BLASTX nr result
ID: Atropa21_contig00003242
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00003242
(507 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001275069.1| RRM-containing RNA-binding protein-like prot... 82 6e-28
ref|XP_006358035.1| PREDICTED: zinc finger CCCH domain-containin... 82 1e-13
gb|ABB72821.1| RRM-containing RNA-binding protein-like protein [... 82 1e-13
ref|XP_006351235.1| PREDICTED: zinc finger CCCH domain-containin... 73 3e-11
ref|XP_004249203.1| PREDICTED: zinc finger CCCH domain-containin... 73 3e-11
ref|XP_006425005.1| hypothetical protein CICLE_v10028282mg [Citr... 70 3e-10
ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containin... 69 5e-10
ref|XP_002520438.1| RNA binding motif protein, putative [Ricinus... 69 8e-10
gb|EOX91717.1| CCCH-type zinc fingerfamily protein with RNA-bind... 65 9e-09
ref|XP_006379036.1| hypothetical protein POPTR_0009s04610g [Popu... 65 1e-08
ref|XP_002314129.1| zinc finger family protein [Populus trichoca... 65 1e-08
ref|XP_002314127.1| hypothetical protein POPTR_0009s04630g [Popu... 65 1e-08
gb|EMJ02207.1| hypothetical protein PRUPE_ppa005371mg [Prunus pe... 63 5e-08
gb|EMJ19185.1| hypothetical protein PRUPE_ppa005493mg [Prunus pe... 62 6e-08
ref|XP_003601302.1| Zinc finger CCCH domain-containing protein [... 59 7e-07
ref|XP_004296718.1| PREDICTED: zinc finger CCCH domain-containin... 59 9e-07
gb|EXC28844.1| Zinc finger CCCH domain-containing protein 40 [Mo... 58 1e-06
gb|ESW18062.1| hypothetical protein PHAVU_006G010100g [Phaseolus... 57 3e-06
ref|XP_004501986.1| PREDICTED: zinc finger CCCH domain-containin... 55 7e-06
gb|ABW81104.1| unknown [Cleome spinosa] 55 7e-06
>ref|NP_001275069.1| RRM-containing RNA-binding protein-like protein [Solanum tuberosum]
gi|83283985|gb|ABC01900.1| RRM-containing RNA-binding
protein-like protein [Solanum tuberosum]
Length = 487
Score = 81.6 bits (200), Expect(2) = 6e-28
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PMPYFNIPPM QQERAYYPSMDPQRMGA+V SQ+ GPEN+IGSEK
Sbjct: 351 PMPYFNIPPMLQQERAYYPSMDPQRMGAIVSSQDGASSSAAGSGPENKIGSEK 403
Score = 68.2 bits (165), Expect(2) = 6e-28
Identities = 33/40 (82%), Positives = 36/40 (90%)
Frame = -1
Query: 264 PMGTCNLHHLLIISSIPRLIKLPDHLPRLLPVTKLLISRS 145
PMG C+ H L IISSIPRLIKLPDHLP+LLPV+KLLISRS
Sbjct: 431 PMGICHHHRLHIISSIPRLIKLPDHLPQLLPVSKLLISRS 470
>ref|XP_006358035.1| PREDICTED: zinc finger CCCH domain-containing protein 49 [Solanum
tuberosum]
Length = 481
Score = 81.6 bits (200), Expect = 1e-13
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PMPYFNIPPM QQERAYYPSMDPQRMGA+V SQ+ GPEN+IGSEK
Sbjct: 351 PMPYFNIPPMLQQERAYYPSMDPQRMGAIVSSQDGASSSAAGSGPENKIGSEK 403
>gb|ABB72821.1| RRM-containing RNA-binding protein-like protein [Solanum tuberosum]
Length = 462
Score = 81.6 bits (200), Expect = 1e-13
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PMPYFNIPPM QQERAYYPSMDPQRMGA+V SQ+ GPEN+IGSEK
Sbjct: 351 PMPYFNIPPMLQQERAYYPSMDPQRMGAIVSSQDGASSSAAGSGPENKIGSEK 403
>ref|XP_006351235.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like
[Solanum tuberosum]
Length = 479
Score = 73.2 bits (178), Expect = 3e-11
Identities = 36/52 (69%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = -3
Query: 502 MPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGP-ENQIGSE 350
MPYFNIPPMPQQ+R YYPSMDPQRMGAV+ SQE GP EN+IGS+
Sbjct: 351 MPYFNIPPMPQQDRPYYPSMDPQRMGAVIASQEGASSSTTGSGPGENKIGSD 402
>ref|XP_004249203.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like
[Solanum lycopersicum] gi|133711805|gb|ABO36623.1|
putative RNA-binding protein [Solanum lycopersicum]
Length = 479
Score = 73.2 bits (178), Expect = 3e-11
Identities = 36/52 (69%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = -3
Query: 502 MPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGP-ENQIGSE 350
MPYFNIPPMPQQ+R YYPSMDPQRMGAV+ SQE GP EN+IGS+
Sbjct: 351 MPYFNIPPMPQQDRPYYPSMDPQRMGAVIASQEGASSSTAGSGPGENKIGSD 402
>ref|XP_006425005.1| hypothetical protein CICLE_v10028282mg [Citrus clementina]
gi|568870551|ref|XP_006488465.1| PREDICTED: zinc finger
CCCH domain-containing protein 49-like [Citrus sinensis]
gi|557526939|gb|ESR38245.1| hypothetical protein
CICLE_v10028282mg [Citrus clementina]
Length = 494
Score = 70.1 bits (170), Expect = 3e-10
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
P PYFNIPP PQQ+RAYYPSMDPQRMGA+VP+QE EN+ G EK
Sbjct: 349 PTPYFNIPPPPQQDRAYYPSMDPQRMGALVPTQEG----------ENKSGPEK 391
>ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like
[Vitis vinifera]
Length = 474
Score = 69.3 bits (168), Expect = 5e-10
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PM YFNIPP PQQER +YPSMDPQRMGA+VPSQE EN+ GS+K
Sbjct: 351 PMHYFNIPPPPQQERTFYPSMDPQRMGALVPSQE-GAPSGSAGPSENKAGSDK 402
>ref|XP_002520438.1| RNA binding motif protein, putative [Ricinus communis]
gi|223540280|gb|EEF41851.1| RNA binding motif protein,
putative [Ricinus communis]
Length = 285
Score = 68.6 bits (166), Expect = 8e-10
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQE 404
PM YFNIPP PQQER YYPSMDPQRMGAVVPSQ+
Sbjct: 167 PMHYFNIPPPPQQERTYYPSMDPQRMGAVVPSQD 200
>gb|EOX91717.1| CCCH-type zinc fingerfamily protein with RNA-binding domain
[Theobroma cacao]
Length = 495
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/53 (60%), Positives = 37/53 (69%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PM YFNIPP PQ +RA+YPSMDPQRMGA+VPS + EN+ GSEK
Sbjct: 351 PMQYFNIPPPPQLDRAFYPSMDPQRMGALVPSHDG----------ENKSGSEK 393
>ref|XP_006379036.1| hypothetical protein POPTR_0009s04610g [Populus trichocarpa]
gi|550331029|gb|ERP56833.1| hypothetical protein
POPTR_0009s04610g [Populus trichocarpa]
Length = 408
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PM YFNIPP PQQERA+YPSMDPQRMGA+V SQ+ G EN+ G EK
Sbjct: 226 PMHYFNIPPPPQQERAFYPSMDPQRMGALVGSQDGTPNGPAGSG-ENKSGLEK 277
>ref|XP_002314129.1| zinc finger family protein [Populus trichocarpa]
gi|222850537|gb|EEE88084.1| zinc finger family protein
[Populus trichocarpa]
Length = 531
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PM YFNIPP PQQERA+YPSMDPQRMGA+V SQ+ G EN+ G EK
Sbjct: 349 PMHYFNIPPPPQQERAFYPSMDPQRMGALVGSQDGTPNGPAGSG-ENKSGLEK 400
>ref|XP_002314127.1| hypothetical protein POPTR_0009s04630g [Populus trichocarpa]
gi|222850535|gb|EEE88082.1| hypothetical protein
POPTR_0009s04630g [Populus trichocarpa]
Length = 531
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
PM YFNIPP PQQERA+YPSMDPQRMGA+V SQ+ G EN+ G EK
Sbjct: 349 PMHYFNIPPPPQQERAFYPSMDPQRMGALVGSQDGTPNGPAGSG-ENKSGLEK 400
>gb|EMJ02207.1| hypothetical protein PRUPE_ppa005371mg [Prunus persica]
Length = 464
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
P+ Y+N+PP P QER++YPSMDPQRMGA+VPSQE G EN G+E+
Sbjct: 309 PVHYYNMPPPPSQERSFYPSMDPQRMGAIVPSQEGAPSGPTGSG-ENNSGAER 360
>gb|EMJ19185.1| hypothetical protein PRUPE_ppa005493mg [Prunus persica]
Length = 458
Score = 62.4 bits (150), Expect = 6e-08
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQE 404
P+ Y+N+PP P QER++YPSMDPQRMGA+VPSQE
Sbjct: 343 PVHYYNMPPPPSQERSFYPSMDPQRMGAIVPSQE 376
>ref|XP_003601302.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355490350|gb|AES71553.1| Zinc finger CCCH
domain-containing protein [Medicago truncatula]
Length = 492
Score = 58.9 bits (141), Expect = 7e-07
Identities = 31/52 (59%), Positives = 36/52 (69%)
Frame = -3
Query: 502 MPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
M Y+N PP PQQER YYPSMDPQRMGA++PSQ+ G EN+ SEK
Sbjct: 343 MLYYNNPPPPQQERNYYPSMDPQRMGALLPSQDGPPGGPSGSG-ENKPSSEK 393
>ref|XP_004296718.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
[Fragaria vesca subsp. vesca]
Length = 497
Score = 58.5 bits (140), Expect = 9e-07
Identities = 30/50 (60%), Positives = 34/50 (68%)
Frame = -3
Query: 496 YFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
Y+N+PP P QER YYPSMDPQRMGAVV SQ+ G EN GSE+
Sbjct: 348 YYNMPPPPSQERTYYPSMDPQRMGAVVRSQDGAPSGPRGSG-ENSSGSER 396
>gb|EXC28844.1| Zinc finger CCCH domain-containing protein 40 [Morus notabilis]
Length = 494
Score = 57.8 bits (138), Expect = 1e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = -3
Query: 505 PMPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
P+ Y+NIPP PQ ER +YPSMDPQRMGA+ SQE G EN+ G EK
Sbjct: 344 PLHYYNIPPPPQPERNFYPSMDPQRMGALTHSQEGASSGSTGSG-ENKPGQEK 395
>gb|ESW18062.1| hypothetical protein PHAVU_006G010100g [Phaseolus vulgaris]
Length = 480
Score = 56.6 bits (135), Expect = 3e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -3
Query: 502 MPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQE 404
M Y+N P PQQER+YYPSMDPQRMGA++PSQ+
Sbjct: 343 MLYYNNPLPPQQERSYYPSMDPQRMGALIPSQD 375
>ref|XP_004501986.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like
isoform X2 [Cicer arietinum]
Length = 485
Score = 55.5 bits (132), Expect = 7e-06
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = -3
Query: 502 MPYFNIPPMPQQERAYYPSMDPQRMGAVVPSQEXXXXXXXXXGPENQIGSEK 347
M Y+N PP QER+YYPSMDPQRMGA++PSQ+ G EN+ SEK
Sbjct: 343 MLYYNNPPPXXQERSYYPSMDPQRMGALIPSQDGPPGGPSGSG-ENKPSSEK 393
>gb|ABW81104.1| unknown [Cleome spinosa]
Length = 504
Score = 55.5 bits (132), Expect = 7e-06
Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = -3
Query: 505 PMPYFNIPPMP-QQERAYYPSMDPQRMGAVVPSQE 404
PMPY+ PP P Q+R YYPSMDPQRMGA++PSQ+
Sbjct: 342 PMPYYMHPPPPTHQDRPYYPSMDPQRMGALIPSQD 376