BLASTX nr result
ID: Atropa21_contig00003488
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00003488
(454 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001234656.1| mRNA binding protein precursor [Solanum lyco... 125 4e-27
ref|XP_006349675.1| PREDICTED: chloroplast stem-loop binding pro... 122 4e-26
gb|AAP87140.1| mRNA-binding protein precursor, partial [Nicotian... 115 8e-24
ref|XP_006291238.1| hypothetical protein CARUB_v10017370mg [Caps... 106 3e-21
ref|NP_191873.1| chloroplast stem-loop binding protein-41 [Arabi... 104 1e-20
gb|EOX94778.1| Chloroplast stem-loop binding protein of 41 kDa i... 104 1e-20
gb|EOX94777.1| Chloroplast stem-loop binding protein of 41 kDa i... 104 1e-20
ref|XP_003590650.1| MRNA-binding protein [Medicago truncatula] g... 104 1e-20
ref|XP_003590649.1| MRNA-binding protein [Medicago truncatula] g... 104 1e-20
ref|XP_002878498.1| hypothetical protein ARALYDRAFT_486816 [Arab... 104 1e-20
ref|XP_002302114.1| mRNA-binding family protein [Populus trichoc... 104 1e-20
gb|EMJ01093.1| hypothetical protein PRUPE_ppa006606mg [Prunus pe... 103 2e-20
ref|XP_003536518.1| PREDICTED: chloroplast stem-loop binding pro... 103 3e-20
ref|XP_003518924.1| PREDICTED: chloroplast stem-loop binding pro... 103 3e-20
gb|ACU24107.1| unknown [Glycine max] 103 3e-20
gb|ACU24035.1| unknown [Glycine max] 103 3e-20
ref|XP_002306773.2| hypothetical protein POPTR_0005s23110g [Popu... 102 5e-20
ref|XP_004290655.1| PREDICTED: chloroplast stem-loop binding pro... 102 5e-20
gb|ESW16629.1| hypothetical protein PHAVU_007G172100g [Phaseolus... 101 9e-20
ref|XP_002520744.1| NAD dependent epimerase/dehydratase, putativ... 100 2e-19
>ref|NP_001234656.1| mRNA binding protein precursor [Solanum lycopersicum]
gi|26453355|gb|AAD21574.3| mRNA binding protein
precursor [Solanum lycopersicum]
Length = 407
Score = 125 bits (315), Expect = 4e-27
Identities = 72/113 (63%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
Frame = +1
Query: 121 FNSCHTPSISPHRXXXXXXXXXXXXXXXXXXXXFLALYSVNSRRLFSRNYFS--VVQASS 294
FNS TPSISP F+A +S+NSRR+ ++Y S VVQAS
Sbjct: 18 FNSSSTPSISPVSRISLKFPSSSLSSSLSISPYFVA-FSLNSRRVSPKSYSSTSVVQASG 76
Query: 295 AGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLTVGDETSDKMKKTPF 453
A EKKKVLIVNTNSGGHAVIGFYFAKELL SGHDVTVLTVG+E+SDKMKKTPF
Sbjct: 77 AVEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTVLTVGEESSDKMKKTPF 129
>ref|XP_006349675.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Solanum tuberosum]
Length = 401
Score = 122 bits (307), Expect = 4e-26
Identities = 73/113 (64%), Positives = 79/113 (69%), Gaps = 2/113 (1%)
Frame = +1
Query: 121 FNSCHTPSISPHRXXXXXXXXXXXXXXXXXXXXFLALYSVNSRRLFSRNYFS--VVQASS 294
FNS TPSISP FLA +S+NSRR+ +Y S VVQAS
Sbjct: 17 FNSSSTPSISP-----VSRISLKFPSSLSISPSFLA-FSLNSRRVSPNSYSSTTVVQASG 70
Query: 295 AGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLTVGDETSDKMKKTPF 453
A EKKKVLIVNTNSGGHAVIGFYFAKELL SGHDVTVLTVG+E+SDKMKKTPF
Sbjct: 71 AVEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTVLTVGEESSDKMKKTPF 123
>gb|AAP87140.1| mRNA-binding protein precursor, partial [Nicotiana tabacum]
Length = 405
Score = 115 bits (287), Expect = 8e-24
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FLA + NSRR + YF+V +SA EKKKVLIVNTNSGGHAVIGFYFAKELL SGHDV
Sbjct: 52 FLAYPTTNSRRFSTFQYFTV--QASAAEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDV 109
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVG+E+SDKMKKTPF
Sbjct: 110 TILTVGEESSDKMKKTPF 127
>ref|XP_006291238.1| hypothetical protein CARUB_v10017370mg [Capsella rubella]
gi|482559945|gb|EOA24136.1| hypothetical protein
CARUB_v10017370mg [Capsella rubella]
Length = 404
Score = 106 bits (265), Expect = 3e-21
Identities = 55/77 (71%), Positives = 63/77 (81%)
Frame = +1
Query: 223 LALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVT 402
L YS+ + R S F+V +ASS GEKK VLIVNTNSGGHAVIGFYFAKELLS+GH VT
Sbjct: 51 LFTYSLRTSRTSSPQRFTV-KASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHGVT 109
Query: 403 VLTVGDETSDKMKKTPF 453
++TVGDE+SDKMKK PF
Sbjct: 110 IMTVGDESSDKMKKPPF 126
>ref|NP_191873.1| chloroplast stem-loop binding protein-41 [Arabidopsis thaliana]
gi|75311698|sp|Q9LYA9.1|CP41A_ARATH RecName:
Full=Chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic; Short=CSP41-a; Flags: Precursor
gi|16226201|gb|AAL16101.1|AF428269_1
AT3g63140/T20O10_240 [Arabidopsis thaliana]
gi|7573443|emb|CAB87759.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|16649035|gb|AAL24369.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|22136252|gb|AAM91204.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|332646919|gb|AEE80440.1| chloroplast stem-loop
binding protein-41 [Arabidopsis thaliana]
Length = 406
Score = 104 bits (260), Expect = 1e-20
Identities = 54/77 (70%), Positives = 63/77 (81%)
Frame = +1
Query: 223 LALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVT 402
L +S+ + R S F+V +ASS GEKK VLIVNTNSGGHAVIGFYFAKELLS+GH VT
Sbjct: 53 LLTFSLRTSRRLSPQKFTV-KASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVT 111
Query: 403 VLTVGDETSDKMKKTPF 453
+LTVGDE+S+KMKK PF
Sbjct: 112 ILTVGDESSEKMKKPPF 128
>gb|EOX94778.1| Chloroplast stem-loop binding protein of 41 kDa isoform 2
[Theobroma cacao]
Length = 393
Score = 104 bits (259), Expect = 1e-20
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = +1
Query: 232 YSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLT 411
Y +SRR +S + F+V +S GEKKKVLIVNTNSGGHAVIGFYFAKELL SGH+VT+LT
Sbjct: 52 YPTSSRR-YSPSSFTV--KASGGEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILT 108
Query: 412 VGDETSDKMKKTPF 453
VGDE SDKMKK PF
Sbjct: 109 VGDEGSDKMKKPPF 122
>gb|EOX94777.1| Chloroplast stem-loop binding protein of 41 kDa isoform 1
[Theobroma cacao]
Length = 400
Score = 104 bits (259), Expect = 1e-20
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = +1
Query: 232 YSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLT 411
Y +SRR +S + F+V +S GEKKKVLIVNTNSGGHAVIGFYFAKELL SGH+VT+LT
Sbjct: 52 YPTSSRR-YSPSSFTV--KASGGEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILT 108
Query: 412 VGDETSDKMKKTPF 453
VGDE SDKMKK PF
Sbjct: 109 VGDEGSDKMKKPPF 122
>ref|XP_003590650.1| MRNA-binding protein [Medicago truncatula]
gi|355479698|gb|AES60901.1| MRNA-binding protein
[Medicago truncatula]
Length = 419
Score = 104 bits (259), Expect = 1e-20
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ S+ S+RL + S+ ++SA EKKKVLI+NTNSGGHAVIGFYFAKELL +GH V
Sbjct: 48 FLSHPSLTSKRLANHATLSI--SASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSV 105
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVGDE+SDKMKK PF
Sbjct: 106 TILTVGDESSDKMKKPPF 123
>ref|XP_003590649.1| MRNA-binding protein [Medicago truncatula]
gi|355479697|gb|AES60900.1| MRNA-binding protein
[Medicago truncatula]
Length = 401
Score = 104 bits (259), Expect = 1e-20
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ S+ S+RL + S+ ++SA EKKKVLI+NTNSGGHAVIGFYFAKELL +GH V
Sbjct: 48 FLSHPSLTSKRLANHATLSI--SASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSV 105
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVGDE+SDKMKK PF
Sbjct: 106 TILTVGDESSDKMKKPPF 123
>ref|XP_002878498.1| hypothetical protein ARALYDRAFT_486816 [Arabidopsis lyrata subsp.
lyrata] gi|297324336|gb|EFH54757.1| hypothetical protein
ARALYDRAFT_486816 [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 104 bits (259), Expect = 1e-20
Identities = 53/77 (68%), Positives = 63/77 (81%)
Frame = +1
Query: 223 LALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVT 402
L +S+ + R S F+V +ASS G+KK VLIVNTNSGGHAVIGFYFAKELLS+GH VT
Sbjct: 55 LLTFSLRTSRRLSPQGFTV-KASSVGDKKNVLIVNTNSGGHAVIGFYFAKELLSAGHGVT 113
Query: 403 VLTVGDETSDKMKKTPF 453
++TVGDE+SDKMKK PF
Sbjct: 114 IMTVGDESSDKMKKPPF 130
>ref|XP_002302114.1| mRNA-binding family protein [Populus trichocarpa]
gi|222843840|gb|EEE81387.1| mRNA-binding family protein
[Populus trichocarpa]
Length = 404
Score = 104 bits (259), Expect = 1e-20
Identities = 55/76 (72%), Positives = 65/76 (85%)
Frame = +1
Query: 226 ALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTV 405
A + SRRLF+ ++ V+AS+A EKKKVLIVNTNSGGHAVIGFYFAKELL SGH+VT+
Sbjct: 54 AAQPICSRRLFTSSF--TVKASAA-EKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTI 110
Query: 406 LTVGDETSDKMKKTPF 453
LTVG+E+SDKMKK PF
Sbjct: 111 LTVGEESSDKMKKPPF 126
>gb|EMJ01093.1| hypothetical protein PRUPE_ppa006606mg [Prunus persica]
Length = 403
Score = 103 bits (258), Expect = 2e-20
Identities = 56/74 (75%), Positives = 61/74 (82%)
Frame = +1
Query: 232 YSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLT 411
Y SRR F+R FS+ +SAGEKKKVLIVNTN GGHAVIGFYFAKELL SGH VTVLT
Sbjct: 55 YPAISRR-FNRCSFSI--KASAGEKKKVLIVNTNGGGHAVIGFYFAKELLGSGHQVTVLT 111
Query: 412 VGDETSDKMKKTPF 453
VG+E+SDKMKK PF
Sbjct: 112 VGEESSDKMKKPPF 125
>ref|XP_003536518.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Glycine max]
Length = 404
Score = 103 bits (256), Expect = 3e-20
Identities = 53/78 (67%), Positives = 61/78 (78%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ S NS + FS+ ++SA EKKKVLIVNTNSGGHA+IGFYFAKELL +GH V
Sbjct: 51 FLSYTSSNSTHFATHAAFSI--SASAAEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSV 108
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVGDE SDKMKK PF
Sbjct: 109 TILTVGDEGSDKMKKPPF 126
>ref|XP_003518924.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Glycine max]
Length = 403
Score = 103 bits (256), Expect = 3e-20
Identities = 52/78 (66%), Positives = 62/78 (79%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ YS +S + FS+ ++SA EKKKVLIVNTNSGGHA+IGFYFAKELL +GH V
Sbjct: 50 FLSYYSSSSTHFATHAAFSI--SASAAEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSV 107
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVG+E SDKMKK PF
Sbjct: 108 TILTVGEEGSDKMKKPPF 125
>gb|ACU24107.1| unknown [Glycine max]
Length = 208
Score = 103 bits (256), Expect = 3e-20
Identities = 53/78 (67%), Positives = 61/78 (78%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ S NS + FS+ ++SA EKKKVLIVNTNSGGHA+IGFYFAKELL +GH V
Sbjct: 51 FLSYTSSNSTHFATHAAFSI--SASAAEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSV 108
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVGDE SDKMKK PF
Sbjct: 109 TILTVGDEGSDKMKKPPF 126
>gb|ACU24035.1| unknown [Glycine max]
Length = 403
Score = 103 bits (256), Expect = 3e-20
Identities = 52/78 (66%), Positives = 62/78 (79%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ YS +S + FS+ ++SA EKKKVLIVNTNSGGHA+IGFYFAKELL +GH V
Sbjct: 50 FLSYYSSSSTHFATHAAFSI--SASAAEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSV 107
Query: 400 TVLTVGDETSDKMKKTPF 453
T+LTVG+E SDKMKK PF
Sbjct: 108 TILTVGEEGSDKMKKPPF 125
>ref|XP_002306773.2| hypothetical protein POPTR_0005s23110g [Populus trichocarpa]
gi|550339578|gb|EEE93769.2| hypothetical protein
POPTR_0005s23110g [Populus trichocarpa]
Length = 437
Score = 102 bits (254), Expect = 5e-20
Identities = 53/74 (71%), Positives = 64/74 (86%)
Frame = +1
Query: 232 YSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLT 411
Y SRRLF+ ++ V+AS+A EKKK+LIVNTNSGGHAVIGFYFAKELL SGH+V++LT
Sbjct: 89 YPTCSRRLFASSF--PVKASAA-EKKKILIVNTNSGGHAVIGFYFAKELLGSGHEVSILT 145
Query: 412 VGDETSDKMKKTPF 453
VG+E+SDKMKK PF
Sbjct: 146 VGEESSDKMKKPPF 159
>ref|XP_004290655.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 404
Score = 102 bits (254), Expect = 5e-20
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = +1
Query: 232 YSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLT 411
Y SRR FS FSV + A +KKKVLIVNTNSGGHAVIGFYFAKELL SGH+VT+LT
Sbjct: 56 YPTTSRR-FSPCSFSV--KAIAADKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILT 112
Query: 412 VGDETSDKMKKTPF 453
VG+E+SDKMKKTPF
Sbjct: 113 VGEESSDKMKKTPF 126
>gb|ESW16629.1| hypothetical protein PHAVU_007G172100g [Phaseolus vulgaris]
Length = 402
Score = 101 bits (252), Expect = 9e-20
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +1
Query: 220 FLALYSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDV 399
FL+ S +SR +++ FSV ++S+ EKKKVLIVNTNSGGHA+IGFYFAKELL +GH V
Sbjct: 49 FLSHASSSSRHFVNQSAFSV--SASSVEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSV 106
Query: 400 TVLTVGDETSDKMKKTPF 453
TVLTVG+E SDKMKK PF
Sbjct: 107 TVLTVGEEGSDKMKKPPF 124
>ref|XP_002520744.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis]
gi|223540129|gb|EEF41706.1| NAD dependent
epimerase/dehydratase, putative [Ricinus communis]
Length = 398
Score = 100 bits (250), Expect = 2e-19
Identities = 52/74 (70%), Positives = 58/74 (78%)
Frame = +1
Query: 232 YSVNSRRLFSRNYFSVVQASSAGEKKKVLIVNTNSGGHAVIGFYFAKELLSSGHDVTVLT 411
Y SRR + + F+V +SA KKKVLIVNTNSGGHAVIGFYFAKELL SGH+VT+ T
Sbjct: 55 YPACSRRFSASSSFTV--KASAAAKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTIFT 112
Query: 412 VGDETSDKMKKTPF 453
VGDE SDKMKK PF
Sbjct: 113 VGDENSDKMKKPPF 126