BLASTX nr result
ID: Atropa21_contig00003651
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00003651
(784 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 505 e-141
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 503 e-140
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 503 e-140
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 502 e-140
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 501 e-139
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 499 e-139
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 499 e-139
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 499 e-139
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 449 e-124
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 447 e-123
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 441 e-121
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 439 e-121
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 434 e-119
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 434 e-119
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 433 e-119
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 433 e-119
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 430 e-118
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 430 e-118
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 430 e-118
ref|XP_004292989.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 428 e-117
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 505 bits (1301), Expect = e-141
Identities = 242/260 (93%), Positives = 251/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPP AYQIRYAG KGV+ CWP KNDGIRLSLRPSMKKFDSNHT LEICSWTR QPGFL
Sbjct: 608 SVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQI+TLLSSLD+KD IFWEMQ+EM+S LDKMLVDSDVAFDVITASCAEAGNTAAIMLSA
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGMLSSIRA+QLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLENCF+KHGPKFSDIKKNLQV+KGLVVIAKNPCLHPGDVRILEAVDVP LHHLYDCLV
Sbjct: 788 PSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 503 bits (1295), Expect = e-140
Identities = 242/260 (93%), Positives = 251/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPP AYQIRYAG KGV+ CWP KNDGIRLSLRPSMKKFDSNHT LEICSWTR QPGFL
Sbjct: 608 SVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQI+TLLSSLD+KD IFWEMQ+EM+S LDKMLVDSDVAFDVITASCAEAGNTAA+MLSA
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGMLSSIRA+QLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLENCFVKHGPKFSDIKKNLQV+KGLVVIAKNPCLHPGDVRILEAVDVPSL HLYDCLV
Sbjct: 788 PSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 503 bits (1294), Expect = e-140
Identities = 241/260 (92%), Positives = 251/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
+VNPP AYQIRYAGYKGV+ CWP KNDGI LSLRPSMKKFDSNHT LEICSWTR QPGFL
Sbjct: 608 NVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQI+TLLSSLD+KD IFWEMQ+EM+S LDKMLVDSDVAFDVITASCAEAGNTAA+MLSA
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGMLSSIRA+QLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLENCFVKHGPKFSDIKKNLQV+KGLVVIAKNPCLHPGDVRILEAVDVPSL HLYDCLV
Sbjct: 788 PSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 502 bits (1293), Expect = e-140
Identities = 242/260 (93%), Positives = 251/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPP AYQIRYAG KGV+ CWP KNDGIRLSLRPSMKKFDSNHT LEICSWTR QPGFL
Sbjct: 608 SVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQI+TLLSSLD+KD IFWEMQ+EM+S LDKMLVDSDVAFDVITASCAEAGNTAAIMLSA
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGMLSSIRA+QLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLENCFVKHGPKFSDIK+NLQV+KGLVVIAKNPCLHPGDVRILEAVDVPSL HLYDCLV
Sbjct: 788 PSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 501 bits (1289), Expect = e-139
Identities = 240/260 (92%), Positives = 250/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPP AYQIRYAG KGV+ CWP KNDGI LSLRPSMKKFDSNHT LEICSWTR QPGFL
Sbjct: 608 SVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQI+TLLSSLD+KD IFWEMQ+EM+S L+KMLVDSDVAFDVITASCAEAGNTAAIMLSA
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGMLSSIRA+QLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLENCF+KHGPKFSDIKKNLQV+KGLVVIAKNPCLHPGDVRILEAVDVP LHHLYDCLV
Sbjct: 788 PSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 499 bits (1285), Expect = e-139
Identities = 239/260 (91%), Positives = 252/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPPCAYQIRYAG KGV+ CWPA+ DGIRLSLRPSMKKFDSNHT LEICSWTRLQPGFL
Sbjct: 609 SVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFL 668
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQIITLLSSL++KDE+FWEMQ+EMLS+LDK+LVDSDVAFDVITASCAEAGNTAAIMLSA
Sbjct: 669 NRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSA 728
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGML+SIRAAQLGDLRNK R+FVPSGRWLMGCLDEL +LEQGQCFIQVS+
Sbjct: 729 GFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQGQCFIQVSS 788
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLE CFVKHGPKFS+IKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVP LHHLYDCLV
Sbjct: 789 PSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLV 848
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 849 FPQKGDRPHSNEASGSDLDG 868
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 499 bits (1285), Expect = e-139
Identities = 240/260 (92%), Positives = 250/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPP AYQIRYAG KGV+ CWP KNDGIRLSLRPSMKKFDSNHT LEICSWTR QPGFL
Sbjct: 608 SVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQI+TLLSSLD+KD IFWEMQ+EM++ LDKMLVDSDVAFDVITASCAEAGNTAA+MLSA
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGMLSSIRA+QLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLENCFVKHG KFSDIKKNLQV+KGLVVIAKNPCLHPGDVRILEAVDVPSL HLYDCLV
Sbjct: 788 PSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
6 [Solanum lycopersicum]
Length = 1197
Score = 499 bits (1284), Expect = e-139
Identities = 238/260 (91%), Positives = 252/260 (96%)
Frame = +3
Query: 3 SVNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFL 182
SVNPPCAYQIRYAG KGV+ CWPA+ DGIRLSLRPSMKKFDSNHT LEICSWTRLQPGFL
Sbjct: 608 SVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFL 667
Query: 183 NRQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSA 362
NRQIITLLSSL++KDE+FWEMQ+EMLS+LDK+LVDSDVAFDVITASCAEAGNTAAIMLSA
Sbjct: 668 NRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSA 727
Query: 363 GFKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSN 542
GFKPQSEPHLRGML+SIRAAQLGDLRNK R+FV SGRWLMGCLDELGELEQGQCFIQVS+
Sbjct: 728 GFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSS 787
Query: 543 PSLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLV 722
PSLE CFVKHGP+FS+IKKNLQV+KGLVVIAKNPCLHPGDVRILEAVDVP LHHLYDCLV
Sbjct: 788 PSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLV 847
Query: 723 FPQKGDRPHSNEASGSDLDG 782
FPQKGDRPHSNEASGSDLDG
Sbjct: 848 FPQKGDRPHSNEASGSDLDG 867
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 449 bits (1155), Expect = e-124
Identities = 209/259 (80%), Positives = 233/259 (89%)
Frame = +3
Query: 6 VNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLN 185
++PPCAYQIRYAG KGV+ CWP K DG+RLSLRPSM KF SNHTTLEICSWTR QPGFLN
Sbjct: 612 IDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLN 671
Query: 186 RQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAG 365
RQIITLLS+L++ D +FW+MQE M+S+L++M V+SDVAFDV+TASCA+ GN AAIMLSAG
Sbjct: 672 RQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAG 731
Query: 366 FKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNP 545
FKP EPHLRGML+ +RAAQL DLR K RIFVPSGRWLMGCLDELG LEQGQCFIQVSN
Sbjct: 732 FKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNS 791
Query: 546 SLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVF 725
SLE CF+KHG KFS+ +KNLQVIKG VVIAKNPCLHPGDVR+LEAVDVP LHHLYDCLVF
Sbjct: 792 SLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVF 851
Query: 726 PQKGDRPHSNEASGSDLDG 782
PQKG+RPH+NEASGSDLDG
Sbjct: 852 PQKGERPHTNEASGSDLDG 870
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 447 bits (1149), Expect = e-123
Identities = 211/258 (81%), Positives = 231/258 (89%)
Frame = +3
Query: 9 NPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNR 188
+PPCAYQIRYAG KGV+ CWP + DGIRLSLR SM KF SNHT LEICSWTR QPGFLNR
Sbjct: 610 DPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNR 669
Query: 189 QIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGF 368
QIITLLS+L++ D +FW+MQE M+S+L++MLVDSDVAFDV+TASCAE GN AAIMLSAGF
Sbjct: 670 QIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGF 729
Query: 369 KPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPS 548
KPQ EPHLRGML+ +RAAQL LR KARIFVPSGRWLMGCLDELG LEQGQCFIQVSN
Sbjct: 730 KPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSY 789
Query: 549 LENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFP 728
LENCFVKHG KFS+ KKNLQV+KG VVIAKNPCLHPGD+RILEAVD P LHHLYDCLVFP
Sbjct: 790 LENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFP 849
Query: 729 QKGDRPHSNEASGSDLDG 782
QKG+RPH+NEASGSDLDG
Sbjct: 850 QKGERPHANEASGSDLDG 867
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 441 bits (1133), Expect = e-121
Identities = 208/259 (80%), Positives = 229/259 (88%)
Frame = +3
Query: 6 VNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLN 185
+NPP AYQIRYAG KGV+ CWP K DGIRLSLR SM KFDS HT LEICSWTR QPGFLN
Sbjct: 605 INPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGFLN 664
Query: 186 RQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAG 365
RQI+TLLS+L+++DEIFW+MQE ML +L++ML D+DVAF+V+TASC E GN AIMLSAG
Sbjct: 665 RQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLSAG 724
Query: 366 FKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNP 545
FKPQSEPHL+GML+ IRAAQL LR KARIFVP GRWLMGCLDELG LEQGQCFIQVS P
Sbjct: 725 FKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTP 784
Query: 546 SLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVF 725
SLENCF KHG +FS+ K NL+VIKG VVIAKNPCLHPGD+RILEAVDVP LHHLYDCLVF
Sbjct: 785 SLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCLVF 844
Query: 726 PQKGDRPHSNEASGSDLDG 782
PQKGDRPH+NEASGSDLDG
Sbjct: 845 PQKGDRPHANEASGSDLDG 863
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 439 bits (1129), Expect = e-121
Identities = 208/259 (80%), Positives = 230/259 (88%)
Frame = +3
Query: 6 VNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLN 185
VNPPCAYQIRYAG KGV+ CWPA DGIRLSLR SM KF SNHTTLEICSWTR QPGFLN
Sbjct: 609 VNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLN 668
Query: 186 RQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAG 365
RQIITLLS+LD+ DEIFW+MQ M+S+L++M +D+DVAFDV+TASCAE GNTAAIMLSAG
Sbjct: 669 RQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAG 728
Query: 366 FKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNP 545
F P++EPHL GML+ IRAAQL LR K RIFVPSGRWLMGCLDELG LE GQCFIQVSNP
Sbjct: 729 FNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNP 788
Query: 546 SLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVF 725
SLE+CF KHG +FS+ KK LQV+KG VV+AKNPCLHPGD+RILEAVD P LHHL+DCLVF
Sbjct: 789 SLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVF 848
Query: 726 PQKGDRPHSNEASGSDLDG 782
PQKGDRPH+NEASGSDLDG
Sbjct: 849 PQKGDRPHTNEASGSDLDG 867
>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
sinensis]
Length = 1025
Score = 434 bits (1115), Expect = e-119
Identities = 207/257 (80%), Positives = 229/257 (89%)
Frame = +3
Query: 12 PPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNRQ 191
PPCAYQIRYAG KGV+ CWPAK DGIR+SLR SM KF S+HTTLEICSWTR QPGFLNRQ
Sbjct: 612 PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
Query: 192 IITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFK 371
IITLLS+L++ DE+FW MQ+ MLS+L++MLVDSDVAF+V+TA+CAE GNTAAIMLSAGF
Sbjct: 672 IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFN 731
Query: 372 PQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPSL 551
PQ+EPHLRGML+ IRAAQL LR KARIFVP+GRWLMGCLDELG LE GQCFIQVS P L
Sbjct: 732 PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
Query: 552 ENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFPQ 731
NCF KHG +F++ KK LQVIKG VVIAKNPCLHPGD+RILEAVD P LHHLYDCLVFPQ
Sbjct: 792 GNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
Query: 732 KGDRPHSNEASGSDLDG 782
KGDRPH+NEASGSDLDG
Sbjct: 851 KGDRPHTNEASGSDLDG 867
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 434 bits (1115), Expect = e-119
Identities = 207/257 (80%), Positives = 229/257 (89%)
Frame = +3
Query: 12 PPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNRQ 191
PPCAYQIRYAG KGV+ CWPAK DGIR+SLR SM KF S+HTTLEICSWTR QPGFLNRQ
Sbjct: 612 PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
Query: 192 IITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFK 371
IITLLS+L++ DE+FW MQ+ MLS+L++MLVDSDVAF+V+TA+CAE GNTAAIMLSAGF
Sbjct: 672 IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFN 731
Query: 372 PQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPSL 551
PQ+EPHLRGML+ IRAAQL LR KARIFVP+GRWLMGCLDELG LE GQCFIQVS P L
Sbjct: 732 PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
Query: 552 ENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFPQ 731
NCF KHG +F++ KK LQVIKG VVIAKNPCLHPGD+RILEAVD P LHHLYDCLVFPQ
Sbjct: 792 GNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
Query: 732 KGDRPHSNEASGSDLDG 782
KGDRPH+NEASGSDLDG
Sbjct: 851 KGDRPHTNEASGSDLDG 867
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 433 bits (1114), Expect = e-119
Identities = 201/259 (77%), Positives = 233/259 (89%)
Frame = +3
Query: 6 VNPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLN 185
+NPPCAYQIRYAG KGV+ CWP + DG+RLSLR SM KF S+HTTLEICSWTR QPGFLN
Sbjct: 609 LNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLN 668
Query: 186 RQIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAG 365
RQIITLLS+ + DE+FWEMQ M+S+L+K+LVD+DVAF+V+T+SC+E GN AAIMLSAG
Sbjct: 669 RQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAG 728
Query: 366 FKPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNP 545
FKPQ+EPHLRG+L+ +RA+QL LR KARIFVPSGRWLMG LDELG LEQGQCFIQVSNP
Sbjct: 729 FKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNP 788
Query: 546 SLENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVF 725
S+ENCF+KHG +F++ KKN +VI+GLVVIAKNPCLHPGD+RILEAVD P LHHLYDCLVF
Sbjct: 789 SVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 848
Query: 726 PQKGDRPHSNEASGSDLDG 782
PQKG+RPH+NEASGSDLDG
Sbjct: 849 PQKGERPHTNEASGSDLDG 867
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 433 bits (1113), Expect = e-119
Identities = 204/258 (79%), Positives = 230/258 (89%)
Frame = +3
Query: 9 NPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNR 188
NPPCAYQIR+AG KGV+ CWP+K DG RLSLR SM KF+S HTTLEICSWTR QPGFLNR
Sbjct: 608 NPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNR 667
Query: 189 QIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGF 368
QIITLLS+L+++DEIFW MQE+M+ +L++MLVD+DVAFDV+TASCAE GN AAIMLSAGF
Sbjct: 668 QIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAGF 727
Query: 369 KPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPS 548
KPQ+EPHLRGML+ I+AAQL LR KARIFV SGRWLMG LDELG LEQGQCF+QVS P
Sbjct: 728 KPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTPL 787
Query: 549 LENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFP 728
LE+CF KHG F+ I++NLQVIKG VVIAKNPCLHPGD+RILEAVD P LHHLYDCLVFP
Sbjct: 788 LESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFP 847
Query: 729 QKGDRPHSNEASGSDLDG 782
QKGDRPH++EASGSDLDG
Sbjct: 848 QKGDRPHTDEASGSDLDG 865
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
vesca]
Length = 1197
Score = 430 bits (1106), Expect = e-118
Identities = 203/258 (78%), Positives = 226/258 (87%)
Frame = +3
Query: 9 NPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNR 188
+PP AYQIRY G KGV+ CWP+ DG RLSLR SM KF S+HTTLEICSWTRLQPGFLNR
Sbjct: 610 DPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNR 669
Query: 189 QIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGF 368
QIITLLS+L++ DEIFW MQE M+S+L +MLVD+DVAFDV+TASCAE GN+AAIMLSAGF
Sbjct: 670 QIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGF 729
Query: 369 KPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPS 548
KPQ+EPHLRGML+ I+AAQL LR K RIFVPSGRWLMGCLDELG LEQGQCF+QVS PS
Sbjct: 730 KPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPS 789
Query: 549 LENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFP 728
LENCF KHG +F KNLQVIKG VV+AKNPCLHPGD+RILEAVD P LHHL+DCLVFP
Sbjct: 790 LENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFP 849
Query: 729 QKGDRPHSNEASGSDLDG 782
QKG RPH++EASGSDLDG
Sbjct: 850 QKGHRPHTDEASGSDLDG 867
>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
arietinum]
Length = 1201
Score = 430 bits (1105), Expect = e-118
Identities = 205/256 (80%), Positives = 227/256 (88%)
Frame = +3
Query: 15 PCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNRQI 194
P AYQIRYAG+KGV+ CWP K DGIRLSLRPSM KF S HTTLEIC+WTR QPGFLNRQI
Sbjct: 611 PSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQI 670
Query: 195 ITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKP 374
ITLLS+LD+ D IFW+MQE M+SRL++MLVD+DVAFDV+T SCAE GN AAIMLS GF P
Sbjct: 671 ITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFSP 730
Query: 375 QSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPSLE 554
++EPHLRGML+SIRAAQL LR K+RIFV SGRWLMG LDELG LEQGQCF+QVS PSLE
Sbjct: 731 KTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLE 790
Query: 555 NCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFPQK 734
NCF KHG +FS+ K LQV+KGLVVIAKNPCLHPGDVR+LEAVDVP LHHLYDCLVFPQK
Sbjct: 791 NCFSKHGSRFSE-TKTLQVVKGLVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCLVFPQK 849
Query: 735 GDRPHSNEASGSDLDG 782
G+RPH+NEASGSDLDG
Sbjct: 850 GERPHTNEASGSDLDG 865
>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
arietinum]
Length = 1247
Score = 430 bits (1105), Expect = e-118
Identities = 205/256 (80%), Positives = 227/256 (88%)
Frame = +3
Query: 15 PCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNRQI 194
P AYQIRYAG+KGV+ CWP K DGIRLSLRPSM KF S HTTLEIC+WTR QPGFLNRQI
Sbjct: 657 PSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQI 716
Query: 195 ITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKP 374
ITLLS+LD+ D IFW+MQE M+SRL++MLVD+DVAFDV+T SCAE GN AAIMLS GF P
Sbjct: 717 ITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFSP 776
Query: 375 QSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPSLE 554
++EPHLRGML+SIRAAQL LR K+RIFV SGRWLMG LDELG LEQGQCF+QVS PSLE
Sbjct: 777 KTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLE 836
Query: 555 NCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFPQK 734
NCF KHG +FS+ K LQV+KGLVVIAKNPCLHPGDVR+LEAVDVP LHHLYDCLVFPQK
Sbjct: 837 NCFSKHGSRFSE-TKTLQVVKGLVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCLVFPQK 895
Query: 735 GDRPHSNEASGSDLDG 782
G+RPH+NEASGSDLDG
Sbjct: 896 GERPHTNEASGSDLDG 911
>ref|XP_004292989.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
vesca]
Length = 1065
Score = 428 bits (1100), Expect = e-117
Identities = 202/258 (78%), Positives = 223/258 (86%)
Frame = +3
Query: 9 NPPCAYQIRYAGYKGVITCWPAKNDGIRLSLRPSMKKFDSNHTTLEICSWTRLQPGFLNR 188
+PPCAYQIRYAG+KGVI CWP++ D +LSLR SM KF+S HTTLEICSW RLQPGFLNR
Sbjct: 481 DPPCAYQIRYAGFKGVIACWPSEGDRFQLSLRRSMNKFNSQHTTLEICSWARLQPGFLNR 540
Query: 189 QIITLLSSLDIKDEIFWEMQEEMLSRLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGF 368
QIITLLS+LD+ D +F MQ++MLS L ML+D D A+DV+TASC E GN AAIMLSAGF
Sbjct: 541 QIITLLSTLDVPDMVFRRMQQQMLSNLKLMLIDMDAAYDVVTASCGEQGNAAAIMLSAGF 600
Query: 369 KPQSEPHLRGMLSSIRAAQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSNPS 548
P SEPHL GML+ IRAAQL LR K RIFVPSGRWLMGCLDELG LEQGQCFIQVSNPS
Sbjct: 601 TPHSEPHLHGMLTCIRAAQLSGLREKGRIFVPSGRWLMGCLDELGVLEQGQCFIQVSNPS 660
Query: 549 LENCFVKHGPKFSDIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPSLHHLYDCLVFP 728
LENCF KHG +FS ++KNLQVIKGLVV+AKNPCLHPGD+RILEAVD P LHHL+DCLVFP
Sbjct: 661 LENCFAKHGSRFSHVEKNLQVIKGLVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFP 720
Query: 729 QKGDRPHSNEASGSDLDG 782
QKG RPHSNEASGSDLDG
Sbjct: 721 QKGCRPHSNEASGSDLDG 738