BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00003100
         (4846 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEL30371.1| TIR-NBS-LRR type disease resistance protein [Arac...   179   e-137
emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr...   292   e-129
emb|CBA11992.1| endonuclease-reverse transcriptase HmRTE-e01 [He...   191   e-116
gb|ADI61822.1| endonuclease-reverse transcriptase [Bombyx mori]       174   e-116
gb|EHJ64905.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   188   e-114
gb|EHJ65195.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   188   e-114
gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]         277   e-110
emb|CCH50976.1| T4.15 [Malus x robusta]                               184   e-100
gb|AAT40504.2| Polyprotein, putative [Solanum demissum]               232   2e-99
gb|ABD28426.2| RNA-directed DNA polymerase (Reverse transcriptas...   269   1e-98
gb|ABB00038.1| reverse transcriptase family member [Glycine max]      192   2e-86
ref|XP_006010506.1| PREDICTED: uncharacterized protein LOC102366...   215   2e-86
emb|CDJ90320.1| RNA-directed DNA polymerase (reverse transcripta...   176   4e-85
ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840...   182   1e-84
gb|EHJ75084.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   188   4e-79
emb|CDJ80644.1| Endonuclease exonuclease phosphatase and RNA-dir...   172   1e-78
emb|CDJ92648.1| RNA-directed DNA polymerase (reverse transcripta...   174   2e-78
gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Tritic...   167   4e-78
ref|XP_005753688.1| PREDICTED: RNA-directed DNA polymerase from ...   159   2e-75
gb|EHJ71530.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   185   2e-74

>gb|AEL30371.1| TIR-NBS-LRR type disease resistance protein [Arachis hypogaea]
          Length = 1939

 Score =  179 bits (453), Expect(4) = e-137
 Identities = 113/283 (39%), Positives = 150/283 (53%), Gaps = 2/283 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            F  I R+ K+    R ST+VP+Y+ KGDIQ+  NYRGI L+SH MK+W            
Sbjct: 1002 FYEILRSKKMPDEWRKSTLVPIYRIKGDIQSCGNYRGIKLMSHTMKLWG----------- 1050

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
                       G  T                           +EK   +     LW+ LE
Sbjct: 1051 ----------KGDRT--------------------------EVEKRDTRYQGRFLWKVLE 1074

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
             R V + YIRAIKDMY+ A T V+T GG  E F + + LHQGS+LS +LF LV++ LT H
Sbjct: 1075 KRRVRIAYIRAIKDMYEGATTSVKTQGGVTEEFPIGIGLHQGSSLSPYLFTLVLEVLTEH 1134

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLE--SIWIK*EKTEYMEYKFSDVTQ 2857
            IQE V  CM+FADDI+L+ ++   +  KLE+W+  LE   + I   KTEYME KFS   +
Sbjct: 1135 IQEPVPWCMLFADDIVLMGESREDLNKKLELWREALEVYGLRISRSKTEYMECKFSLRRE 1194

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDVAHYLEQG 2728
             + +EVKI    + K   FKYL  IIQ N  I++DV H ++ G
Sbjct: 1195 NSNIEVKIGENILRKVKSFKYLGCIIQDNGEIEQDVNHRIQAG 1237



 Score =  139 bits (349), Expect(4) = e-137
 Identities = 71/173 (41%), Positives = 114/173 (65%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            +V+RV DRII++KLV+ G  F+ I+AYAPQ+   E+ K  F E+L+ +V+ I   +KI L
Sbjct: 576  DVKRVGDRIISIKLVVEGGAFHVISAYAPQVGSDEQHKISFWEDLESLVQGIPLGDKIFL 635

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
             G+ NGH+     GY  +H           G ++LDF   F+L+IA++ F+KR++HL+TY
Sbjct: 636  GGDLNGHVGREVTGYGSIHGGHGFGVINAEGKTILDFSSTFDLLIANTCFKKRDEHLITY 695

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKKRK 4326
            +S +  +QID+FLLR  DR    +CK+IP E+L+T +R++V+D  V+   +++
Sbjct: 696  KSGMTSSQIDFFLLRRVDRKFCINCKIIPGESLTTQHRVLVLDFRVEQKLRKR 748



 Score =  135 bits (339), Expect(4) = e-137
 Identities = 69/158 (43%), Positives = 99/158 (62%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG  KWR  S   CDKKV  +LK KFYR  + PA++YG EC   K  H  K+ V+ M+M
Sbjct: 1235 QAGWSKWRSASGFICDKKVPLKLKGKFYRTAIRPAMLYGTECWAAKGEHEHKLSVAEMKM 1294

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
            +RW+ G+TR D I+N+ IR++V V  + +KM E RLRWF HV RR  +  VRR + +   
Sbjct: 1295 LRWMSGHTRLDKIRNEDIRERVGVAPIVEKMVESRLRWFGHVGRRPIEHLVRRVDEMEDG 1354

Query: 2377 GVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWR 2264
               +GRGRPKK   EV+++D+ + +    + L  K++R
Sbjct: 1355 QKAKGRGRPKKTIHEVVKRDLHETEAIHSIVL-HKVYR 1391



 Score =  111 bits (278), Expect(4) = e-137
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
 Frame = -1

Query: 4228 SGDADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSM--QC*W 4055
            +G A+ MW   +E IR  A+E  G S G      G R +           K+ +  +C  
Sbjct: 782  NGSAEEMWREMAEVIRRTAKESFGESKGI-----GPRDKESWWWNASIQEKIKIKRECFK 836

Query: 4054 DTLMRRNK---ERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKS 3884
            +  + RN    E+YKA KKE K+ ++ A+T  +E LY+ L+ + G++ +YR+  +RER++
Sbjct: 837  EWSLCRNVDNWEKYKAAKKETKVAVSEARTRAYEGLYQSLDTKEGEKGIYRIAKSRERRT 896

Query: 3883 CDMYQVKCIKD*NGEVLTEKAYIRWRWQTYFHKL*MK-----KGIGISC*K----N*SIL 3731
             D+ QVKCIKD + EVL ++  I  RW++YF++L  +       +G  C +    N +  
Sbjct: 897  RDLDQVKCIKDKDREVLAQEEKINERWKSYFYELFNEGQKTLPSLGRLCTREEDQNFNYY 956

Query: 3730 RAV*TLIIIEA*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
            R +    + E        A+ +M+   A  PD I ++ WK    KG  WLTKLF
Sbjct: 957  RRIRDFEVKE--------ALKQMKNGRAVGPDNIPIEVWKGLGGKGINWLTKLF 1002


>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
            domestica]
          Length = 622

 Score =  292 bits (747), Expect(3) = e-129
 Identities = 147/286 (51%), Positives = 204/286 (71%), Gaps = 2/286 (0%)
 Frame = -2

Query: 3579 LNYFNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMR 3400
            ++ FN I +T K+    R S +VP+YKNKGD+QN  NYRGI L+SH MK+W+ ++E R+R
Sbjct: 204  IDLFNRILKTKKMPNEWRTSPLVPIYKNKGDVQNCMNYRGIKLMSHTMKLWERVIEHRLR 263

Query: 3399 RDV*ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWR 3220
            ++  +S+NQF  M G+ST+  I+L+RRL E+YRD K+DLHM+FI+LEK YD+V R+++WR
Sbjct: 264  QETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVSRDIIWR 323

Query: 3219 CLESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQL 3040
             LE + V V YI+AIKDMY+ AKT VRT  G  E F + + LHQGS+LS +LF LV+D+L
Sbjct: 324  ILEKKGVRVAYIQAIKDMYEGAKTAVRTYEGQTESFPITVGLHQGSSLSPYLFALVMDEL 383

Query: 3039 TRHIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLES--IWIK*EKTEYMEYKFSD 2866
            T HIQ+++  CM+FA DI+LID+T  GV  KL +W+  LES  + +   KTEYME KFS 
Sbjct: 384  TGHIQDDIPWCMLFAYDIVLIDETQEGVNAKLNLWREVLESKGLCLSRSKTEYMECKFSA 443

Query: 2865 VTQETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDVAHYLEQG 2728
               +  + V+I  Q IPK  RF+YL  I+Q N  +DED+ H ++ G
Sbjct: 444  NGSQNELGVRIGDQEIPKSDRFRYLGSILQKNGELDEDLNHRIQAG 489



 Score =  122 bits (306), Expect(3) = e-129
 Identities = 68/163 (41%), Positives = 90/163 (55%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG MKW+  S V CD+++  +LK KFYR  + PA++                       
Sbjct: 487  QAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAML----------------------- 523

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
                     KD I+N+ IR KV V  +E KMRE  LRWF HV+RR  DAP+RRC+  T  
Sbjct: 524  ---------KDKIRNEDIRGKVGVAEIEGKMRENWLRWFGHVQRRPTDAPIRRCDYGTKV 574

Query: 2377 GVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIRI 2249
              R+GRGRP+K   E +R+D+  L L EDMT DR  WRS+I +
Sbjct: 575  QGRKGRGRPRKTLEETLRKDLEYLDLMEDMTQDRAQWRSKIHV 617



 Score = 99.0 bits (245), Expect(3) = e-129
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
 Frame = -1

Query: 4195 SECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSMQC*WDTLMRR---NKER 4025
            + CIR+VA+EVLG S G++          + S    +  K   +C       R   N ER
Sbjct: 2    ASCIRKVAKEVLGESKGFAT-------HQKESWWWNEEVKAKKECCKALYKDRTDENGER 54

Query: 4024 YKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQVKCIKD*N 3845
            Y+  K+E K  +  AK   ++ +YK L+ + G+  +Y+L   RE+K+ D+ QV+CIKD +
Sbjct: 55   YRKAKQEAKKAVREAKLAAYDDMYKRLDTKEGELDIYKLARAREKKTRDLNQVRCIKDED 114

Query: 3844 GEVLTEKAYIRWRWQTYFHKL*MKKGIGISC----------*KN*SILRAV*TLIIIEA* 3695
            G+VL  +  ++ +W+ YFH L   +G   S            +N S  R +         
Sbjct: 115  GKVLATENAVKDKWRGYFHNL-FNEGHERSASLGELSNSEECRNYSFYRRI--------R 165

Query: 3694 RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
            +   + A+ KM+ R A  PD+I ++ WK   E G  WL  LF
Sbjct: 166  KEEVVVALKKMKHRKAVGPDDIPIEVWKVLGETGITWLIDLF 207


>emb|CBA11992.1| endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene]
          Length = 990

 Score =  191 bits (485), Expect(4) = e-116
 Identities = 104/276 (37%), Positives = 165/276 (59%), Gaps = 2/276 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN I  T K+    R S + P+YK +G +Q+  +YRGI L+SH MK+++ M+++R+RR+ 
Sbjct: 546  FNHILNTGKMPHQWRLSFITPIYKGRGSVQDCGSYRGIKLMSHTMKLFERMIDLRLRREC 605

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             +SE+Q+    G  T+  I  +R L E YR+K+R LH+ F++L+K +D VPR+ +W  L 
Sbjct: 606  TVSESQYGFQPGSGTMDAIFALRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALR 665

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
            S+ +   YI  I+ MY D+ + VRT  GD   F + + +HQGS LS FLF +V+D ++ H
Sbjct: 666  SKGIPEAYIEIIRGMYHDSASMVRTAVGDTRPFPITVGVHQGSALSPFLFNVVLDTVSAH 725

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLES--IWIK*EKTEYMEYKFSDVTQ 2857
            IQ++    M++ADDI LI +    +  K+ +WK TLE+  + +   KTEYM     D + 
Sbjct: 726  IQDQPPWLMMYADDIALIAENRLTLERKVNLWKGTLENGGLKLNVSKTEYMACGSRDSS- 784

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
                 + I  +   K  +F+YL  ++  +  ID DV
Sbjct: 785  ----TILIGPEPAVKSEKFRYLGSVMHESGGIDHDV 816



 Score =  131 bits (330), Expect(4) = e-116
 Identities = 65/152 (42%), Positives = 94/152 (61%)
 Frame = -1

Query: 2722 KWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWIC 2543
            KWR  + V CD+++  +LK   Y+ +V P L+YG+EC P  + H Q++ V+ M+M+RW+C
Sbjct: 826  KWREVTGVVCDRRIPPKLKGLIYKSIVRPVLLYGSECWPALSRHTQELHVTEMKMLRWMC 885

Query: 2542 GYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRRG 2363
            G TR D I+N  IR  + V  V DK++E RLRWF HV RR ++   R+C  + + G  R 
Sbjct: 886  GVTRSDRIRNTFIRGSLGVRDVADKLQERRLRWFGHVTRRPKNYVGRKCLAILVPGA-RP 944

Query: 2362 RGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIW 2267
             GRP+K W +V+ QDM    LT +   DR  W
Sbjct: 945  PGRPRKRWLDVVMQDMRANGLTTEDAKDRAKW 976



 Score =  107 bits (266), Expect(4) = e-116
 Identities = 59/171 (34%), Positives = 95/171 (55%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            EV R +DR++ +++++ G+  N I+AYAPQ   +  +K  F E+ + V+  +  TE +++
Sbjct: 127  EVDRRSDRLMRVRVLIEGVITNLISAYAPQAGCSASEKETFWEQYEGVLLAVPSTELVLV 186

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
             G+ NGH+      Y  VH           G ++L    A +L + ++ FQK  +HL+TY
Sbjct: 187  GGDLNGHVGRAAEPYERVHGGFGHGLRNAEGENILRTCIASDLAVVNTFFQKNSQHLITY 246

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKK 4332
            +     TQIDY L R    G   +CKVIP E+L+  +RL+VMD  V   +K
Sbjct: 247  KCGSHSTQIDYLLTRRCHMGRVTNCKVIPGESLTAQHRLLVMDFNVTPKRK 297



 Score = 63.9 bits (154), Expect(4) = e-116
 Identities = 50/217 (23%), Positives = 95/217 (43%)
 Frame = -1

Query: 4219 ADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSMQC*WDTLMR 4040
            A   W R    I    R VLG S G  V  + T    +      + +K + +   ++   
Sbjct: 335  AQEAWDRAQSAIIAAGRRVLGVSRGGRVIDKETWWWNDEVQEVTREKKAAFKKWQESNSP 394

Query: 4039 RNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQVKC 3860
             ++  Y   K+  K  +  A++ +   LY +LE   G + +Y+L  +R++ + D+ +  C
Sbjct: 395  EDRLEYTVAKRASKRAVARARSESLSPLYDKLETVEGQKLIYKLARSRDKVTQDIAKCLC 454

Query: 3859 IKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIGISC*KN*SILRAV*TLIIIEA*RLRTL 3680
            ++D  G +L     ++ RW++YF +L +      S   +      +   I ++     T 
Sbjct: 455  VRDSQGTLLCNHDSVKERWRSYFQEL-LNTQHPCSLHHDPPPNLGLIAPITLD----ETR 509

Query: 3679 GAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
              + +M+   A  PD+I ++ WK+    G   LT LF
Sbjct: 510  NCLRRMKNGKAVGPDDIPIEAWKSLGSLGVLMLTDLF 546


>gb|ADI61822.1| endonuclease-reverse transcriptase [Bombyx mori]
          Length = 996

 Score =  174 bits (442), Expect(4) = e-116
 Identities = 95/262 (36%), Positives = 153/262 (58%), Gaps = 2/262 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN + R++K+    R ST+VP+YK KG     +NYRGI LLSH MK+++ +++ R+R + 
Sbjct: 548  FNCVLRSSKMPAAWRLSTIVPIYKGKGSKYECSNYRGIKLLSHTMKLYERVIDSRLRSEC 607

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             +S+N +  + G ST   +  +  + E+YR+K R L++ F+++EK +D+VPR+ +W  L 
Sbjct: 608  SLSKNHYGFVQGLSTTDPMFALNTIAEEYREKLRPLYVAFLDMEKAFDRVPRDTIWWSLR 667

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
             ++V   Y+  I DMY DA++ VRTV G  +   V   LHQGS LS FLF +VID LT  
Sbjct: 668  KKNVPEHYVNVIIDMYRDARSMVRTVVGQTKPIAVAEGLHQGSVLSPFLFGMVIDSLTEV 727

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLES--IWIK*EKTEYMEYKFSDVTQ 2857
             Q       I+ADD+ +  ++   + + L +WK  L++  + +   KT YM   F+D   
Sbjct: 728  AQSSASWTFIYADDVAICTESRTKLREALLLWKQQLQAGGLILSVAKTHYM--SFNDPDP 785

Query: 2856 ETYVEVKIEAQAIPKGGRFKYL 2791
                 + I+ Q +    ++KYL
Sbjct: 786  GDNSPISIDGQLVNMCDQYKYL 807



 Score =  125 bits (315), Expect(4) = e-116
 Identities = 61/158 (38%), Positives = 96/158 (60%)
 Frame = -1

Query: 2725 MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWI 2546
            +KWR  S V CD+++  +LK   Y+ ++ P L+YG+E       +V  ++V+ M+M+RW+
Sbjct: 830  LKWREVSGVTCDRRMPVKLKGMIYKTIIRPVLMYGSETWAATKRNVHTIQVAEMKMLRWM 889

Query: 2545 CGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRR 2366
            CG TR D I+N+ +R  + V  + DKM+E RLRW+ HVKR+  D        L + G RR
Sbjct: 890  CGVTRLDKIRNEYVRGSLGVRDIADKMQESRLRWYGHVKRKQPDYVGNLALLLDLPG-RR 948

Query: 2365 GRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIR 2252
             RGRPK  W +V+ +D  +  + ++   DR  WRS++R
Sbjct: 949  PRGRPKTRWRDVVLKDKRECNVADEDVEDRAKWRSKVR 986



 Score =  110 bits (276), Expect(4) = e-116
 Identities = 63/173 (36%), Positives = 95/173 (54%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            EV R+NDR++++K+++ G   N I+AYAPQ   +  +K  F   L++ +R I   E ++L
Sbjct: 129  EVNRINDRLMSLKVLVEGEVINVISAYAPQAGCSRAEKDSFWTTLEDHLRQIPSKETMLL 188

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
             G+ NGHI T    +  VH           G  +L    AF+L I ++ F K+ +H +TY
Sbjct: 189  GGDLNGHIGTENKAFKRVHGGHGFGTINEEGEVILSTAAAFDLAITNTFFAKKPEHTITY 248

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKKRK 4326
            +S    +QIDY L+     G   +CKVIP E   T +R+VVMD+  K   K K
Sbjct: 249  KSGQTTSQIDYILVNRAYIGRVTNCKVIPGECAVTQHRIVVMDMLFKKTSKTK 301



 Score = 81.3 bits (199), Expect(4) = e-116
 Identities = 60/222 (27%), Positives = 104/222 (46%)
 Frame = -1

Query: 4222 DADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSMQC*WDTLM 4043
            D D++W   S+ I +     LG + G  ++ + T    E      + +K + +    T  
Sbjct: 336  DIDNIWDHLSKSIVKAGNITLGRTKGGRINNKETWWWTEAVQNAIQKKKDAFKTWQSTQT 395

Query: 4042 RRNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQVK 3863
              ++ERYK  KKE K  +   + +  + +Y++LE + G + +++L   R   + D  + +
Sbjct: 396  SEDQERYKRIKKETKKIVAVERAVALKTMYEQLETKEGQKCIFKLAKQRCWSTRDPTRCR 455

Query: 3862 CIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIGISC*KN*SILRAV*TLIIIEA*RLRT 3683
             +KD NGE+L   + +   W  Y+ +L       I   K   ++R +  +  I     + 
Sbjct: 456  AVKDPNGELLYGDSDVLSAWHQYYEQLLNPTQAAIQLTK---VVRNIGLIPPIRPNEFKM 512

Query: 3682 LGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF*CYL 3557
              A+ KM  + AT PD I ++ WK   E G E LTKLF C L
Sbjct: 513  --ALEKMPNKKATGPDGIPVEAWKCLREHGIETLTKLFNCVL 552


>gb|EHJ64905.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 985

 Score =  188 bits (478), Expect(4) = e-114
 Identities = 102/276 (36%), Positives = 166/276 (60%), Gaps = 2/276 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN +  T  +    R+S + P+YK +G +Q+  +YRG+ ++SH MK+++ M+++R+RR+ 
Sbjct: 545  FNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRLRREC 604

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             +SE Q+    G  T+  I  +R L E YR+K+R LH+ F++L+K +D VPR+ +W  L 
Sbjct: 605  TVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALR 664

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
             + +   YI  I+DMY D+ + VRT  GD + F + + LHQGS LS FLF +V+D ++ +
Sbjct: 665  FKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDTVSAN 724

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLESIWIK*E--KTEYMEYKFSDVTQ 2857
            IQ++    M++ADDI LID++   +  ++ +WK TLE+  +K    KTEYM     D   
Sbjct: 725  IQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMACGSPD--- 781

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
                 + I  +   K  +F+YL  I+  +  ID DV
Sbjct: 782  --SCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDV 815



 Score =  130 bits (328), Expect(4) = e-114
 Identities = 65/157 (41%), Positives = 96/157 (61%)
 Frame = -1

Query: 2722 KWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWIC 2543
            KWR  + V CD+++  +LK   Y+ ++ P L+YG+EC P  + H Q++ V+ M+M+RW+C
Sbjct: 825  KWREVTGVVCDRRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMC 884

Query: 2542 GYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRRG 2363
            G TR D I+N  IR  + V  V DK++E RLRW+ HV RR E+   + C  +++ G  R 
Sbjct: 885  GVTRADRIRNTFIRGSLGVRDVADKLQESRLRWYGHVARRPENYVGKICLDMSVPGA-RP 943

Query: 2362 RGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIR 2252
             GRP+K W + ++QDM    LT     DR  WRS  R
Sbjct: 944  PGRPRKRWLDTVKQDMRANGLTTADAKDRAKWRSLSR 980



 Score =  105 bits (261), Expect(4) = e-114
 Identities = 61/171 (35%), Positives = 94/171 (54%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            EV R  DR++ +++++ G+  N I+AY PQ   +  +K  F E+ +EV+R I   E I++
Sbjct: 126  EVDRRCDRLMRVRVLIEGVITNLISAYTPQAGCSGSEKESFWEQFEEVLRAIPAAEVIIV 185

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
             G+ NGH+      +  VH           G ++L    A +L + ++ FQK  +HL+TY
Sbjct: 186  GGDLNGHVGRAAETFDRVHGGFGYGRRNAEGENILRTCIASDLAVVNTFFQKTPQHLITY 245

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKK 4332
            +S    TQIDY L R        +CKVIP E+L+  +RL+VMD  V   KK
Sbjct: 246  KSGSHSTQIDYLLTRRCHISKVTNCKVIPGESLTAQHRLLVMDYVVTPKKK 296



 Score = 62.0 bits (149), Expect(4) = e-114
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 3/220 (1%)
 Frame = -1

Query: 4219 ADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSMQC*WDTLMR 4040
            A  +W R    I    + VLG S G  V  + T    +      + +K + +    +   
Sbjct: 334  AQEVWDRAQSAIITAGKRVLGLSKGGRVIDKETWWWNDEVQEVIREKKTAFKKWQQSNSP 393

Query: 4039 RNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQVKC 3860
             ++  Y A K+  K  +  A++     LY  LE   G + +Y+L   R++ + D+ +   
Sbjct: 394  EDRLEYIAAKRASKRAVARARSDRLSPLYDTLETAEGQKLIYKLARARDKATQDIAKCLS 453

Query: 3859 IKD*NGEVLTEKAYIRWRWQTYFHKL*MKK---GIGISC*KN*SILRAV*TLIIIEA*RL 3689
            +KD  G +L   A ++ RW+ YF +L   +    +      N  ++  +           
Sbjct: 454  VKDSQGTLLCNHASVKERWRCYFKELLNTQHPCSLPTEIPPNLGLIAPITP--------D 505

Query: 3688 RTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
             T   + +M+ R A  PD+I ++ WK+    G   LT LF
Sbjct: 506  ETRNCLRRMKNRKAVGPDDIPIEAWKSLGSLGVLILTDLF 545


>gb|EHJ65195.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 1253

 Score =  188 bits (478), Expect(4) = e-114
 Identities = 102/276 (36%), Positives = 166/276 (60%), Gaps = 2/276 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN +  T  +    R+S + P+YK +G +Q+  +YRG+ ++SH MK+++ M+++R+RR+ 
Sbjct: 813  FNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRLRREC 872

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             +SE Q+    G  T+  I  +R L E YR+K+R LH+ F++L+K +D VPR+ +W  L 
Sbjct: 873  TVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALR 932

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
             + +   YI  I+DMY D+ + VRT  GD + F + + LHQGS LS FLF +V+D ++ +
Sbjct: 933  FKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDTVSAN 992

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLESIWIK*E--KTEYMEYKFSDVTQ 2857
            IQ++    M++ADDI LID++   +  ++ +WK TLE+  +K    KTEYM     D   
Sbjct: 993  IQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMACGSPD--- 1049

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
                 + I  +   K  +F+YL  I+  +  ID DV
Sbjct: 1050 --SCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDV 1083



 Score =  130 bits (327), Expect(4) = e-114
 Identities = 64/154 (41%), Positives = 95/154 (61%)
 Frame = -1

Query: 2722 KWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWIC 2543
            KWR  + V CD+++  +LK   Y+ ++ P L+YG+EC P  + H Q++ V+ M+M+RW+C
Sbjct: 1093 KWRDVTGVVCDRRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMC 1152

Query: 2542 GYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRRG 2363
            G TR D I+N  IR  + V  V DK++E RLRW+ HV RR E+   + C  +++ G  R 
Sbjct: 1153 GVTRADRIRNTFIRGSLGVRDVADKLQESRLRWYGHVARRPENYVGKICLDMSVPGA-RP 1211

Query: 2362 RGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRS 2261
             GRP+K W + ++QDM    LT     DR  WRS
Sbjct: 1212 PGRPRKRWLDTVKQDMRANGLTTADAKDRAKWRS 1245



 Score =  105 bits (261), Expect(4) = e-114
 Identities = 61/171 (35%), Positives = 94/171 (54%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            EV R  DR++ +++++ G+  N I+AY PQ   +  +K  F E+ +EV+R I   E I++
Sbjct: 394  EVDRRCDRLMRVRVLIEGVITNLISAYTPQAGCSGSEKESFWEQFEEVLRAIPAAEVIIV 453

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
             G+ NGH+      +  VH           G ++L    A +L + ++ FQK  +HL+TY
Sbjct: 454  GGDLNGHVGRAAETFDRVHGGFGYGRRNAEGENILRTCIASDLAVVNTFFQKTPQHLITY 513

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKK 4332
            +S    TQIDY L R        +CKVIP E+L+  +RL+VMD  V   KK
Sbjct: 514  KSGSHSTQIDYLLTRRCHISKVTNCKVIPGESLTAQHRLLVMDYVVTPKKK 564



 Score = 62.0 bits (149), Expect(4) = e-114
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 3/220 (1%)
 Frame = -1

Query: 4219 ADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSMQC*WDTLMR 4040
            A  +W R    I    + VLG S G  V  + T    +      + +K + +    +   
Sbjct: 602  AQEVWDRAQSAIITAGKRVLGLSKGGRVIDKETWWWNDEVQEVIREKKTAFKKWQQSNSP 661

Query: 4039 RNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQVKC 3860
             ++  Y A K+  K  +  A++     LY  LE   G + +Y+L   R++ + D+ +   
Sbjct: 662  EDRLEYIAAKRASKRAVARARSDRLSPLYDTLETAEGQKLIYKLARARDKATQDIAKCLS 721

Query: 3859 IKD*NGEVLTEKAYIRWRWQTYFHKL*MKK---GIGISC*KN*SILRAV*TLIIIEA*RL 3689
            +KD  G +L   A ++ RW+ YF +L   +    +      N  ++  +           
Sbjct: 722  VKDSQGTLLCNHASVKERWRCYFKELLNTQHPCSLPTEIPPNLGLIAPITP--------D 773

Query: 3688 RTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
             T   + +M+ R A  PD+I ++ WK+    G   LT LF
Sbjct: 774  ETRNCLRRMKNRKAVGPDDIPIEAWKSLGSLGVLILTDLF 813


>gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 562

 Score =  277 bits (708), Expect(3) = e-110
 Identities = 145/283 (51%), Positives = 195/283 (68%), Gaps = 2/283 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN I R+ K+    R ST+VP+YKNKGDIQ+  NYRGI L++H MK+W+ ++E  +R++ 
Sbjct: 97   FNEILRSKKMPGEWRKSTLVPIYKNKGDIQSCENYRGIKLMTHTMKLWERVIERGLRKET 156

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             ++ENQF  MSG+S    I+L+RR+ E+YR  KRDLHM+FI+LEK YD+VPREVLW+ LE
Sbjct: 157  QVTENQFGFMSGRSITEAIYLLRRMMERYRSNKRDLHMVFIDLEKAYDRVPREVLWKVLE 216

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
               V + YIRAIKDMYD A T V+T GG  E F + + LHQGS+LS +LF +V++ LT H
Sbjct: 217  KMRVRIAYIRAIKDMYDGATTSVKTQGGVTEEFPIGIGLHQGSSLSPYLFTIVLEVLTEH 276

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLE--SIWIK*EKTEYMEYKFSDVTQ 2857
            IQE V  C++FADDI+L+ +    +  KLE+WK  LE   + I   KTEYME KFS   +
Sbjct: 277  IQEPVPWCILFADDIVLMGELREDLNKKLELWKEALEVYGLRISRSKTEYMECKFSLRRE 336

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDVAHYLEQG 2728
             T +EV+I    + K   FKYL  IIQ N  I++DV H ++ G
Sbjct: 337  NTNIEVEIGENILRKVKSFKYLGCIIQDNGEIEQDVNHRIQAG 379



 Score =  127 bits (320), Expect(3) = e-110
 Identities = 63/136 (46%), Positives = 88/136 (64%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG  KWR  S   CDKKV  +LK KFYR  + PA++YG EC   K  H  K+ V+ ++M
Sbjct: 377  QAGWSKWRSASGFICDKKVPLKLKGKFYRTAIRPAMLYGTECCAAKGEHEHKLSVAEVKM 436

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
            +RW+ G+TR D I+N+ IR++V V  + +K+ E RLRWF HV+RR  + PVRR + +   
Sbjct: 437  LRWMSGHTRLDKIRNEDIRERVGVAPIVEKIVESRLRWFGHVRRRPIEHPVRRVDEMEDG 496

Query: 2377 GVRRGRGRPKKNWGEV 2330
               +GRGRPKK   E+
Sbjct: 497  QRAKGRGRPKKTIHEL 512



 Score = 45.4 bits (106), Expect(3) = e-110
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
 Frame = -1

Query: 3853 D*NGEVLTEKAYIRWRWQTYFHKL*MK-----KGIGISC*----KN*SILRAV*TLIIIE 3701
            D +GEVL ++  I  RW++YF++L  +       +G  C     KN    R +    + E
Sbjct: 2    DKDGEVLAQEEKINERWKSYFYELFNEGQKTLSSLGRLCTREKDKNFDYYRRIRDFEVKE 61

Query: 3700 A*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
            A        + +M+   A  PD I ++ WK+  EK   WLTKLF
Sbjct: 62   A--------LNQMKNDRAVGPDNIPIEVWKDLGEKDINWLTKLF 97


>emb|CCH50976.1| T4.15 [Malus x robusta]
          Length = 986

 Score =  152 bits (383), Expect(3) = e-100
 Identities = 69/122 (56%), Positives = 96/122 (78%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN I +T K+    R ST+VP+YKNKGD+QN  NYRGI L+SH MK+W+ ++E R+R++ 
Sbjct: 603  FNRILKTKKMPNEWRTSTLVPIYKNKGDVQNCMNYRGIKLMSHTMKLWERVIEHRLRQET 662

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             +S+NQF  M G+ST+  I+L+RRL E+YRD K+DLHM+FI+LEK YD+VPR++LWR LE
Sbjct: 663  RVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVPRDILWRILE 722

Query: 3210 SR 3205
             +
Sbjct: 723  KK 724



 Score =  149 bits (375), Expect(3) = e-100
 Identities = 74/167 (44%), Positives = 113/167 (67%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            +V+RV DRI+A+K+V+     N I+AYAPQ+ L    K +F E+L ++V+ I QTEK+ +
Sbjct: 177  DVKRVGDRIMAIKIVIRQELINVISAYAPQVGLDTSSKEKFWEDLGDLVQGIAQTEKLFI 236

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
             G+ NGH+   TG Y   H           G ++LDF  A++L +A++ F+KRE+H++TY
Sbjct: 237  GGDLNGHVGRETGNYRGFHGGHGFGERNEDGEAILDFAMAYDLFLANTFFKKREEHVITY 296

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVK 4344
            +S  +KTQID+ L+R GDR   KDCKVIP E+++  +RL+VMD+ +K
Sbjct: 297  KSGSSKTQIDFLLMRKGDRITCKDCKVIPGESVANQHRLLVMDVLIK 343



 Score =  117 bits (293), Expect(3) = e-100
 Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 10/242 (4%)
 Frame = -1

Query: 4264 KEKLVAIGARSSSGDADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXK 4085
            KEK++        G+A  MW   + CIR+VA+EVLG S G++   + +    E      K
Sbjct: 371  KEKVITQCVWDREGEASQMWDSMASCIRKVAKEVLGESKGFAPHQKESWWWNEEVQTKVK 430

Query: 4084 PRKLSMQC*WDTLMRRNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLD 3905
             +K   +  +      N ERY+  K+E K  +  AK   ++ +YK L+ + G+  +Y+L 
Sbjct: 431  AKKECCKALYKDRTDENGERYRKAKQEAKKAVREAKLAAYDDMYKRLDTKEGELDIYKLA 490

Query: 3904 NTRERKSCDMYQVKCIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIGISC--------- 3752
              RE+K+ D+ QV+CIKD +G+VL  +  ++ RW+ YFH L   +G   S          
Sbjct: 491  RAREKKTRDLNQVRCIKDEDGKVLATENAVKDRWRGYFHNL-FNEGHERSASLWELSNSE 549

Query: 3751 -*KN*SILRAV*TLIIIEA*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTK 3575
              +N S  R +         +   + A+ KM+ R A  PD+I ++ WK   E G  WLT 
Sbjct: 550  ECRNYSFYRRI--------RKEEVVVALKKMKHRKAIGPDDIPIEVWKVLGETGITWLTD 601

Query: 3574 LF 3569
            LF
Sbjct: 602  LF 603



 Score =  184 bits (467), Expect = 3e-43
 Identities = 88/163 (53%), Positives = 117/163 (71%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG MKW+  S V CD+++  +LK KFYR  + PA++YG EC  +K+ HV KM V+ MRM
Sbjct: 819  QAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAMLYGTECWAVKHQHVHKMGVAEMRM 878

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
            +RW+CG+TRKD I+N+ IR KV V  ++ KMRE +LRWF HV+RR  DAP+RRC+  T  
Sbjct: 879  LRWMCGHTRKDKIRNEDIRGKVGVAEIQGKMRENQLRWFGHVQRRPTDAPIRRCDYGTEV 938

Query: 2377 GVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIRI 2249
              RRGRGRP+K   E +R+D+  L LT+DMT DR  WRS+I I
Sbjct: 939  QGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDRAQWRSKIHI 981


>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
          Length = 868

 Score =  232 bits (592), Expect(2) = 2e-99
 Identities = 109/160 (68%), Positives = 128/160 (80%)
 Frame = -1

Query: 2725 MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWI 2546
            MKWR+ S V CDKK+  +LK KFYRVVV PAL+YGAEC P+KN HV KM V+ MRM+RW+
Sbjct: 531  MKWRLASGVLCDKKISPKLKGKFYRVVVRPALLYGAECWPVKNAHVHKMHVAEMRMLRWM 590

Query: 2545 CGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRR 2366
            CG+TR D I+N+VIR+KV V  V DK+RE RLRWF HVKRR  DAPVRRCE + + G RR
Sbjct: 591  CGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAPVRRCEVMVVEGTRR 650

Query: 2365 GRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIRIE 2246
            GRGRPKK W EVIRQD+  L +TEDMTLDRK WRSRI++E
Sbjct: 651  GRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSRIKVE 690



 Score =  160 bits (406), Expect(2) = 2e-99
 Identities = 91/166 (54%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
 Frame = -2

Query: 3234 EVLWRCLESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFL 3055
            ++++ CL S S         KDMYD AKT+VRTVGGD E+F V + LHQGS LS FLF L
Sbjct: 368  DIIFECLASFS---------KDMYDGAKTRVRTVGGDSEHFPVEIGLHQGSVLSPFLFAL 418

Query: 3054 VIDQLTRHIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLES--IWIK*EKTEYME 2881
            V+D+LTR IQE V  CM+FADDI+LID+T   V  +LEVW+ TLES    +   KTEY+ 
Sbjct: 419  VMDELTRSIQETVPWCMLFADDIVLIDETRDRVNARLEVWRQTLESKGFRLSRTKTEYLG 478

Query: 2880 YKFSDVTQETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDVAH 2743
             KFSD   ET VEV++ AQ IPK   F+YL  +IQG+  ID+DV H
Sbjct: 479  CKFSDGLDETDVEVRLAAQVIPKKESFRYLGAVIQGSGDIDDDVTH 524


>gb|ABD28426.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 517

 Score =  269 bits (688), Expect(3) = 1e-98
 Identities = 135/285 (47%), Positives = 195/285 (68%), Gaps = 2/285 (0%)
 Frame = -2

Query: 3576 NYFNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRR 3397
            N FN I RT K+S   R ST++P+ KNKGDIQN  NYRGI L+SH MK+W+ +++ R+R+
Sbjct: 183  NLFNEIIRTKKMSDEWRRSTLIPIDKNKGDIQNCANYRGIKLMSHTMKLWERVIKRRLRK 242

Query: 3396 DV*ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRC 3217
            +  +++NQF  M G+ST+  I+L++R+ E+YR  K+DLH++F +LEK YD+VPRE+LW+ 
Sbjct: 243  ETLVTDNQFGFMLGRSTMEAIYLLQRVMERYRTDKKDLHLVFFDLEKGYDRVPREILWKA 302

Query: 3216 LESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLT 3037
            LE + V + YIRAIKDMY+ A T V+T  G  E F + + LHQGSTL+ +LF LV+D LT
Sbjct: 303  LEKKRVRIAYIRAIKDMYERASTSVKTQDGTTEDFPITIGLHQGSTLTPYLFTLVLDVLT 362

Query: 3036 RHIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLES--IWIK*EKTEYMEYKFSDV 2863
             HIQE    CM+FADD++L+ ++   V  +LE W+  LE+    +   KT+YME  FS  
Sbjct: 363  EHIQELAPRCMLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTKYMECNFSGR 422

Query: 2862 TQETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDVAHYLEQG 2728
               + +EVK+    IP+  RFKYL   +Q +  I+ DV+H ++ G
Sbjct: 423  RSRSTLEVKVGDHIIPQVTRFKYLGSFVQNDGEIEADVSHRIQAG 467



 Score = 84.3 bits (207), Expect(3) = 1e-98
 Identities = 69/219 (31%), Positives = 104/219 (47%), Gaps = 5/219 (2%)
 Frame = -1

Query: 4210 MWTRTSECIREVAREVLGASNGYSVDIEGTRGRMERSXXXXKPRKLSMQ--C*WDTLMRR 4037
            MW R +  I++VA+E LG S G+     G RG+           K+ ++  C  D    +
Sbjct: 1    MWERMAHEIKKVAKETLGESRGF-----GPRGKESWWWNDNVQSKVRIKRDCFKDWSRCK 55

Query: 4036 NKE---RYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQV 3866
            N E   +YK  +KE K  ++ A+T  FE LY+ L  + G++ +Y+L   RERK+ D+ QV
Sbjct: 56   NVETWDKYKIARKEAKKVVSEARTQAFEGLYQSLGTKEGEKSIYKLSKGRERKTRDLDQV 115

Query: 3865 KCIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIGISC*KN*SILRAV*TLIIIEA*RLR 3686
            KCIKD  G VL     +R R          + G       N +  R +    + E     
Sbjct: 116  KCIKDEEGRVL-----VRHR----------RGG------PNYNYYRRIQEHEVRE----- 149

Query: 3685 TLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
               A+ +M    A  PD I ++ WK+  ++GT WL  LF
Sbjct: 150  ---ALKRMGSDEAVGPDNIPIEVWKSLGDRGTVWLANLF 185



 Score = 58.9 bits (141), Expect(3) = 1e-98
 Identities = 27/49 (55%), Positives = 33/49 (67%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVH 2591
            +AG +KWR  S V CDKKV  +L  KFYR  V PAL+YG EC  +K+ H
Sbjct: 465  QAGWLKWRRASSVLCDKKVPLKLTGKFYRTAVRPALLYGTECWAVKSQH 513


>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
          Length = 377

 Score =  192 bits (488), Expect(2) = 2e-86
 Identities = 102/214 (47%), Positives = 146/214 (68%), Gaps = 2/214 (0%)
 Frame = -2

Query: 3363 MSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLESRSVHVTYI 3184
            M G+ST+  I+L+RR+ EQYR  ++DLH++FI+LEK YD+VPRE+LW+ LE + V V YI
Sbjct: 1    MPGRSTMEAIYLLRRVMEQYRMAQQDLHLIFIDLEKAYDRVPREILWKALEKKGVRVAYI 60

Query: 3183 RAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRHIQEEVLCCM 3004
            RAI+DMYD   T VRT GG+ + F + + LHQGSTLS +LF L++D LT  IQE    CM
Sbjct: 61   RAIQDMYDRVSTSVRTQGGESDDFPITIGLHQGSTLSPYLFTLILDVLTEQIQEIAPRCM 120

Query: 3003 IFADDIILIDKTCGGVFDKLEVWKTTLES--IWIK*EKTEYMEYKFSDVTQETYVEVKIE 2830
            +FADDI+L+ ++   + ++LE W+  LE+    +   K+EYME +F+   + +  EVKI 
Sbjct: 121  LFADDIVLLGESREELNERLETWRRALETHGFRLSRSKSEYMECQFNK-RRVSNSEVKIG 179

Query: 2829 AQAIPKGGRFKYLDFIIQGNR*IDEDVAHYLEQG 2728
               IP+  RFKYL  +IQ +  I+ DV H ++ G
Sbjct: 180  DHIIPQVTRFKYLGSVIQDDGEIEGDVNHRIQAG 213



 Score =  157 bits (398), Expect(2) = 2e-86
 Identities = 79/163 (48%), Positives = 107/163 (65%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG MKWR  S V CD KV  +LK KFYR  V P ++YG EC  +K+ H  K+ V+ MRM
Sbjct: 211  QAGWMKWRKASGVLCDAKVPIKLKGKFYRTAVRPTILYGTECWAVKSQHENKVGVAEMRM 270

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
            +RW+CG TR+D I+N+ IR++V V  + +KM E RLRWF HV+RR  D+ +RR +++   
Sbjct: 271  LRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHVERRPVDSVLRRVDQMERR 330

Query: 2377 GVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIRI 2249
               RGRGRPKK   EVI++D+    L   M LDR +WR  I +
Sbjct: 331  QTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKLIHV 373


>ref|XP_006010506.1| PREDICTED: uncharacterized protein LOC102366231 [Latimeria chalumnae]
          Length = 1500

 Score =  215 bits (548), Expect(3) = 2e-86
 Identities = 118/266 (44%), Positives = 170/266 (63%), Gaps = 2/266 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            + AI+   K+    R ST+VP++K KGD+Q+ NNYRGI L+SH MK+W+ ++E R+R+ V
Sbjct: 404  YRAIWEEGKMPTEWRESTLVPVFKRKGDVQDCNNYRGIALMSHAMKLWERIIEKRLRKLV 463

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             ISENQF    G+STI  I  ++ L E+Y++K++DLHM+F++LEK YD+VPR ++W C+ 
Sbjct: 464  QISENQFGFCQGRSTIDAIFALKILMEKYKEKRKDLHMVFVDLEKAYDRVPRGLIWWCMR 523

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
             R +   YIR +KDMY  +K  VR+  G    F V + + QGS LS FLF LV+D LT+ 
Sbjct: 524  KRGIPEVYIRLVKDMYQGSKIWVRSACGTTTSFPVKVGVRQGSALSPFLFILVLDTLTKD 583

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLESIWIK*EK--TEYMEYKFSDVTQ 2857
            IQ+E   CM+FADDI+L  ++   V   LE W   +E   +K  +  T YM  KFS+ + 
Sbjct: 584  IQKEPPWCMLFADDIMLCAESREEVEKDLERWVQCMEERGLKMSRMMTGYMVAKFSEGSD 643

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFII 2779
            E    +KI  + + +   FKYL  II
Sbjct: 644  E-MESMKIGEKKLRRTEEFKYLGSII 668



 Score = 78.2 bits (191), Expect(3) = 2e-86
 Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
 Frame = -1

Query: 2734 AG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMI 2555
            AG +KWR  S V CD  +   LK K Y+ V+  ALV+ AEC  I+    Q M V+ MRM+
Sbjct: 684  AGWVKWREVSGVICDNGIPAWLKGKVYKNVIRQALVFRAECWCIRKKEEQDMSVTEMRML 743

Query: 2554 RWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRW-FDHV 2432
            RW+ G  R D IKN+ IR +++VT V + MRE RL + F H+
Sbjct: 744  RWMLGMMRTDKIKNEEIRKRLKVTQVVE-MREKRLVYTFIHI 784



 Score = 77.8 bits (190), Expect(3) = 2e-86
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
 Frame = -1

Query: 4051 TLMRRNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMY 3872
            T  + + + Y   K++ K  +  AK + +  LY++L+   G++ +YR+   RERK  D  
Sbjct: 248  TRQKEDLDEYVIVKRQTKRVVAKAKVMAYVELYQKLDSREGEKMVYRIARARERKKRDFD 307

Query: 3871 QVKCIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKG----IGISC*KN*SILRAV*TLIII 3704
            QVK IKD  G+V+ ++  ++ RW+ YF KL  ++     +     +N + +  +    +I
Sbjct: 308  QVKVIKDSEGQVILDENKVKERWREYFEKLLNEENPREELPEGLPENHTAVEGITKEEVI 367

Query: 3703 EA*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
            +        A+ KM+ R AT PDE+ ++ +K   E G   LT+L+
Sbjct: 368  Q--------AMKKMKNRKATGPDEVPIETFKEMKEMGLVVLTRLY 404



 Score =  102 bits (253), Expect = 2e-18
 Identities = 61/180 (33%), Positives = 102/180 (56%)
 Frame = -3

Query: 4844 EVRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVL 4665
            EV RV+DRI+ ++L LG    + ++A+APQM   +++K  F E LD  ++ I + + I++
Sbjct: 7    EVTRVSDRIMTVRLALGFGVVSVVSAFAPQMGCGDKEKEEFQEGLDRELQRIARNDTIIV 66

Query: 4664 EGNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTY 4485
              + NG +     GY   H           G ++L   +A  L + ++ F+K+E++LVTY
Sbjct: 67   GVDLNGRVGRDRCGYEGNHGGQGYGERNTEGENVLRMAQAHNLAVVNTYFKKQERYLVTY 126

Query: 4484 RSVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKKRKLLMTGQR 4305
            RS   ++QIDY L++       K+CKVI  E L+  +RL+VMD + +  KK K  +  +R
Sbjct: 127  RSGNTQSQIDYILVKRQLLKRVKNCKVILGECLTGQHRLLVMDYKTECAKKNKAKLEMER 186


>emb|CDJ90320.1| RNA-directed DNA polymerase (reverse transcriptase) domain containing
            protein [Haemonchus contortus]
          Length = 1526

 Score =  176 bits (447), Expect(3) = 4e-85
 Identities = 100/275 (36%), Positives = 157/275 (57%)
 Frame = -2

Query: 3573 YFNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRD 3394
            + N +    +I    R ST+VP++K KGD  + +NYRGI L +H MK+++ +V+ R+R  
Sbjct: 573  FLNTVTAKGRIPDAWRRSTIVPIFKQKGDAMDCSNYRGIRLAAHTMKLYERLVDSRLREL 632

Query: 3393 V*ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCL 3214
            V ISE QF  M G+ST   I + R++  +YR+K+R  ++ F++LEK +D++PR+VLWR L
Sbjct: 633  VPISEKQFGFMPGRSTTDAIFITRQVMGKYREKRRPCYIAFLDLEKAFDRLPRQVLWRAL 692

Query: 3213 ESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTR 3034
              R V    I  +KDMYD + T +RT  G      V + +HQGS LS FLF L +D +T 
Sbjct: 693  RKRKVPEHLISLVKDMYDGSTTTIRTPHGQTGAIDVTVGVHQGSALSPFLFLLTMDVITE 752

Query: 3033 HIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLESIWIK*EKTEYMEYKFSDVTQE 2854
             + +  L  +++ADDI LI ++   + DKL+ W+  L    +   +    + KF    + 
Sbjct: 753  ELMDGPLKTILYADDIALIAESKDELQDKLQNWQRVLAESGL---RLNVKKAKFLSPEEG 809

Query: 2853 TYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
            T   V    +AI K   F+YL   +  +  +D+ V
Sbjct: 810  TESVVDGRGEAIEKVQDFRYLGSDLAADGSVDQAV 844



 Score =  120 bits (301), Expect(3) = 4e-85
 Identities = 56/139 (40%), Positives = 84/139 (60%)
 Frame = -1

Query: 2725 MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWI 2546
            MKWR ++ + CD +    LK K YR VV P ++YG+EC P+   H  ++  + MRM+RW 
Sbjct: 853  MKWRESTGILCDSRCSRTLKGKVYRTVVRPTMLYGSECWPVSKSHEGQLHSAEMRMLRWA 912

Query: 2545 CGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRR 2366
            CG+TR D  +N+ +R  ++   ++ K R  RLRWF HV RR +  P+R        G +R
Sbjct: 913  CGWTRLDRARNEDVRTAMQTAPIQMKTRGQRLRWFGHVLRRPQSHPIREAMEFEAQG-KR 971

Query: 2365 GRGRPKKNWGEVIRQDMTQ 2309
             RG PKK W +VI++D+ +
Sbjct: 972  PRGAPKKRWRDVIKKDLAE 990



 Score = 70.1 bits (170), Expect(3) = 4e-85
 Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 6/242 (2%)
 Frame = -1

Query: 4282 SQS*EVKEKLVAIGARSSSGDADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMER 4103
            S+   +KEK++  G  +  G     W+   E I   A+E LG + G      G RG  E 
Sbjct: 342  SEREHLKEKILEAGLPNPEGPIQQTWSNAVEVILRCAKETLGETRG------GFRGDKEA 395

Query: 4102 -----SXXXXKPRKLSMQC*WD-TLMRRNKERYKATKKEMKLDITTAKTITFEYLYKELE 3941
                        +K S    W  T    +   Y+ +K+  K  +  AK    + LY+ L+
Sbjct: 396  WFWNDGVQRVVRQKKSAYKRWQRTRAPEDLSAYRTSKRLAKAAVAKAKNTEMDALYEILD 455

Query: 3940 CEGGDRKLYRLDNTRERKSCDMYQVKCIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIG 3761
               G++ ++RL   R   + D+  VK +K+  G +LT        W+ YF  L  ++   
Sbjct: 456  SREGEKFVFRLAKARHLATQDIGVVKSVKNSEGAILTXXXXXXXXWEEYFDGLLNEE--- 512

Query: 3760 ISC*KN*SILRAV*TLIIIEA*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWL 3581
                +N S L A    I +         A+ KM+   AT PD + +  WK   E G +WL
Sbjct: 513  -FARQNSSQLEATAGPINLWT-ENEVRRAMGKMKVGKATGPDGVPIKAWKALGEHGVKWL 570

Query: 3580 TK 3575
            T+
Sbjct: 571  TR 572



 Score = 69.3 bits (168), Expect = 2e-08
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 6/244 (2%)
 Frame = -1

Query: 4282 SQS*EVKEKLVAIGARSSSGDADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRMER 4103
            S+   +KEK++  G  +  G     W+   E I   A+E LG + G      G RG  E 
Sbjct: 74   SEREHLKEKILEAGLPNPEGPIQQTWSNAVEVILRCAKETLGETRG------GFRGDKEA 127

Query: 4102 -----SXXXXKPRKLSMQC*WD-TLMRRNKERYKATKKEMKLDITTAKTITFEYLYKELE 3941
                        +K S    W  T    +   Y+ +K+  K  +  AK    + LY++L+
Sbjct: 128  WFWNDEVQRVVRQKKSAYKRWQKTRAPEDLAAYRTSKRLAKAAVAKAKNTEMDALYEKLD 187

Query: 3940 CEGGDRKLYRLDNTRERKSCDMYQVKCIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIG 3761
               G++ ++RL   R R + D+  VK +++  G +L +   +R RW+ YF  L  ++   
Sbjct: 188  SREGEKFVFRLAKARHRATRDIGVVKSVRNSEGAILRKPGEVRRRWEEYFDGLLNEE--- 244

Query: 3760 ISC*KN*SILRAV*TLIIIEA*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWL 3581
                +N S L A    I +         A+ KM+   AT PD + ++ WK   E G + +
Sbjct: 245  -FARQNSSQLEATAGPINLWT-ENEVRRAMGKMKVGKATGPDGVPIEAWKALGEYGVKCM 302

Query: 3580 TKLF 3569
             + +
Sbjct: 303  EEKY 306


>ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840703 [Brachypodium
            distachyon]
          Length = 567

 Score =  182 bits (462), Expect(2) = 1e-84
 Identities = 94/198 (47%), Positives = 133/198 (67%), Gaps = 3/198 (1%)
 Frame = -2

Query: 3312 EQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLESRSVHVTYIRAIKDMYDDAKTQVRTV 3133
            E+Y+++K+DLHM+FI+LEK YDK+PR V+W  LE   V   YI  IKDMYD+  T VRT 
Sbjct: 207  ERYKEQKKDLHMVFIDLEKAYDKIPRNVMWWALEKHKVPAKYITLIKDMYDNVVTSVRTS 266

Query: 3132 GGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRHIQEEVLCCMIFADDIILIDKTCGGVF 2953
             GD + F + + LHQGS LS +LF LV+D++TR IQ ++  CM+FADD++L+D +  GV 
Sbjct: 267  DGDTDDFPIKIGLHQGSALSPYLFDLVMDEVTRDIQGDIPWCMLFADDVVLVDDSRTGVN 326

Query: 2952 DKLEVWKTTLES--IWIK*EKTEYMEYKFSDVT-QETYVEVKIEAQAIPKGGRFKYLDFI 2782
             KLE+W+  LES    +   KTEYM+  FS  T +E   EV ++ Q +P+   F+YL  +
Sbjct: 327  RKLELWRQILESKGFRLSRTKTEYMKCGFSTTTPEEEEEEVSLDGQVVPQKDTFRYLGSM 386

Query: 2781 IQGNR*IDEDVAHYLEQG 2728
            +Q +  IDEDV H ++ G
Sbjct: 387  LQKDGDIDEDVNHRIKAG 404



 Score =  161 bits (408), Expect(2) = 1e-84
 Identities = 73/163 (44%), Positives = 109/163 (66%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG MKWR  S + CDK+V  +LK KFYR  + PA++YGAEC P K  HVQ++ V+ MRM
Sbjct: 402  KAGWMKWRQASGILCDKRVPQKLKGKFYRTAIRPAILYGAECWPTKRRHVQQLGVAEMRM 461

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
            +RW+CG+TR+D ++N  IRD+V V  + +K+ + RLRWF H++RR  DAPV         
Sbjct: 462  LRWMCGHTRRDRVRNDDIRDRVGVAPIAEKLVQHRLRWFGHIQRRPLDAPVHSGRLKRAG 521

Query: 2377 GVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIRI 2249
             V+RGRGRP   W E +++D+    +T+++ ++R  W+  I +
Sbjct: 522  NVKRGRGRPNLTWEESVKRDLKGWNITKELAMNRAAWKLAIHV 564


>gb|EHJ75084.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 472

 Score =  188 bits (478), Expect(3) = 4e-79
 Identities = 102/276 (36%), Positives = 166/276 (60%), Gaps = 2/276 (0%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV 3391
            FN +  T  +    R+S + P+YK +G +Q+  +YRG+ ++SH MK+++ M+++R+RR+ 
Sbjct: 32   FNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRLRREC 91

Query: 3390 *ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLE 3211
             +SE Q+    G  T+  I  +R L E YR+K+R LH+ F++L+K +D VPR+ +W  L 
Sbjct: 92   TVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALR 151

Query: 3210 SRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRH 3031
             + +   YI  I+DMY D+ + VRT  GD + F + + LHQGS LS FLF +V+D ++ +
Sbjct: 152  FKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDTVSAN 211

Query: 3030 IQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLESIWIK*E--KTEYMEYKFSDVTQ 2857
            IQ++    M++ADDI LID++   +  ++ +WK TLE+  +K    KTEYM     D   
Sbjct: 212  IQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMACGSPD--- 268

Query: 2856 ETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
                 + I  +   K  +F+YL  I+  +  ID DV
Sbjct: 269  --SCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDV 302



 Score =  130 bits (328), Expect(3) = 4e-79
 Identities = 65/157 (41%), Positives = 96/157 (61%)
 Frame = -1

Query: 2722 KWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWIC 2543
            KWR  + V CD+++  +LK   Y+ ++ P L+YG+EC P  + H Q++ V+ M+M+RW+C
Sbjct: 312  KWRDVTGVVCDRRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMC 371

Query: 2542 GYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRRG 2363
            G TR D I+N  IR  + V  V DK++E RLRW+ HV RR E+   + C  +++ G  R 
Sbjct: 372  GVTRADRIRNTFIRGSLGVRDVADKLQESRLRWYGHVARRPENYVGKICLDMSVPGA-RP 430

Query: 2362 RGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIR 2252
             GRP+K W + ++QDM    LT     DR  WRS  R
Sbjct: 431  PGRPRKRWLDTVKQDMRANGLTTADAKDRAKWRSLSR 467



 Score = 27.7 bits (60), Expect(3) = 4e-79
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 3664 MRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
            M+ R A  PD+I ++ WK+    G   LT LF
Sbjct: 1    MKNRKAVGPDDIPIEAWKSLGSLGVLILTDLF 32


>emb|CDJ80644.1| Endonuclease exonuclease phosphatase and RNA-directed DNA polymerase
            (reverse transcriptase) domain containing protein
            [Haemonchus contortus]
          Length = 816

 Score =  172 bits (436), Expect(4) = 1e-78
 Identities = 99/277 (35%), Positives = 161/277 (58%), Gaps = 2/277 (0%)
 Frame = -2

Query: 3573 YFNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRD 3394
            + N +    +I    R ST+VP++K KGD  + +NYRGI L +H MK+++ +V+ R+R  
Sbjct: 510  FLNTVTAEGRIPDAWRRSTIVPIFKQKGDAMDCSNYRGIRLTAHTMKLYERLVDSRLREL 569

Query: 3393 V*ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCL 3214
            V ISE QF  M  +ST   I + R++ E+YR+K+R  ++ F++LEK +D++PREVLW  L
Sbjct: 570  VPISEGQFGFMPERSTTDAIFIARQIMEKYREKRRPCYLAFLDLEKAFDRLPREVLWSAL 629

Query: 3213 ESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTR 3034
              R+V    I  +KDMYD + T +RT  G      V + +HQGS LS FLF L +D +T 
Sbjct: 630  RKRNVPEHLISLVKDMYDGSTTTIRTAHGQTGAIDVTVGVHQGSALSPFLFLLTMDVITE 689

Query: 3033 HIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTL--ESIWIK*EKTEYMEYKFSDVT 2860
             + +  L  +++ADDI LI ++   + D L+ W+  L    + +  +KT+++    S+  
Sbjct: 690  ELMDGPLKTILYADDIALIAESKEELQDNLQKWQKVLAENGLRLNVKKTKFLS---SEEG 746

Query: 2859 QETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
             E+  +     +AI K   F+YL   +  +  +D+ V
Sbjct: 747  MESITDG--YGEAIEKVQDFRYLGSDLAADGSVDQAV 781



 Score = 89.7 bits (221), Expect(4) = 1e-78
 Identities = 53/172 (30%), Positives = 88/172 (51%)
 Frame = -3

Query: 4841 VRRVNDRIIAMKLVLGGLTFNTINAYAPQMSLAEEDKRRFLEELDEVVRVILQTEKIVLE 4662
            V R++ RI+A+++      +  I+ YAPQ      +K  F   LDE +R + + + + + 
Sbjct: 93   VSRISSRIMAVRIETKEGYWTIISVYAPQAGCPAYEKDEFYLNLDEAIRSVPEGDYLTIA 152

Query: 4661 GNCNGHIETTTGGYYDVHDXXXXXXXXXXGMSLLDFVKAFELVIASSSFQKREKHLVTYR 4482
            G+ NGH+ +   G   VH           G  +LD   A +L + S+ F KR    VTY 
Sbjct: 153  GDMNGHVGSERRGLERVHGGRGIGVRNEEGERVLDLAMAHDLAVCSTFFAKRRSQKVTYS 212

Query: 4481 SVVAKTQIDYFLLR*GDRGVSKDCKVIPSENLST*YRLVVMDLEVKGNKKRK 4326
            S   +T+ID+ L+R       KD KV+P E L+T +R ++ D+ ++  KK +
Sbjct: 213  SGGNETEIDHVLVRRSSLKTVKDIKVLPGEELATQHRPLLADIAIELPKKSR 264



 Score = 81.6 bits (200), Expect(4) = 1e-78
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 6/237 (2%)
 Frame = -1

Query: 4267 VKEKLVAIGARSSSGDADSMWTRTSECIREVAREVLGASNGYSVDIEGTRGRME------ 4106
            +KEK++ +G     G     W+   + I   A+E LG + G      G RG  E      
Sbjct: 284  LKEKILEVGLPDPEGPIQQTWSNAVKVILGCAKETLGETRG------GLRGNKEAWFWND 337

Query: 4105 RSXXXXKPRKLSMQC*WDTLMRRNKERYKATKKEMKLDITTAKTITFEYLYKELECEGGD 3926
                  + +KL+ +    T    +   YK +K+  K  +  AK I  + LY++L+   G+
Sbjct: 338  EVQRVVREKKLAYKRWQKTRALEDLAAYKTSKRLAKAAVAKAKNIEMDALYEKLDSREGE 397

Query: 3925 RKLYRLDNTRERKSCDMYQVKCIKD*NGEVLTEKAYIRWRWQTYFHKL*MKKGIGISC*K 3746
            + ++RL   R R + D+  VK +++  G +L +   +R RW+ YF +L  ++       +
Sbjct: 398  KFVFRLAKARHRATQDIRVVKAVRNSEGAILRKPGEVRRRWKEYFDRLLNEE----FARE 453

Query: 3745 N*SILRAV*TLIIIEA*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTK 3575
            N S   A    I +         AI KM+   AT PD + ++ WK   E G +WLT+
Sbjct: 454  NSSHSEATAGPIKLWT-EDEVRKAIGKMKVGKATGPDGVPIEAWKALGEHGIKWLTR 509



 Score = 23.1 bits (48), Expect(4) = 1e-78
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 2749 RTLFRAG*MKWRITSKVFCDKKVLCRLK 2666
            ++   A  MKWR ++ + CD++    LK
Sbjct: 782  KSRINAAWMKWRESTGILCDRRCSRTLK 809


>emb|CDJ92648.1| RNA-directed DNA polymerase (reverse transcriptase) domain containing
            protein [Haemonchus contortus]
          Length = 479

 Score =  174 bits (442), Expect(3) = 2e-78
 Identities = 100/277 (36%), Positives = 163/277 (58%), Gaps = 2/277 (0%)
 Frame = -2

Query: 3573 YFNAIFRTAKISK**RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRD 3394
            + N +    +I    R ST+VP++K KGD    +NYRGI L +H MK+++ +V+ R+R  
Sbjct: 34   FLNTVTAEGRIPDAWRKSTIVPIFKQKGDAMECSNYRGIRLTTHTMKLYERLVDSRLREL 93

Query: 3393 V*ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCL 3214
            V IS+ QF  M  +ST   I + R++ E+YR+K+R  ++ F++LEK +D++PR+VLWR L
Sbjct: 94   VPISQKQFGFMPERSTTDAIFIARQVMEKYREKRRPCYIAFLDLEKAFDRLPRQVLWRAL 153

Query: 3213 ESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTR 3034
              R V    I  +KDMYD + T +RT  G      V + +HQGS LS FLF L +D +T 
Sbjct: 154  RKRKVPEHLISLVKDMYDGSTTTIRTPHGQTGAIDVTVGVHQGSALSPFLFLLTMDVITE 213

Query: 3033 HIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTL--ESIWIK*EKTEYMEYKFSDVT 2860
             + +  L  +++ADDI LI ++   + DKL+ W+  L    + +  +KT+++    S+  
Sbjct: 214  ELMDGPLKTILYADDIALIAESKDELQDKLQNWQRVLAESGLRLNVKKTKFLS---SEEG 270

Query: 2859 QETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
             E+ V+ +   +AI K   F+YL   +  +  +D+ V
Sbjct: 271  TESIVDGR--GEAIEKVQDFRYLGSDLAADGSVDQAV 305



 Score =  139 bits (349), Expect(3) = 2e-78
 Identities = 65/166 (39%), Positives = 101/166 (60%)
 Frame = -1

Query: 2749 RTLFRAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS 2570
            ++   A  MKWR ++ + CD++    LK K YR VV P ++YG+EC P+   H  ++  +
Sbjct: 306  KSRINAAWMKWRESTGILCDRRCSRTLKGKVYRTVVRPTMLYGSECWPVSKSHEGQLHSA 365

Query: 2569 *MRMIRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCER 2390
             MRM+RW CG+TR D ++N+ +R  ++   ++ KMRE RLRWF HV RR +  P+R    
Sbjct: 366  EMRMLRWACGWTRLDRVRNEDVRTAMQTAPIQLKMREQRLRWFGHVLRRPQSHPIREAME 425

Query: 2389 LTIAGVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIR 2252
                G +R RG PKK W +VI++D+ + ++T +  +DR  WR   R
Sbjct: 426  FEAQG-KRPRGAPKKRWRDVIKKDLAETKVTAEDAVDRMKWRRLTR 470



 Score = 31.2 bits (69), Expect(3) = 2e-78
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 3667 KMRKR*ATWPDEITLDFWKNAWEKGTEWLTK 3575
            KM+   AT PD + ++ WK   E G +WLT+
Sbjct: 3    KMKVGKATGPDGVPIEAWKALGEYGVKWLTR 33


>gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
          Length = 882

 Score =  167 bits (424), Expect(2) = 4e-78
 Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 2/192 (1%)
 Frame = -2

Query: 3297 KKRDLHMMFINLEKTYDKVPREVLWRCLESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFE 3118
            + +DLHM+FI+LEK YDK+PR V+W  LE   V   YI  IKDMYD+  T VRT   D +
Sbjct: 162  RNKDLHMVFIDLEKAYDKIPRNVMWWALEKHKVPAKYITLIKDMYDNVVTSVRTSDVDTD 221

Query: 3117 YFLVVMELHQGSTLSSFLFFLVIDQLTRHIQEEVLCCMIFADDIILIDKTCGGVFDKLEV 2938
             F + + LHQGS LS +LF LV+D++TR IQ ++  CM+FADD++L+D +  GV  KLE+
Sbjct: 222  DFPIKIGLHQGSALSPYLFALVMDEVTRDIQGDIPWCMLFADDVVLVDDSRTGVNRKLEL 281

Query: 2937 WKTTLES--IWIK*EKTEYMEYKFSDVTQETYVEVKIEAQAIPKGGRFKYLDFIIQGNR* 2764
            W+ TLES    +   KTEYM   FS  T+    EV ++ Q +P+   F YL  ++Q +  
Sbjct: 282  WRQTLESKGFRLSRTKTEYMMCGFS-TTRCEEEEVSLDGQVVPRKDTFWYLGSLLQEDGG 340

Query: 2763 IDEDVAHYLEQG 2728
            IDEDV H ++ G
Sbjct: 341  IDEDVNHRIKAG 352



 Score =  154 bits (390), Expect(2) = 4e-78
 Identities = 73/158 (46%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
 Frame = -1

Query: 2737 RAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRM 2558
            +AG MKWR  S + CDK+V  +LK KFYR VV PA++YGAEC P K  HVQ++ V+ M M
Sbjct: 350  KAGWMKWRQASGILCDKRVPQKLKGKFYRTVVRPAMLYGAECWPTKRRHVQQLDVAEMCM 409

Query: 2557 IRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIA 2378
            +R +CG+TRKD ++N  IRD+V V  +E+K+ + RLRWF H++ R  +APV         
Sbjct: 410  LRCMCGHTRKDRVRNDDIRDRVGVAPIEEKLVQHRLRWFGHIQHRPPEAPVHSGRLKRAE 469

Query: 2377 GVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDR-KIW 2267
             V+RGRGRP   W E +++D+    +T+++ +DR ++W
Sbjct: 470  NVKRGRGRPNLTWEESVKRDLKDWSITKELAMDRGRVW 507


>ref|XP_005753688.1| PREDICTED: RNA-directed DNA polymerase from mobile element
            jockey-like [Pundamilia nyererei]
          Length = 623

 Score =  159 bits (402), Expect(3) = 2e-75
 Identities = 95/278 (34%), Positives = 150/278 (53%), Gaps = 4/278 (1%)
 Frame = -2

Query: 3570 FNAIFRTAKISK**RWSTM--VPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRR 3397
            FN+I R   +     WST   VP++K KGD+   +NYR I LLSH MK+++W+++ RMR 
Sbjct: 177  FNSIIRDGTVPA--AWSTSITVPIWKGKGDVAERSNYRPIRLLSHTMKVFEWIIDARMRE 234

Query: 3396 DV*ISENQFDLMSGQSTI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRC 3217
             V ++ NQ   + G+ T   IH  R L E++R+K + + M F+NLEK +D VP +++W  
Sbjct: 235  IVNLTPNQCGFIRGRGTTDAIHAARLLLEKHREKSKTILMAFLNLEKAFDCVPHDLIWHS 294

Query: 3216 LESRSVHVTYIRAIKDMYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLT 3037
            L S  V   Y+   K +Y    + VR+  G    F + + +HQGS LS  LF L +D  T
Sbjct: 295  LRSHGVPEAYVNWTKLLYRQVSSVVRSPVGTSPPFNINVGVHQGSALSPLLFILCMDTAT 354

Query: 3036 RHIQEEVLCCMIFADDIILIDKTCGGVFDKLEVWKTTLESIWIK--*EKTEYMEYKFSDV 2863
              +Q      +++ADD+ L D++   +  + + WKT L    ++    KTEY+E      
Sbjct: 355  ADLQSPHPWTLLYADDVFLADESRIELQYQTQQWKTCLADFGLRLNTNKTEYLE-----A 409

Query: 2862 TQETYVEVKIEAQAIPKGGRFKYLDFIIQGNR*IDEDV 2749
              +T   + ++ + + K   FKYL  +I  +  I  DV
Sbjct: 410  GPQTDGTISVDGEDLAKVPHFKYLGSMISNDGVILLDV 447



 Score =  124 bits (311), Expect(3) = 2e-75
 Identities = 68/166 (40%), Positives = 95/166 (57%)
 Frame = -1

Query: 2749 RTLFRAG*MKWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS 2570
            R    A  MKWR  + V CD+++  RLK K Y+ VV P  +YG+EC P    H Q + V 
Sbjct: 448  RARINAAWMKWRQVTGVLCDRRMPNRLKSKIYKSVVRPVALYGSECWPATAKHEQALHVM 507

Query: 2569 *MRMIRWICGYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCER 2390
             MRM+RW  G TR D + N  +R ++ +  + DKM+E RLR + HV R  E++ VR   R
Sbjct: 508  EMRMLRWCLGLTRWDHVMNTDVRKRMGIAPITDKMQEARLRRYGHVVRSNENSVVRTALR 567

Query: 2389 LTIAGVRRGRGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIR 2252
            L+  G RR RGRPK+ W + I+ D+ +++      LDR  WR   R
Sbjct: 568  LSPQG-RRPRGRPKRRWMDRIKDDVKKIEADLTDALDRPKWRRLCR 612



 Score = 51.6 bits (122), Expect(3) = 2e-75
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
 Frame = -1

Query: 4030 ERYKATKKEMKLDITTAKTITFEYLYKELECEGGDRKLYRLDNTRERKSCDMYQVKCIKD 3851
            ++Y+A +   K  +  AK   ++ LY+EL+  GG  K+Y L ++R R + D+ QVK IKD
Sbjct: 28   QQYRALRSAAKKAVAAAKASHYDQLYEELDTPGGANKIYCLASSRHRATQDIGQVKHIKD 87

Query: 3850 *NGEVLT----------EKAYIRWRWQTYFHKL*MKKGIGISC*KN*SILRAV*TLIIIE 3701
             N + L           E+ ++R+          +++GI          +      I I+
Sbjct: 88   ANHQTLRDPPARHPQSLERVFLRY----------LQRGIPSPANPQCPPVPGPVPPITIK 137

Query: 3700 A*RLRTLGAICKMRKR*ATWPDEITLDFWKNAWEKGTEWLTKLF 3569
                    A+  M+   AT PD+I  + WK    +G   L  LF
Sbjct: 138  ----EVETAVKNMKNGKATGPDDIPAEVWKLLGRQGALVLASLF 177


>gb|EHJ71530.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 601

 Score =  185 bits (469), Expect(2) = 2e-74
 Identities = 99/262 (37%), Positives = 161/262 (61%), Gaps = 2/262 (0%)
 Frame = -2

Query: 3528 RWSTMVPLYKNKGDIQNYNNYRGINLLSHIMKIWKWMVEMRMRRDV*ISENQFDLMSGQS 3349
            R+S + P+YK +G +Q+  +YRG+ ++SH MK+++ M+++R+RR+  +SE Q+    G  
Sbjct: 6    RYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRLRRECTVSECQYGFQPGSG 65

Query: 3348 TI*DIHLVRRLFEQYRDKKRDLHMMFINLEKTYDKVPREVLWRCLESRSVHVTYIRAIKD 3169
            T+  I  +R L E YR+K+R LH+ F++L+K +D VPR+ +W  L  + +   YI  I+D
Sbjct: 66   TLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALRFKGIPEAYIDIIRD 125

Query: 3168 MYDDAKTQVRTVGGDFEYFLVVMELHQGSTLSSFLFFLVIDQLTRHIQEEVLCCMIFADD 2989
            MY D+ + VRT  GD + F + + LHQGS LS FLF +V+D ++ +IQ++    M++ADD
Sbjct: 126  MYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDTVSANIQDQPPWLMMYADD 185

Query: 2988 IILIDKTCGGVFDKLEVWKTTLESIWIK*E--KTEYMEYKFSDVTQETYVEVKIEAQAIP 2815
            I LID++   +  ++ +WK TLE+  +K    KTEYM     D        + I  +   
Sbjct: 186  IALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMACGSPD-----SCTIHIGPEPAV 240

Query: 2814 KGGRFKYLDFIIQGNR*IDEDV 2749
            K  +F+YL  I+  +  ID DV
Sbjct: 241  KSEKFRYLGSILHESGGIDHDV 262



 Score =  125 bits (313), Expect(2) = 2e-74
 Identities = 62/157 (39%), Positives = 95/157 (60%)
 Frame = -1

Query: 2722 KWRITSKVFCDKKVLCRLKHKFYRVVVGPALVYGAEC*PIKNVHVQKMKVS*MRMIRWIC 2543
            KWR  + V CD+++  +LK   Y+ ++ P L+YG+EC P  + H Q++ V+ M+M+RW+C
Sbjct: 272  KWRDVTGVVCDRRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMC 331

Query: 2542 GYTRKDIIKNKVIRDKVRVTFVEDKMREMRLRWFDHVKRRCEDAPVRRCERLTIAGVRRG 2363
            G TR D I+N  IR  + V  V DK++E RLRW+ HV RR E+   + C  +++ G  R 
Sbjct: 332  GVTRADRIRNTFIRGSLGVRDVADKLQESRLRWYGHVARRPENYVGKICLDMSVPGA-RP 390

Query: 2362 RGRPKKNWGEVIRQDMTQLQLTEDMTLDRKIWRSRIR 2252
             GRP+K W + ++QDM    LT     DR  +   +R
Sbjct: 391  PGRPRKRWLDTVKQDMRANGLTTADAKDRAKYERLLR 427