BLASTX nr result
ID: Atropa21_contig00003795
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00003795
(3789 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 310 0.0
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 286 e-166
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 202 e-111
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 212 e-111
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 211 e-109
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 198 e-105
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 202 2e-98
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 184 6e-98
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 184 6e-98
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 177 1e-95
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 223 2e-95
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 170 7e-92
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 191 2e-90
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 236 1e-87
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 204 3e-85
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 202 4e-83
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 194 2e-82
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 162 2e-81
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 181 3e-80
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 167 5e-80
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 310 bits (795), Expect(5) = 0.0
Identities = 166/505 (32%), Positives = 283/505 (56%), Gaps = 2/505 (0%)
Frame = +2
Query: 380 WKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTV 559
W + NY +P GRI +GW V + V+ T Q+I +K+ + +YGL+T+
Sbjct: 55 WSWINNYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTI 114
Query: 560 DERMELWDSLRTIHSSMSRPWLILGDVNSLLAVDDRIHGNPIHISETVDFQACVDDIGLG 739
+R LW+ L S P +++GD N++ + DR++GN + +ET D ++ V L
Sbjct: 115 ADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLL 174
Query: 740 QVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPILLNI 919
+ G Y+W NK DR+ S ID F N W+ QY ++ +Y G SDHSP++ N+
Sbjct: 175 EAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLIFNL 234
Query: 920 VHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRVTECHMFGVWKKLQHIEQATRHI-SK 1096
+ RP++ L L +Q+ + +VV + W + M +W +LQ +++A + SK
Sbjct: 235 ATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSK 294
Query: 1097 ECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTI-QKVLRQKSRV 1273
+ S ++ L +KL+ +Q + ++ ++L +E++ I QL KW TI + +L+QKSR+
Sbjct: 295 KFSKAHCQVEELRRKLAAVQALPEVSQV-SELQEEEKDLIAQLRKWSTIDESILKQKSRI 353
Query: 1274 VWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKLMGDTNP 1453
W ++GD NSK F +K R++RN+I + N++G ++T+ +Q E F+++L+G ++
Sbjct: 354 QWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSS 413
Query: 1454 ELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSYPVEFFKDYW 1633
+L ID + + G P+ +++ +L I + KA G+D + FFK W
Sbjct: 414 QLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSW 473
Query: 1634 PLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFATLYKLISKV 1813
+ ++I +L FF+NG + + IN T V +PK+ + KD+RPIAC +TLYK+ISK+
Sbjct: 474 LVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKI 533
Query: 1814 ITARLETVIDTLVGQSQYTFIEEEH 1888
+T RL+ VI +V +Q FI E H
Sbjct: 534 LTKRLQAVITEVVDCAQTGFIPERH 558
Score = 220 bits (560), Expect(5) = 0.0
Identities = 103/224 (45%), Positives = 150/224 (66%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F A++G+RQGDP+SP++F L+MEYL+R + + PEF +HP+C ++ L H+ FAD LLM
Sbjct: 638 FDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLM 697
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
RA+ +SI + FN FS+ L+A +EKS +Y G+ + ++L + +GSLP
Sbjct: 698 FARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPF 757
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLGVPL+S+KL SQC PL+++I R + W + LSY GRLQL+K++L MQ YW Q+F
Sbjct: 758 RYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIF 817
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
LPKK++ + C+ FL T + + KA VAWD + QPK GG
Sbjct: 818 PLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGG 861
Score = 120 bits (301), Expect(5) = 0.0
Identities = 62/167 (37%), Positives = 89/167 (53%)
Frame = +3
Query: 2793 GLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKGINFDQTPTPKQASWVVRKI 2972
GLN+ N LWNKAAI KLL + K+++L V W++AYY+K N + SW++RKI
Sbjct: 861 GLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKI 920
Query: 2973 FEARKWWADGDDWSRSLDTVATTGKFKIQKIYRSLLPQFSKVTWKNLVICQGMLPMHQFI 3152
FE+R+ W + V+ F I+K Y+ L + V WK L+ P QFI
Sbjct: 921 FESRELLTRTGGW----EAVSNHMNFSIKKTYKLLQEDYENVVWKRLICNNKATPKSQFI 976
Query: 3153 LWLSLHNRLATVDRIMK*GIQADPNCVLCATSAEENHDQNNFLMCFF 3293
LWL++ NRLAT +R+ + P C +C E Q+ F C +
Sbjct: 977 LWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIET--IQHLFFNCIY 1021
Score = 88.6 bits (218), Expect(5) = 0.0
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A ELI +++V+PRC++KV+IRKAYDSVEW FL+ +L E G P ++WIM CV V
Sbjct: 566 ATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVS 625
Query: 2088 YSLLINGGLTTKFFCQK 2138
YS+L+NG + F QK
Sbjct: 626 YSILLNGIPSIPFDAQK 642
Score = 48.9 bits (115), Expect(5) = 0.0
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 220 MIISSWNIKGLNQLFKEKELKAFVQKNKVSLLSCLDTKVKLNKSPKIVRNMG 375
M I++WN++GLN K KE+K F+ K+SL S +T+V+ S KI + G
Sbjct: 1 MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFG 52
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 286 bits (731), Expect(4) = e-166
Identities = 166/511 (32%), Positives = 266/511 (52%), Gaps = 7/511 (1%)
Frame = +2
Query: 377 EWKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNT 556
+WK+ NY+ + RI IGWR A V VT+ HT QL+ C I+D + +YGL+T
Sbjct: 54 DWKWLNNYSHSARERIWIGWRPAWVNVTLTHTQEQLMVCDIQDQSHKL--KMVAVYGLHT 111
Query: 557 VDERMELWDSLRTIHSSMSRPWLILGDVNSLLAVDDRIHGNPIHISETVDFQACVDDIGL 736
+ +R LW L P +I+GD N++ +DR++G + +ET DFQ + L
Sbjct: 112 IADRKSLWSGLLQCVQQQD-PMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNL 170
Query: 737 GQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPILLN 916
+ Y+W N DRV S ID + N W+ Y + YL PG SDHSP+L N
Sbjct: 171 IESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHSPLLFN 230
Query: 917 IVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRVTECHMFGVWKKLQHIEQATRHISK 1096
++ + +P++ + V+ EQ ++ + V + W + + +W L+ +++ + +
Sbjct: 231 LMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLNLKAVKRELKQMKT 290
Query: 1097 ECSNLDKKLGVLHQKLS----KIQDMIKLDPF--NAQLISDERETIQQLHKWDTIQ-KVL 1255
+ K+G+ H+K+ ++QD+ D F N + +D + + L W I+ +L
Sbjct: 291 Q------KIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQTDAKSIMNDLRHWSHIEDSIL 344
Query: 1256 RQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKL 1435
+QKSR+ W GD NSK+F +KAR + NRI + E G + D VQ E L F++KL
Sbjct: 345 QQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKL 404
Query: 1436 MGDTNPELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSYPVE 1615
+G L +D + G C V ++ +L I NDKA G+D +
Sbjct: 405 LGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAY 464
Query: 1616 FFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFATLY 1795
FFK W ++I A + +FF N ++ + IN V +PKV + T VK+FRPIAC +Y
Sbjct: 465 FFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIY 524
Query: 1796 KLISKVITARLETVIDTLVGQSQYTFIEEEH 1888
K+ISK++T R++ +I +V ++Q FI H
Sbjct: 525 KIISKMLTNRMKGIIGEVVNEAQSGFIPGRH 555
Score = 236 bits (601), Expect(4) = e-166
Identities = 116/235 (49%), Positives = 156/235 (66%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F A++G+RQGDPMSP++F L MEYL+R L++LK P+F +HP+C +L++ H+ FAD LLM
Sbjct: 635 FQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLM 694
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
CRA+K+S+ M F FS L A EKS++Y G+ D+ +L +H LG LP
Sbjct: 695 FCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPF 754
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLGVPL+S+KLT +QC PLVE I R + W +K LSY GRLQLIKS+L MQ YWA +F
Sbjct: 755 RYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIF 814
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG*TYLISSYGTR 2829
L KK++ + VC+ FL T E +KA VAW T+ +PK GG + Y R
Sbjct: 815 PLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNR 869
Score = 92.8 bits (229), Expect(4) = e-166
Identities = 44/77 (57%), Positives = 57/77 (74%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A ELI +K+++PRCI+KV+IRKAYDSVEW+FL+ +L EFG P R V WIM CV+ V
Sbjct: 563 ASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVS 622
Query: 2088 YSLLINGGLTTKFFCQK 2138
YS+L+NG T F +K
Sbjct: 623 YSVLVNGIPTQPFQARK 639
Score = 45.1 bits (105), Expect(4) = e-166
Identities = 18/52 (34%), Positives = 34/52 (65%)
Frame = +1
Query: 220 MIISSWNIKGLNQLFKEKELKAFVQKNKVSLLSCLDTKVKLNKSPKIVRNMG 375
M+ SWN++G+N FK KE+K F+ +K+ + + L+T+V+ + K+ +G
Sbjct: 1 MLCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLG 52
Score = 115 bits (287), Expect = 2e-22
Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Frame = +3
Query: 2793 GLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKGINFDQTPTPKQASWVVRKI 2972
G N++N WN+AA+ KLL + K+++L V WIH+YY+K + Q +W++RKI
Sbjct: 858 GWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKI 917
Query: 2973 FEARKWWADGDDWSRSLDTVATTGKFKIQKIYRSLLPQFSKVTWKNLVICQGMLPMHQFI 3152
+AR ++ DW D + KF ++K Y+ + +V W+ L+ P +FI
Sbjct: 918 VKARDHLSNIGDW----DEICIGDKFSMKKAYKKISENGERVRWRRLICNNYATPKSKFI 973
Query: 3153 LWLSLHNRLATVDRIMK*GIQADPNCVLCATSAEENHDQNNFLMCFF------KIC 3302
LW+ LH RL TVDRI + G+Q D N LC E Q+ F C + KIC
Sbjct: 974 LWMMLHERLPTVDRISRWGVQCDLNYRLCRNDGET--IQHLFFSCSYSAGVWSKIC 1027
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 202 bits (514), Expect(4) = e-111
Identities = 148/534 (27%), Positives = 252/534 (47%), Gaps = 28/534 (5%)
Frame = +2
Query: 365 EIWVEWKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIK---DMDTSFCNSIT 535
+++ +W NY GRI + WR V ++ ++ + QL+ C +K D FC+
Sbjct: 50 KLFKDWSILTNYEHNRRGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCS--- 105
Query: 536 FLYGLNTVDERMELWDSLRTIHSS---MSRPWLILGDVNSLLAVDDRIHG--NPIHISET 700
F+Y N V+ER LW L+ + S +PW +LGD N L + + +P+
Sbjct: 106 FVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGM 165
Query: 701 VDFQACVDDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLN 880
DFQ ++ L + +G +TW NKR+ G + +D V N W Q + + +
Sbjct: 166 RDFQQVINYCSLTDMAAQGPLFTWCNKREHG-LIMKKLDRVLINDCWNQTFSQSYSVFEA 224
Query: 881 PGCSDHSPILLNI-VHIVHKTK--RPYRLLTVLLEQDKYKKVV*QCWETR----VTECHM 1039
GCSDH +++ +K + +P++ + L + + +K +V W+ ++ +
Sbjct: 225 GGCSDHLRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTL 284
Query: 1040 FGVWKKLQHIEQATRHISKE-CSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETI 1216
F K L+ ++ R ++++ NL KK ++ L Q + +P + + E
Sbjct: 285 FRFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAM----EEEN 340
Query: 1217 QQLHKWDTI----QKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKV 1384
+WD + +K L+QKS++ W VGD N+K FH AR++ N I I + G+
Sbjct: 341 AAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVK 400
Query: 1385 TDPVLVQTEFLGFFQKLM--------GDTNPELPCIDTIIAKDGPCXXXXXXXXXXVPVI 1540
T ++ E FF++ + G T EL + + D PV
Sbjct: 401 TKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIR------PVT 454
Query: 1541 KEKVHLSLKAIPNDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTV 1720
E++ L +P+DK+ G D Y EFFK W + G + V FF G L + INST +
Sbjct: 455 AEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTIL 514
Query: 1721 IFVPKVPNPTYVKDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFIEE 1882
+PK +KD+RPI+C LYK+ISK+I RL+ V+ + +Q F+++
Sbjct: 515 ALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKD 568
Score = 177 bits (448), Expect(4) = e-111
Identities = 85/224 (37%), Positives = 137/224 (61%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + RG+RQG +SPY+FV+ M+ L++ L + F YHP+C + L H+ FAD L++
Sbjct: 650 FQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMV 709
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
SI + + F+ F++ L+ +EKS++Y+AG+ R+++ FS G LP+
Sbjct: 710 LSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPV 769
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL +++L+ + CLPL+E++ RI W S+FLSY GRL LI SVL + +W F
Sbjct: 770 RYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAF 829
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
LP+K + + +C FL + + KA ++W +C+PK GG
Sbjct: 830 RLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGG 873
Score = 63.5 bits (153), Expect(4) = e-111
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ + ++ RC +K++I KA+DSV+W FL V G P + WI C+T
Sbjct: 578 ATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTAS 637
Query: 2088 YSLLINGGLTTKF 2126
+S+ +NG L F
Sbjct: 638 FSVQVNGELAGYF 650
Score = 33.9 bits (76), Expect(4) = e-111
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 235 WNIKGLNQLFKEKELKAFVQKNKVSLLSCLDTKVKLNKSPKIV 363
WN++GLN+ K +K ++++N ++T+VK +K ++V
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLV 48
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 212 bits (540), Expect(5) = e-111
Identities = 150/520 (28%), Positives = 247/520 (47%), Gaps = 21/520 (4%)
Frame = +2
Query: 380 WKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTV 559
W F NY F+ G+I + W + V V V+ + Q+I C + + ++ +Y N V
Sbjct: 57 WSFVENYAFSDLGKIWVMWDPS-VQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEV 115
Query: 560 DERMELW-DSLRTIHSSM--SRPWLILGDVNSLLAVDDRIHGNPIHISETV---DFQACV 721
R ELW + + + S + RPWL+LGD N +L + H NP+ ++ + DF+ C+
Sbjct: 116 ASRKELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQE--HSNPVSLNVDINMRDFRDCL 173
Query: 722 DDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHS 901
L + +G +TW NK V ID + N W + + + + SDH
Sbjct: 174 LAAELSDLRYKGNTFTWWNKSHTTP-VAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHV 232
Query: 902 PILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWET-RVTECHMFGVWKKLQHIEQA 1078
+ + K KRP++ LL+ + +V W T V MF V KKL+ +++
Sbjct: 233 SCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKP 292
Query: 1079 TRHISK-ECSNLDKKLGVLHQKLSKIQDMIKLDP--FNAQLISDERETIQQLHKWDTI-- 1243
+ S+ S L+K+ H L QD DP NA ++ KW +
Sbjct: 293 IKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASF------ELEAERKWHILTA 346
Query: 1244 --QKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFL 1417
+ RQKSR+ W A GD N+K FH AR S N IS++Y+ G V +
Sbjct: 347 AEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCA 406
Query: 1418 GFFQKLMGDTNPELPCIDTIIAKDGPCXXXXXXXXXXVPVIK-------EKVHLSLKAIP 1576
+F L+GD +D + + V + E + +L ++P
Sbjct: 407 SYFGSLLGDE------VDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLP 460
Query: 1577 NDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYV 1756
+K+ G D + EFF D W + G ++ + +FF +G LL++ N+TT++ +PK+ NPT
Sbjct: 461 RNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCT 520
Query: 1757 KDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFI 1876
DFRPI+C TLYK+I++++T RL+ ++ ++ +Q F+
Sbjct: 521 SDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFL 560
Score = 166 bits (420), Expect(5) = e-111
Identities = 86/224 (38%), Positives = 131/224 (58%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + +G+RQGDP+SPY+FVLAME + L YHP+ + LS+ H+ FAD +++
Sbjct: 644 FKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMI 703
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
S+H + + + F+ LK +KS LY+AG+ + L F +G+LPI
Sbjct: 704 FFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGL-NQLESNANAAYGFPIGTLPI 762
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL +RKL +++ PL+E+I AR + W +K LS+ GR+QLI SV+ +W F
Sbjct: 763 RYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTF 822
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
LLPK + I +C FL + + E + V+W +C PK GG
Sbjct: 823 LLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGG 866
Score = 60.8 bits (146), Expect(5) = e-111
Identities = 24/68 (35%), Positives = 43/68 (63%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A +L++ N++PR ++KV+++KA+DSV W F+ L IP + + WI C++
Sbjct: 572 ATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPT 631
Query: 2088 YSLLINGG 2111
+++ INGG
Sbjct: 632 FTVSINGG 639
Score = 30.0 bits (66), Expect(5) = e-111
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 235 WNIKGLNQLFKEKELKAFVQKNKVSLLSCLDTKVKLNKSPKIV 363
WNI+G N + K +V+ NK ++T VK K K +
Sbjct: 8 WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFI 50
Score = 28.1 bits (61), Expect(5) = e-111
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +3
Query: 2793 GLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKGINFDQTPTPKQASWVVRKI 2972
GL + WNK +L+ + K+ L W H +++ +F + SW +++
Sbjct: 866 GLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRL 925
Query: 2973 FEAR 2984
R
Sbjct: 926 LSLR 929
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 211 bits (537), Expect(5) = e-109
Identities = 148/511 (28%), Positives = 247/511 (48%), Gaps = 11/511 (2%)
Frame = +2
Query: 380 WKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTV 559
WK NY FA GRI + W A V VTV+ + Q I C +K S +TF+Y +N
Sbjct: 56 WKSVCNYEFAALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCR 114
Query: 560 DERMELWDSLRTIHSSMS---RPWLILGDVNSLLAVDDRIHGNPIHISETVDFQACVDDI 730
R LW L + ++ + +PW+ILGD N L D G +F+ C+
Sbjct: 115 YGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTS 174
Query: 731 GLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPIL 910
+ + RG YTW N ++ + + ID + N W+ + SDH P
Sbjct: 175 NISDLPFRGNHYTWWNNQE-NNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSC 233
Query: 911 LNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRVTE-CHMFGVWKKLQHIEQATRH 1087
+NI + +P++L L+ ++ + + W+ + MF + KK + ++ R
Sbjct: 234 VNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRT 293
Query: 1088 ISKE-CSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTI----QKV 1252
++E S L+K++ Q L Q+ + P ++ L E+E + W + ++
Sbjct: 294 FNREHYSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRS---WAELALAEERF 349
Query: 1253 LRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQK 1432
L QKSRV+W GD N+ FH + AR++ N I + ++ G ++ + +QT + FF++
Sbjct: 350 LCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKE 409
Query: 1433 LMGDTNPELPC--IDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSY 1606
L G ++ + I I + V + + A+P++K+ G D Y
Sbjct: 410 LFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGY 469
Query: 1607 PVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFA 1786
EFFK W + G +IA V +FF++G+LL + NST V VPK PN + +FRPI+C
Sbjct: 470 TSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCN 529
Query: 1787 TLYKLISKVITARLETVIDTLVGQSQYTFIE 1879
+YK+ISK++ RLE ++ + SQ F++
Sbjct: 530 AIYKVISKLLARRLENILPLWISPSQSAFVK 560
Score = 144 bits (362), Expect(5) = e-109
Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 2/226 (0%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F +G+RQGDP+SP +FV+AME L+R L+ + YHP+ +++ + + FAD L++
Sbjct: 643 FKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMI 702
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
+S+ + F + L+ EKS++Y AG+ D ++ L F G+ P
Sbjct: 703 FYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLA-FGFVNGTFPF 761
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL RKL S L+++I AR W +K LS+ GRLQLI SV+ +W F
Sbjct: 762 RYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSF 821
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKA--LVAWDTMCQPKYIGG 2796
+LPK L I +C FL N+ R+ V+W C PK GG
Sbjct: 822 ILPKCCLKTIEQMCNRFL--WGNDITRRGDIKVSWQNSCLPKAEGG 865
Score = 63.5 bits (153), Expect(5) = e-109
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ GQ N++ R ++KV++RKA+DSV W F+ L P R V WI C+T
Sbjct: 571 ATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTS 630
Query: 2088 YSLLINGGLTTKF 2126
+S+ ++G L F
Sbjct: 631 FSINVSGSLCGYF 643
Score = 41.2 bits (95), Expect(5) = e-109
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 2781 KVYWGLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKGINFDQTPTPKQASWV 2960
K GL + NF+ WNK +L+ + +++ L V+W HA ++ +NF SW+
Sbjct: 861 KAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWI 920
Query: 2961 VRKIFEAR 2984
+ I R
Sbjct: 921 WKAILGLR 928
Score = 29.6 bits (65), Expect(5) = e-109
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 232 SWNIKGLNQLFKEKELKAFVQKNKVSLLSCLDTKVKLNKS 351
SWN++G N + + + + + +K S L+T+VK +++
Sbjct: 6 SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRA 45
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 198 bits (503), Expect(3) = e-105
Identities = 140/467 (29%), Positives = 228/467 (48%), Gaps = 25/467 (5%)
Frame = +2
Query: 557 VDERMELWDSLRTIHSS---MSRPWLILGDVNSLLAVDDRIHG--NPIHISETVDFQACV 721
++ER ELW+ LR S S+PW+I GD N +L +++ + NP+ + DFQ V
Sbjct: 1 MEERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAV 60
Query: 722 DDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHS 901
+ + + G +TW NKR+ D + +D V N W+Q + + + GCSDH
Sbjct: 61 NHCSITDLAYHGPLFTWSNKRE-NDLIAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHL 119
Query: 902 PILLNI---VHIVHKTKRPYRLLTVLLEQDKYKKVV*QCW-ETR---VTECHMFGVWKKL 1060
+N+ V K KRP++ + V+ E + + V W ET ++ +F KKL
Sbjct: 120 RCRINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKL 179
Query: 1061 QHIEQATRHISKE-CSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWD 1237
+ ++ R++ KE NL K+ + L + Q M +P + + +E + KWD
Sbjct: 180 KGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSM----QEENEAYAKWD 235
Query: 1238 TI----QKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQ 1405
I +K L+Q+S++ W +GD N+K FH + AR+++N I I G + ++
Sbjct: 236 HIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIK 295
Query: 1406 TE----FLGFFQKLMGDTN----PELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLS 1561
TE F F Q + D EL + D V E++H
Sbjct: 296 TEAEHHFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNH------VSAEEIHKV 349
Query: 1562 LKAIPNDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVP 1741
+ ++PNDK+ G D Y EF+K W + G + I + FF G L + INST + +PK
Sbjct: 350 VFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKK 409
Query: 1742 NPTYVKDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFIEE 1882
+KD+RPI+C LYK+ISK+I RL+ V+ + +Q F+++
Sbjct: 410 EAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKD 456
Score = 177 bits (448), Expect(3) = e-105
Identities = 84/220 (38%), Positives = 137/220 (62%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
FS+ R +RQG +SPY+FV++M+ L++ L + +F YHP+C + L H+ FAD L++
Sbjct: 538 FSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMI 597
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
SI + + F++ LK MEKS++Y+AG+ + +++Q+ F +G LP+
Sbjct: 598 LSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPV 657
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL S++LT S CLPL+E++ +I+ W S+FLS+ GRL LI S L + +W F
Sbjct: 658 RYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAF 717
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPK 2784
LP+ + I +C FL + + KA V+W+ +C+PK
Sbjct: 718 RLPRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPK 757
Score = 60.5 bits (145), Expect(3) = e-105
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A E++ + +V+ RC +K++I KA+DSV+W FL VL P WI C+T
Sbjct: 466 ATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTAS 525
Query: 2088 YSLLINGGLTTKF 2126
+S+ +NG L F
Sbjct: 526 FSVQVNGELAGVF 538
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 202 bits (514), Expect(5) = 2e-98
Identities = 135/511 (26%), Positives = 243/511 (47%), Gaps = 11/511 (2%)
Frame = +2
Query: 380 WKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTV 559
W+ NY + GRI I W + + V V T Q++ C IK ++ F+YG N+
Sbjct: 55 WRMDSNYCCSELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSE 113
Query: 560 DERMELWDSL----RTIHSSMSRPWLILGDVNSLLAVDDR--IHGNPIHISETVDFQACV 721
+R LW+ + RT S++ PWL+LGD N + A + I+ + +++ D Q C+
Sbjct: 114 LDRRSLWEDILVLSRTSPLSVT-PWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCL 172
Query: 722 DDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHS 901
D L + RG +TW N + + + +D N W + + A + PG SDH+
Sbjct: 173 RDSQLSDLPSRGVFFTWSNHQQ-DNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHA 231
Query: 902 PILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETR-VTECHMFGVWKKLQHIEQA 1078
P ++ I + +K+ ++ + L Y + WE + HMF + + L+ +
Sbjct: 232 PCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLC 291
Query: 1079 TRHISK-ECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTIQKVL 1255
R +++ SN+ ++ +L IQ + P + + Q + ++
Sbjct: 292 CRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALESFF 351
Query: 1256 RQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKL 1435
RQKSR+ W GD N++ FH + A Q+ N I + + G +V + ++ + ++ L
Sbjct: 352 RQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHL 411
Query: 1436 MGDTNPELPCIDTIIAKD---GPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSY 1606
+G + + K C +P +E++ L ++P +KA G D +
Sbjct: 412 LGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPS-EEEITQVLFSMPRNKAPGPDGF 470
Query: 1607 PVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFA 1786
PVEFF + W + ++A + +FF +G L + N+T + +PKV + FRP+AC
Sbjct: 471 PVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCT 530
Query: 1787 TLYKLISKVITARLETVIDTLVGQSQYTFIE 1879
T+YK+I+++I+ RL+ ID V +Q FI+
Sbjct: 531 TIYKVITRIISRRLKLFIDQAVQANQVGFIK 561
Score = 145 bits (367), Expect(5) = 2e-98
Identities = 82/224 (36%), Positives = 121/224 (54%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F K+GIRQGDPMS ++FVL M+ L++ L F HP C + H+ FAD +L+
Sbjct: 644 FQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLV 703
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
+SI + + F + L EK+ L + G L L + GSLP+
Sbjct: 704 FSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPV 763
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLGVPL S+K+ PLV+RI +R W ++ LS+ GRLQL+KSV+ +WA VF
Sbjct: 764 RYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVF 823
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
+ P + L + +C FL + + R A ++W+ +C PK GG
Sbjct: 824 IFPNQCLQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGG 867
Score = 53.1 bits (126), Expect(5) = 2e-98
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+++ T R ++V+I KAYD+V W FL +L +P + WI C++
Sbjct: 572 ASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSAS 631
Query: 2088 YSLLINGGL 2114
YS+ NG L
Sbjct: 632 YSIAFNGEL 640
Score = 27.7 bits (60), Expect(5) = 2e-98
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 220 MIISSWNIKGLNQLFKEKELKAFVQKNKVSLLSCLDTKV 336
M + WNI+GLN +++ +++++ N + + L+T V
Sbjct: 1 MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHV 39
Score = 23.9 bits (50), Expect(5) = 2e-98
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 2775 STKVYWGLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKGINF 2924
S K GL + WN+ KL+ + L VSW+ + + NF
Sbjct: 861 SPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLWVSWVRLHLIGRRNF 910
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 184 bits (466), Expect(3) = 6e-98
Identities = 115/433 (26%), Positives = 216/433 (49%), Gaps = 16/433 (3%)
Frame = +2
Query: 626 ILGDVNSLLAVDDRIHGNP--IHISETV-DFQACVDDIGLGQVTRRGC*YTWINKRDVGD 796
+LGD N +L + H NP ++I + DF +C+ ++ L + +G +TW NK +
Sbjct: 1 MLGDFNQVLLPQE--HSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRP 58
Query: 797 RVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPILLNIVHIVHKTKRPYRLLTVLLE 976
+ +D + N W Y + + N SDH + + KRP++ LL+
Sbjct: 59 -IAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLK 117
Query: 977 QDKYKKVV*QCW-ETRVTECHMFGVWKKLQHIEQATRHISK-ECSNLDKKLGVLHQKLSK 1150
+ + VV W T V M+ V KKL+ +++ + S+ S ++ + H+ L
Sbjct: 118 NEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLIT 177
Query: 1151 IQDMIKLDPFNAQLISDERETIQQLHKWDTI----QKVLRQKSRVVWTAVGDYNSKIFHA 1318
Q++ +P +S+ ++ KW + + Q+SRV W A GD N+ FH
Sbjct: 178 CQNLTLANPS----VSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHR 233
Query: 1319 HLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKLMGDTNP-------ELPCIDTI 1477
+ +R+S N I+S+ + G+ + + + ++++L+G ++ + T
Sbjct: 234 MVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTY 293
Query: 1478 IAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSYPVEFFKDYWPLTGKDII 1657
C +++ + K++P +K G D Y VEFF+D W + G +++
Sbjct: 294 RCSQDQCSELEKSFTD------DEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVL 347
Query: 1658 AIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFATLYKLISKVITARLETV 1837
A + +FF +G+LL++ N+TT++ +PK N + +FRPI+C TLYK+ISK++T+RL+ +
Sbjct: 348 AAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGL 407
Query: 1838 IDTLVGQSQYTFI 1876
+ ++G SQ F+
Sbjct: 408 LSAVIGHSQSAFL 420
Score = 162 bits (411), Expect(3) = 6e-98
Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 1/225 (0%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + +G+RQGDP+SPY+FVLAME ++ L + YHP+ LS+ H+ FAD +++
Sbjct: 504 FRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMI 563
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELH-FSLGSLP 2481
+S+H + + + F++ LK +KS L+ AG+ DL +++ + F G+ P
Sbjct: 564 FFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL--DLSERITSAAYGFPAGTFP 621
Query: 2482 IKYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQV 2661
I+YLG+PL RKL ++ PL+E++ AR++ W SK LS+ GR QLI SV+ + +W
Sbjct: 622 IRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMST 681
Query: 2662 FLLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
FLLPK + I +C FL S + + + V+W C PK GG
Sbjct: 682 FLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGG 726
Score = 63.2 bits (152), Expect(3) = 6e-98
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A E+++ + N++PR ++KV+++KA+DSV+W F+ L IP R + WI C+T
Sbjct: 432 ATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPS 491
Query: 2088 YSLLINGGLTTKFF 2129
+++ +NG T FF
Sbjct: 492 FTISVNGA-TGGFF 504
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 184 bits (466), Expect(3) = 6e-98
Identities = 115/433 (26%), Positives = 216/433 (49%), Gaps = 16/433 (3%)
Frame = +2
Query: 626 ILGDVNSLLAVDDRIHGNP--IHISETV-DFQACVDDIGLGQVTRRGC*YTWINKRDVGD 796
+LGD N +L + H NP ++I + DF +C+ ++ L + +G +TW NK +
Sbjct: 1 MLGDFNQVLLPQE--HSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRP 58
Query: 797 RVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPILLNIVHIVHKTKRPYRLLTVLLE 976
+ +D + N W Y + + N SDH + + KRP++ LL+
Sbjct: 59 -IAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLK 117
Query: 977 QDKYKKVV*QCW-ETRVTECHMFGVWKKLQHIEQATRHISK-ECSNLDKKLGVLHQKLSK 1150
+ + VV W T V M+ V KKL+ +++ + S+ S ++ + H+ L
Sbjct: 118 NEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLIT 177
Query: 1151 IQDMIKLDPFNAQLISDERETIQQLHKWDTI----QKVLRQKSRVVWTAVGDYNSKIFHA 1318
Q++ +P +S+ ++ KW + + Q+SRV W A GD N+ FH
Sbjct: 178 CQNLTLANPS----VSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHR 233
Query: 1319 HLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKLMGDTNP-------ELPCIDTI 1477
+ +R+S N I+S+ + G+ + + + ++++L+G ++ + T
Sbjct: 234 MVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTY 293
Query: 1478 IAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSYPVEFFKDYWPLTGKDII 1657
C +++ + K++P +K G D Y VEFF+D W + G +++
Sbjct: 294 RCSQDQCSELEKSFTD------DEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVL 347
Query: 1658 AIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFATLYKLISKVITARLETV 1837
A + +FF +G+LL++ N+TT++ +PK N + +FRPI+C TLYK+ISK++T+RL+ +
Sbjct: 348 AAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGL 407
Query: 1838 IDTLVGQSQYTFI 1876
+ ++G SQ F+
Sbjct: 408 LSAVIGHSQSAFL 420
Score = 162 bits (411), Expect(3) = 6e-98
Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 1/225 (0%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + +G+RQGDP+SPY+FVLAME ++ L + YHP+ LS+ H+ FAD +++
Sbjct: 504 FRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMI 563
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELH-FSLGSLP 2481
+S+H + + + F++ LK +KS L+ AG+ DL +++ + F G+ P
Sbjct: 564 FFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL--DLSERITSAAYGFPAGTFP 621
Query: 2482 IKYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQV 2661
I+YLG+PL RKL ++ PL+E++ AR++ W SK LS+ GR QLI SV+ + +W
Sbjct: 622 IRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMST 681
Query: 2662 FLLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
FLLPK + I +C FL S + + + V+W C PK GG
Sbjct: 682 FLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGG 726
Score = 63.2 bits (152), Expect(3) = 6e-98
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A E+++ + N++PR ++KV+++KA+DSV+W F+ L IP R + WI C+T
Sbjct: 432 ATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPS 491
Query: 2088 YSLLINGGLTTKFF 2129
+++ +NG T FF
Sbjct: 492 FTISVNGA-TGGFF 504
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 177 bits (450), Expect(3) = 1e-95
Identities = 124/461 (26%), Positives = 219/461 (47%), Gaps = 12/461 (2%)
Frame = +2
Query: 530 ITFLYGLNTVDERMELWDSLRTIHSS---MSRPWLILGDVNSLLAVDDRIHGNPIHISE- 697
++F+Y R LW+ + + + +PW +LGD N +L + + ++
Sbjct: 3 LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62
Query: 698 TVDFQACVDDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYL 877
T F+ + L ++ RG +TW NKR V +D + N W + + +
Sbjct: 63 TRIFRETILLASLTDLSFRGNTFTWWNKRSRAP-VAKKLDRILVNDKWTTTFPSSLGLFG 121
Query: 878 NPGCSDHSPILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCW-ETRVTECHMFGVWK 1054
P SDHS L+++ ++K+P+R LL+ + + ++ W T VT M+ V
Sbjct: 122 EPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSV 181
Query: 1055 KLQHIEQATRHISKE-CSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHK 1231
KL+ +++ R S++ S+++K+ H L Q ++ P + + E ET + K
Sbjct: 182 KLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNA-AIEAETQR---K 237
Query: 1232 WDTIQKV----LRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVL 1399
W + + Q+SRV W GD NS FH ARQS N I + + G ++
Sbjct: 238 WRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQN 297
Query: 1400 VQTEFLGFFQKLMGDTN--PELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAI 1573
++ + +FQ +G P D C P E++ + ++
Sbjct: 298 LENHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLD-TPFSSEQIKNAFFSL 356
Query: 1574 PNDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTY 1753
P +KA G D + EFF WP+ G ++ + +FF +GKLL++ N+T ++ +PK+ N +
Sbjct: 357 PRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASS 416
Query: 1754 VKDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFI 1876
+ DFRPI+C T+YK+ISK++T RL+ + + SQ F+
Sbjct: 417 MSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFM 457
Score = 159 bits (403), Expect(3) = 1e-95
Identities = 84/224 (37%), Positives = 127/224 (56%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + +G+RQGDPMSPY+FVLAME + L+ YHP+ ++L + H+ FAD +++
Sbjct: 541 FWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMI 600
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
+S+H + + F+ L K+ LY AG+ D + F LGSLP+
Sbjct: 601 FFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMAS-YGFKLGSLPV 659
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL SRKLT+++ PL+E+I AR W + LS+ GR+QL+ SV+ + +W F
Sbjct: 660 RYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSF 719
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
+LP + I +C FL + + A VAW +C PK GG
Sbjct: 720 ILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGG 763
Score = 64.7 bits (156), Expect(3) = 1e-95
Identities = 26/77 (33%), Positives = 46/77 (59%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL++ +KN+ P ++KV++RKA+DSV W F+ L +P + WI+ C++
Sbjct: 469 ATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTAS 528
Query: 2088 YSLLINGGLTTKFFCQK 2138
+S+++NG F+ K
Sbjct: 529 FSVILNGHSAGHFWSSK 545
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 223 bits (568), Expect(3) = 2e-95
Identities = 153/485 (31%), Positives = 235/485 (48%), Gaps = 14/485 (2%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNV-PEFKYHPRCAKLSLVHVCFADYLL 2301
F+ +RG+RQGDP+SPY+FV+AME L+ +++ N P F+YH RC +L+L H+CFAD LL
Sbjct: 471 FARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLL 530
Query: 2302 MCCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLP 2481
M C ++ S+ + F++F + LKA + +S +++AG+ + D +LQ +FSLG+ P
Sbjct: 531 MFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCP 590
Query: 2482 IKYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQV 2661
++YLG+PL + KL + C PL++RI RIK W +K LS+ GRLQLI+SVL +Q YWA
Sbjct: 591 VRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASH 650
Query: 2662 FLLPKKILSLITGVCKNFL--*TCSNEFFRKALVAWDTMCQPKYIGG*TYLISSYGTRQQ 2835
+LPKK+L I + FL CS K VAW +C PK GG +
Sbjct: 651 LILPKKVLKDIEKRLRCFLWAGNCSGRAATK--VAWSEICLPKCEGGLGIKDLHCWNKAL 708
Query: 2836 YASYYXXXXXXXXGYECHGFMLIM*KGLTLIKLP-----------LLNKQVGL*GKFLKQ 2982
S+ + + + KG + P LL + F+
Sbjct: 709 MISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNI 768
Query: 2983 GNGGLMVMIGAEVWILLLQLGSSKSRRYIDHSCLSFPKSLGRI*SYVKVCCLCTNSFYGC 3162
G + + W L L S I S LS K L N FY
Sbjct: 769 IGDGRATSLWFDNWHPLGPLTLRWSSNIIGESGLS------------KSAMLTPNGFYST 816
Query: 3163 HCITD*LRWIGS*NEVYKLILIVYCVLQALKKTMIKITF*CAFSKYVWHAILSWVGVQRQ 3342
+ LR + I+ Y ++ + +T + F CA+S +W +LS V +
Sbjct: 817 SSAWNTLR-------PSRFIVPWYRLVWFVAETHNHLFFDCAYSFGIWTHVLSKCDVSKP 869
Query: 3343 IGSWVEEVHWLTSMIKPHKPKTLILGFLFAAIIYHVWLERNYRRFQQNKKSKEAILKEIA 3522
+ W + + W+ + K + +IL A++Y +W ERN RRF+ + K I
Sbjct: 870 LLPWSDFIFWVATNWKGNSLPVVILKLALQAVVYAIWRERNNRRFRNESLPPAVVFKGIV 929
Query: 3523 LQLHI 3537
+ +
Sbjct: 930 ESIRL 934
Score = 118 bits (295), Expect(3) = 2e-95
Identities = 91/341 (26%), Positives = 144/341 (42%), Gaps = 6/341 (1%)
Frame = +2
Query: 872 YLNPGCSDHSPILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRVTECHMFGVW 1051
+L PG SDH+ +++ + K P++ L +++ + +V W T V F VW
Sbjct: 141 FLPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVSAVWATNVWGSKQFQVW 200
Query: 1052 KKLQHIEQATRHISKECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHK 1231
+KL+ ++ + L
Sbjct: 201 RKLKLVKNQFK----------------------------------------------LLN 214
Query: 1232 WDTIQKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTE 1411
+ ++K+L++KSRV W GD NS F + ++RNRI++I G
Sbjct: 215 CNVVEKLLKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRSDG------------ 262
Query: 1412 FLGFFQKLMGDTNPELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAI-----P 1576
P+L AK + E H ++A+ P
Sbjct: 263 -------------PDL-------AKS---------------LCNEFTHDDIRAVFFSMNP 287
Query: 1577 NDKARGVDSYPVEFFKDYWPLTGKDIIAI-VLQFFQNGKLLQEINSTTVIFVPKVPNPTY 1753
N K+ G D + FF+ W + G +++A V +FF G LL E+NST + VPKV NPT
Sbjct: 288 N-KSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTT 346
Query: 1754 VKDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFI 1876
+ DFRPI+C T YK+I+K++ RL+ + +VG SQ TFI
Sbjct: 347 MSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFI 387
Score = 60.1 bits (144), Expect(3) = 2e-95
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A E+I + + PRC V++ KA D+VEW F+ L F IP ++ WI +C++ K
Sbjct: 399 AQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAK 458
Query: 2088 YSLLINGGLTTKFFCQKR 2141
+S+ +NG L FF ++R
Sbjct: 459 FSVCVNGEL-AGFFARRR 475
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 170 bits (430), Expect(3) = 7e-92
Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 1/226 (0%)
Frame = +1
Query: 2122 SFSAK-RGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYL 2298
SFS + G+RQG +SPY+FV+ M L+ L + F YHPRC + L H+CFAD +
Sbjct: 903 SFSVQVNGLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDI 962
Query: 2299 LMCCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSL 2478
++ + S+ + F F+ L +EKS+L++A I + +L F GSL
Sbjct: 963 MVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSL 1022
Query: 2479 PIKYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQ 2658
P++YLG+PL ++++T++ CLPL+E+I +RI W ++FLSY GRLQL+ SV+ + +W
Sbjct: 1023 PVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWIS 1082
Query: 2659 VFLLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
F LP+ + I + FL + ++ KA VAW +C+PK GG
Sbjct: 1083 AFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGG 1128
Score = 157 bits (396), Expect(3) = 7e-92
Identities = 127/520 (24%), Positives = 229/520 (44%), Gaps = 14/520 (2%)
Frame = +2
Query: 365 EIWVEWKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIK--DMDTSFCNSITF 538
+++ +W+ NY F GRI + W ++ V + V+ +SQ+I C ++ D F S F
Sbjct: 352 KVFKDWQMVSNYEFNRLGRIWVVW-SSSVQLQVIFKSSQMIVCLVRVEHYDVEFICS--F 408
Query: 539 LYGLNTVDERMELWDSLRTIHSSM---SRPWLILGDVNSLLAVDDR--IHGNPIHISETV 703
+Y N V+ER +LW L + +S+ ++PWL+ GD N L +++ +P+
Sbjct: 409 IYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMVTPGMR 468
Query: 704 DFQACVDDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNP 883
DFQ V L + G +TW NKR+ G + +D V N + Y + +
Sbjct: 469 DFQIVVRYCSLEDMRTHGPLFTWGNKRNEG-LICKKLDRVLLNPEYNSAYPHSYCIMDSG 527
Query: 884 GCSDHSPILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRV----TECHMFGVW 1051
GCSDH ++ + K K P++ V+ ++ V W+ + +F
Sbjct: 528 GCSDHLRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFS 587
Query: 1052 KKLQHIEQATRHISK-ECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLH 1228
KKL+ ++ + +S+ S+L ++ +++L + Q L N I DE +
Sbjct: 588 KKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTK-SLTTLNPHDIVDESLAFE--- 643
Query: 1229 KWDTIQKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQT 1408
+W+ K R N I + + QG + + ++
Sbjct: 644 RWE-----------------------------KERHLLNAIHEVMDPQGTRPPNQDDIKI 674
Query: 1409 EFLGFFQKLMGDTNPELP--CIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPND 1582
E + FF L+ + +D + + + +V +IP +
Sbjct: 675 EAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLN 734
Query: 1583 KARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKD 1762
K+ G D Y VEFF++ W + G+++ + FF G L + +NST + +PK +KD
Sbjct: 735 KSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKD 794
Query: 1763 FRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFIEE 1882
+RPI+C LYK ISK++ RL+ ++ + +Q FI +
Sbjct: 795 YRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISD 834
Score = 62.4 bits (150), Expect(3) = 7e-92
Identities = 24/67 (35%), Positives = 41/67 (61%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ + ++PRC +K+++ KA+DSV+W FL L IP + + WI C++
Sbjct: 844 ASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTAS 903
Query: 2088 YSLLING 2108
+S+ +NG
Sbjct: 904 FSVQVNG 910
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 191 bits (486), Expect(3) = 2e-90
Identities = 127/465 (27%), Positives = 230/465 (49%), Gaps = 16/465 (3%)
Frame = +2
Query: 530 ITFLYGLNTVDERMELWDSLRTIHSSMS---RPWLILGDVNSLLAVDDRIHGNPIHISET 700
++ +Y N R ELW+ L + S+S +PW++LGD N +L + ++++
Sbjct: 55 VSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRR 114
Query: 701 VD-FQACVDDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYL 877
+ F+ C+ + L + +G +TW NK V +D + N W ++ + A +
Sbjct: 115 MKVFRDCLFEAELCDLVFKGNTFTWWNKSATRP-VAKKLDRILVNESWCSRFPSAYAVFG 173
Query: 878 NPGCSDHSPILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWET-RVTECHMFGVWK 1054
P SDH+ + I ++H+ KRP+R LL+ + +V + W + V MF + K
Sbjct: 174 EPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSK 233
Query: 1055 KLQHIEQATRHISKE-CSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHK 1231
KL+ ++ R S E SNL+K++ H + Q+ DP I + ++ K
Sbjct: 234 KLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDP----TIPNAALEMEAQRK 289
Query: 1232 WDTIQKVLR----QKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVL 1399
W + K Q+SRV W GD N+ FH +R++ N I I ++ GVK+ +
Sbjct: 290 WLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLG 349
Query: 1400 VQTEFLGFFQKLMGDT--NPELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAI 1573
++ + +F L+G P L D + C + ++ + + +
Sbjct: 350 IKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELA-MSFSRQDIKSAFFSF 408
Query: 1574 PNDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTY 1753
P++K G D +PVEFFK+ W + G ++ V +FF + LL++ N+TT++ +PK+ N +
Sbjct: 409 PSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASK 468
Query: 1754 VKDFRPIACF----ATLYKLISKVITARLETVIDTLVGQSQYTFI 1876
+ DFRPI+C TLYK+I++++T RL+ ++ ++ Q F+
Sbjct: 469 MNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFL 513
Score = 127 bits (319), Expect(3) = 2e-90
Identities = 72/224 (32%), Positives = 118/224 (52%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + RG+RQG+P+SP++FVLAME + L YHP+ + LS+ H+ FAD +++
Sbjct: 597 FKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMV 656
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
+S+H + + F+ L EK+ LY+AG+ D + +
Sbjct: 657 FFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGL-DRIEASTI------------ 703
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+RKL +++ PL+E++ R + W+ K LS+ GR+QLI SV+ + +W F
Sbjct: 704 --------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTF 755
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
+LPK + I +C FL + + + + A VAW +C PK GG
Sbjct: 756 ILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGG 799
Score = 65.9 bits (159), Expect(3) = 2e-90
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ ++N+ PR ++KV++RKA+DS+ W F+ L GIP R V WI C++
Sbjct: 525 ATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPT 584
Query: 2088 YSLLINGGLTTKFFCQKR 2141
+S+ +NG T FF R
Sbjct: 585 FSVCVNGN-TGGFFKSTR 601
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 236 bits (602), Expect(3) = 1e-87
Identities = 111/224 (49%), Positives = 159/224 (70%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F A +G+RQGDPMSP++F +AMEYL+R LK LK FKYHP+ AKL + H+CFAD LL+
Sbjct: 443 FDAAKGLRQGDPMSPFLFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLL 502
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
R + SI A+ + F FS+ L+A + KSS+Y G+ ++R +++Q+L +++ LP
Sbjct: 503 FSRGDLNSIKALQKCFTEFSQASGLQANLNKSSIYCGGVQMEVRQQIIQQLGYTIEELPF 562
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
KYLGVPLSS+KL Q PL+E+++ARI W +K LSY GR QL+K+VL +Q WAQ+F
Sbjct: 563 KYLGVPLSSKKLNTIQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLF 622
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
++P KI+ LI G+C+++L + +KAL+AWD +C PKY GG
Sbjct: 623 IIPAKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPKYEGG 666
Score = 84.3 bits (207), Expect(3) = 1e-87
Identities = 35/77 (45%), Positives = 53/77 (68%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
AHEL+ + +KNV+PRC++K+++ KAYDSVEW FL+ V+ G P +W+M CV V
Sbjct: 371 AHELVKAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQVMEGLGFPDLFTKWVMKCVKTVN 430
Query: 2088 YSLLINGGLTTKFFCQK 2138
Y++++NG T +F K
Sbjct: 431 YTIVVNGQNTQRFDAAK 447
Score = 55.1 bits (131), Expect(3) = 1e-87
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +3
Query: 2775 STKVYWGLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKG 2915
S K GL ++N +WN++A+ KL D+A K+++L + WIHAYY+KG
Sbjct: 660 SPKYEGGLGLINLKIWNRSAVTKLCWDLANKEDKLWIKWIHAYYIKG 706
Score = 137 bits (345), Expect = 4e-29
Identities = 89/348 (25%), Positives = 158/348 (45%), Gaps = 2/348 (0%)
Frame = +2
Query: 551 NTVDERMELWDSLRTIHSSMSRPWLILGDVNSLLAVDDRIHGNPIHISETVDFQACVDDI 730
N + R LW + I S++ PW+I+GD+N++L+ DR+ G P++ +E DF CV +
Sbjct: 50 NYKNARKSLWSDMIQIGKSVNHPWIIVGDLNAMLSPKDRLAGVPVNENEIKDFSNCVKVM 109
Query: 731 GLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPIL 910
GL + R+ S ID FGN WM ++G++ +Y NPG S HSP+
Sbjct: 110 GLNESGNA--------------RISSRIDRAFGNEDWMDEWGHVILEYGNPGVSYHSPMH 155
Query: 911 LNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRVTECHMFGVWKKLQHIEQATRHI 1090
L + + K ++ + E + + +V + W+ + M VW KL+ ++ +
Sbjct: 156 LILQQSYQQIKVNFKFFNIWTEHESFLDLVEKVWKQEKGKDSMKMVWNKLKALQHVLKQF 215
Query: 1091 -SKECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTIQK-VLRQK 1264
++E + K++ L ++Q+ + + LI E+E + +L KW +++ LR K
Sbjct: 216 NNREFKFISKQIDEARTDLEEVQNQLS-NQAKDDLIGKEKELLTKLEKWSMLEENALRWK 274
Query: 1265 SRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKLMGD 1444
+ +P +Q EF+ F++ LMG
Sbjct: 275 D--------------------------------------LYEPQEIQNEFVSFYKSLMGT 296
Query: 1445 TNPELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKA 1588
LP I+T + K GP +I++++ +LK+I NDKA
Sbjct: 297 VADRLPAINTQVMKRGPVLSIQHRIQLCATIIEQEIIEALKSIGNDKA 344
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 204 bits (518), Expect(3) = 3e-85
Identities = 141/513 (27%), Positives = 249/513 (48%), Gaps = 14/513 (2%)
Frame = +2
Query: 380 WKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTV 559
W F NY F+ G+I + W + V V ++ + Q+I C + ++ I+ +Y N
Sbjct: 49 WFFDENYGFSDLGKIWVLWDPS-VEVVIVAKSLQMITCEVLFPNSRTWIVISVVYAANED 107
Query: 560 DERMELWDSLRTIHSS---MSRPWLILGDVNSLLAVDDRIHGNPIHISETV-DFQACVDD 727
D+R ELW + + +S +RPW++LGD N +L + +++ + DF+ C+ D
Sbjct: 108 DKRKELWREITALVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLD 167
Query: 728 IGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSP- 904
L + +G +TW NK V ID + N W + + + P SDH+
Sbjct: 168 AELSDLVYKGSSFTWWNKSKTRP-VAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASC 226
Query: 905 -ILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCW-ETRVTECHMFGVWKKLQHIEQA 1078
++L + I K KRP++ LL+ ++ +V W T V MF V KKL+ +++
Sbjct: 227 GVVLELDPI--KAKRPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKP 284
Query: 1079 TRHISK-ECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTI---- 1243
+ S+ SNL+K+ H+ L Q++ +P + + ++ KW +
Sbjct: 285 IKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPS----LENAAHELEAQRKWQILATAE 340
Query: 1244 QKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGF 1423
+ RQ+SRV W A GD N++ FH +R+S N I+++ ++ G ++ + +
Sbjct: 341 ESFFRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALY 400
Query: 1424 FQKLMGDTNP--ELPCIDTIIAKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGV 1597
F+ L+ D N L D + C + E + + +P++KA G
Sbjct: 401 FENLLSDDNDPYSLEQDDMNLLLTYRCPYSQVADLEAM-FSDEDIKAAFFGLPSNKACGP 459
Query: 1598 DSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIA 1777
D +PV A V +FF +G LL++ N+TT++ +PK PN + DFRPI+
Sbjct: 460 DGFPVT--------------AAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPIS 505
Query: 1778 CFATLYKLISKVITARLETVIDTLVGQSQYTFI 1876
C TLYK+I++++T RL+ ++ ++ SQ F+
Sbjct: 506 CMNTLYKVIARLLTDRLQKLLSCVISPSQSAFL 538
Score = 103 bits (256), Expect(3) = 3e-85
Identities = 53/143 (37%), Positives = 85/143 (59%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + +G+RQGDP+SPY+FVLAME ++ L + +YHP+ + LS+ H+ FAD +++
Sbjct: 622 FKSAKGLRQGDPLSPYLFVLAMEVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMI 681
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
+S+H + + F+ LK +KS + AG+ R+ L F G LPI
Sbjct: 682 FFDGGSSSLHGICETLEDFASWSGLKVNNDKSHFFCAGLEQAERNS-LAAYGFPQGCLPI 740
Query: 2485 KYLGVPLSSRKLTVSQCLPLVER 2553
+YLG+PL RKL +++ PL+E+
Sbjct: 741 RYLGLPLMCRKLRIAEYEPLLEK 763
Score = 60.1 bits (144), Expect(3) = 3e-85
Identities = 23/67 (34%), Positives = 44/67 (65%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A E+++ +N++ R ++KV++RKA+DSV W F+ LL G+P + + WI C++
Sbjct: 550 ATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIAALLALGVPTKFINWIHQCISTPT 609
Query: 2088 YSLLING 2108
+++ +NG
Sbjct: 610 FTVSVNG 616
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 202 bits (513), Expect(3) = 4e-83
Identities = 135/511 (26%), Positives = 243/511 (47%), Gaps = 11/511 (2%)
Frame = +2
Query: 380 WKFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTV 559
W+ NY + GRI I W + + V V T Q++ C IK ++ F+YG N+
Sbjct: 98 WRMDSNYCCSELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSE 156
Query: 560 DERMELWDSL----RTIHSSMSRPWLILGDVNSLLAVDDR--IHGNPIHISETVDFQACV 721
+R LW+ + RT S++ PWL+LGD N + A + I+ + +++ D Q C+
Sbjct: 157 LDRRSLWEDILVLSRTSPLSVT-PWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCL 215
Query: 722 DDIGLGQVTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHS 901
D L + RG +TW N + + + +D N W + + A + PG SDH+
Sbjct: 216 RDSQLSDLPSRGVFFTWSNHQQ-DNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHA 274
Query: 902 PILLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETR-VTECHMFGVWKKLQHIEQA 1078
P ++ I + +K+ ++ + L Y + WE + HMF + + L+ +
Sbjct: 275 PCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLC 334
Query: 1079 TRHISK-ECSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTIQKVL 1255
R +++ SN+ ++ +L IQ + P + + Q + ++
Sbjct: 335 CRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALESFF 394
Query: 1256 RQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKL 1435
RQKSR+ W GD N++ FH + A Q+ N I + + G +V + ++ + ++ L
Sbjct: 395 RQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHL 454
Query: 1436 MGDTNPELPCIDTIIAKD---GPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSY 1606
+G + + K C +P +E++ L ++P +KA G D +
Sbjct: 455 LGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPS-EEEITQVLFSMPRNKAPGPDGF 513
Query: 1607 PVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFA 1786
PVEFF + W + ++A + +FF +G L + N+T + +PKV + FRP+AC
Sbjct: 514 PVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCT 573
Query: 1787 TLYKLISKVITARLETVIDTLVGQSQYTFIE 1879
T+YK+I+++I+ RL+ ID V +Q FI+
Sbjct: 574 TIYKVITRIISRRLKLFIDQAVQANQVGFIK 604
Score = 105 bits (261), Expect(3) = 4e-83
Identities = 62/165 (37%), Positives = 89/165 (53%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F K+GIRQGDPMS ++FVL M+ L++ L F HP C + H+ FAD +L+
Sbjct: 687 FQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLV 746
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
+SI + + F + L EK+ L + G L L + GSLP+
Sbjct: 747 FSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPV 806
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLI 2619
+YLGVPL S+K+ PLV+RI +R W ++ LS+ GRLQL+
Sbjct: 807 RYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLL 851
Score = 53.1 bits (126), Expect(3) = 4e-83
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+++ T R ++V+I KAYD+V W FL +L +P + WI C++
Sbjct: 615 ASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSAS 674
Query: 2088 YSLLINGGL 2114
YS+ NG L
Sbjct: 675 YSIAFNGEL 683
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 194 bits (493), Expect(3) = 2e-82
Identities = 90/222 (40%), Positives = 138/222 (62%)
Frame = +1
Query: 2131 AKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLMCC 2310
A+RGIRQGDP+SP +F+L MEYLNR L QL +P F YH +C K+ + ++CFAD LL+
Sbjct: 465 ARRGIRQGDPISPLLFILVMEYLNRILSQLDKIPNFNYHSKCEKMKITNLCFADDLLLFS 524
Query: 2311 RANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPIKY 2490
R + S+ M +FN F L K ++Y + +++++LL F G +P +Y
Sbjct: 525 RGDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVKEQLLLISGFKEGKMPFRY 584
Query: 2491 LGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVFLL 2670
LG+PLSS+KL + L+++I+ RI W++ LSY GR+QLI+SV+ +W Q L
Sbjct: 585 LGIPLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYAGRVQLIQSVIFATINFWMQCLPL 644
Query: 2671 PKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
PK ++ I +C++FL ++ RK+ +AW+ +C PK GG
Sbjct: 645 PKFVIMRINAICRSFLWIGNSNISRKSPIAWEKVCSPKINGG 686
Score = 105 bits (261), Expect(3) = 2e-82
Identities = 55/163 (33%), Positives = 85/163 (52%)
Frame = +3
Query: 2775 STKVYWGLNILNFFLWNKAAICKLL*DVAKKKERL*VSWIHAYYVKGINFDQTPTPKQAS 2954
S K+ GLNI+N +WNK +I KLL +V K + L + W+H YY++G + K S
Sbjct: 680 SPKINGGLNIINLAIWNKISILKLLWNVCNKSDNLWIKWLHTYYIRGQSIWSMVLKKSHS 739
Query: 2955 WVVRKIFEARKWWADGDDWSRSLDTVATTGKFKIQKIYRSLLPQFSKVTWKNLVICQGML 3134
W++ + + R SR D FK++KIY +L + K++W+ L+
Sbjct: 740 WIMSSMMKLRPLLLQYQ--SRMQDV------FKMKKIYLALFEESEKMSWRTLMCNNLAR 791
Query: 3135 PMHQFILWLSLHNRLATVDRIMK*GIQADPNCVLCATSAEENH 3263
P F LW + H RLA+ DR++K G+ D NC C++ H
Sbjct: 792 PRALFCLWQACHFRLASKDRLIKFGLNVDANCAFCSSMESHEH 834
Score = 58.5 bits (140), Expect(3) = 2e-82
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +1
Query: 3277 F*CAFSKYVWHAILSWVGVQRQIGSWVEEVHWLTSMIKPHKPKTLILGFLFAAIIYHVWL 3456
F C K +W A+L+W+ + +W EE++W+T K + ++L F IYH+W
Sbjct: 837 FGCIELKTIWTAVLNWLQIIHMPSTWSEELNWITRKCKGKGWRAMLLKCAFTETIYHIWA 896
Query: 3457 ERNYRRF---QQNKKSKEAILKEI 3519
RN+R F N+K +++I+ I
Sbjct: 897 YRNHRVFGGNVNNRKVEDSIINTI 920
Score = 181 bits (458), Expect = 3e-42
Identities = 103/360 (28%), Positives = 182/360 (50%), Gaps = 1/360 (0%)
Frame = +2
Query: 383 KFSYNYNFAPNGRI*IGWRTAQVVVTVMHTTSQLIHCYIKDMDTSFCNSITFLYGLNTVD 562
K+ NY+ NGRI W ++V++ + +TSQLIHC + + + F + T +Y LN +D
Sbjct: 2 KYLDNYDKHENGRIWFIWDDSKVMIKHICSTSQLIHCGVYNPNGDFLHWCTAIYALNHLD 61
Query: 563 ERMELWDSLRTIHSSMSRPWLILGDVNSLLAVDDRIHGNPIHISETVDFQACVDDIGLGQ 742
+R +LW + + + PW +LGD N++L +DRI G + SE VD + + +GL +
Sbjct: 62 DRRKLWKDIEDLRVQQADPWCLLGDFNNVLKAEDRIGGRDVTESEYVDLREMMSRVGLYE 121
Query: 743 VTRRGC*YTWINKRDVGDRVYSHIDWVFGNAGWMQQYGNIEADYLNPGCSDHSPILLNIV 922
+ G +TW NK+ + +YS ID GN W+Q + + L P SDH+ + L+
Sbjct: 122 MDTCGDFFTWTNKQ-ADNTIYSRIDRFLGNLNWLQMHIDSTLKILAPSVSDHALMFLSCK 180
Query: 923 HIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETRVTECHMFGVWKKLQHIEQATRHISKEC 1102
+ + ++ L + + V + W V M+ +W KL ++ +++S
Sbjct: 181 DQSSRLRGRFKYRNSLARLNGFHDEVKKNWNLGVHGNPMYKLWTKLSRLQSVLKNLSSPL 240
Query: 1103 SNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERETIQQLHKWDTIQ-KVLRQKSRVVW 1279
+ L +K+ + L + + + D FN I+ ++ +L + + ++ LRQK+++ W
Sbjct: 241 NGLREKIDEARRNLQQAHEDLCRDRFNVDNINRVKDRTSELLQLNELEDSDLRQKAKINW 300
Query: 1280 TAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKLMGDTNPEL 1459
GD N+ FHA +K R N I S+ E G +T ++ E L F+ L+G L
Sbjct: 301 IRQGDGNNSYFHATIKGRYKHNAIRSLIKEDGSCITSHEDIEEEVLKFYSALLGSRESNL 360
Score = 66.2 bits (160), Expect = 1e-07
Identities = 32/90 (35%), Positives = 52/90 (57%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ +K+ TP+C+++++I+KAYD+V W L+ +L E G P + ++WIM V V
Sbjct: 391 AFELLRGYERKHGTPKCMLQIDIQKAYDTVHWDALEHILRELGFPDQFIKWIMIAVRSVT 450
Query: 2088 YSLLINGGLTTKFFCQKRDKAR*PYVTLCF 2177
Y ING T + ++ + P L F
Sbjct: 451 YVFNINGRFTRRLEARRGIRQGDPISPLLF 480
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 162 bits (409), Expect(3) = 2e-81
Identities = 79/224 (35%), Positives = 130/224 (58%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + RG+RQG +SPY+FV+ M L+ + + YHP+C K+ L H+CFAD L++
Sbjct: 947 FGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMV 1006
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
++ SI + F F+ L+ +EKS++Y+AG+ R + L F+ G LP+
Sbjct: 1007 FVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPV 1066
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL ++++T + PL+E + +I W ++ LSY GRL L+ SV++ + +W +
Sbjct: 1067 RYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAY 1126
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
LP + I +C FL + +KA +AW ++CQPK GG
Sbjct: 1127 RLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGG 1170
Score = 130 bits (327), Expect(3) = 2e-81
Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 8/345 (2%)
Frame = +2
Query: 872 YLNPGCSDHSPI-LLNIVHIVHKTKRPYRLLTVLLEQDKYKKVV*QCWETR----VTECH 1036
Y PG D I L + ++P++ + VL + ++ VV W + V+
Sbjct: 521 YTPPGMRDFQEIGRLMLEAAATGGRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSA 580
Query: 1037 MFGVWKKLQHIEQATRHISKE-CSNLDKKLGVLHQKLSKIQDMIKLDPFNAQLISDERET 1213
++ KKL+ ++ R + KE +L K+ H L + Q +P + + +
Sbjct: 581 LYRFSKKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAEELKAY 640
Query: 1214 IQQLHKWDTIQKVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDP 1393
H + + L+QKS++ W VGD N+ FH + R+ RN I I +
Sbjct: 641 TDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTS 700
Query: 1394 VLVQTEFLGFFQKLMGDTNPELPCIDTIIAKDGPCXXXXXXXXXXVP--VIKEKVHLSLK 1567
++ E FF + + + + I ++ + V E++ L
Sbjct: 701 EEIKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLF 760
Query: 1568 AIPNDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNP 1747
A+PN+K+ G D Y EFFK W LTG D IA + FF G L + +N+T + +PK
Sbjct: 761 AMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEA 820
Query: 1748 TYVKDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFIEE 1882
+KD+RPI+C LYK+ISK++ RL+ ++ + + Q+Q F++E
Sbjct: 821 IEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKE 865
Score = 62.4 bits (150), Expect(3) = 2e-81
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ +++VTPRC +K++I KA+DSV+W FL L P WI C++
Sbjct: 875 ATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTAT 934
Query: 2088 YSLLINGGLTTKF 2126
+S+ +NG L F
Sbjct: 935 FSVQVNGELAGFF 947
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 181 bits (458), Expect(3) = 3e-80
Identities = 89/224 (39%), Positives = 135/224 (60%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F + RG+RQG +SPY+FV++M+ L+R L + EF YHPRC L L H+CFAD L++
Sbjct: 371 FRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMI 430
Query: 2305 CCRANKASIHAMFQRFNHFSEVFRLKAYMEKSSLYVAGIFDDLRDKLLQELHFSLGSLPI 2484
S+ + + N F+ LK MEK++LY+AG+ D R + F +G LP+
Sbjct: 431 LTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPV 490
Query: 2485 KYLGVPLSSRKLTVSQCLPLVERIIARIKCWNSKFLSYEGRLQLIKSVLLEMQTYWAQVF 2664
+YLG+PL +++LT S PL+++I RI W S++LS+ GRL LI SVL + +W F
Sbjct: 491 RYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAF 550
Query: 2665 LLPKKILSLITGVCKNFL*TCSNEFFRKALVAWDTMCQPKYIGG 2796
LP++ ++ I + L + +KA V+WD +C+PK GG
Sbjct: 551 RLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGG 594
Score = 108 bits (270), Expect(3) = 3e-80
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 4/205 (1%)
Frame = +2
Query: 1280 TAVGDYNSKIFHAHLKARQSRNRISSIYNEQGVKVTDPVLVQTEFLGFFQKLMGDTNP-- 1453
T VGD N+K FH + R++ N I I G+ VT +QTE + +FQ + T P
Sbjct: 87 TDVGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFL-QTIPAD 145
Query: 1454 -ELPCIDTII-AKDGPCXXXXXXXXXXVPVIKEKVHLSLKAIPNDKARGVDSYPVEFFKD 1627
E C++ + C V V E++ + ++P DK+ G D Y EF+K
Sbjct: 146 YEGMCVEELENLLPFRCSEDDHRLLTRV-VTGEEIKKVIFSMPKDKSPGPDGYTSEFYKA 204
Query: 1628 YWPLTGKDIIAIVLQFFQNGKLLQEINSTTVIFVPKVPNPTYVKDFRPIACFATLYKLIS 1807
W + G ++I + FF G L + +NST + +PK +KD+RPI+C LYK IS
Sbjct: 205 SWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAIS 264
Query: 1808 KVITARLETVIDTLVGQSQYTFIEE 1882
K++ RL+ ++ + +Q F+++
Sbjct: 265 KILANRLKRILPKFIVGNQSAFVKD 289
Score = 61.2 bits (147), Expect(3) = 3e-80
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
A EL+ + +++ RC +K++I KA+DS++W+FL VL P + WI C++
Sbjct: 299 ATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTAS 358
Query: 2088 YSLLINGGLTTKF 2126
+S+ +NG L F
Sbjct: 359 FSIQVNGELAGYF 371
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 167 bits (422), Expect(3) = 5e-80
Identities = 86/234 (36%), Positives = 134/234 (57%), Gaps = 1/234 (0%)
Frame = +2
Query: 1181 NAQLISDERETIQQLHKWDTIQ-KVLRQKSRVVWTAVGDYNSKIFHAHLKARQSRNRISS 1357
N LI E+ + L KW TI+ K+ QKSR W +GD N+K FHA+ K R+ +N I
Sbjct: 2 NPDLIEAEKICLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKF 61
Query: 1358 IYNEQGVKVTDPVLVQTEFLGFFQKLMGDTNPELPCIDTIIAKDGPCXXXXXXXXXXVPV 1537
+ E G ++ L++ E GF+ KLMG + LP +D + K GP
Sbjct: 62 LITEDGTRIDKHNLIKEEIRGFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKF 121
Query: 1538 IKEKVHLSLKAIPNDKARGVDSYPVEFFKDYWPLTGKDIIAIVLQFFQNGKLLQEINSTT 1717
+V L ++ + KA G+D Y V FFK W + G +I +L FF+ G + + IN T
Sbjct: 122 TAVEVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTY 181
Query: 1718 VIFVPKVPNPTYVKDFRPIACFATLYKLISKVITARLETVIDTLVGQSQYTFIE 1879
+ +PK N T VK+FRPIAC + +YK+ISK++T+R++ V++++V ++Q F++
Sbjct: 182 MTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVK 235
Score = 95.5 bits (236), Expect(3) = 5e-80
Identities = 42/80 (52%), Positives = 60/80 (75%)
Frame = +1
Query: 2125 FSAKRGIRQGDPMSPYVFVLAMEYLNRFLKQLKNVPEFKYHPRCAKLSLVHVCFADYLLM 2304
F+AK+G+RQGDP+SPY+FV+ MEYLN L QL+ F++HPRC +L+L+HVCF D LL+
Sbjct: 318 FAAKKGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRLNLIHVCFVDDLLL 377
Query: 2305 CCRANKASIHAMFQRFNHFS 2364
R + S+ +F+ F+ FS
Sbjct: 378 FSRGDVDSVSQLFEAFSLFS 397
Score = 87.4 bits (215), Expect(3) = 5e-80
Identities = 35/77 (45%), Positives = 55/77 (71%)
Frame = +3
Query: 1908 AHELINSSGQKNVTPRCIVKVNIRKAYDSVEWAFLKMVLLEFGIPHRMVQWIMTCVTIVK 2087
+HEL+ S +K ++PRC+VK++++KAY+SVEW F+K ++LE G ++ V W+M C+T
Sbjct: 246 SHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTAS 305
Query: 2088 YSLLINGGLTTKFFCQK 2138
Y+ ING LT F +K
Sbjct: 306 YTFNINGDLTRPFAAKK 322