BLASTX nr result
ID: Atropa21_contig00002469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00002469
(1014 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 129 5e-33
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 146 1e-32
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 125 4e-29
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 125 4e-29
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 126 7e-29
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 124 3e-28
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 122 3e-28
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 122 4e-27
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 111 4e-27
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 108 2e-26
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 112 3e-26
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 124 4e-26
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 117 5e-24
ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296... 96 1e-23
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 112 4e-23
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas... 114 5e-23
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 108 8e-23
ref|XP_004954924.1| PREDICTED: uncharacterized protein LOC101756... 113 1e-22
ref|XP_004959141.1| PREDICTED: putative ribonuclease H protein A... 107 6e-21
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 107 1e-20
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 129 bits (325), Expect(2) = 5e-33
Identities = 72/188 (38%), Positives = 103/188 (54%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
F P RG+RQ D +S Y+F+L +++LC +I V W I K+SH FAD+L
Sbjct: 490 FVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLI 549
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
LF + I L RFC S QK++ KSKI FS N + + + L + I +
Sbjct: 550 LFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKE 609
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
KYLG PI KR F +++ ++ +L G + + L++AGR TL KA L+SIP +VM
Sbjct: 610 LGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMS 669
Query: 254 YIKLPSTT 231
I LP +T
Sbjct: 670 AILLPVST 677
Score = 39.3 bits (90), Expect(2) = 5e-33
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRLLK 52
R F+ +T KKK HL+ I KPK EG +G++ A ++ K + + WRLL+
Sbjct: 686 RTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQ 738
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 146 bits (368), Expect = 1e-32
Identities = 93/265 (35%), Positives = 149/265 (56%), Gaps = 3/265 (1%)
Frame = -2
Query: 788 PTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTLF 609
PTRG+RQ D +S Y++++ M++L +I+ EV NW + +N P IS+ FAD+L LF
Sbjct: 635 PTRGLRQGDPLSPYLYVICMERLAHLIDQEVTNGNWKPVKASRNGPPISNLAFADDLILF 694
Query: 608 FRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSFE 429
+ + + L+RFC S K+N KSKI FS+N + +D N L + + F
Sbjct: 695 SEASVEQAQVMKWCLDRFCEASGSKVNEDKSKIYFSANTHLDIRDAVCNTLAMEATADFG 754
Query: 428 KYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYI 249
KYLG P + R + ++ +++D +N KL G +TK L++AGR TL+++ +SIP Y MQ
Sbjct: 755 KYLGVPTINGRSSKREYQYLVDRINGKLAGWKTKTLSIAGRATLIQSAFSSIPYYTMQST 814
Query: 248 KLPSTTNKMINKIKGISYE*LLVLRRKCT**VRIPSLSLNLREN*VS-RRLK*KKTCTLV 72
KLP +T I++ K S+ ++ V ++S + +E + R ++ + LV
Sbjct: 815 KLPRSTCDDIDR-KSRSFLWGEQEGKRRVHLVAWENISKSKKEGGLGIRSMRQANSAFLV 873
Query: 71 WLGDS*KLD--SLWARVLIAKNCQN 3
LG + SLW+R+L AK C N
Sbjct: 874 KLGWRLLAEPSSLWSRILRAKYCDN 898
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 125 bits (313), Expect(2) = 4e-29
Identities = 72/194 (37%), Positives = 105/194 (54%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
FKP RG+RQ D ++ Y+F L M++L I VN W + + ISH FFAD+L
Sbjct: 631 FKPGRGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLM 690
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
LF ++ + + L+ F N S K+N++KS + SSN N K + L + + S
Sbjct: 691 LFGEASEHQAQIMFDCLDSFSNASGLKVNFSKSLLFCSSNVNAGLKRAIGSILQVPVAES 750
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
YLG P+ +R + F +ID + TKL + LNMAGR LV+A L ++P Y MQ
Sbjct: 751 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQ 810
Query: 254 YIKLPSTTNKMINK 213
+ LP +T I+K
Sbjct: 811 VMALPVSTCNEIDK 824
Score = 30.8 bits (68), Expect(2) = 4e-29
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRL 58
RNF+ + +K+H V I KP+ EG LG++ A + + T +AW++
Sbjct: 827 RNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQI 877
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 125 bits (313), Expect(2) = 4e-29
Identities = 72/194 (37%), Positives = 105/194 (54%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
FKP RG+RQ D ++ Y+F L M++L I VN W + + ISH FFAD+L
Sbjct: 631 FKPGRGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLM 690
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
LF ++ + + L+ F N S K+N++KS + SSN N K + L + + S
Sbjct: 691 LFGEASEHQAQIMFDCLDSFSNASGLKVNFSKSLLFCSSNVNAGLKRAIGSILQVPVAES 750
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
YLG P+ +R + F +ID + TKL + LNMAGR LV+A L ++P Y MQ
Sbjct: 751 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQ 810
Query: 254 YIKLPSTTNKMINK 213
+ LP +T I+K
Sbjct: 811 VMALPVSTCNEIDK 824
Score = 30.8 bits (68), Expect(2) = 4e-29
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRL 58
RNF+ + +K+H V I KP+ EG LG++ A + + T +AW++
Sbjct: 827 RNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQI 877
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 126 bits (316), Expect(2) = 7e-29
Identities = 75/200 (37%), Positives = 110/200 (55%)
Frame = -2
Query: 806 KSIFFKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFA 627
KS F P+RGIRQ D +S Y+F++ M++L II +V W + + P ISH FA
Sbjct: 53 KSESFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVEADYWKPMRAGRYGPPISHLLFA 112
Query: 626 DNLTLFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHIN 447
D+L LF + + + +++ L+ FC S QKIN K+++ FS N + ++ N
Sbjct: 113 DDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFN 172
Query: 446 NSPSFEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPN 267
S KYLG I R + F II+ + KL G + + L++AGR TL K ++SIP
Sbjct: 173 QVNSLGKYLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPY 232
Query: 266 YVMQYIKLPSTTNKMINKIK 207
Y MQY K+P T I KI+
Sbjct: 233 YHMQYAKIPKTICDEIEKIQ 252
Score = 28.9 bits (63), Expect(2) = 7e-29
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 210 QRNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRLLK 52
QR F+ ++ +K HLV D PK G LG ++ + + + W L+K
Sbjct: 252 QRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPHHMNEAFLMKMLWNLIK 305
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 124 bits (312), Expect(2) = 3e-28
Identities = 68/192 (35%), Positives = 106/192 (55%)
Frame = -2
Query: 806 KSIFFKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFA 627
K+ F P+RG+RQ D +S Y+F+L +++LC I+ V W I+ + P +SH FA
Sbjct: 78 KTESFIPSRGLRQGDPLSPYLFVLCLERLCHQIDLAVGTKEWKPISMSRGGPLLSHICFA 137
Query: 626 DNLTLFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHIN 447
D+L LF + + L +FC S QK++ KSKI FS N + + ++ I
Sbjct: 138 DDLILFAEASVAQIRVVRKVLEKFCIASGQKVSLEKSKIFFSQNVHRDLEKFISDESGIK 197
Query: 446 NSPSFEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPN 267
++ KYLG P+ KR F I+ ++++L G + + L++AGR TL K+ L+SIP
Sbjct: 198 STKELGKYLGMPVLQKRINKDTFGEILLRVSSRLAGWKGRMLSLAGRLTLTKSVLSSIPI 257
Query: 266 YVMQYIKLPSTT 231
+ M I LP T
Sbjct: 258 HTMSTIALPKAT 269
Score = 28.5 bits (62), Expect(2) = 3e-28
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKAEVKKN-MHTSLAWRLLK 52
++F+ +++ KKK HL+ + I K G LGI+ + + + WRLL+
Sbjct: 278 KSFVWGSSTEKKKQHLLAWNKIYCTKQAGGLGIRSSRAMNTALLAKIGWRLLQ 330
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 122 bits (305), Expect(2) = 3e-28
Identities = 71/194 (36%), Positives = 104/194 (53%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
FKP RG+RQ D + Y+F L M++L I VN W + + ISH FFAD+L
Sbjct: 1163 FKPGRGLRQGDPLVPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLM 1222
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
LF ++ + + L+ F + S K+N++KS + SSN N K + L + + S
Sbjct: 1223 LFGEASEHQAQIMFDCLDSFSDASGLKVNFSKSLLFCSSNVNAGLKRAIGSILQVPVAES 1282
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
YLG P+ +R + F +ID + TKL + LNMAGR LV+A L ++P Y MQ
Sbjct: 1283 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQ 1342
Query: 254 YIKLPSTTNKMINK 213
+ LP +T I+K
Sbjct: 1343 VMALPVSTCNEIDK 1356
Score = 30.8 bits (68), Expect(2) = 3e-28
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRL 58
RNF+ + +K+H V I KP+ EG LG++ A + + T +AW++
Sbjct: 1359 RNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQI 1409
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 122 bits (307), Expect(2) = 4e-27
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
FKPT G+RQ D +S Y+FIL M+KL I V +W I + P+ISH FAD++
Sbjct: 629 FKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVL 688
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNC-NPQDKDLYANRLHINNSP 438
LF + I N +RF S KIN +KS+ +SS N + +L A I ++
Sbjct: 689 LFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAIS-GIQSTT 747
Query: 437 SFEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVM 258
+ KYLGFP+ RP +DF FI++ + T+L + + LN GR TL + L++IP Y M
Sbjct: 748 TLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYM 807
Query: 257 QYIKLP 240
Q LP
Sbjct: 808 QINWLP 813
Score = 26.6 bits (57), Expect(2) = 4e-27
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA 100
RNF+ S K +HLV TI +PK G LGI+ A
Sbjct: 825 RNFL-WKGSNNKGIHLVNWKTITRPKSIGGLGIRSA 859
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 111 bits (277), Expect(2) = 4e-27
Identities = 61/165 (36%), Positives = 91/165 (55%)
Frame = -2
Query: 704 HEVNILNWFHITYCKNRPKISHFFFADNLTLFFRVNQKNYNTIVNTLNRFCNRSDQKINY 525
H + +W I+ + PK+SH FAD+L LF + I L RFC S QK++
Sbjct: 182 HSIARKDWKPISLSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSL 241
Query: 524 AKSKIIFSSNCNPQDKDLYANRLHINNSPSFEKYLGFPIFHKRPTNADF*FIIDNLNTKL 345
KSKI FS N + L ++ I+++ KYLG P+ +R F I++ L T+L
Sbjct: 242 EKSKIFFSENVSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRL 301
Query: 344 VG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYIKLPSTTNKMINKI 210
G + +FL++AGR TL KA L+SIP + M I LP +T ++K+
Sbjct: 302 AGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKV 346
Score = 38.1 bits (87), Expect(2) = 4e-27
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRLLK 52
R+F+ ++ ++K HL+ + KP+ EG LGI+KA ++ K + + + WRL++
Sbjct: 348 RSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQ 400
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 108 bits (270), Expect(2) = 2e-26
Identities = 60/175 (34%), Positives = 94/175 (53%)
Frame = -2
Query: 734 RMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTLFFRVNQKNYNTIVNTLNRF 555
R ++LC +I+ V + W I + PKISH FAD+L LF + I L F
Sbjct: 324 RKERLCHMIDRAVAVKEWKSIGLSQGGPKISHICFADDLILFAEASVSQIRVIRRILETF 383
Query: 554 CNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSFEKYLGFPIFHKRPTNADF* 375
C S QK++ KSKI FS N + + L + I ++ KYLG PI +R F
Sbjct: 384 CIASGQKVSLDKSKIFFSKNVSRDLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFG 443
Query: 374 FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYIKLPSTTNKMINKI 210
+++ ++++L G + + L+ AGR TL K+ L+ IP + M I LP +T + ++K+
Sbjct: 444 EVLERVSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKL 498
Score = 38.5 bits (88), Expect(2) = 2e-26
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKAE-VKKNMHTSLAWRLLKT*FPL 37
R F+ +++ KKK+HLV D + PK EG LGI+ ++ + K + + + WRL+ + L
Sbjct: 500 RVFLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSL 557
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 112 bits (279), Expect(2) = 3e-26
Identities = 67/199 (33%), Positives = 107/199 (53%)
Frame = -2
Query: 806 KSIFFKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFA 627
K+ F P RG+RQ D IS Y+F+L +++LC I V +W I+ + PK+SH FA
Sbjct: 438 KTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFA 497
Query: 626 DNLTLFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHIN 447
D+L LF + QK++ KSKI FS+N + + L I
Sbjct: 498 DDLILFAEASVA-----------------QKVSLEKSKIFFSNNVSRDLEGLITAETGIG 540
Query: 446 NSPSFEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPN 267
++ KYLG P+ KR F +++ ++++L G +++ L++AGR TL KA L SIP
Sbjct: 541 STRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPI 600
Query: 266 YVMQYIKLPSTTNKMINKI 210
+ M I LP++ + ++K+
Sbjct: 601 HTMSSILLPASLLEQLDKV 619
Score = 34.3 bits (77), Expect(2) = 3e-26
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQKA-EVKKNMHTSLAWRLL 55
RNF+ +T K+K HL+ + +PK G LG++ + ++ + + + WRLL
Sbjct: 621 RNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLL 672
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 124 bits (312), Expect = 4e-26
Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 5/247 (2%)
Frame = -2
Query: 938 FDRL*WSFIR-----IPFXXXXXXXXXXXXSYPAFALLYHPSLFW*IVGKSIFFKPTRGI 774
+D L W FIR F S PA +L+++ + + F P+RGI
Sbjct: 585 YDSLEWGFIRETLQGFNFPQSLIALIMDCISSPAISLIWNGEV-------TQSFSPSRGI 637
Query: 773 RQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTLFFRVNQ 594
RQ D +S YIF+L M++L +I+ + +W I + +SH F+AD++ LF + +
Sbjct: 638 RQGDPLSPYIFVLCMERLSMLISDRIRDGSWKPIKISSDLG-VSHIFYADDVFLFGQASV 696
Query: 593 KNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSFEKYLGF 414
+N I N L F N S ++N +KS IF NPQ + + A+ L + S SF KYLG
Sbjct: 697 RNGGVIQNVLEEFGNISGLRVNMSKSLAIFPPKMNPQRRRMLADFLTMKGSTSFGKYLGC 756
Query: 413 PIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYIKLPST 234
I + D+ +++ + + + G + K+LNMAGR TL+K+ ++S P Y MQ LP +
Sbjct: 757 NILPNKLRRGDYDGLLEKVKSAINGWQAKYLNMAGRCTLIKSVVSSFPVYGMQSSLLPVS 816
Query: 233 TNKMINK 213
I K
Sbjct: 817 VMNEIEK 823
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 117 bits (294), Expect = 5e-24
Identities = 67/183 (36%), Positives = 99/183 (54%)
Frame = -2
Query: 788 PTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTLF 609
P RG+RQ D +S Y+FI+ ++I +V ++ P+ISH FFAD+ LF
Sbjct: 633 PARGLRQGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLF 692
Query: 608 FRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSFE 429
R N++ IV+ LN++ S QKINY KS++ +S + KD N L++ E
Sbjct: 693 TRANRQECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHE 752
Query: 428 KYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYI 249
KYLG P R A F +ID + KL G + K L+ AG+ L+K+ + +IP Y+M
Sbjct: 753 KYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVY 812
Query: 248 KLP 240
K P
Sbjct: 813 KFP 815
>ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296313 [Fragaria vesca
subsp. vesca]
Length = 449
Score = 95.5 bits (236), Expect(2) = 1e-23
Identities = 52/171 (30%), Positives = 88/171 (51%)
Frame = -2
Query: 758 ISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTLFFRVNQKNYNT 579
+S YIF+L ++KL +I ++ W + ++ PKI H FFAD+L LF + + +
Sbjct: 208 LSSYIFVLCVEKLSHLIQSAIDYGYWKAVKASQSGPKILHLFFADDLILFVEASSQQTSL 267
Query: 578 IVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSFEKYLGFPIFHK 399
+ L+ FC S Q +++ KS + S N + L +N + KYLG P+ +
Sbjct: 268 LKTCLDNFCALSRQTVSFEKSLVFCSPNTSKSTASLISNVCGSPLTCDLGKYLGMPLIYD 327
Query: 398 RPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYIK 246
R + + D + +L ++K L+ GR TLV++ ++IP Y MQ K
Sbjct: 328 RVNKCTYAGLFDKVQKRLFSWKSKVLSFVGRLTLVQSVTSAIPMYAMQTAK 378
Score = 42.0 bits (97), Expect(2) = 1e-23
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 207 RNFI*VTTSFKKKMHLVG*DTIIKPKFEGELGIQK-AEVKKNMHTSLAWRLLK 52
R+FI KK++HLV DTI +PK+ G LG++K A++ + + + + WR+ +
Sbjct: 392 RDFILSDVENKKRVHLVNWDTICQPKYLGGLGVKKTADINQAILSKIGWRIFQ 444
>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1357
Score = 112 bits (280), Expect(2) = 4e-23
Identities = 64/183 (34%), Positives = 99/183 (54%)
Frame = -2
Query: 788 PTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTLF 609
P+RG+RQ D +S ++FIL +++ +V +N P+ISH FAD+ LF
Sbjct: 636 PSRGLRQGDPLSPFLFILVADAFSQMVKQKVVSKEIHGAKASRNGPEISHLLFADDSLLF 695
Query: 608 FRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSFE 429
R ++ TIV+ LN++ S QKINY KS++ FS + + K+ LH+ +
Sbjct: 696 TRATRQECLTIVDILNKYEAASGQKINYEKSEVSFSRGVSCEKKEELITLLHMRQVDRHQ 755
Query: 428 KYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQYI 249
KYLG P R F ++D + KL G + K L+ AG+ L+KA + ++P Y+M
Sbjct: 756 KYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEKLLSRAGKEVLIKAVIQALPTYLMGVY 815
Query: 248 KLP 240
KLP
Sbjct: 816 KLP 818
Score = 23.5 bits (49), Expect(2) = 4e-23
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 177 KKKMHLVG*DTIIKPKFEGELGIQKAEVKKN-MHTSLAWRLL 55
++KMH + + + KPK G +G + V + + WRLL
Sbjct: 840 ERKMHWLSWEKMCKPKCMGGMGFKDLAVFNDALLGKQVWRLL 881
>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 653
Score = 114 bits (286), Expect = 5e-23
Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 2/195 (1%)
Frame = -2
Query: 788 PTRGIRQRDLISLYIFILRMKKLCRIINHEV--NILNWFHITYCKNRPKISHFFFADNLT 615
P RG+RQ D +S Y+FIL + + +I NIL+ + CK P +SH FAD+
Sbjct: 221 PGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKV--CKRAPTVSHLLFADDSF 278
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
LFFR N+ + + L+ + N SDQ IN KS+I FS N K+ +N L ++
Sbjct: 279 LFFRANENETRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIG 338
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
KYLG P R + F +I D + ++ G +K L+ AG+ L+K+ +IP+Y M
Sbjct: 339 IRKYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMS 398
Query: 254 YIKLPSTTNKMINKI 210
LP + I K+
Sbjct: 399 VFLLPHSIADDIEKM 413
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 108 bits (269), Expect(2) = 8e-23
Identities = 62/195 (31%), Positives = 97/195 (49%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
F P+RG+RQ D +S YIF+L +++L I ++ +W I + +SH FF D+L
Sbjct: 57 FSPSRGVRQGDPLSPYIFVLCVERLSHGIYQSIHQDHWKPIRLSRLGTPLSHLFFTDDLL 116
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
LF I + L FC S K+N +K+ + FS N L +
Sbjct: 117 LFAEATSGQAQCINSVLGDFCLSSGTKVNQSKTHVYFSKNVPDAVATRIWRDLGYTVTKD 176
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
KYLG P+ H R + + I+D + KL+G L++AGR TL ++ L ++P Y MQ
Sbjct: 177 LGKYLGMPLLHSRVSQQTYQGILDKTDQKLLGWAASQLSLAGRITLTQSVLQAVPIYAMQ 236
Query: 254 YIKLPSTTNKMINKI 210
LP + +++I
Sbjct: 237 TTNLPGSIKTKLDQI 251
Score = 26.6 bits (57), Expect(2) = 8e-23
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 174 KKMHLVG*DTIIKPKFEGELGIQKAEV-KKNMHTSLAWRLL 55
+KM LV I +PK G LG ++ ++ + + +AW L+
Sbjct: 264 RKMSLVSWHNICQPKMAGGLGFKRLDIMNEALLLKVAWHLI 304
>ref|XP_004954924.1| PREDICTED: uncharacterized protein LOC101756955 [Setaria italica]
Length = 1203
Score = 113 bits (282), Expect = 1e-22
Identities = 62/196 (31%), Positives = 104/196 (53%)
Frame = -2
Query: 806 KSIFFKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFA 627
+S F P+RG+RQ D +S Y+F++ + L +I + + C++ P ISH FA
Sbjct: 489 ESEIFSPSRGLRQGDPLSPYLFLMVAEGLSCMIRKAEERGDLIGVKVCRDAPTISHLLFA 548
Query: 626 DNLTLFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHIN 447
D+ + + ++ N + + + LNR+C S QKI+ AKS I FS+N K L+I
Sbjct: 549 DDSLILMQADKNNADCLASILNRYCASSGQKISEAKSSIYFSANTEADQKTEVCQILNIM 608
Query: 446 NSPSFEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPN 267
+KYLG P + F +ID +NT++ G + K L++ G+ L+K+ ++P
Sbjct: 609 TESLNDKYLGLPALVGLDRSNCFRHLIDRVNTRINGWKEKTLSLGGKEILIKSIAQAVPV 668
Query: 266 YVMQYIKLPSTTNKMI 219
Y M ++P + K I
Sbjct: 669 YAMMVFQIPKSICKGI 684
>ref|XP_004959141.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Setaria
italica]
Length = 950
Score = 107 bits (268), Expect = 6e-21
Identities = 60/192 (31%), Positives = 99/192 (51%)
Frame = -2
Query: 791 KPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLTL 612
KPTRG+RQ D +S Y+F+L + ++N I+ C N P I+H FAD+ L
Sbjct: 203 KPTRGLRQGDPLSPYLFLLCAEGFSSMLNVAEEAGRLQGISICANAPSITHLLFADDALL 262
Query: 611 FFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPSF 432
+ NQ+N N + L + S Q IN KS ++FS N + D + + L +
Sbjct: 263 LLKANQENANYLQYVLQVYEACSGQMINKDKSSVLFSKNTSQTSGDQFLSTLGLAQGVRT 322
Query: 431 EKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQY 252
++YLG P++ R F ++ D + ++ G + K L+ AG+ TL+KA +IP+Y M
Sbjct: 323 DRYLGLPVYMGRSRTQTFAYLKDRVWKRIHGWKEKLLSKAGKETLIKAVAQAIPSYAMAC 382
Query: 251 IKLPSTTNKMIN 216
+ + + I+
Sbjct: 383 FDITKSVSDEIS 394
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 107 bits (266), Expect = 1e-20
Identities = 68/195 (34%), Positives = 96/195 (49%)
Frame = -2
Query: 794 FKPTRGIRQRDLISLYIFILRMKKLCRIINHEVNILNWFHITYCKNRPKISHFFFADNLT 615
F P+RG+RQ D +S ++F+ L R+IN +T N +SH FFAD+
Sbjct: 1236 FLPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDSL 1295
Query: 614 LFFRVNQKNYNTIVNTLNRFCNRSDQKINYAKSKIIFSSNCNPQDKDLYANRLHINNSPS 435
F R +N T+ + L+ +C S Q IN KS I FS N P+ L ++ + I
Sbjct: 1296 FFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSD 1355
Query: 434 FEKYLGFPIFHKRPTNADF*FIIDNLNTKLVG*RTKFLNMAGRTTLVKAFLNSIPNYVMQ 255
YLG P F R FI D++ K+ G + L+ AG+ L+KA +IP Y M
Sbjct: 1356 PGTYLGLPTFWHRSKKKALGFIKDSILRKVKGWKQATLSQAGKEVLIKAVATAIPAYPMG 1415
Query: 254 YIKLPSTTNKMINKI 210
K PST K +N I
Sbjct: 1416 CFKFPSTLCKELNGI 1430