BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00003831
         (3379 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   454   e-125
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   385   e-108
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   385   e-104
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]   347   3e-97
gb|ABW74566.1| integrase [Boechera divaricarpa]                       361   1e-96
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   347   2e-96
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]   337   2e-89
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   258   1e-68
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   262   9e-67
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]           261   1e-66
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   261   1e-66
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]   261   1e-66
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]   261   1e-66
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   257   3e-66
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   259   4e-66
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         258   1e-65
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   258   2e-65
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...   257   2e-65
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   246   5e-65
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       251   2e-63

>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  454 bits (1169), Expect = e-125
 Identities = 226/349 (64%), Positives = 265/349 (75%)
 Frame = +3

Query: 2331 RKKD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQ 2510
            ++KD Q  ANF++  E +SKLFMA SQIT + + VWFIDSGCSNH++  +SLFRDLDESQ
Sbjct: 276  KQKDEQKDANFTQNVEEESKLFMASSQITESANAVWFIDSGCSNHMSSSKSLFRDLDESQ 335

Query: 2511 KSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLF 2690
            KS+V+LGDDKQV +EGKGT+ IKT+QGNVK L DVQ VP LAHNLLS GQLM SGYSV+F
Sbjct: 336  KSEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQLMTSGYSVVF 395

Query: 2691 KNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXX 2870
             +N C + D +SG+TIA VP+TQN MFPL++S V  +AL+ K  NET             
Sbjct: 396  YDNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYGHLNVN 455

Query: 2871 XXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMK 3050
                   K+MV+ LP + ELDLCEGCI+GKQ+RKS P+GK WRA  C ELVH DLCG MK
Sbjct: 456  WLKLLVQKDMVIGLPNIKELDLCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMK 515

Query: 3051 TESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGG 3230
             ESLGGS YFL+FTDDYS  +W YFLKFKSE FE FKKFK  VE ++   IK+LRTDRGG
Sbjct: 516  MESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGG 575

Query: 3231 EFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
            EFLSN F+LFCEENGIR ELT PY+P+QNGVAE KN TVV MARS L A
Sbjct: 576  EFLSNDFNLFCEENGIRRELTAPYTPEQNGVAERKNRTVVEMARSSLKA 624



 Score =  175 bits (444), Expect(2) = 6e-67
 Identities = 100/233 (42%), Positives = 133/233 (57%), Gaps = 3/233 (1%)
 Frame = +3

Query: 1557 DLKKKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDE 1736
            ++ K+++ G  KVI VK+Q+LR DFETLFM  NESVQ +L R S IV++M+SYGE++ ++
Sbjct: 91   EILKQEYFGDDKVITVKLQTLRRDFETLFMNENESVQGYLSRTSAIVNRMRSYGEKIDNQ 150

Query: 1737 IVISKVLRSL---LQNLIMWLHP*RNQNTYLYFHLMN*WVLC*LMKIG*TGRPREKIEEK 1907
            IV+SKVLRSL    ++++  +   ++ +TY +  LM+      L       R REK++EK
Sbjct: 151  IVVSKVLRSLTTKFEHVVTAIEESKDLSTYSFDELMS----SLLAHEDRLNRSREKVQEK 206

Query: 1908 DFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQFNETRQPKGDFHYRYCKKF 2087
             FQV                                   +Q  E RQ K +   RYCKKF
Sbjct: 207  AFQVKGEFSYKGKAENSAGRGHGRGNFRGRGRGGSGRGRNQVGEFRQYKSNIQCRYCKKF 266

Query: 2088 GHTEAYCWIKQKDEQNHANFSEKAENESKLFMAHSQITNTTTNVWFTDS*CSN 2246
            GH E  CW KQKDEQ  ANF++  E ESKLFMA SQIT +   VWF DS CSN
Sbjct: 267  GHKEVDCWTKQKDEQKDANFTQNVEEESKLFMASSQITESANAVWFIDSGCSN 319



 Score =  109 bits (272), Expect(2) = 6e-67
 Identities = 56/104 (53%), Positives = 73/104 (70%)
 Frame = +1

Query: 1267 MAANGMXXXXQPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERRL 1446
            MA NG     QP IPIF GE Y+FWS+ MKTLF+SQELWD+VE G   I E +A +   +
Sbjct: 1    MAGNGTAASSQPLIPIFRGENYQFWSLKMKTLFKSQELWDIVETG---IPEGNANQ---M 54

Query: 1447 KEIRQKDAKALFFIQQAVHETIFSRIAAAATSRDAWQI*KKRSF 1578
            +E R++D+KALF IQQA+ + IF RI+A  TS+ AW+I K+  F
Sbjct: 55   REHRKRDSKALFTIQQALDDEIFPRISAVETSKQAWEILKQEYF 98


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  385 bits (990), Expect(2) = e-108
 Identities = 189/349 (54%), Positives = 247/349 (70%)
 Frame = +3

Query: 2331 RKKD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQ 2510
            +K+  +  AN+ E+ E+Q KLFM +++   +++N+WF+DSGCSNH+TGI+SLF++LDES 
Sbjct: 271  KKERQEKQANYVEQEEDQVKLFMXYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELDESH 330

Query: 2511 KSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLF 2690
            K  V+LGDDKQV VEGKG +A+    GNVKLL +V  +P L  NLLS GQLM SGYS+LF
Sbjct: 331  KLKVKLGDDKQVXVEGKGIMAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYSILF 390

Query: 2691 KNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXX 2870
                C++ D KS Q I  V +  N +FPL VS++EK+AL+ K  +E+             
Sbjct: 391  DGATCVIKDKKSDQIIVNVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVK 450

Query: 2871 XXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMK 3050
                 + K MV  LP++  +++CEGCI+GKQS+K  P G+  RA+ C E++H DLCG M+
Sbjct: 451  GLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 510

Query: 3051 TESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGG 3230
            T S GGS YFLLFTDD+S M+W YFL+ K+E FE FKKFK  VEK++   IK LRTDRGG
Sbjct: 511  TASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGG 570

Query: 3231 EFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
            EFLSN F +FCEE G+  ELTTPYSP+QNGVAE KN TVV MARS++ A
Sbjct: 571  EFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMKA 619



 Score = 36.6 bits (83), Expect(2) = e-108
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 2249 SETRQPEGDFQCRYCKKFGHTEAYCWTTQKR 2341
            +E  + + + QC YCK+FGH +  CW  +++
Sbjct: 245  TEKNRNKSNIQCYYCKRFGHVQXECWKKERQ 275



 Score =  121 bits (303), Expect(2) = 4e-50
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = +1

Query: 1282 MXXXXQPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERRLKEIRQ 1461
            M    QP IPIF GE YEFWSI MKTLF+SQ+LWDLVE+G+     P  +EE RLKE  +
Sbjct: 8    MVSVSQPTIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGY-----PYPDEEARLKENTK 62

Query: 1462 KDAKALFFIQQAVHETIFSRIAAAATSRDAW 1554
            KD+KALFFIQQAVHE+IFS+IAAA T+++AW
Sbjct: 63   KDSKALFFIQQAVHESIFSKIAAATTAKEAW 93



 Score =  107 bits (267), Expect(2) = 4e-50
 Identities = 76/236 (32%), Positives = 110/236 (46%), Gaps = 9/236 (3%)
 Frame = +3

Query: 1566 KKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVI 1745
            K  FQGSSKVI VK+QSLR DFETL MKN ES+QDF ++              + D+ V+
Sbjct: 97   KTAFQGSSKVITVKLQSLRRDFETLHMKNGESMQDFFVK-------------NILDQTVV 143

Query: 1746 SKVLRSL---LQNLIMWLHP*RNQNTYLYFHLMN*WVLC*LMKIG*TGRPREKIEEKDFQ 1916
            +KVLRSL     +++  +   ++ +TY +  LM       +       R  EK EEK F 
Sbjct: 144  AKVLRSLTPKFDHVVAAIEESKDLSTYSFDELMGSLQSHEVR----LSRTEEKNEEKAFY 199

Query: 1917 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS------QFNETRQPKGDFHYRYC 2078
                                                       Q  E  + K +    YC
Sbjct: 200  TKGETSDQKNGGREATGRGRGRGGAHGRGGRGRGRGDAQGYQRQSTEKNRNKSNIQCYYC 259

Query: 2079 KKFGHTEAYCWIKQKDEQNHANFSEKAENESKLFMAHSQITNTTTNVWFTDS*CSN 2246
            K+FGH +  CW K++ E+  AN+ E+ E++ KLFM +++   ++ N+WF DS CSN
Sbjct: 260  KRFGHVQXECWKKERQEKQ-ANYVEQEEDQVKLFMXYNEEVVSSNNIWFLDSGCSN 314


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  385 bits (988), Expect = e-104
 Identities = 190/349 (54%), Positives = 247/349 (70%)
 Frame = +3

Query: 2331 RKKD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQ 2510
            +K+  +  AN+ E+ E+Q KLFMA+++   +++N+WF+DSGCSNH+TGI+SLF++LDES 
Sbjct: 256  KKERQEKQANYVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELDESH 315

Query: 2511 KSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLF 2690
            K  V+LGDDKQV+VEGKGT A+    GNVKLL +V  +P L  NLLS GQLM SGYS+LF
Sbjct: 316  KLKVKLGDDKQVQVEGKGTXAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYSILF 375

Query: 2691 KNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXX 2870
                C++ D KS Q I  V +  N +FPL VS++EK+AL+ K  +E+             
Sbjct: 376  DGATCVIKDKKSDQIIVBVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVK 435

Query: 2871 XXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMK 3050
                 + K MV  LP++  +++CEGCI+GKQS+K  P G+  RA+ C E++H DLCG M+
Sbjct: 436  GLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 495

Query: 3051 TESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGG 3230
            T S GGS YFLLFTDD+S M+W YFL+ K+E FE FKKFK  VEK++   IK LRTDRGG
Sbjct: 496  TASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGG 555

Query: 3231 EFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
            EFLSN F +F EE G+  ELTTPYSP QNGVAE KN TVV MARS++ A
Sbjct: 556  EFLSNDFKVFXEEEGLHRELTTPYSPXQNGVAERKNRTVVEMARSMMKA 604



 Score =  122 bits (305), Expect(2) = 6e-54
 Identities = 88/238 (36%), Positives = 123/238 (51%), Gaps = 11/238 (4%)
 Frame = +3

Query: 1566 KKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVI 1745
            K  FQGSSKVI VK+QSLR DFETL MKN ESVQDFL RV+ IV+QM+SYGE++ D+ V+
Sbjct: 97   KTAFQGSSKVITVKLQSLRRDFETLHMKNGESVQDFLSRVAAIVNQMRSYGEDILDQTVV 156

Query: 1746 SKVLRSL---LQNLIMWLHP*RNQNTYLYFHLMN*WVLC*LMKIG*TGRPREKIEEKDFQ 1916
            +KVLRSL     +++  +   ++ +TY +  LM       +       R  EK EEK F 
Sbjct: 157  AKVLRSLTPKFDHVVAAIEESKDLSTYSFDELMGSLQSHEVR----LSRTEEKNEEKXFY 212

Query: 1917 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQFNETRQP------KGDFHYRYC 2078
                                                 Q N  R+       +G  H R  
Sbjct: 213  T------------------------------KGETSDQKNGGREATGRGCGRGGAHGRGG 242

Query: 2079 KKFGHTEAY--CWIKQKDEQNHANFSEKAENESKLFMAHSQITNTTTNVWFTDS*CSN 2246
            +  G  +A   CW K++ E+  AN+ E+ E++ KLFMA+++   ++ N+WF DS CSN
Sbjct: 243  RGRGRGDAQXECWKKERQEK-QANYVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSN 299



 Score =  119 bits (298), Expect(2) = 6e-54
 Identities = 59/91 (64%), Positives = 71/91 (78%)
 Frame = +1

Query: 1282 MXXXXQPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERRLKEIRQ 1461
            M    QP IPIF GE YEFWSI MKTLF+SQ+LWDLVE+G+     P  +EE RLKE  +
Sbjct: 8    MVSVSQPAIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGY-----PYPDEEARLKENTK 62

Query: 1462 KDAKALFFIQQAVHETIFSRIAAAATSRDAW 1554
            KD+KALFFIQQAVHE+IFS+IAA  T+++AW
Sbjct: 63   KDSKALFFIQQAVHESIFSKIAAXTTAKEAW 93


>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
          Length = 1109

 Score =  347 bits (891), Expect(2) = 3e-97
 Identities = 175/349 (50%), Positives = 230/349 (65%)
 Frame = +3

Query: 2331 RKKD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQ 2510
            +K+  +  AN+ E+ E+Q KLFMA+++    ++N+WF+DSGCSNH+TGI+SLF++LDES 
Sbjct: 257  KKERQEKQANYVEQEEDQVKLFMAYNEEVVXSNNIWFLDSGCSNHMTGIKSLFKELDESH 316

Query: 2511 KSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLF 2690
            K  V+LGDDKQV VEGKGT+A+    GNVKLL +V  +P L  NLLS GQLM SGYS+LF
Sbjct: 317  KLKVKLGDDKQVXVEGKGTVAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYSILF 376

Query: 2691 KNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXX 2870
              + C++ D K  Q I  V +  N +FPL VS++EK+AL+ K  +E+             
Sbjct: 377  DGSTCVIKDKKFDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVK 436

Query: 2871 XXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMK 3050
                 + K MV  LP++  +++CEGCI+GKQS+K  P G+  RA+ C E++H DLCG M+
Sbjct: 437  GLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 496

Query: 3051 TESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGG 3230
              S GGS YFLLFTDD+S M+W YFL+                        K LRTDRGG
Sbjct: 497  IASFGGSRYFLLFTDDHSRMSWVYFLQ-----------------------SKVLRTDRGG 533

Query: 3231 EFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
            EFLSN F +FCEE G+  ELTTPYSP+QNGV E KN TVV MARS++ A
Sbjct: 534  EFLSNDFKVFCEEEGLHRELTTPYSPEQNGVVERKNRTVVEMARSMMKA 582



 Score = 38.1 bits (87), Expect(2) = 3e-97
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 2249 SETRQPEGDFQCRYCKKFGHTEAYCWTTQKR 2341
            +E  + + + QC YCK+FGH +A CW  +++
Sbjct: 231  TEKSRNKSNIQCYYCKRFGHVQAECWKKERQ 261



 Score =  136 bits (342), Expect(2) = 4e-50
 Identities = 88/231 (38%), Positives = 121/231 (52%), Gaps = 9/231 (3%)
 Frame = +3

Query: 1581 GSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLR 1760
            GSSKVI VK+QSLR DFETL MKN ESVQDFL RV+ IV+QM+SYGE++ D+ V++KVLR
Sbjct: 75   GSSKVITVKLQSLRRDFETLHMKNGESVQDFLSRVAAIVNQMRSYGEDILDQTVVAKVLR 134

Query: 1761 SL---LQNLIMWLHP*RNQNTYLYFHLMN*WVLC*LMKIG*TGRPREKIEEKDFQVXXXX 1931
            SL     +++  +   ++ +TY +  LM               R  EK EEK F      
Sbjct: 135  SLTPKFDHVVAAIEESKDLSTYSFDELMG----SLQSHEXRLSRTXEKNEEKTFYTKGET 190

Query: 1932 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQFNETRQP------KGDFHYRYCKKFGH 2093
                                               + RQ       K +    YCK+FGH
Sbjct: 191  SDQKNGGREATGRGRGRGGAHGRGGRXRGRGDAQGDQRQSTEKSRNKSNIQCYYCKRFGH 250

Query: 2094 TEAYCWIKQKDEQNHANFSEKAENESKLFMAHSQITNTTTNVWFTDS*CSN 2246
             +A CW K++ E+  AN+ E+ E++ KLFMA+++    + N+WF DS CSN
Sbjct: 251  VQAECWKKERQEK-QANYVEQEEDQVKLFMAYNEEVVXSNNIWFLDSGCSN 300



 Score = 92.4 bits (228), Expect(2) = 4e-50
 Identities = 47/72 (65%), Positives = 54/72 (75%)
 Frame = +1

Query: 1282 MXXXXQPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERRLKEIRQ 1461
            M    QP IPIF GE YEFWSI MKTLF+SQ+LWDLVE+G+     P  +EE RLKE  +
Sbjct: 8    MVSVSQPAIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGY-----PYPDEEARLKENTK 62

Query: 1462 KDAKALFFIQQA 1497
            KD+KALFFIQQA
Sbjct: 63   KDSKALFFIQQA 74


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  361 bits (927), Expect = 1e-96
 Identities = 179/347 (51%), Positives = 241/347 (69%)
 Frame = +3

Query: 2331 RKKD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQ 2510
            +K+  + HA F E+   Q +LFMA       + +VW++DSGCSNH+TG +S F++LDES 
Sbjct: 113  KKQKEEKHACFVEQENEQPRLFMAFES-EEASKSVWYLDSGCSNHMTGTKSSFKELDESH 171

Query: 2511 KSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLF 2690
            K  V+LG+DK+V+VEG+G +A+    GN+KL+  V  +P LAHNLLS GQ++ +  SVLF
Sbjct: 172  KLKVKLGNDKEVQVEGRGVVAVHNGHGNLKLIYGVYYIPDLAHNLLSVGQMVENNCSVLF 231

Query: 2691 KNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXX 2870
              N C++ + KSG T+A+V  T NN++PL +S+VE  AL+AK  + ++            
Sbjct: 232  DGNECVIKEKKSGVTLAMVKKTSNNLYPLEMSSVETKALVAKVSDISKLLHLRYGHLHEN 291

Query: 2871 XXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMK 3050
                   K+MV+ LP++G L LCEGC++GKQSR+S P+G+  RA +  E+VH DLCG M+
Sbjct: 292  GLRVLNQKDMVIGLPKIGALKLCEGCVYGKQSRRSFPVGRARRATQYLEIVHADLCGPMQ 351

Query: 3051 TESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGG 3230
            T SLGGS YFL+ TDDYS M+W YFLK K EAF+ FK FK LVEK++   +K LRTDRGG
Sbjct: 352  TASLGGSKYFLMLTDDYSRMSWVYFLKSKGEAFDMFKNFKALVEKQSEQQVKVLRTDRGG 411

Query: 3231 EFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
            EF S  F+ FCE+ GI  ELTT Y+P+QNGVAE KN TVV MARS+L
Sbjct: 412  EFTSTKFNQFCEKEGIHHELTTAYTPEQNGVAERKNTTVVEMARSML 458



 Score = 61.6 bits (148), Expect = 2e-06
 Identities = 29/65 (44%), Positives = 40/65 (61%)
 Frame = +3

Query: 2052 KGDFHYRYCKKFGHTEAYCWIKQKDEQNHANFSEKAENESKLFMAHSQITNTTTNVWFTD 2231
            K D    YCKK+GH +  CW KQK+E+ HA F E+   + +LFMA  +    + +VW+ D
Sbjct: 93   KSDIQCHYCKKYGHMQTNCWKKQKEEK-HACFVEQENEQPRLFMAF-ESEEASKSVWYLD 150

Query: 2232 S*CSN 2246
            S CSN
Sbjct: 151  SGCSN 155


>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  347 bits (891), Expect(2) = 2e-96
 Identities = 176/349 (50%), Positives = 233/349 (66%)
 Frame = +3

Query: 2331 RKKD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQ 2510
            +K+  +  AN+ E+ E+Q KLFMA+++   +++N+WF+DSGCSNH+TGI+SLF++LDES 
Sbjct: 398  KKERQEKQANYVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELDESH 457

Query: 2511 KSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLF 2690
            K  V+LGDD QV+VEGKGT+A+    GNVKLL +V  +P L   L+  G           
Sbjct: 458  KLXVKLGDDXQVQVEGKGTVAVNNGHGNVKLLYNVYFIPSLTEKLVKCGATY-------- 509

Query: 2691 KNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXX 2870
                    D KS Q I  V +  N +FPL VS++EK+AL+ K  +E+             
Sbjct: 510  --------DKKSDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVK 561

Query: 2871 XXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMK 3050
                 + K MV  LP++  +++CEGCI+GKQS+K  P G+  RA+ C E++H DLCG M+
Sbjct: 562  GLKLLSKKEMVFELPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 621

Query: 3051 TESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGG 3230
            T S GGS YFLLFTDD+S M+W YFL+ K+E FE FKKFK  VEK++   IK LRTDR G
Sbjct: 622  TASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRXG 681

Query: 3231 EFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
            EFLSN F +FCEE G+  ELTTPYSP+QNGVAE KN TVV MARS++ A
Sbjct: 682  EFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMXA 730



 Score = 35.8 bits (81), Expect(2) = 2e-96
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 2249 SETRQPEGDFQCRYCKKFGHTEAYCWTTQKR 2341
            +E  + + +  C YCK+FGH +A CW  +++
Sbjct: 372  TEKSRNKSNIXCYYCKRFGHVQAECWKKERQ 402



 Score =  137 bits (346), Expect(2) = 3e-55
 Identities = 89/233 (38%), Positives = 128/233 (54%), Gaps = 9/233 (3%)
 Frame = +3

Query: 1575 FQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKV 1754
            FQGSSKVI VK+QSLR DFETL MKN ES QDFL RV+ IV+QM+SYGE++ D+ V++KV
Sbjct: 214  FQGSSKVITVKLQSLRRDFETLHMKNGESXQDFLSRVAAIVNQMRSYGEDILDQTVVAKV 273

Query: 1755 LRSL---LQNLIMWLHP*RNQNTYLYFHLMN*WVLC*LMKIG*TGRPREKIEEKDFQVXX 1925
            LRSL     +++  +   ++ +TY +  LM   +    +++  T    +K EEK F    
Sbjct: 274  LRSLTPKFDHVVAXIEESKDLSTYSFDELMG-SLQSHEVRLSXT---EDKNEEKXFYTKG 329

Query: 1926 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQFNETRQP------KGDFHYRYCKKF 2087
                                                 + RQ       K +    YCK+F
Sbjct: 330  ETSDXKNGGREXTGRGRGRGGAHGRGGRGRGRGDAQGDQRQSTEKSRNKSNIXCYYCKRF 389

Query: 2088 GHTEAYCWIKQKDEQNHANFSEKAENESKLFMAHSQITNTTTNVWFTDS*CSN 2246
            GH +A CW K++ E+  AN+ E+ E++ KLFMA+++   ++ N+WF DS CSN
Sbjct: 390  GHVQAECWKKERQEK-QANYVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSN 441



 Score =  107 bits (268), Expect(2) = 3e-55
 Identities = 51/81 (62%), Positives = 65/81 (80%)
 Frame = +1

Query: 1312 IFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERRLKEIRQKDAKALFFIQ 1491
            +  GE YEFWSI MKTLF+SQ+LWDLVE+G+     P  +EE RLKE  +KD+KALFFIQ
Sbjct: 132  VVEGECYEFWSIKMKTLFKSQDLWDLVENGY-----PYPDEEARLKENTKKDSKALFFIQ 186

Query: 1492 QAVHETIFSRIAAAATSRDAW 1554
            QA+HE+IFS+IA A T+++AW
Sbjct: 187  QAIHESIFSKIAVATTAKEAW 207


>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
          Length = 1183

 Score =  337 bits (865), Expect = 2e-89
 Identities = 168/302 (55%), Positives = 213/302 (70%)
 Frame = +3

Query: 2472 GIRSLFRDLDESQKSDVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLS 2651
            GI+SLF++LDES K  V+LGDDKQV+VEGKGT+A+    GNVKLL +V  +P L  NLLS
Sbjct: 252  GIKSLFKELDESHKLKVKLGDDKQVQVEGKGTVAVNNGHGNVKLLYNVYFIPSLTQNLLS 311

Query: 2652 AGQLMASGYSVLFKNN*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNET 2831
             GQLM SGYS+LF    C++ D KS Q I  V +  N +FPL VS++EK+AL+ K  +E+
Sbjct: 312  VGQLMVSGYSILFDGATCVIKDKKSDQIIFDVRMAANKLFPLEVSSIEKHALVVKETSES 371

Query: 2832 QXXXXXXXXXXXXXXXXXTMKNMVVWLPEMGELDLCEGCIFGKQSRKSLPIGK*WRAARC 3011
                              + K MV  LP++  +++CEGCI+GKQS+K  P G+  RA+ C
Sbjct: 372  NLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSC 431

Query: 3012 FELVHGDLCGAMKTESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKT 3191
             E++H DLCG M+T S GGS YFLLFT+D+S M+W YFL+ K+E FE FKKFK  VEK++
Sbjct: 432  LEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETFETFKKFKAFVEKQS 491

Query: 3192 SCNIKALRTDRGGEFLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
               IK LRTDRGGEFLSN F +FCEE G+  ELTTPYSP+QNGVAE KN TVV MARS++
Sbjct: 492  GKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMM 551

Query: 3372 NA 3377
             A
Sbjct: 552  KA 553



 Score =  119 bits (299), Expect(2) = 1e-46
 Identities = 59/91 (64%), Positives = 71/91 (78%)
 Frame = +1

Query: 1282 MXXXXQPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERRLKEIRQ 1461
            M    QP IPIF GE YEFWSI MKTLF+SQ+LWDLVE+G+     P  +EE RLKE  +
Sbjct: 8    MVSVSQPAIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGY-----PYPDEEARLKENTK 62

Query: 1462 KDAKALFFIQQAVHETIFSRIAAAATSRDAW 1554
            KD+KALFFIQQAVHE+IFS+IA A T+++AW
Sbjct: 63   KDSKALFFIQQAVHESIFSKIAVATTTKEAW 93



 Score = 97.1 bits (240), Expect(2) = 1e-46
 Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
 Frame = +3

Query: 1566 KKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVI 1745
            K  FQGSSKVI VK+QSLR DFETL MKN ESVQDFL RV+ IV+QM+SYGE++ D+ ++
Sbjct: 97   KTAFQGSSKVITVKLQSLRRDFETLHMKNGESVQDFLSRVAAIVNQMRSYGEDILDQTIV 156

Query: 1746 SKVLRSL---LQNLIMWLHP*RNQNTYLYFHLM 1835
            +KVLRSL     +++  +   +  +TY +  LM
Sbjct: 157  AKVLRSLTPKFDHVVAAIEESKGLSTYSFDELM 189


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  258 bits (660), Expect(2) = 1e-68
 Identities = 144/344 (41%), Positives = 204/344 (59%), Gaps = 2/344 (0%)
 Frame = +3

Query: 2346 QNHANFSEEAENQSK-LFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDV 2522
            + HA+ +EE +N  + LFMA   +++   N W IDSGC++H+T   S+F  +D S +  V
Sbjct: 285  EQHASVTEEDKNDDEHLFMASQALSSHELNTWLIDSGCTSHMTKHLSIFTSIDRSVQPKV 344

Query: 2523 QLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN* 2702
            +LG+ + V+ +GKGTIAI T +G  K++ +V  +P L  NLLS  Q++ +GY+V FK N 
Sbjct: 345  KLGNGEVVQAKGKGTIAISTKRGT-KIVTNVLYIPDLDQNLLSVAQMLRNGYAVSFKENF 403

Query: 2703 CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXX 2882
            C +SD+  G  IA + +  N+ + L +  VE +   AK ++E+                 
Sbjct: 404  CFISDVH-GTKIAKIKMNGNSFY-LKLDLVEGHVFSAK-IDESVVWHKRYGHFNLKSLRF 460

Query: 2883 XTMKNMVVWLPEMG-ELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTES 3059
                 MV  +PE+      CE C  GKQ R+  P     RA    EL+H D+CG M T S
Sbjct: 461  MQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTS 520

Query: 3060 LGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFL 3239
            L  ++YF LF DD+S M W YFLK KS+    FK FK +VE ++  N+K LRTD GGE+ 
Sbjct: 521  LSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYT 580

Query: 3240 SNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
            S  FS+FC+E GI  +LT PYSPQQNGV++ KN TV+ MAR +L
Sbjct: 581  SKEFSVFCQEAGIVHQLTAPYSPQQNGVSKRKNRTVMEMARCML 624



 Score = 31.6 bits (70), Expect(2) = 1e-68
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2276 FQCRYCKKFGHTEAYCWTTQKR 2341
            F C +C K GH+E YC   +K+
Sbjct: 258  FNCNFCNKLGHSEKYCRAKKKQ 279


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  262 bits (669), Expect = 9e-67
 Identities = 145/347 (41%), Positives = 205/347 (59%), Gaps = 3/347 (0%)
 Frame = +3

Query: 2346 QNHANFSEEA--ENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSD 2519
            +  AN+ EE   E    L  ++ +     ++ W++DSG SNH+ G +S+F +LDES + +
Sbjct: 303  EEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN 362

Query: 2520 VQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN 2699
            V LGD+ ++ V+GKG I I+   G+ + + +V  +P +  N+LS GQL+  GY +  K+N
Sbjct: 363  VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422

Query: 2700 *CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXX 2879
               + D +S   I  VP+++N MF LN+       L      E+                
Sbjct: 423  NLSIRDQESN-LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLE 481

Query: 2880 XXTMKNMVVWLPEMGELD-LCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTE 3056
              + K MV  LP +   + +CEGC+ GKQ + S P     RA +  EL+H D+CG +K +
Sbjct: 482  LLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPK 541

Query: 3057 SLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEF 3236
            SLG S YFLLF DD+S   W YFLK KSE FE FKKFK  VEK++   IK +R+DRGGEF
Sbjct: 542  SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEF 601

Query: 3237 LSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
             S  F  +CE+NGIR +LT P SPQQNGVAE KN T++ MARS+L +
Sbjct: 602  TSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKS 648



 Score = 53.5 bits (127), Expect(2) = 1e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)
 Frame = +3

Query: 1434 REEIKRNQTEGRQSFVLYSTSRS*DNFLKNCSSCYLKRCLADLKKKKFQGSSKVIIVKIQ 1613
            ++ ++ ++   +++  L       D F K   +   K     L+   ++G+ +V  V++Q
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTS-YKGADQVKKVRLQ 114

Query: 1614 SLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +LR +FE L MK  E V D+  RV  + + +K  GE++ D  ++ KVLRSL
Sbjct: 115  TLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSL 165



 Score = 35.8 bits (81), Expect(2) = 1e-08
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 1772 KFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            KF+H+V  IEE+K L   + ++L+GSL A E++
Sbjct: 168  KFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEK 200



 Score = 63.9 bits (154), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +1

Query: 1267 MAANGMXXXXQPF-IPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERR 1443
            MA+N +     PF +P+     Y+ WS+ MK +  + ++W++VE GF++ E   +  + +
Sbjct: 1    MASNNV-----PFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQ 55

Query: 1444 ---LKEIRQKDAKALFFIQQAVHETIFSRIAAAATSRDAWQ 1557
               L++ R++D KAL  I Q + E  F ++  A ++++AW+
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWE 96


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
          Length = 1314

 Score =  261 bits (668), Expect = 1e-66
 Identities = 145/342 (42%), Positives = 204/342 (59%), Gaps = 1/342 (0%)
 Frame = +3

Query: 2349 NHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDVQL 2528
            N ANFS+E E   ++  +        D+VW IDSGC+NH+    +LFR++D    + + +
Sbjct: 304  NRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSLYHAKIHM 363

Query: 2529 GDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN*CI 2708
            G+    + EGKGT+A++T  G  K + DV LVP L  NLLS GQL+  GY+V F++  C 
Sbjct: 364  GNGSIAQSEGKGTVAVQTADGP-KFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCK 422

Query: 2709 VSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXXXT 2888
            + D K+ + +A + + +N  F L ++   + AL ++ V+ +                   
Sbjct: 423  ILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSE-VDISDLWHKRMGHLNYRALKLLR 481

Query: 2889 MKNMVVWLPEMG-ELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTESLG 3065
             K MV  LP +  + D CEGC+FGKQ + S P    WRA+  FELVH D+ G + T S G
Sbjct: 482  TKGMVQGLPFITLKSDPCEGCVFGKQIQASFPHSGAWRASAPFELVHTDIVGKVPTMSEG 541

Query: 3066 GSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFLSN 3245
            G+ YF+ F DDY+ M W YFLK KS A E FKKFK +VE +++  IK LR+D+GGE++S 
Sbjct: 542  GNWYFITFIDDYTRMIWVYFLKEKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISK 601

Query: 3246 YFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
             F  +CE  GIR +LTT YS QQNGVAE KN T+  MA S+L
Sbjct: 602  EFEKYCENAGIRRQLTTGYSAQQNGVAERKNRTINDMANSML 643



 Score = 89.0 bits (219), Expect(3) = 1e-35
 Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1297 QPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDI---EEPDAEEERRLKEIRQKD 1467
            Q  +P+F GE Y+ WSI M+TL  SQ LWD+V++G+ +    E   AE+++ L E R  D
Sbjct: 3    QSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVDNGYQEYSAGETLTAEQKKSLAEDRMSD 62

Query: 1468 AKALFFIQQAVHETIFSRIAAAATSRDAW 1554
            AKALF IQQ V E++F RI  A  S++AW
Sbjct: 63   AKALFLIQQGVAESLFPRIIGAKKSKEAW 91



 Score = 74.7 bits (182), Expect(3) = 1e-35
 Identities = 35/70 (50%), Positives = 51/70 (72%)
 Frame = +3

Query: 1557 DLKKKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDE 1736
            D  K++FQGS KV+ VK+Q+LR  F+ L MK +E V+D+  RV  IV+QM+ YGE++ D+
Sbjct: 92   DKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFSRVIEIVNQMRLYGEDINDQ 151

Query: 1737 IVISKVLRSL 1766
             V+ K+L SL
Sbjct: 152  KVVEKILISL 161



 Score = 36.6 bits (83), Expect(3) = 1e-35
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = +2

Query: 1772 KFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            K++++VA+IEESK LS  +  +LM SL ++E+R
Sbjct: 164  KYEYIVAAIEESKDLSTLTIQQLMSSLESHEER 196


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  261 bits (667), Expect = 1e-66
 Identities = 145/347 (41%), Positives = 205/347 (59%), Gaps = 3/347 (0%)
 Frame = +3

Query: 2346 QNHANFSEEA--ENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSD 2519
            +  AN+ EE   E    L  ++ +     ++ W++DSG SNH+ G +S+F +LDES + +
Sbjct: 303  EEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN 362

Query: 2520 VQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN 2699
            V LGD+ ++ V+GKG I I+   G+ + + +V  +P +  N+LS GQL+  GY +  K+N
Sbjct: 363  VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422

Query: 2700 *CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXX 2879
               + D +S   I  VP+++N MF LN+       L      E+                
Sbjct: 423  NLSIRDQESN-LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLE 481

Query: 2880 XXTMKNMVVWLPEMGELD-LCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTE 3056
              + K MV  LP +   + +CEGC+ GKQ + S P     RA +  EL+H D+CG +K +
Sbjct: 482  LLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPK 541

Query: 3057 SLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEF 3236
            SLG S YFLLF DD+S   W YFLK KSE FE FKKFK  VEK++   IK +R+DRGGEF
Sbjct: 542  SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEF 601

Query: 3237 LSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
             S  F  +CE+NGIR +LT P SPQQNGVAE KN T++ MARS+L +
Sbjct: 602  TSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKS 648



 Score = 53.5 bits (127), Expect(2) = 1e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)
 Frame = +3

Query: 1434 REEIKRNQTEGRQSFVLYSTSRS*DNFLKNCSSCYLKRCLADLKKKKFQGSSKVIIVKIQ 1613
            ++ ++ ++   +++  L       D F K   +   K     L+   ++G+ +V  V++Q
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTS-YKGADQVKKVRLQ 114

Query: 1614 SLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +LR +FE L MK  E V D+  RV  + + +K  GE++ D  ++ KVLRSL
Sbjct: 115  TLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSL 165



 Score = 35.8 bits (81), Expect(2) = 1e-08
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 1772 KFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            KF+H+V  IEE+K L   + ++L+GSL A E++
Sbjct: 168  KFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEK 200



 Score = 63.9 bits (154), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +1

Query: 1267 MAANGMXXXXQPF-IPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERR 1443
            MA+N +     PF +P+     Y+ WS+ MK +  + ++W++VE GF++ E   +  + +
Sbjct: 1    MASNNV-----PFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQ 55

Query: 1444 ---LKEIRQKDAKALFFIQQAVHETIFSRIAAAATSRDAWQ 1557
               L++ R++D KAL  I Q + E  F ++  A ++++AW+
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWE 96


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score =  261 bits (667), Expect = 1e-66
 Identities = 143/347 (41%), Positives = 193/347 (55%), Gaps = 1/347 (0%)
 Frame = +3

Query: 2337 KD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKS 2516
            K  +   NF+E+ E  S L   H+    T  N+W+ID+GCSNH+ G +S F DLDE+ + 
Sbjct: 261  KQGEERTNFAEKEEEVSLLMACHAN-QXTHPNLWYIDTGCSNHMCGDKSAFSDLDETFRX 319

Query: 2517 DVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKN 2696
             V  GD+ +V V GKG++ I + + + +++ +V  VP L  NLLS  QL   GY +  K+
Sbjct: 320  SVTFGDNSKVSVMGKGSVXIHSKEKSDQIISNVFFVPDLKTNLLSVXQLQEKGYEIFIKD 379

Query: 2697 N*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXX 2876
              C + D K G  IA V +T N MFPL +    +N    K ++E                
Sbjct: 380  GVCRIQDEKLG-LIAQVNMTTNRMFPLYLDNTTQNCFSTKLMDEGWLWHFRYGHLNFGGL 438

Query: 2877 XXXTMKNMVVWLPEMGE-LDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKT 3053
                 KNMV  LP +     +CE C+ GKQ R   P GK WR  +  ELVH D+CG +  
Sbjct: 439  KTLQQKNMVTGLPPIXTPSQICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDICGPINP 498

Query: 3054 ESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGE 3233
             S GG  YF+ F  DYS   W YFL+ KSEAF  FK FK LVEK+    IK  R+D GGE
Sbjct: 499  TSNGGKRYFITFIXDYSXKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGE 558

Query: 3234 FLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLN 3374
            + S  F  FCE +GI+ +LT  YSPQQNG +  KN T++ M R++L+
Sbjct: 559  YTSQEFVNFCENHGIQKQLTAAYSPQQNGXSXRKNRTILNMVRTILS 605



 Score = 43.5 bits (101), Expect(2) = 2e-06
 Identities = 18/47 (38%), Positives = 32/47 (68%)
 Frame = +3

Query: 1626 DFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +FETL M++ ESV D+  R   I ++M+ +G++  D  ++ K+LRS+
Sbjct: 83   EFETLRMRSGESVTDYFSRTMAIXNKMRIHGDKTEDVTIVEKILRSM 129



 Score = 38.1 bits (87), Expect(2) = 2e-06
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +2

Query: 1766 TPKFDHVVASIEESKYLSVFSFDELMGSLLANEDRLNR 1879
            TP F+ VV SIEES  +   S DEL  SLL +E + N+
Sbjct: 130  TPXFNFVVCSIEESHDIDELSIDELQSSLLVHERKFNQ 167


>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
          Length = 1246

 Score =  261 bits (667), Expect = 1e-66
 Identities = 145/347 (41%), Positives = 195/347 (56%), Gaps = 1/347 (0%)
 Frame = +3

Query: 2337 KD*QNHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKS 2516
            K  +   NF+E+ E  S L   H+    T  N+W+ID+ CSNH+ G +S F DLDE+ ++
Sbjct: 261  KQGEERTNFAEKEEEVSLLMACHAN-QGTHXNLWYIDTXCSNHMCGDKSAFSDLDETFRN 319

Query: 2517 DVQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKN 2696
             V  GD+ +V V GKG++ I + + + K++ +V  VP L   LLS GQL   GY +  K+
Sbjct: 320  SVTFGDNSKVSVMGKGSVRIHSKEKSDKIISNVFFVPDLKTTLLSVGQLQEKGYEIFIKD 379

Query: 2697 N*CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXX 2876
              C + D K G  IA V +T N MFPL +    +N    K ++E                
Sbjct: 380  GVCRIQDEKLG-LIAQVNMTTNRMFPLYLDNTTQNCFSVKLMDEGWLWHFRYGHLNFXXL 438

Query: 2877 XXXTMKNMVVWLPEMGELD-LCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKT 3053
                 KNMV  LP +     +CE C+ GKQ R   P GK WR  +  ELVH D+CG +  
Sbjct: 439  KTLQXKNMVTGLPXIQTXSQICEECVXGKQHRYQFPKGKSWRXNKVLELVHSDICGPINP 498

Query: 3054 ESLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGE 3233
             S GG  YF+ F  DYS   W YFL+ KSEAF  FK FK LVEK+    IK  R+D GGE
Sbjct: 499  TSNGGKRYFITFIXDYSWKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGE 558

Query: 3234 FLSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLN 3374
            + S  F  FCE +GI+ +LT  YSPQQNG +E KN T++ M  ++L+
Sbjct: 559  YTSQEFVNFCENHGIQKQLTAAYSPQQNGXSERKNXTILNMVXTILS 605



 Score = 44.3 bits (103), Expect(2) = 1e-06
 Identities = 19/47 (40%), Positives = 32/47 (68%)
 Frame = +3

Query: 1626 DFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +FETL M++ ESV D+  R   IV++M  +G++  D  ++ K+LRS+
Sbjct: 83   EFETLRMRSGESVTDYFSRTMAIVNKMXIHGDKTEDVTIVEKILRSM 129



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +2

Query: 1766 TPKFDHVVASIEESKYLSVFSFDELMGSLLANEDRLNR 1879
            TP F+ VV SIEES  +   S DEL  SLL +E + N+
Sbjct: 130  TPXFNFVVCSIEESHDIDELSIDELQSSLLVHERKFNQ 167


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  257 bits (657), Expect(2) = 3e-66
 Identities = 144/342 (42%), Positives = 202/342 (59%), Gaps = 1/342 (0%)
 Frame = +3

Query: 2349 NHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDVQL 2528
            N ANFS+E E   ++  +        D+VW IDSGC+NH+    +LFR++D S  + + +
Sbjct: 297  NRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHM 356

Query: 2529 GDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN*CI 2708
            G+    + EGKGT+A++T  G  K + DV LVP L  NLLS GQL+  GY+V F++  C 
Sbjct: 357  GNGSIAQSEGKGTVAVQTADGP-KFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCK 415

Query: 2709 VSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXXXT 2888
            + D K+ + +A + + +N  F L ++   + AL ++ V+ +                   
Sbjct: 416  ILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSE-VDISDLWHKRMGHLNYRALKLLR 474

Query: 2889 MKNMVVWLPEMG-ELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTESLG 3065
             K MV  LP +  + D CEGC+FGKQ R S P    WRA+   ELVH D+ G + T S G
Sbjct: 475  TKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHADIVGKVPTISEG 534

Query: 3066 GSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFLSN 3245
            G+ YF+ F DDY+ M W YFLK KS A E FKKFK +VE +++  IK LR+D+G E++S 
Sbjct: 535  GNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISK 594

Query: 3246 YFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
             F  +CE  GIR +LT  YS QQNGVAE KN T+  MA S+L
Sbjct: 595  EFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSML 636



 Score = 25.0 bits (53), Expect(2) = 3e-66
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 2282 CRYCKKFGHTEAYCWTTQKRLAESCK 2359
            C  C+K  HT   CW  +K     CK
Sbjct: 259  CDICQKSSHTTDMCW--KKMTCNKCK 282



 Score = 90.1 bits (222), Expect(2) = 4e-31
 Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1297 QPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDI---EEPDAEEERRLKEIRQKD 1467
            Q  +P+F GE Y+ WSI M+TL  SQ LWD+VE+G+ +    E   AE+++ L E R  D
Sbjct: 3    QSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSD 62

Query: 1468 AKALFFIQQAVHETIFSRIAAAATSRDAW 1554
            AKALF IQQ V E++F RI  A  S++AW
Sbjct: 63   AKALFLIQQGVAESLFPRIIGAKKSKEAW 91



 Score = 74.7 bits (182), Expect(2) = 4e-31
 Identities = 35/70 (50%), Positives = 51/70 (72%)
 Frame = +3

Query: 1557 DLKKKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDE 1736
            D  K++FQGS KV+ VK+Q+LR  F+ L MK +E V+D+  RV  IV+QM+ YGE++ D+
Sbjct: 92   DKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFSRVIEIVNQMRLYGEDINDQ 151

Query: 1737 IVISKVLRSL 1766
             V+ K+L SL
Sbjct: 152  KVVEKILISL 161


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  259 bits (663), Expect = 4e-66
 Identities = 144/347 (41%), Positives = 204/347 (58%), Gaps = 3/347 (0%)
 Frame = +3

Query: 2346 QNHANFSEEA--ENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSD 2519
            +  AN+ EE   E    L  ++ +     ++ W++DSG SNH+ G +S+F +LDES + +
Sbjct: 303  EEKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGN 362

Query: 2520 VQLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN 2699
            V LGD+ ++ V+GKG I I+   G+ + + +V  +P +  N+LS GQL+  GY +  K+N
Sbjct: 363  VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422

Query: 2700 *CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXX 2879
               + D +S   I  VP+++N MF LN+       L      E+                
Sbjct: 423  NLSIRDQESN-LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLE 481

Query: 2880 XXTMKNMVVWLPEMGELD-LCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTE 3056
              + K MV  LP +   + +CEGC+ GKQ + S P     RA +  EL+H D+CG +K +
Sbjct: 482  LLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPK 541

Query: 3057 SLGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEF 3236
            SLG S YFLLF DD+S   W YFLK KSE FE FKKFK  VEK++   IK +R+DRGGEF
Sbjct: 542  SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEF 601

Query: 3237 LSNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
             S  F  +CE+NGIR +LT P SPQQNGV E KN T++ MARS+L +
Sbjct: 602  TSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKS 648



 Score = 53.5 bits (127), Expect(2) = 1e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)
 Frame = +3

Query: 1434 REEIKRNQTEGRQSFVLYSTSRS*DNFLKNCSSCYLKRCLADLKKKKFQGSSKVIIVKIQ 1613
            ++ ++ ++   +++  L       D F K   +   K     L+   ++G+ +V  V++Q
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTS-YKGADQVKKVRLQ 114

Query: 1614 SLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +LR +FE L MK  E V D+  RV  + + +K  GE++ D  ++ KVLRSL
Sbjct: 115  TLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSL 165



 Score = 35.8 bits (81), Expect(2) = 1e-08
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 1772 KFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            KF+H+V  IEE+K L   + ++L+GSL A E++
Sbjct: 168  KFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEK 200



 Score = 63.9 bits (154), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +1

Query: 1267 MAANGMXXXXQPF-IPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERR 1443
            MA+N +     PF +P+     Y+ WS+ MK +  + ++W++VE GF++ E   +  + +
Sbjct: 1    MASNNV-----PFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQ 55

Query: 1444 ---LKEIRQKDAKALFFIQQAVHETIFSRIAAAATSRDAWQ 1557
               L++ R++D KAL  I Q + E  F ++  A ++++AW+
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWE 96


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  258 bits (659), Expect = 1e-65
 Identities = 143/339 (42%), Positives = 201/339 (59%), Gaps = 2/339 (0%)
 Frame = +3

Query: 2367 EEAENQSKLFMAHSQITNTTDN-VWFIDSGCSNHVTGIRSLFRDLDESQKSDVQLGDDKQ 2543
            E+ + +  L MA  +     +N  W++DSG SNH+ G +S+F +LDES + +V LGD+ +
Sbjct: 311  EKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESK 370

Query: 2544 VRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN*CIVSDIK 2723
            + V+GKG I I+   G+ + + +V  +P +  N+LS GQL+  GY +  K+N   + D +
Sbjct: 371  MEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQE 430

Query: 2724 SGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXXXTMKNMV 2903
            S   I  VP+++N MF LN+       L      E+                  + K MV
Sbjct: 431  SN-LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMV 489

Query: 2904 VWLPEMGELD-LCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTESLGGSLYF 3080
              LP +   + +CEGC+ GKQ + S P     RA +  EL+H D+CG +K +SLG S YF
Sbjct: 490  RGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYF 549

Query: 3081 LLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFLSNYFSLF 3260
            LLF DD+S   W YFLK KSE FE FKKFK  VEK++   IK +R+DRGGEF S  F  +
Sbjct: 550  LLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKY 609

Query: 3261 CEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
            CE+NGIR +LT P SPQQNGV E KN T++ MARS+L +
Sbjct: 610  CEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKS 648



 Score = 53.5 bits (127), Expect(2) = 1e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)
 Frame = +3

Query: 1434 REEIKRNQTEGRQSFVLYSTSRS*DNFLKNCSSCYLKRCLADLKKKKFQGSSKVIIVKIQ 1613
            ++ ++ ++   +++  L       D F K   +   K     L+   ++G+ +V  V++Q
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTS-YKGADQVKKVRLQ 114

Query: 1614 SLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +LR +FE L MK  E V D+  RV  + + +K  GE++ D  ++ KVLRSL
Sbjct: 115  TLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSL 165



 Score = 35.8 bits (81), Expect(2) = 1e-08
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 1772 KFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            KF+H+V  IEE+K L   + ++L+GSL A E++
Sbjct: 168  KFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEK 200



 Score = 63.9 bits (154), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +1

Query: 1267 MAANGMXXXXQPF-IPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERR 1443
            MA+N +     PF +P+     Y+ WS+ MK +  + ++W++VE GF++ E   +  + +
Sbjct: 1    MASNNV-----PFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQ 55

Query: 1444 ---LKEIRQKDAKALFFIQQAVHETIFSRIAAAATSRDAWQ 1557
               L++ R++D KAL  I Q + E  F ++  A ++++AW+
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWE 96


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  258 bits (658), Expect = 2e-65
 Identities = 143/344 (41%), Positives = 201/344 (58%), Gaps = 3/344 (0%)
 Frame = +3

Query: 2355 ANFSEEA--ENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDVQL 2528
            AN+ EE   E    L  ++ +     ++ W++DSG SNH+ G +S+F +LDES + +V L
Sbjct: 306  ANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVAL 365

Query: 2529 GDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN*CI 2708
            GD+ ++ V+GKG I I+   G+ + + +V  +P +  N+LS GQL+  GY +  K+N   
Sbjct: 366  GDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLS 425

Query: 2709 VSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXXXT 2888
            + D K    I  VP+++N MF LN+       L      E+                  +
Sbjct: 426  IRD-KESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLS 484

Query: 2889 MKNMVVWLPEMGELD-LCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTESLG 3065
             K MV  LP +   + +CEGC+ G Q + S P     RA +  EL+H D+CG +K +SLG
Sbjct: 485  RKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLG 544

Query: 3066 GSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFLSN 3245
             S YFLLF DD+S   W YFLK KSE FE FKKFK  VEK++   IK +R+D GGEF S 
Sbjct: 545  KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSK 604

Query: 3246 YFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
             F  +CE+NGIR +LT P SPQQNGVAE KN T++ MARS+L +
Sbjct: 605  EFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKS 648



 Score = 53.5 bits (127), Expect(2) = 1e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)
 Frame = +3

Query: 1434 REEIKRNQTEGRQSFVLYSTSRS*DNFLKNCSSCYLKRCLADLKKKKFQGSSKVIIVKIQ 1613
            ++ ++ ++   +++  L       D F K   +   K     L+   ++G+ +V  V++Q
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTS-YKGADQVKKVRLQ 114

Query: 1614 SLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDEIVISKVLRSL 1766
            +LR +FE L MK  E V D+  RV  + + +K  GE++ D  ++ KVLRSL
Sbjct: 115  TLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSL 165



 Score = 35.8 bits (81), Expect(2) = 1e-08
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 1772 KFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            KF+H+V  IEE+K L   + ++L+GSL A E++
Sbjct: 168  KFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEK 200



 Score = 63.9 bits (154), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +1

Query: 1267 MAANGMXXXXQPF-IPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPDAEEERR 1443
            MA+N +     PF +P+     Y+ WS+ MK +  + ++W++VE GF++ E   +  + +
Sbjct: 1    MASNNV-----PFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQ 55

Query: 1444 ---LKEIRQKDAKALFFIQQAVHETIFSRIAAAATSRDAWQ 1557
               L++ R++D KAL  I Q + E  F ++  A ++++AW+
Sbjct: 56   KDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWE 96


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1198

 Score =  257 bits (657), Expect = 2e-65
 Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 1/342 (0%)
 Frame = +3

Query: 2349 NHANFSEEAENQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDVQL 2528
            N ANFS+E E   ++  +        D+VW IDSGC+NH+    +LFR++D S  + + +
Sbjct: 248  NRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHM 307

Query: 2529 GDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN*CI 2708
            G+    + EGKGT+A++T  G  K + DV LVP L  NLLS GQL+  GY+V F++  C 
Sbjct: 308  GNGSIAQSEGKGTVAVQTADGP-KFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCK 366

Query: 2709 VSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXXXT 2888
            + D K+ + +A + + +N  F L ++   + AL ++ ++ +                   
Sbjct: 367  ILDRKNNRLVAKINMEKNINFLLRMNHPTQMALRSE-IDISDLWHKRMGHLNYRALKLLR 425

Query: 2889 MKNMVVWLPEMG-ELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTESLG 3065
             K MV  LP +  + D CEGC+FGKQ R S P    WRA+   ELVH D+ G + T S G
Sbjct: 426  TKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEG 485

Query: 3066 GSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFLSN 3245
            G+ YF+ F DDY+ M W YFLK KS A E FKKFK +VE +++  IK LR+D+GGE++S 
Sbjct: 486  GNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISK 545

Query: 3246 YFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
             F  +CE  GIR +LT  YS QQNGVAE KN T+  MA S+L
Sbjct: 546  EFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSML 587



 Score = 90.1 bits (222), Expect = 6e-15
 Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1297 QPFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDI---EEPDAEEERRLKEIRQKD 1467
            Q  +P+F GE Y+ WSI M+TL  SQ LWD+VE+G+ +    E   AE+++ L E R  D
Sbjct: 3    QSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSD 62

Query: 1468 AKALFFIQQAVHETIFSRIAAAATSRDAW 1554
            AKALF IQQ V E++F RI  A  S++AW
Sbjct: 63   AKALFLIQQGVAESLFPRIIGAKKSKEAW 91


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  246 bits (629), Expect(2) = 5e-65
 Identities = 140/344 (40%), Positives = 196/344 (56%), Gaps = 2/344 (0%)
 Frame = +3

Query: 2346 QNHANFSEEAENQSK-LFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDV 2522
            + HA+ + E +N  + LFMA   +++   N W IDSG ++H+T   S+F  +D S +  V
Sbjct: 1018 EQHASVTXEEKNDDEHLFMASQALSSHELNTWLIDSGXTSHMTKHLSIFTSIDRSVQPKV 1077

Query: 2523 QLGDDKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN* 2702
            +LG+ + V+ +GKGTIAI T +G  K++ +V  +P L  NLLS  Q++ +GY V FK N 
Sbjct: 1078 KLGNGEXVQAKGKGTIAISTKRGT-KIVTNVLYIPDLDQNLLSVAQMLRNGYXVSFKENF 1136

Query: 2703 CIVSDIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXX 2882
            C +SD+   +   +      N F L +  VE +   AK ++E+                 
Sbjct: 1137 CFISDVHGTEIXKIK--MNGNSFYLKLDLVEGHVFSAK-IDESVVWHKRYXHFNLKSLRF 1193

Query: 2883 XTMKNMVVWLPEMG-ELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTES 3059
                 MV  +PE+      CE C  GKQ R+  P     RA    EL+H D+CG M T S
Sbjct: 1194 MQEAXMVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTS 1253

Query: 3060 LGGSLYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFL 3239
            L  ++YF LF DD+S M W YFLK KS+    FK FK +VE ++   +K LRTD GGE+ 
Sbjct: 1254 LSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYT 1313

Query: 3240 SNYFSLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLL 3371
            S  FS+FC+E GI  +LT PYSPQ NGV+E KN TV+ MAR +L
Sbjct: 1314 SKEFSVFCQEAGIVHQLTAPYSPQXNGVSERKNRTVMEMARCML 1357



 Score = 31.6 bits (70), Expect(2) = 5e-65
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2276 FQCRYCKKFGHTEAYCWTTQKR 2341
            F C +C K GH+E YC   +K+
Sbjct: 991  FNCNFCNKLGHSEKYCRAKKKQ 1012



 Score = 48.5 bits (114), Expect(2) = 2e-10
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 1306 IPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDI---EEPDAEEERRLKEIRQKDAKA 1476
            IP+FNGE Y  W++ M+   RSQ LW++V            P   + +  +E + K  KA
Sbjct: 792  IPVFNGEHYHIWAVKMRFYLRSQGLWNVVMSEANPPPLGANPTVAQMKAYEEEKLKKDKA 851

Query: 1477 LFFIQQAVHETIFSRIAAAATSRDAW 1554
            +  +   + + IF++I    T +  W
Sbjct: 852  ITCLHSGLADHIFTKIMNLETPKQVW 877



 Score = 46.6 bits (109), Expect(2) = 2e-10
 Identities = 22/60 (36%), Positives = 41/60 (68%)
 Frame = +3

Query: 1557 DLKKKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDE 1736
            D  + +F+GS +V  V++ +L+ +FE + MK++ESV+D+  R+  +V+QM+  GE   D+
Sbjct: 878  DKLQGEFEGSERVKNVRLLTLKREFELMKMKDDESVKDYSGRLMDVVNQMRLLGEAFTDQ 937


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  251 bits (641), Expect = 2e-63
 Identities = 138/342 (40%), Positives = 190/342 (55%), Gaps = 2/342 (0%)
 Frame = +3

Query: 2358 NFSEEAE-NQSKLFMAHSQITNTTDNVWFIDSGCSNHVTGIRSLFRDLDESQKSDVQLGD 2534
            N + E E N+  L MA  ++    D +W++DSG SNH+ G   LF+D+ + +   V  GD
Sbjct: 329  NLALEVETNEGVLLMAQDEVNINNDTLWYLDSGASNHMCGHEYLFKDMQKIEDGHVSFGD 388

Query: 2535 DKQVRVEGKGTIAIKTMQGNVKLLCDVQLVPGLAHNLLSAGQLMASGYSVLFKNN*CIVS 2714
              +V V+G+GT+      G +  L DV  VP L  N+LS GQL   GYS+  K+    + 
Sbjct: 389  ASKVEVKGRGTVCYLQKDGLIGSLQDVYYVPDLKTNILSMGQLTEKGYSIFLKDRFLHLK 448

Query: 2715 DIKSGQTIAVVPITQNNMFPLNVSTVEKNALIAKGVNETQXXXXXXXXXXXXXXXXXTMK 2894
            + K G  +A + + +N M+ LN+ ++ +  L     ++                     K
Sbjct: 449  N-KQGCLVARIEMARNRMYKLNLRSIREKCLQVNIEDKASLWHLRFGHLHHGGLKELAKK 507

Query: 2895 NMVVWLPEMG-ELDLCEGCIFGKQSRKSLPIGK*WRAARCFELVHGDLCGAMKTESLGGS 3071
            NMV  LP M  E   CE C+  K  R S P    + A +  EL+H D+CG +  ES  G 
Sbjct: 508  NMVHGLPNMDYEGKFCEECVLSKHVRTSFPKKAQYWAKQPLELIHTDICGPITPESFSGK 567

Query: 3072 LYFLLFTDDYSLMNWAYFLKFKSEAFENFKKFKTLVEKKTSCNIKALRTDRGGEFLSNYF 3251
             YF+ F DD+S   W YFLK KSEAFE FKKFK +VE+ T   IKA+R+DRGGE+ S  F
Sbjct: 568  RYFITFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVERTTDKQIKAVRSDRGGEYTSTTF 627

Query: 3252 SLFCEENGIRMELTTPYSPQQNGVAEPKNGTVV*MARSLLNA 3377
              +CEE GIR  LT PY+PQQNGVAE KN T++ M RS+L +
Sbjct: 628  MEYCEEQGIRRFLTAPYTPQQNGVAERKNRTILDMVRSMLKS 669



 Score = 77.4 bits (189), Expect(3) = 5e-28
 Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 6/96 (6%)
 Frame = +1

Query: 1300 PFIPIFNGEKYEFWSINMKTLFRSQELWDLVEDGFVDIEEPD------AEEERRLKEIRQ 1461
            P   +    +Y+ WSI MK L  SQ+ W++VE+GF   EEP       A + + LKE+R 
Sbjct: 9    PLPRLTKATRYDNWSIQMKALLGSQDSWEVVEEGF---EEPTNTTGYTAAQTKALKEMRS 65

Query: 1462 KDAKALFFIQQAVHETIFSRIAAAATSRDAWQI*KK 1569
            KD  AL+ + +AV E IF +IA A+TS++AW I +K
Sbjct: 66   KDKAALYMLYRAVDEAIFEKIAGASTSKEAWDILEK 101



 Score = 60.5 bits (145), Expect(3) = 5e-28
 Identities = 28/73 (38%), Positives = 48/73 (65%)
 Frame = +3

Query: 1557 DLKKKKFQGSSKVIIVKIQSLRHDFETLFMKNNESVQDFLLRVSGIVSQMKSYGEEVGDE 1736
            D+ +K F+G+ +V  V++Q+LR + E + M  +ESV D++ RV  +V+Q+   GE + D 
Sbjct: 97   DILEKVFKGADRVKQVRLQTLRGELENMKMMESESVSDYITRVQAVVNQLNRNGETLTDA 156

Query: 1737 IVISKVLRSLLQN 1775
             V+ K+LR+L  N
Sbjct: 157  RVVEKILRTLTDN 169



 Score = 37.0 bits (84), Expect(3) = 5e-28
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +2

Query: 1766 TPKFDHVVASIEESKYLSVFSFDELMGSLLANEDR 1870
            T  F+ +V +IEESK L+  + DEL GSL A+E R
Sbjct: 167  TDNFESIVCAIEESKDLATLTVDELAGSLEAHEQR 201