EYRL+REAF+
Sbjct: 1003 MEIVEAIDKLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSVYLKPE  KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 1123 IINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDV+FV SYYEMPDEE++PDK+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 1183 EEDVDFVNSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMN EAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNAEKLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK+ KV KFD NEGFKAE EWMLDTEGVNLLAV+ H+DVDA RTTSNHLIE++E+LGIE
Sbjct: 1303 FIKHGKVNKFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAVFAE+DYLRGVTENIMLGQLAPIGTG C+LYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSP+SGTPYH+GMMSPNYLLSPN+R+SPI+DAQFSPYVGGMAF
Sbjct: 1483 D-GLDFGMTPSRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535



 Score =  622 bits (1605), Expect = e-175
 Identities = 303/329 (92%), Positives = 318/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R SAWH+++E G ITPGDT VRIEKGELL+GTLCKK LGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VK+LI  AQ KQLEAEPGRTMM+SFEN+VNQVLN+ARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 707  EVKDLISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1162 bits (3006), Expect = 0.0
 Identities = 577/654 (88%), Positives = 621/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK  F+ ++ YE +D NW P+YMLPE VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR+QLGTEIA TG+NSWP+PVN++RL+ NAQKTFKIDFRR SDMHP
Sbjct: 943  FRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVL EYRL+REAF+
Sbjct: 1003 MEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSVYLKPE  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 1123 IINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EED++FVKSYYEMPDEEI P+K+SPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLT
Sbjct: 1183 EEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  KV KFD+NEGFK E EWMLDTEGVNLLAVMTHEDVDA RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTGGC+LYLN+EMLK AIE+ LPSY+
Sbjct: 1423 EETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYI 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSPISGTPYH+GMMSPNYLLSPN+R+SPI+DAQFSPYVGGMAF
Sbjct: 1483 D-GLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535



 Score =  620 bits (1598), Expect = e-174
 Identities = 302/329 (91%), Positives = 316/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R SAWH++SE G+ITPGDT VRIEKGELLSGTLCKK LGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VK LIK AQE+ LE EPGRTMM+SFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 707  EVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1162 bits (3006), Expect = 0.0
 Identities = 577/654 (88%), Positives = 621/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK  F+ ++ YE +D NW P+YMLPE VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR+QLGTEIA TG+NSWP+PVN++RL+ NAQKTFKIDFRR SDMHP
Sbjct: 943  FRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVL EYRL+REAF+
Sbjct: 1003 MEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSVYLKPE  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 1123 IINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EED++FVKSYYEMPDEEI P+K+SPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLT
Sbjct: 1183 EEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  KV KFD+NEGFK E EWMLDTEGVNLLAVMTHEDVDA RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTGGC+LYLN+EMLK AIE+ LPSY+
Sbjct: 1423 EETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYI 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSPISGTPYH+GMMSPNYLLSPN+R+SPI+DAQFSPYVGGMAF
Sbjct: 1483 D-GLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535



 Score =  620 bits (1598), Expect = e-174
 Identities = 302/329 (91%), Positives = 316/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R SAWH++SE G+ITPGDT VRIEKGELLSGTLCKK LGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VK LIK AQE+ LE EPGRTMM+SFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 707  EVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 1160 bits (3001), Expect = 0.0
 Identities = 572/654 (87%), Positives = 622/654 (95%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIE+QKLDSLK KKT F+ ++ YE D+  WNP+YMLPE VEDLK IRE
Sbjct: 898  QFLYGEDGMDSVWIESQKLDSLKMKKTEFERVFRYEFDNETWNPTYMLPEHVEDLKTIRE 957

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VFDAEVQKLE+DR QLGTEIA TGDNSWPLPVN++RL+ NAQKTFKIDFRR SDMHP
Sbjct: 958  FRNVFDAEVQKLESDRLQLGTEIATTGDNSWPLPVNLKRLIQNAQKTFKIDFRRTSDMHP 1017

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVL+EYRL+RE F+
Sbjct: 1018 MEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREGFE 1077

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1078 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1137

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSV+LKPE  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 1138 IINVAKRIKTPSLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTII 1197

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            +EDV+FV+SYYEMPDEEI+PDK+SPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLT
Sbjct: 1198 DEDVDFVRSYYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLT 1257

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKG+L DE+AEDDVFLKKI SNMLTEM+LRGIPDINKV
Sbjct: 1258 CIFNDDNAEKLILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNMLTEMSLRGIPDINKV 1317

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK+ KV KFD+N+GFK ENEWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIE
Sbjct: 1318 FIKHGKVNKFDENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIE 1377

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1378 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1437

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+DYLRGVTENIMLGQLAPIGTGGC+LYLN+EMLK AIE+ LPSYM
Sbjct: 1438 EETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYM 1497

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSP+SGTPYH+GMMSP YLLSPN+R+SPI+DAQFSPYVGGMAF
Sbjct: 1498 D-GLDFGMTPSRSPVSGTPYHEGMMSPGYLLSPNLRLSPISDAQFSPYVGGMAF 1550



 Score =  629 bits (1622), Expect = e-177
 Identities = 308/329 (93%), Positives = 318/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT
Sbjct: 542  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 601

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R SAWH +SE GYITPGDT VRIEKGELLSGTLCKKTLGTS+GS
Sbjct: 602  GKQVFNLIIPKQINLNRTSAWHAESESGYITPGDTLVRIEKGELLSGTLCKKTLGTSSGS 661

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADASTMEKINETIS AK+
Sbjct: 662  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISRAKN 721

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
             VKELI+ AQ K+LEAEPGRTMMESFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 722  DVKELIRKAQAKELEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 781

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 782  AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 841

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 842  TPQEFFFHAMGGREGLIDTAVKTSETGYI 870


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 1155 bits (2987), Expect = 0.0
 Identities = 573/654 (87%), Positives = 614/654 (93%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK  FD  +AY  DD NWNP YMLPE VEDLK IRE
Sbjct: 881  QFLYGEDGMDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIRE 940

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VFDAEV KLE DR QLGTEIAVTGDNSWPLPVN++RL+ NAQKTFKIDFRR SDMHP
Sbjct: 941  FRNVFDAEVSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHP 1000

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERL+VVPGDD LS+EAQKNATLFFNILLRS  ASKRVL+EYRL+REAF+
Sbjct: 1001 MEIVEAIDKLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFE 1060

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1061 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1120

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSVYLKPE  KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTLI
Sbjct: 1121 IINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1180

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EED++FV+SYYEMPDEE++PDK+SPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLT
Sbjct: 1181 EEDLDFVRSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLT 1240

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGE-LDESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMN+E PKG+  DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1241 CIFNDDNAEKLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1300

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK+ KV KFD NEGFKAE EWMLDTEGVNLLAV+ H+DVDA RTTSNHLIE+IEVLGIE
Sbjct: 1301 FIKHGKVNKFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIE 1360

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1361 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1420

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDA+VFAE+D+LRGVTENIMLGQLAPIGTG C+LYLN+EMLK AIE+ LPSY+
Sbjct: 1421 EETVDILLDASVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYV 1480

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSP+SGTP+ DGMMSPNYLLSPNMRMSPI+DAQFSPYVGGMAF
Sbjct: 1481 D-GLDFGMTPSRSPVSGTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533



 Score =  623 bits (1606), Expect = e-175
 Identities = 304/329 (92%), Positives = 316/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT
Sbjct: 525  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 584

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R SAWH++SE G ITPGDT VRIEKGELLSGTLCKK LGTSTGS
Sbjct: 585  GKQVFNLIIPKQINLQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGS 644

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 645  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKN 704

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VKELI  AQ K LE EPGRTMM+SFEN+VNQVLN+ARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 705  EVKELISKAQSKSLEPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVT 764

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 765  AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 824

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 825  TPQEFFFHAMGGREGLIDTAVKTSETGYI 853


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 1154 bits (2986), Expect = 0.0
 Identities = 568/654 (86%), Positives = 618/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK  FD ++ YE+DD NW P+YMLPE VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR QLGTEIA TGDN+WP+PVN++RL+ NAQKTFKID RRPSDMHP
Sbjct: 943  FRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPGDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRL++EAF+
Sbjct: 1003 MEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLKPEV K KE AK VQCALEYTTLRSVT ATE+WYDPDP+ T+I
Sbjct: 1123 IINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFV+SYYEMPDE++DPDK+SPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+
Sbjct: 1183 EEDVEFVRSYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLS 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILR+RI NDEAPKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  KV KF+DN+GFK +NEWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKYGKVNKFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AESDYLRGVTENIMLGQLAPIGTGGC+LYLN++ML+QAIE+ LPSY+
Sbjct: 1423 EETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYV 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GL+FGMTP RSPISGTPYH+GMMSP+YLLSPN+R SPITDAQFSPYVGGMAF
Sbjct: 1483 E-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535



 Score =  629 bits (1623), Expect = e-177
 Identities = 305/329 (92%), Positives = 319/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDT IEKDVFMNILMWWEDFDGKVPAPAILKPRP+WT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPK INL+R+SAWH+++E G+ITPGDT VRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VKELIK A +K LEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 707  EVKELIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score = 1153 bits (2983), Expect = 0.0
 Identities = 568/654 (86%), Positives = 619/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK  FD+++ YE+DD NW P+YMLPE V+DLK IRE
Sbjct: 554  QFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIRE 613

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR QLG+EIA TGDN+WP+PVN++RL+ NAQKTFKID RRPSDMHP
Sbjct: 614  FRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHP 673

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPGDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRL++EAF+
Sbjct: 674  MEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFE 733

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 734  WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 793

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLKPEV K KE AK VQCALEYTTLRSVT ATE+WYDPDP+ T+I
Sbjct: 794  IINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTII 853

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFV+SYYEMPDE+IDPDK+SPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+
Sbjct: 854  EEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLS 913

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILR+RI NDEAPKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 914  CIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKV 973

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  KV KF+DN GFKA+NEWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIE
Sbjct: 974  FIKYGKVNKFEDNVGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIE 1033

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSF
Sbjct: 1034 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSF 1093

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AESDYLRGVTENIMLGQLAPIGTGGC+LYLN++ML+QAIE+ LPSY+
Sbjct: 1094 EETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYV 1153

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GL+FGMTP RSPISGTPYH+GMMSP+YLLSPN+R SPITDAQFSPYVGGMAF
Sbjct: 1154 E-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1206



 Score =  234 bits (596), Expect = 2e-58
 Identities = 115/118 (97%), Positives = 117/118 (99%)
 Frame = -1

Query: 2566 QVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 2387
            +VLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF
Sbjct: 409  KVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 468

Query: 2386 IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE LIDTAVKTSETGYI
Sbjct: 469  IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRESLIDTAVKTSETGYI 526


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 1150 bits (2976), Expect = 0.0
 Identities = 570/654 (87%), Positives = 620/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK K+  F+++Y YEID  NW+PSYMLPE VEDLK IRE
Sbjct: 886  QFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIRE 945

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             ++VFDAEVQKLEADRHQLGTEI  TGDNSWP+PVN++RL+ NAQK FK+D RRPSDMHP
Sbjct: 946  FQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHP 1005

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE+VDKLQERLKVVPGDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRL+REAFD
Sbjct: 1006 MEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFD 1065

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1066 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1125

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLK EV KTKE+AK VQCALEYTTLRSVT+ATEVWYDPDPMST+I
Sbjct: 1126 IINVAKKIKTPSLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTII 1185

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDV+FV+SYYEMPDEE+ P+K+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 1186 EEDVDFVRSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1245

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGEL DES+EDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1246 CIFNDDNAEKLILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKV 1305

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK+ K+ KFD+NEGFK E EWMLDTEGVNLLAVM +E+VDA+RTTSNHLIEVI+VLGIE
Sbjct: 1306 FIKSGKINKFDENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIE 1365

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1366 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1425

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C+LYLN++ML+QAIE+ LPSYM
Sbjct: 1426 EETVDILLDAAVYAEADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYM 1485

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E G++FGMTP RSP++GTPYH+GMMSP YLLSPNMR SPITDAQFSPYVGGMAF
Sbjct: 1486 E-GMDFGMTPSRSPMTGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537



 Score =  641 bits (1654), Expect = 0.0
 Identities = 312/329 (94%), Positives = 325/329 (98%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWT
Sbjct: 530  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWT 589

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL+RYSAWH++SE G+ITPGDT VRIE+GELLSGTLCKKTLGTS+GS
Sbjct: 590  GKQVFNLIIPKQINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGS 649

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 650  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKN 709

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 710  EVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 769

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGF DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 770  AGSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGL 829

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 830  TPQEFFFHAMGGREGLIDTAVKTSETGYI 858


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 570/654 (87%), Positives = 616/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIETQKLDSLK KKT FD ++ YE DD NW P+YML E VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR+QL TEIA TGD+S PLPVN++RL+ NAQKTFK+DFRRPSDMHP
Sbjct: 943  FRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPG+D LS EAQKNATL FNILLRS  ASKRVL+EYRLSREAF+
Sbjct: 1003 MEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W+VGEIE+RFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSVYL+ +VGKTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMST+I
Sbjct: 1123 IINVAKRIKTPSLSVYLRSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EED +FVKSYYEMPDEE+  +K+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 1183 EEDADFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGE+ DESAEDDVFLKKI SNMLTEM LRGIPDINKV
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIKN+KVQKFD+N+GFK   EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKNTKVQKFDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+DYLRGVTENIMLGQLAPIGTG C+LYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSPISGTPYH+G+MSP+YLLSPN+R+SP +DAQFSPYVGGMAF
Sbjct: 1483 D-GLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535



 Score =  625 bits (1611), Expect = e-176
 Identities = 302/329 (91%), Positives = 319/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL+RYS+WH++SE+G ITPGDT VRIEKGELL+GTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADASTME IN+TIS AK 
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKE 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            KVK+LI+ AQEK+LEAEPGRTMM+SFENRVNQ LN+ARDDAG+SA+KSLSESNNLKAMVT
Sbjct: 707  KVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 1144 bits (2959), Expect = 0.0
 Identities = 568/654 (86%), Positives = 617/654 (94%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIETQKLDSLK KKT FD ++ YE DD NW P+YML E VEDLK IRE
Sbjct: 883  QFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR+QL TEIA TGD+S PLPVN++RL+ NAQKTFK+DFRRPSDMHP
Sbjct: 943  FRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERL+VVPG+D LS EAQKNATL FNILLRS  ASKRVL+EYRLSREAF+
Sbjct: 1003 MEIVEAIDKLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W+VGEIE+RFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAK+IKTPSLSVYL P+VGKTKERAK+VQCALEYTTLRSVTQATEVWYDP+PMST+I
Sbjct: 1123 IINVAKRIKTPSLSVYLNPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            +EDV+FVKSYYEMPDEE+  +K+SPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT
Sbjct: 1183 DEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNAEKLILRIRIMNDEAPKGE+ DESAEDDVFLKKI SNMLTEM LRGIPDINKV
Sbjct: 1243 CIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIKN+KVQKFD++EGFK   EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKNTKVQKFDESEGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C+LYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            + GL+FGMTP RSPISGTPYH+G+MSP+YLLSPN+R+SP +DAQFSPYVGGMAF
Sbjct: 1483 D-GLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535



 Score =  617 bits (1592), Expect = e-174
 Identities = 298/329 (90%), Positives = 315/329 (95%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFI KDVFMN LMWWEDFDGKVP P ILKP PLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPK INL+RYS+WH++SE+G ITPGDT VRIEKGELL+GTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKPINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADASTME IN+TIS AK 
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKE 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            KVK+LI+ AQEK+LEAEPGRTMM+SFENRVNQ LN+ARDDAG+SA+KSLSESNNLKAMVT
Sbjct: 707  KVKQLIRDAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 1144 bits (2958), Expect = 0.0
 Identities = 565/654 (86%), Positives = 613/654 (93%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIE+Q LDSLK KK+ FD  + +E+D+ NWNP+YML E ++DLK I+E
Sbjct: 883  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            +R VFDAEVQKLEADR+QL TEIA +GD+SWPLPVN++RL+ NAQKTFK+D RRPSDMHP
Sbjct: 943  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            ME+VE+VDKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RL+REAF+
Sbjct: 1003 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSV+LKP V  TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM T+I
Sbjct: 1123 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDE+I P+K+SPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  K  K+DDNEGFK+E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIE+IEVLGIE
Sbjct: 1303 FIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG CSLYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GLEFGMTP RSP+SGTPYHDGMMSP YL SPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1483 E-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score =  613 bits (1580), Expect = e-172
 Identities = 298/329 (90%), Positives = 311/329 (94%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R +AWH D++KG +T GDT VRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA TME IN+TIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
             VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AGSSA+KSLSESNNLKAMVT
Sbjct: 707  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 1144 bits (2958), Expect = 0.0
 Identities = 565/654 (86%), Positives = 613/654 (93%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIE+Q LDSLK KK+ FD  + +E+D+ NWNP+YML E ++DLK I+E
Sbjct: 883  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            +R VFDAEVQKLEADR+QL TEIA +GD+SWPLPVN++RL+ NAQKTFK+D RRPSDMHP
Sbjct: 943  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            ME+VE+VDKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RL+REAF+
Sbjct: 1003 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSV+LKP V  TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM T+I
Sbjct: 1123 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDE+I P+K+SPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  K  K+DDNEGFK+E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIE+IEVLGIE
Sbjct: 1303 FIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG CSLYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GLEFGMTP RSP+SGTPYHDGMMSP YL SPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1483 E-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score =  613 bits (1580), Expect = e-172
 Identities = 298/329 (90%), Positives = 311/329 (94%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R +AWH D++KG +T GDT VRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA TME IN+TIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
             VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AGSSA+KSLSESNNLKAMVT
Sbjct: 707  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 1144 bits (2958), Expect = 0.0
 Identities = 565/654 (86%), Positives = 613/654 (93%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIE+Q LDSLK KK+ FD  + +E+D+ NWNP+YML E ++DLK I+E
Sbjct: 883  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            +R VFDAEVQKLEADR+QL TEIA +GD+SWPLPVN++RL+ NAQKTFK+D RRPSDMHP
Sbjct: 943  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            ME+VE+VDKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RL+REAF+
Sbjct: 1003 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSV+LKP V  TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM T+I
Sbjct: 1123 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDE+I P+K+SPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  K  K+DDNEGFK+E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIE+IEVLGIE
Sbjct: 1303 FIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG CSLYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GLEFGMTP RSP+SGTPYHDGMMSP YL SPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1483 E-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score =  613 bits (1580), Expect = e-172
 Identities = 298/329 (90%), Positives = 311/329 (94%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R +AWH D++KG +T GDT VRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA TME IN+TIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
             VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AGSSA+KSLSESNNLKAMVT
Sbjct: 707  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 1144 bits (2958), Expect = 0.0
 Identities = 565/654 (86%), Positives = 613/654 (93%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIE+Q LDSLK KK+ FD  + +E+D+ NWNP+YML E ++DLK I+E
Sbjct: 883  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            +R VFDAEVQKLEADR+QL TEIA +GD+SWPLPVN++RL+ NAQKTFK+D RRPSDMHP
Sbjct: 943  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            ME+VE+VDKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RL+REAF+
Sbjct: 1003 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSV+LKP V  TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM T+I
Sbjct: 1123 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDE+I P+K+SPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  K  K+DDNEGFK+E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIE+IEVLGIE
Sbjct: 1303 FIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG CSLYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GLEFGMTP RSP+SGTPYHDGMMSP YL SPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1483 E-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score =  613 bits (1580), Expect = e-172
 Identities = 298/329 (90%), Positives = 311/329 (94%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R +AWH D++KG +T GDT VRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA TME IN+TIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
             VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AGSSA+KSLSESNNLKAMVT
Sbjct: 707  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 1144 bits (2958), Expect = 0.0
 Identities = 565/654 (86%), Positives = 613/654 (93%), Gaps = 1/654 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMD+VWIE+Q LDSLK KK+ FD  + +E+D+ NWNP+YML E ++DLK I+E
Sbjct: 883  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
            +R VFDAEVQKLEADR+QL TEIA +GD+SWPLPVN++RL+ NAQKTFK+D RRPSDMHP
Sbjct: 943  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            ME+VE+VDKLQERLKVVPG+D LS+EAQKNATLFFNILLRS  ASKRVLKE+RL+REAF+
Sbjct: 1003 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSV+LKP V  TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM T+I
Sbjct: 1123 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFVKSYYEMPDE+I P+K+SPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLT
Sbjct: 1183 EEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILRIRIMNDEAPKGEL DESAEDDVFLKKI SNMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK  K  K+DDNEGFK+E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIE+IEVLGIE
Sbjct: 1303 FIKKGKTTKYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF
Sbjct: 1363 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG CSLYLN+EMLK AIE+ LPSYM
Sbjct: 1423 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 237
            E GLEFGMTP RSP+SGTPYHDGMMSP YL SPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1483 E-GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score =  613 bits (1580), Expect = e-172
 Identities = 298/329 (90%), Positives = 311/329 (94%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL R +AWH D++KG +T GDT VRIEKGELLSGTLCKKTLGTSTGS
Sbjct: 587  GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA TME IN+TIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
             VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AGSSA+KSLSESNNLKAMVT
Sbjct: 707  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 1143 bits (2956), Expect = 0.0
 Identities = 565/655 (86%), Positives = 616/655 (94%), Gaps = 2/655 (0%)
 Frame = -3

Query: 2195 QFLYGEDGMDAVWIETQKLDSLKAKKTAFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIRE 2016
            QFLYGEDGMDAVWIE+QKLDSLK KK  FD+++ YE+DD NW P+YMLPE V+DLK IRE
Sbjct: 883  QFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIRE 942

Query: 2015 IRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHP 1836
             R+VF+AEVQKLEADR QLGTEI  TGDNSWP+PVN++RL+ NAQKTFKIDFRRPSDMHP
Sbjct: 943  FRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHP 1002

Query: 1835 MEIVESVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFD 1656
            MEIVE++DKLQERLKVVPGDD +S+EAQKNATLFFNILLRS  ASKRVLKEYRL++EAF+
Sbjct: 1003 MEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFE 1062

Query: 1655 WLVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1476
            W++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1063 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1122

Query: 1475 IINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLI 1296
            IINVAKKIKTPSLSVYLKPEV K KE AK VQCALEYTTLRSVT ATE+WYDPDP+ T+I
Sbjct: 1123 IINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTII 1182

Query: 1295 EEDVEFVKSYYEMPDEEIDPDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1116
            EEDVEFV+SYYEMPDE+IDPDK+SPWLLRIELNREMM+DKKLSMADIAEKIN EFDDDL+
Sbjct: 1183 EEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLS 1242

Query: 1115 CIFNDDNAEKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIASNMLTEMALRGIPDINKV 939
            CIFNDDNA+KLILRIRI ND+APKGE+ DESAEDDVFLKKI  NMLTEMALRGIPDINKV
Sbjct: 1243 CIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKV 1302

Query: 938  FIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIE 759
            FIK+ KV KFD +EGFKA+NEWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIE
Sbjct: 1303 FIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIE 1362

Query: 758  AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 579
            AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSF
Sbjct: 1363 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSF 1422

Query: 578  EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYM 399
            EETVDILLDAAV+AE+D LRGVTENIMLGQLAPIGTGGC+LYLN++ML+QAIE+ LPSY+
Sbjct: 1423 EETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYV 1482

Query: 398  EGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPI-TDAQFSPYVGGMAF 237
            E GL+FGMTP RSPISGTPYH+GMMSP+YLLSPN+R SPI TDA FSPYVG MAF
Sbjct: 1483 E-GLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536



 Score =  627 bits (1616), Expect = e-176
 Identities = 302/329 (91%), Positives = 319/329 (96%)
 Frame = -1

Query: 3199 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWT 3020
            PQ+NRPVMGIVQDTLLGCRK+TKRDT IEKDVFMNILMWW+DFDGK+PAPAILKPRP+WT
Sbjct: 527  PQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWT 586

Query: 3019 GKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGS 2840
            GKQVFNLIIPKQINL+R+SAWH+++E G+ITPGDT VRIEKGELLSGTLCKK+LGT +GS
Sbjct: 587  GKQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGS 646

Query: 2839 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKS 2660
            LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ FSIGIGDTIADA+TMEKINETIS AK+
Sbjct: 647  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKN 706

Query: 2659 KVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVT 2480
            +VKELIK A E  LEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVT
Sbjct: 707  EVKELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766

Query: 2479 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 2300
            AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826

Query: 2299 TPQEFFFHAMGGREGLIDTAVKTSETGYI 2213
            TPQEFFFHAMGGREGLIDTAVKTSETGYI
Sbjct: 827  TPQEFFFHAMGGREGLIDTAVKTSETGYI 855