BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00003781
         (895 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   287   3e-75
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   285   2e-74
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        188   2e-45
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              184   4e-44
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   184   4e-44
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     182   1e-43
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   179   1e-42
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   173   7e-41
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   173   7e-41
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   169   2e-39
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   156   1e-35
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   153   7e-35
ref|XP_006307125.1| hypothetical protein CARUB_v10008711mg [Caps...   153   7e-35
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   152   2e-34
ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Popu...   149   2e-33
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   145   2e-32
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   144   3e-32
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   143   1e-31
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   142   1e-31
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha...   140   5e-31

>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
           tuberosum]
          Length = 613

 Score =  287 bits (735), Expect = 3e-75
 Identities = 176/308 (57%), Positives = 182/308 (59%), Gaps = 11/308 (3%)
 Frame = -3

Query: 893 AAERSWKPPSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALAT 714
           AAERSWK PS ATT+V DIQKLKL S EANPDSVAPDRPWTYTGAVGPP EANT+P    
Sbjct: 77  AAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKP---- 132

Query: 713 ENFXXXXXXXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRPAPF 534
           EN                       LKGAQDAVMLVG  NL +SDNV   TLSE R APF
Sbjct: 133 ENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLNDSDNVGRGTLSEARTAPF 192

Query: 533 EIV-----------GVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNV 387
           E V           GV AEL  SEMKW                       EILQSQLSNV
Sbjct: 193 ESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLEPSPEELEILQSQLSNV 252

Query: 386 VAVKSNRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSG 207
           +AVKSNRQTE                            RASVQ+VDYSDPLRYLRGTT  
Sbjct: 253 IAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCS 312

Query: 206 YRLLTASEEHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYG 27
            RLLTASEE ELS GIQD             RCGGQPTF+QWAAAAGVDQ TLRKRLNYG
Sbjct: 313 SRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYG 372

Query: 26  ILCKDKMI 3
           ILCKDKMI
Sbjct: 373 ILCKDKMI 380


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
           lycopersicum]
          Length = 613

 Score =  285 bits (729), Expect = 2e-74
 Identities = 177/310 (57%), Positives = 185/310 (59%), Gaps = 13/310 (4%)
 Frame = -3

Query: 893 AAERSWKPPSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRP--AL 720
           AAERSWK PS ATT+V  IQKLKL S EANPDSVAPDRPWTYTGAVGPP EANT+P  +L
Sbjct: 77  AAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSL 136

Query: 719 ATENFXXXXXXXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRPA 540
           A+E                        LKGAQDAVMLVG  NLK+SDNV   TLSE R A
Sbjct: 137 ASEE------AIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTA 190

Query: 539 PFEIV-----------GVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLS 393
           PFE V           GV AEL  SEMKW                       EILQSQLS
Sbjct: 191 PFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLS 250

Query: 392 NVVAVKSNRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTT 213
           NV+AVKSNRQTE                            RASVQ+VDYSDPLRYLRGTT
Sbjct: 251 NVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTT 310

Query: 212 SGYRLLTASEEHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLN 33
              RLLTASEE ELS GIQD             RCGGQPTF+QWAAAAGVDQ TLRKRLN
Sbjct: 311 CSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLN 370

Query: 32  YGILCKDKMI 3
           YGILCKDKMI
Sbjct: 371 YGILCKDKMI 380


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  188 bits (478), Expect = 2e-45
 Identities = 122/296 (41%), Positives = 155/296 (52%), Gaps = 8/296 (2%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           ST  T+VLD++KL+L S EA+P+SVA DRPWTY GA GPP+EA+    LAT+N       
Sbjct: 85  STTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATGPPSEASLGATLATDNLLTSDEA 144

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGNIN-----LKNSDNVSIDTLSEVRPAPF---E 531
                           +K A+DA ++  N N     +K+  + + D+ +  + A F   E
Sbjct: 145 VIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTEMKSGVSFATDSFTS-KWALFTEAE 203

Query: 530 IVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEXX 351
             G+  +    E +  +                     E L+ QLS  +AV+S RQTE  
Sbjct: 204 RAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEELEHLEEQLSRSIAVRSRRQTERK 263

Query: 350 XXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHEL 171
                                     R ++Q+VDYSDPLRYLRGTTS  RLLTA+EE EL
Sbjct: 264 AKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSDPLRYLRGTTSTSRLLTANEELEL 323

Query: 170 SGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           S GIQD             RCGGQPTF+QWAAAAGVDQKTLR RLNYG+ CKDKMI
Sbjct: 324 SEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQKTLRSRLNYGVHCKDKMI 379


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  184 bits (467), Expect = 4e-44
 Identities = 124/298 (41%), Positives = 151/298 (50%), Gaps = 8/298 (2%)
 Frame = -3

Query: 872 PPSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXX 693
           P ST+TT+VLDI+KL+L SLE++ +SVA  RPWTY G VGPPTEAN    LA E      
Sbjct: 45  PLSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSE 104

Query: 692 XXXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDN-----VSIDTLSEVRPAPF-- 534
                             +K A+DA  LVG  N   S+      +S D  S+ R   F  
Sbjct: 105 EAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTE 164

Query: 533 -EIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTE 357
            E +G+  +   +E                          E+L+++ S  + V+SNRQ E
Sbjct: 165 TERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVE 224

Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEH 177
                                       R S+QEVDYSDPLRYLRGTTS  RLLTA+EE 
Sbjct: 225 RKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEEL 284

Query: 176 ELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           ELS GIQD             R G +PTF+QWAAAAGVDQKTLR+R NYGI CKDKMI
Sbjct: 285 ELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMI 342


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  184 bits (467), Expect = 4e-44
 Identities = 124/298 (41%), Positives = 151/298 (50%), Gaps = 8/298 (2%)
 Frame = -3

Query: 872 PPSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXX 693
           P ST+TT+VLDI+KL+L SLE++ +SVA  RPWTY G VGPPTEAN    LA E      
Sbjct: 48  PLSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSE 107

Query: 692 XXXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDN-----VSIDTLSEVRPAPF-- 534
                             +K A+DA  LVG  N   S+      +S D  S+ R   F  
Sbjct: 108 EAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTE 167

Query: 533 -EIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTE 357
            E +G+  +   +E                          E+L+++ S  + V+SNRQ E
Sbjct: 168 TERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVE 227

Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEH 177
                                       R S+QEVDYSDPLRYLRGTTS  RLLTA+EE 
Sbjct: 228 RKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEEL 287

Query: 176 ELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           ELS GIQD             R G +PTF+QWAAAAGVDQKTLR+R NYGI CKDKMI
Sbjct: 288 ELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMI 345


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  182 bits (462), Expect = 1e-43
 Identities = 118/288 (40%), Positives = 144/288 (50%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           S   T VL ++KL+  SL+AN +SV  +RPWTYTGA GPP EAN    LATE        
Sbjct: 55  SVGATYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEA 114

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRPAPFEIVGVGAEL 507
                           +K A+DA +LV       S ++       ++ A  +      + 
Sbjct: 115 VIAAAAAEAVTLAKAAVKVAKDAALLVRPSTRAESISLVSSEARNIKTA--QAASRVRDS 172

Query: 506 KRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEXXXXXXXXXX 327
            R+EM   +                      ILQ QLS  +AV+S RQ+E          
Sbjct: 173 LRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAE 232

Query: 326 XXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELSGGIQDXX 147
                             RASVQ+VD+SDPLRYLR TTS  RLLTA+EE ELS GIQD  
Sbjct: 233 KAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLL 292

Query: 146 XXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
                      RCGG PTF+QWAAAAGVDQKTLR+R+NYGILCKDKMI
Sbjct: 293 KLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMI 340


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
           subsp. vesca]
          Length = 616

 Score =  179 bits (454), Expect = 1e-42
 Identities = 122/298 (40%), Positives = 151/298 (50%), Gaps = 10/298 (3%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           ST T ++LD+++  L SL  N DS+  +RPWTYTGA+GPPTEAN   ALATE        
Sbjct: 89  STPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEA 148

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGN---INLKNSDNVSIDTLS-------EVRPAP 537
                           LK A+D  +LV N     ++NS  VS  T +        +   P
Sbjct: 149 VIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLETEP 208

Query: 536 FEIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTE 357
              +G   +   SE    +                     E+LQ QLSN +A +S+RQTE
Sbjct: 209 TLRIG---DSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTE 265

Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEH 177
                                       RAS+Q+VD+SDPLRYLR TT   RLLTA+EE 
Sbjct: 266 RKARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEI 325

Query: 176 ELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           ELS GIQ+             RCG QPTF+QWAAAAGVDQKTLRKR+NYGI+CKDKMI
Sbjct: 326 ELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMI 383


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
           sinensis]
          Length = 605

 Score =  173 bits (439), Expect = 7e-41
 Identities = 124/304 (40%), Positives = 154/304 (50%), Gaps = 16/304 (5%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           STA T+VLD++KL+L SLEA+ ++VA +R WTY GAVGP TE N   +LATE        
Sbjct: 78  STAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGNINL-----KNSDNVSIDT-------LSEVRP 543
                            K A+DA ++V + N      K + ++S DT       L+E   
Sbjct: 138 IAAASAEAVALARAAV-KVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERER 196

Query: 542 APF----EIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVK 375
           A       IV    E + SE +                        ++L+ Q+S  +AV+
Sbjct: 197 ASIIGDSVIVEAAPEEEYSEQQ---------PLNKSADLEPTHEELKLLEEQVSQSIAVR 247

Query: 374 SNRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLL 195
           S RQTE                            R SVQEVDYSDPLRYLR TTS  RLL
Sbjct: 248 SRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLL 307

Query: 194 TASEEHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCK 15
           TA+EE +LS GIQD             RCGG PTF+QWAAAAGVDQ+ LR+RLNYGILCK
Sbjct: 308 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCK 367

Query: 14  DKMI 3
           DKMI
Sbjct: 368 DKMI 371


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
           gi|557539534|gb|ESR50578.1| hypothetical protein
           CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  173 bits (439), Expect = 7e-41
 Identities = 122/304 (40%), Positives = 153/304 (50%), Gaps = 16/304 (5%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           STA T+VLD++KL+L SLEA+ ++VA +R WTY GAVGP TE N   +LATE        
Sbjct: 78  STAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGNINL-----KNSDNVSIDTLSEVRPAPFE--- 531
                            K A+DA ++V + N      K + ++S DT + +     E   
Sbjct: 138 IAAASAEAVALARAAV-KVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTERER 196

Query: 530 --------IVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVK 375
                   IV    E + SE +                        ++L+ Q+S  +AV+
Sbjct: 197 ASIIGDSVIVEAAPEEEYSEQQ---------PLNKSADLEPTHEELKLLEEQVSQSIAVR 247

Query: 374 SNRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLL 195
           S RQTE                            R SVQEVDYSDPLRYLR TTS  RLL
Sbjct: 248 SRRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLL 307

Query: 194 TASEEHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCK 15
           TA+EE +LS GIQD             RCGG PTF+QWAAAAGVDQ+ LR+RLNYGILCK
Sbjct: 308 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCK 367

Query: 14  DKMI 3
           DKMI
Sbjct: 368 DKMI 371


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
           sinensis]
          Length = 525

 Score =  169 bits (427), Expect = 2e-39
 Identities = 121/300 (40%), Positives = 151/300 (50%), Gaps = 16/300 (5%)
 Frame = -3

Query: 854 TSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXXXXXX 675
           T+VLD++KL+L SLEA+ ++VA +R WTY GAVGP TE N   +LATE            
Sbjct: 2   TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61

Query: 674 XXXXXXXXXXXXLKGAQDAVMLVGNINL-----KNSDNVSIDT-------LSEVRPAPF- 534
                        K A+DA ++V + N      K + ++S DT       L+E   A   
Sbjct: 62  SAEAVALARAAV-KVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASII 120

Query: 533 ---EIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQ 363
               IV    E + SE +                        ++L+ Q+S  +AV+S RQ
Sbjct: 121 GDSVIVEAAPEEEYSEQQ---------PLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQ 171

Query: 362 TEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASE 183
           TE                            R SVQEVDYSDPLRYLR TTS  RLLTA+E
Sbjct: 172 TERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANE 231

Query: 182 EHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           E +LS GIQD             RCGG PTF+QWAAAAGVDQ+ LR+RLNYGILCKDKMI
Sbjct: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
           gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
           rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  156 bits (394), Expect = 1e-35
 Identities = 115/294 (39%), Positives = 142/294 (48%), Gaps = 5/294 (1%)
 Frame = -3

Query: 869 PSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXX 690
           PST+T +VLD++KL+L S EA  DS+AP+ PWTY         A     LATE       
Sbjct: 53  PSTST-AVLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDE 102

Query: 689 XXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDN--VSIDTLSEVRPAPF---EIV 525
                            +K A+DA +LV N     +++   S  T+   R   F   E  
Sbjct: 103 AVIAAAAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWPQFTETERA 162

Query: 524 GVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEXXXX 345
            +  +   +E    +                     E+LQ QLS  +AV+S RQTE    
Sbjct: 163 RIIGDSVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKAR 222

Query: 344 XXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELSG 165
                                   R S+QEVDYSDPLRYLRGTTS  RLLTASEE ELS 
Sbjct: 223 RARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSA 282

Query: 164 GIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
            IQD             R GGQPTF+QWAAAAGVDQ+TLRKR+N+G +CKDKMI
Sbjct: 283 AIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMI 336


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
           gi|482575837|gb|EOA40024.1| hypothetical protein
           CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  153 bits (387), Expect = 7e-35
 Identities = 108/291 (37%), Positives = 138/291 (47%), Gaps = 7/291 (2%)
 Frame = -3

Query: 854 TSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXXXXXX 675
           TS LD+ KL+L S + + DS   DR WTYTG VGP TEA    ALA+E            
Sbjct: 50  TSTLDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAA 109

Query: 674 XXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRP-----APFEIVGVGAE 510
                       +K A+DA +   +    N+ N+ I + ++ R         E  G+   
Sbjct: 110 AAAEAVALARAAVKVAKDATLFKNS----NNTNLLISSTADKRSKWDQFTEKERAGILGH 165

Query: 509 LKRSE--MKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEXXXXXXX 336
           L  S+  +  +K                     E+++ Q +  +AV+S RQTE       
Sbjct: 166 LAVSDTGIVSDKSTAPASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAK 225

Query: 335 XXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELSGGIQ 156
                                R   QEVD++DPLRYLR TTS  +LLT  EEHELS GIQ
Sbjct: 226 GLEKSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQ 285

Query: 155 DXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           D             RCG QPTFSQWA+AAGVDQK+LRKR+NYG  CKDKMI
Sbjct: 286 DLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMI 336


>ref|XP_006307125.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
           gi|482575836|gb|EOA40023.1| hypothetical protein
           CARUB_v10008711mg [Capsella rubella]
          Length = 487

 Score =  153 bits (387), Expect = 7e-35
 Identities = 108/291 (37%), Positives = 138/291 (47%), Gaps = 7/291 (2%)
 Frame = -3

Query: 854 TSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXXXXXX 675
           TS LD+ KL+L S + + DS   DR WTYTG VGP TEA    ALA+E            
Sbjct: 50  TSTLDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAA 109

Query: 674 XXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRP-----APFEIVGVGAE 510
                       +K A+DA +   +    N+ N+ I + ++ R         E  G+   
Sbjct: 110 AAAEAVALARAAVKVAKDATLFKNS----NNTNLLISSTADKRSKWDQFTEKERAGILGH 165

Query: 509 LKRSE--MKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEXXXXXXX 336
           L  S+  +  +K                     E+++ Q +  +AV+S RQTE       
Sbjct: 166 LAVSDTGIVSDKSTAPASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAK 225

Query: 335 XXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELSGGIQ 156
                                R   QEVD++DPLRYLR TTS  +LLT  EEHELS GIQ
Sbjct: 226 GLEKSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQ 285

Query: 155 DXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           D             RCG QPTFSQWA+AAGVDQK+LRKR+NYG  CKDKMI
Sbjct: 286 DLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMI 336


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
           gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family
           protein [Populus trichocarpa]
          Length = 567

 Score =  152 bits (383), Expect = 2e-34
 Identities = 101/295 (34%), Positives = 144/295 (48%), Gaps = 7/295 (2%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           ++ +T+VLD++KL+L SLE + DS++ +RPWTY G +GP  +     +LA E        
Sbjct: 40  ASPSTAVLDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEA 99

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGNIN-LKNSDNVSIDTLSEVRPAPFEIV----- 525
                           +K A+DA  +  N + +K    + I + ++   + + ++     
Sbjct: 100 VIAAAAAEAVALARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKER 159

Query: 524 -GVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEXXX 348
             +  +   +E +  +                      +LQ QLS  +AV+S RQTE   
Sbjct: 160 ADIIGDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKA 219

Query: 347 XXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELS 168
                                    R  +QEVD SDPLR+ RG +S  RLL+A+EE ELS
Sbjct: 220 RRARAAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELS 279

Query: 167 GGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
            GIQD             R GG+P+F+QWAAAAGVDQ TLRKRLNYGILCKDKMI
Sbjct: 280 EGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMI 334


>ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Populus trichocarpa]
           gi|550316911|gb|EEE99836.2| hypothetical protein
           POPTR_0019s06100g [Populus trichocarpa]
          Length = 555

 Score =  149 bits (375), Expect = 2e-33
 Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 10/299 (3%)
 Frame = -3

Query: 869 PSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXX 690
           PST+T +VL+++KL+L SLE++ DS+A +RPWTY G +GPP E     +LATE       
Sbjct: 28  PSTST-AVLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDE 86

Query: 689 XXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNV-----SIDTLSEV-----RPA 540
                            +K A+DA  +  N    N++       + D+ S +        
Sbjct: 87  AVIAAAAAEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWCLLTGKE 146

Query: 539 PFEIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQT 360
             +I+GV      +E    +                      +L+ QLS  + V+S RQT
Sbjct: 147 RADIIGVSFS---AETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQT 203

Query: 359 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEE 180
           +                            R  VQEVD SDPLR+ RG ++  RLL+A+EE
Sbjct: 204 QRKAKRARAAEKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEE 263

Query: 179 HELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
            ELS GIQD             R GG+PTF+QWAAAA VDQ TLRKRLNY ILCKDKMI
Sbjct: 264 VELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMI 322


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
           gi|557095448|gb|ESQ36030.1| hypothetical protein
           EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  145 bits (366), Expect = 2e-32
 Identities = 112/306 (36%), Positives = 137/306 (44%), Gaps = 13/306 (4%)
 Frame = -3

Query: 881 SWKPPSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFX 702
           S  PP    TS+LD+ KL+L S + + DS   DR WTYTG VGP TEA    ALA+E   
Sbjct: 43  STSPP--LLTSMLDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLL 100

Query: 701 XXXXXXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRP-APFEIV 525
                                +K A+DA     + N K   + + D  S+       E  
Sbjct: 101 TSDEAVVAAAAAEAVALARAAVKVAKDATSFRNSYNTKVVVSSAADKRSKWDQFTEKERA 160

Query: 524 GVGAELKRSEMKWNK------------IXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVA 381
           G+   L  S+                                      E+L+ QLS   A
Sbjct: 161 GILGHLAVSDTGVVSDKSTAPAPAPAPAPAPDCNNESSGDLKSEKQEVELLEEQLSVSSA 220

Query: 380 VKSNRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYR 201
           V+S RQTE                            RA  QEVD++DPLRYLR TTS  +
Sbjct: 221 VRSTRQTERKARRAKGLEKTASSMQSVKTGSSSRKKRAPSQEVDHNDPLRYLRMTTSSSK 280

Query: 200 LLTASEEHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGIL 21
           LLTA EE ELS GIQD             RCG QPTF+QWA+AAGVDQK+LRKR+NYG  
Sbjct: 281 LLTAREEQELSEGIQDLLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRINYGTQ 340

Query: 20  CKDKMI 3
           CKD+MI
Sbjct: 341 CKDRMI 346


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
           lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
           ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  144 bits (364), Expect = 3e-32
 Identities = 106/292 (36%), Positives = 138/292 (47%), Gaps = 8/292 (2%)
 Frame = -3

Query: 854 TSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXXXXXX 675
           TS+LD+ KL+L S + + DS   DR WTYT   GP TEA    ALA+E            
Sbjct: 50  TSMLDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVA 109

Query: 674 XXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRP-----APFEIVGVGAE 510
                       +K A+DA +   +    N+ N+ I + ++ R         E  G+   
Sbjct: 110 AAAEAVALARAAVKVAKDATLFKNS----NNTNLLISSTADKRSKWDQFTEKERAGILGH 165

Query: 509 LKRSE--MKWNKIXXXXXXXXXXXXXXXXXXXXE-ILQSQLSNVVAVKSNRQTEXXXXXX 339
           L  S+  +  +KI                      +L+ Q S  +AV+S RQTE      
Sbjct: 166 LAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRA 225

Query: 338 XXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELSGGI 159
                                 R   QEVD++DPLRYLR TTS  +LLT  EEHELS GI
Sbjct: 226 KGLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGI 285

Query: 158 QDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           QD             RCG QPTF+QWA+AAGVDQK+LRKR+++G LCKDKMI
Sbjct: 286 QDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMI 337


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
           gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
           polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  143 bits (360), Expect = 1e-31
 Identities = 109/305 (35%), Positives = 139/305 (45%), Gaps = 15/305 (4%)
 Frame = -3

Query: 872 PPSTATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXX 693
           P ST T + LD+ +LKL   + N DSV+ +R  +Y GAV    E++    L T       
Sbjct: 60  PTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAV----ESSLASTLLTSE----- 110

Query: 692 XXXXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRPAP-------- 537
                             +K A+DA +L  NIN   +      T S+  P P        
Sbjct: 111 EASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAG-----TKSQSSPKPDALHFKWA 165

Query: 536 -------FEIVGVGAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAV 378
                   +I+G    + +  M+ + +                     +LQ +LS  + V
Sbjct: 166 QFMESERADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELE---LLQDELSESITV 222

Query: 377 KSNRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRL 198
           KS RQTE                            R SVQEVDYSDPLRYLR TT+  RL
Sbjct: 223 KSKRQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRL 282

Query: 197 LTASEEHELSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILC 18
           LTA+EE ELS GIQD             R G +PTF+QWAAAAGV+Q+TLRKRLNYG LC
Sbjct: 283 LTATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLC 342

Query: 17  KDKMI 3
           KDKMI
Sbjct: 343 KDKMI 347


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
           gi|548831956|gb|ERM94758.1| hypothetical protein
           AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  142 bits (359), Expect = 1e-31
 Identities = 104/297 (35%), Positives = 135/297 (45%), Gaps = 9/297 (3%)
 Frame = -3

Query: 866 STATTSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXX 687
           S+  T V+D+ K+++ SL  +  SV+   P TY G +G   + +   AL TE+       
Sbjct: 40  SSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKKTDFEAALVTESLLKSEEA 99

Query: 686 XXXXXXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVS-------IDTLSEVRPAPFEI 528
                            K A+DA ++VG++    SD V        I  L   R    E 
Sbjct: 100 IIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDKVDDFPSEADILRLQRARLTEMER 159

Query: 527 VGV--GAELKRSEMKWNKIXXXXXXXXXXXXXXXXXXXXEILQSQLSNVVAVKSNRQTEX 354
           +G   G+ +     +                        E LQ Q S  VAV+S RQTE 
Sbjct: 160 IGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEALQLQHSQRVAVRSRRQTER 219

Query: 353 XXXXXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHE 174
                                      RA +QE+DYSDPLRYLRGTT+  +LLTA+EE E
Sbjct: 220 RARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEELE 279

Query: 173 LSGGIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           LS GIQD             R GG+PTF QWAAAAG+DQK LR+RL+YG  CKDKMI
Sbjct: 280 LSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMI 336


>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
           gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
           polymerase sigma factor sigB; Short=Sigma factor B;
           Short=Sigma-B; AltName: Full=Protein ABERRANT
           CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
           sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
           Full=RNA polymerase sigma factor sig2; Short=Atsig2;
           Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
           factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
           Precursor gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
           [Arabidopsis thaliana]
           gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2
           [Arabidopsis thaliana] gi|2443357|dbj|BAA22427.1| SigB
           [Arabidopsis thaliana] gi|2597831|emb|CAA75584.1| sigma
           factor [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1|
           plastid RNA polymerase sigma-subunit [Arabidopsis
           thaliana] gi|5478446|dbj|BAA82449.1| sigma factor SigB
           [Arabidopsis thaliana] gi|133778838|gb|ABO38759.1|
           At1g08540 [Arabidopsis thaliana]
           gi|332190182|gb|AEE28303.1| RNA polymerase sigma subunit
           2 [Arabidopsis thaliana]
          Length = 572

 Score =  140 bits (354), Expect = 5e-31
 Identities = 106/294 (36%), Positives = 137/294 (46%), Gaps = 10/294 (3%)
 Frame = -3

Query: 854 TSVLDIQKLKLLSLEANPDSVAPDRPWTYTGAVGPPTEANTRPALATENFXXXXXXXXXX 675
           TS+LD+ KL+L S + + DS+  DR WTYT   GP TEA    ALA+E            
Sbjct: 50  TSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVA 109

Query: 674 XXXXXXXXXXXXLKGAQDAVMLVGNINLKNSDNVSIDTLSEVRP-------APFEIVGVG 516
                       +K A+DA +       KNS+N ++ T S              E  G+ 
Sbjct: 110 AAAEAVALARAAVKVAKDATLF------KNSNNTNLLTSSTADKRSKWDQFTEKERAGIL 163

Query: 515 AELKRSE--MKWNKIXXXXXXXXXXXXXXXXXXXXE-ILQSQLSNVVAVKSNRQTEXXXX 345
             L  S+  +  +KI                      +L+ Q S  +AV+S RQTE    
Sbjct: 164 GHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR 223

Query: 344 XXXXXXXXXXXXXXXXXXXXXXXXRASVQEVDYSDPLRYLRGTTSGYRLLTASEEHELSG 165
                                   R   QEVD++DPLRYLR TTS  +LLT  EEHELS 
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSA 283

Query: 164 GIQDXXXXXXXXXXXXXRCGGQPTFSQWAAAAGVDQKTLRKRLNYGILCKDKMI 3
           GIQD             R G QPTF+QWA+AAGVDQK+LR+R+++G LCKDKMI
Sbjct: 284 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 337