BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00001298
         (3098 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...  1826   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1826   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1806   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1446   0.0  
emb|CBI16226.3| unnamed protein product [Vitis vinifera]             1441   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1381   0.0  
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]         1377   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1376   0.0  
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise...  1340   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1323   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1319   0.0  
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps...  1301   0.0  
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr...  1299   0.0  
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...  1299   0.0  
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...  1289   0.0  
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...  1289   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...  1288   0.0  
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus...  1282   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...  1281   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...  1278   0.0  

>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score = 1826 bits (4729), Expect = 0.0
 Identities = 900/973 (92%), Positives = 923/973 (94%)
 Frame = +2

Query: 116  MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPN 295
            M+R Q ++QVTKQPYIEDVGPRKIKSI+FSLFSESEILK AEVEV+ G YYESTKKP+ N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 296  GLLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXX 475
            GLLDP MGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVD          
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 476  XXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVK 655
                 DKERRD LK MRNPRTE+LKKSEL KKVV RCN M  GQKT TCSKCGYMNGMVK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 656  KVQLKIIHERGVRFLDEFIGAISHKRELRASVSVPPEIDPKTVYSLFKNMSDEDCELLYL 835
            K+QLKI HE+G R LDE   AIS KRELRASVSVPPE+DPK VYSLFKNMSDEDCELLYL
Sbjct: 181  KLQLKITHEQGNRILDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYL 240

Query: 836  SDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSPN 1015
            SDRPEKLLVTS+PVPP +IRPSVFVDGGTQSNENDITERLKRIIQ NASLHQEMSD+SP 
Sbjct: 241  SDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPV 300

Query: 1016 NKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVEY 1195
             KSL LWIDLQMEVAQYINSDVRGVPLH+Q+QRPLSGFTQRLKGKQGRFRGNLSGKRVEY
Sbjct: 301  -KSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEY 359

Query: 1196 TGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 1375
            TGRTVISPDPNLKITEVAIPILMA+ILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH
Sbjct: 360  TGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 419

Query: 1376 PDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 1555
            PDG+EISLMF+SRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 420  PDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 479

Query: 1556 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 1735
            TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD
Sbjct: 480  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 539

Query: 1736 FLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLRP 1915
            FLTSSFLITRKDTFY+RASFSLICSYMGDAMDP DLP+PAFIKPVELWTGKQLF +LLRP
Sbjct: 540  FLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRP 599

Query: 1916 YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 2095
            YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL
Sbjct: 600  YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 659

Query: 2096 LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKCEDC 2275
            LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGE LVKQKQ EIHRNYKKCEDC
Sbjct: 660  LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDC 719

Query: 2276 IQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKG 2455
            I QFN GKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL WRNSPLIMSQCGSKG
Sbjct: 720  ITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKG 779

Query: 2456 SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 2635
            SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF
Sbjct: 780  SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 839

Query: 2636 FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 2815
            FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM
Sbjct: 840  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 899

Query: 2816 DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMSPEGGCSE 2995
            DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDM+PEGGCSE
Sbjct: 900  DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSE 959

Query: 2996 AFRASLSDFLIKN 3034
            AFR+SLSDFLIKN
Sbjct: 960  AFRSSLSDFLIKN 972


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1826 bits (4729), Expect = 0.0
 Identities = 900/973 (92%), Positives = 923/973 (94%)
 Frame = +2

Query: 116  MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPN 295
            M+R Q ++QVTKQPYIEDVGPRKIKSI+FSLFSESEILK AEVEV+ G YYESTKKP+ N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 296  GLLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXX 475
            GLLDP MGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVD          
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 476  XXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVK 655
                 DKERRD LK MRNPRTE+LKKSEL KKVV RCN M  GQKT TCSKCGYMNGMVK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 656  KVQLKIIHERGVRFLDEFIGAISHKRELRASVSVPPEIDPKTVYSLFKNMSDEDCELLYL 835
            K+QLKI HE+G R LDE   AIS KRELRASVSVPPE+DPK VYSLFKNMSDEDCELLYL
Sbjct: 181  KLQLKITHEQGNRILDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYL 240

Query: 836  SDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSPN 1015
            SDRPEKLLVTS+PVPP +IRPSVFVDGGTQSNENDITERLKRIIQ NASLHQEMSD+SP 
Sbjct: 241  SDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPV 300

Query: 1016 NKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVEY 1195
             KSL LWIDLQMEVAQYINSDVRGVPLH+Q+QRPLSGFTQRLKGKQGRFRGNLSGKRVEY
Sbjct: 301  -KSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEY 359

Query: 1196 TGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 1375
            TGRTVISPDPNLKITEVAIPILMA+ILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH
Sbjct: 360  TGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 419

Query: 1376 PDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 1555
            PDG+EISLMF+SRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 420  PDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 479

Query: 1556 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 1735
            TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD
Sbjct: 480  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 539

Query: 1736 FLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLRP 1915
            FLTSSFLITRKDTFY+RASFSLICSYMGDAMDP DLP+PAFIKPVELWTGKQLF +LLRP
Sbjct: 540  FLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRP 599

Query: 1916 YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 2095
            YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL
Sbjct: 600  YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 659

Query: 2096 LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKCEDC 2275
            LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGE LVKQKQ EIHRNYKKCEDC
Sbjct: 660  LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDC 719

Query: 2276 IQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKG 2455
            I QFN GKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL WRNSPLIMSQCGSKG
Sbjct: 720  ITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKG 779

Query: 2456 SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 2635
            SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF
Sbjct: 780  SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 839

Query: 2636 FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 2815
            FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM
Sbjct: 840  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 899

Query: 2816 DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMSPEGGCSE 2995
            DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDM+PEGGCSE
Sbjct: 900  DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSE 959

Query: 2996 AFRASLSDFLIKN 3034
            AFR+SLSDFLIKN
Sbjct: 960  AFRSSLSDFLIKN 972


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1806 bits (4678), Expect = 0.0
 Identities = 893/973 (91%), Positives = 917/973 (94%)
 Frame = +2

Query: 116  MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPN 295
            M R QE++QVTKQPYIEDVGPRKIKSI+FSLFSESEILK AEVEV+ G YYESTKKP+ N
Sbjct: 1    MNRAQESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQN 60

Query: 296  GLLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXX 475
            GLLDP MGPPNK+GCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVD          
Sbjct: 61   GLLDPRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 476  XXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVK 655
                 DKERRD LK MRNPRTE+LKKSEL K+VV RCN M  GQKT TCSKCGYMNGMVK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 656  KVQLKIIHERGVRFLDEFIGAISHKRELRASVSVPPEIDPKTVYSLFKNMSDEDCELLYL 835
            K+QLKI HE+G R LDE   AIS KRELRASVSVPPEIDPK VYSLFKNMSDEDCELLYL
Sbjct: 181  KLQLKITHEQGNRILDEINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELLYL 240

Query: 836  SDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSPN 1015
            SDRPEKLLVTS+PVPP +IRPSVFVDGGTQSNENDITERLKRIIQ NASLHQEMSD+SP 
Sbjct: 241  SDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPV 300

Query: 1016 NKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVEY 1195
             KSL  WIDLQMEVAQYINSDVRGVPL +Q  RPLSGFTQRLKGKQGRFRGNLSGKRVEY
Sbjct: 301  -KSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVEY 359

Query: 1196 TGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 1375
            TGRTVISPDPNLKITEVAIPILMA+ILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH
Sbjct: 360  TGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 419

Query: 1376 PDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 1555
            PDG E+SLMFSSRKR+ADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 420  PDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 479

Query: 1556 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 1735
            TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD
Sbjct: 480  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 539

Query: 1736 FLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLRP 1915
            FLTSSFLITRKDTFY+RASFSLICSYMGDAMDP DLP+PAFIKPVELWTGKQLF VLLRP
Sbjct: 540  FLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRP 599

Query: 1916 YSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 2095
            YSKMRVYVNLT+TEKSYSGKGETMC SDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL
Sbjct: 600  YSKMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 659

Query: 2096 LRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKCEDC 2275
            LRDY+SHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGE LVKQKQ EIHRNYKKCEDC
Sbjct: 660  LRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDC 719

Query: 2276 IQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKG 2455
            I QFN GKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL WRNSPLIMSQCGSKG
Sbjct: 720  ITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKG 779

Query: 2456 SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 2635
            SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF
Sbjct: 780  SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 839

Query: 2636 FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 2815
            FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM
Sbjct: 840  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 899

Query: 2816 DPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMSPEGGCSE 2995
            DPS+MEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDM+PEGGCSE
Sbjct: 900  DPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSE 959

Query: 2996 AFRASLSDFLIKN 3034
            AFRASLSDFLIK+
Sbjct: 960  AFRASLSDFLIKS 972


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 1446 bits (3742), Expect = 0.0
 Identities = 721/973 (74%), Positives = 814/973 (83%), Gaps = 7/973 (0%)
 Frame = +2

Query: 128  QETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLLD 307
            ++ IQ TK+PYIEDVGPRKI+SI+F+LFSESEI K AEV+V RG YY++ +KP+ NGLLD
Sbjct: 2    KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61

Query: 308  PHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXXX 487
            P MGP NKNG C TC GNFR+CPGH GYL LALPVYNVGYL T+VD              
Sbjct: 62   PRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLL 121

Query: 488  HDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ- 664
             +K  +D+LK MR+ + E LKK+EL KK+V +C  M S +K V CS+CGYMNG+VKK   
Sbjct: 122  DEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVS 181

Query: 665  -LKIIHERGV---RFLDEFIGAISHKRELRASVSVPPEIDPKTVYSLFKNMSDEDCELLY 832
             L IIH+R       L+E   AISH +E +AS SV   ++P  V SLFK M DEDC+LL 
Sbjct: 182  VLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLN 241

Query: 833  LSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSP 1012
            L++RPEKL++T++ VPP +IRPSVF+DGGTQSNEND+TERLKRIIQ NASLHQE+ DT  
Sbjct: 242  LAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGS 301

Query: 1013 NNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVE 1192
             +K L  W  LQ+EVAQYINSDVRGVPL +Q+ RPLSGF QRLKGKQGRFRGNLSGKRVE
Sbjct: 302  TSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVE 361

Query: 1193 YTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 1372
            YTGRTVISPDPNLKITEVAIPILMA+IL+YPERVS HNIEKLRQC+ NGP KYPGAK IR
Sbjct: 362  YTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIR 421

Query: 1373 HPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 1552
            +PDG+  SLMFS RKR ADELK+GYIV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPW
Sbjct: 422  YPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 481

Query: 1553 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 1732
            RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQ
Sbjct: 482  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 541

Query: 1733 DFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLR 1912
            DFLTSSFLITRKDTFYDRA+FSL+CSYMGD MD  DLPTPA IKPVELWTGKQLF VLLR
Sbjct: 542  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLR 601

Query: 1913 PYSKMRVYVNLTVTEKSYSGK--GETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLY 2086
            P++ +RVY+NLTV EK+Y+ +   ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGL+
Sbjct: 602  PHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLF 661

Query: 2087 SVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKC 2266
            SVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PG  L  QK + I   Y+ C
Sbjct: 662  SVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENC 721

Query: 2267 EDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCG 2446
             + IQQ+N GKL +QPGC+AAQTLEAE+T  LNK+R+    +CM+ LHWRNSPLIMSQCG
Sbjct: 722  HELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCG 781

Query: 2447 SKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSA 2626
            SKGSPINISQMIACVGQQSVGGRRAPDGFIDR+LPHFP KSK P AKGFVA SF+ GL+A
Sbjct: 782  SKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTA 841

Query: 2627 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGD 2806
            TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL++ YD TVRNA+  IVQF+YGD
Sbjct: 842  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGD 901

Query: 2807 DGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMSPEGG 2986
            DGMDP++ME K G PLNF+RLF+KVKATCP G   SLS  +I E V +RL  H+ S E G
Sbjct: 902  DGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAE-G 959

Query: 2987 CSEAFRASLSDFL 3025
            CS+AF+ +LS FL
Sbjct: 960  CSDAFKTNLSGFL 972


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score = 1441 bits (3731), Expect = 0.0
 Identities = 719/973 (73%), Positives = 813/973 (83%), Gaps = 7/973 (0%)
 Frame = +2

Query: 128  QETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLLD 307
            ++ IQ TK+PYIEDVGPRKI+SI+F+LFSESEI K AEV+V RG YY++ +KP+ NGLLD
Sbjct: 2    KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61

Query: 308  PHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXXX 487
            P MGP NKNG C TC GNFR+CPGH GYL LALPVYNVGYL T+VD              
Sbjct: 62   PRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLL 121

Query: 488  HDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ- 664
             +K  +D+LK MR+ + E LKK+EL KK+V +C  M S +K V CS+CGYMNG+VKK   
Sbjct: 122  DEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVS 181

Query: 665  -LKIIHERGV---RFLDEFIGAISHKRELRASVSVPPEIDPKTVYSLFKNMSDEDCELLY 832
             L IIH+R       L+E   AISH +E +AS SV   ++P  V SLFK M DEDC+LL 
Sbjct: 182  VLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLN 241

Query: 833  LSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSP 1012
            L++RPEKL++T++ VPP +IRPSVF+DGGTQSNEND+TERLKRIIQ NASLHQE+ DT  
Sbjct: 242  LAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGS 301

Query: 1013 NNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVE 1192
             +K L  W  LQ+EVAQYINSDVRGVPL +Q+ RPLSGF QRLKGKQGRFRGNLSGKRVE
Sbjct: 302  TSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVE 361

Query: 1193 YTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 1372
            YTGRTVISPDPNLKITEVAIPILMA+IL+YPERVS HNIEKLRQC+ NGP KYPGAK IR
Sbjct: 362  YTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIR 421

Query: 1373 HPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 1552
            +PDG+  SLMFS RKR ADELK+GYIV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPW
Sbjct: 422  YPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 481

Query: 1553 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 1732
            RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQ
Sbjct: 482  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 541

Query: 1733 DFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLR 1912
            DFLTSSFLITRKDTFYDRA+FSL+CSYMGD MD  DLPTPA IK +ELWTGKQLF VLLR
Sbjct: 542  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLR 601

Query: 1913 PYSKMRVYVNLTVTEKSYSGK--GETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLY 2086
            P++ +RVY+NLTV EK+Y+ +   ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGL+
Sbjct: 602  PHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLF 661

Query: 2087 SVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKC 2266
            SVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PG  L  QK + I   Y+ C
Sbjct: 662  SVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENC 721

Query: 2267 EDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCG 2446
             + IQQ+N GKL +QPGC+AAQTLEAE+T  LNK+R+    +CM+ LHWRNSPLIMSQCG
Sbjct: 722  HELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCG 781

Query: 2447 SKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSA 2626
            SKGSPINISQMIACVGQQSVGGRRAPDGFIDR+LPHFP KSK P AKGFVA SF+ GL+A
Sbjct: 782  SKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTA 841

Query: 2627 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGD 2806
            TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL++ YD TVRNA+  IVQF+YGD
Sbjct: 842  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGD 901

Query: 2807 DGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMSPEGG 2986
            DGMDP++ME K G PLNF+RLF+KVKATCP G   SLS  +I E V +RL  H+ S E G
Sbjct: 902  DGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAE-G 959

Query: 2987 CSEAFRASLSDFL 3025
            CS+AF+ +LS FL
Sbjct: 960  CSDAFKTNLSGFL 972


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1381 bits (3574), Expect = 0.0
 Identities = 693/985 (70%), Positives = 798/985 (81%), Gaps = 16/985 (1%)
 Frame = +2

Query: 116  MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPN 295
            +++  ++I  TKQPYIEDVGPRKI+SIQFS+ S+SEI+K AEV+V++G YY S + P+  
Sbjct: 5    LQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEG 64

Query: 296  GLLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXX 475
            GLLDP MGP NK+  C TCHG F  CPGHYGYL LALPVYNVGYL T++D          
Sbjct: 65   GLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCS 124

Query: 476  XXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVK 655
                 +K  +D+LK MRNP+ E L+K++L K +V +C+TM S  K V C +CGY+NGMVK
Sbjct: 125  RLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS--KAVKCPRCGYINGMVK 182

Query: 656  KVQ--LKIIHERG--VRFLDEFIGAISHKRELRASVSVPPEI-DPKTVYSLFKNMSDEDC 820
            K    L IIH+R      L EF  AI+H +E +A+V+V   I +P  V  LFK M+D DC
Sbjct: 183  KAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDC 242

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            E+LYLS+RPEKL++T++ VPP +IRPSV +DG +QSNENDITERLKRIIQTNASL QE+ 
Sbjct: 243  EVLYLSERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELV 301

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
            + +   KSL  W  LQ+EVAQYINSDVRGVP  +Q  RPLSGF QRLKGKQGRFRGNLSG
Sbjct: 302  EANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSG 361

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVEYTGRTVISPDPNLKITEVAIPI MARILTYPERVS HNIEKLRQC++NGP+KYPGA
Sbjct: 362  KRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGA 421

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + IR+PDGT   L    R + A ELK G IVDRHLEDGD+VLFNRQPSLHRMSIM HRAR
Sbjct: 422  RMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRAR 481

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL+LMGVQNNLCTPK+GEILV
Sbjct: 482  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILV 541

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFLITRKDTFYDRA+FSL+C YMGD MD  DLPTPA +KPVELWTGKQLF 
Sbjct: 542  ASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFS 601

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYSGK-----------GETMCPSDGFVYFRNSELISGQLG 2047
            VL+RP++ MRVYVNLTV EK+YS K            ETMCP+DGFVYFRNSELISGQLG
Sbjct: 602  VLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLG 661

Query: 2048 KATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVK 2227
            KATLGNGNKDGLYSVLLRDY +HA + CMNRLAKLSARWIGNHGFSIGIDDV P + L  
Sbjct: 662  KATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSD 721

Query: 2228 QKQEEIHRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL 2407
            +K + I  NY+ C   I+++N GKL ++PGCDAAQTLEA +T  LN++R+D GK CM +L
Sbjct: 722  KKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSL 781

Query: 2408 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAK 2587
             WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHFP K+K PAAK
Sbjct: 782  PWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAK 841

Query: 2588 GFVAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVR 2767
            GFVA+SF+ GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL++ YD++VR
Sbjct: 842  GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVR 901

Query: 2768 NASACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVN 2947
            NA  CIVQF+YGDDGMDP+ ME K G PLNF RL MKVKATCPP G++ LS  ++ EIV 
Sbjct: 902  NAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVE 961

Query: 2948 ERLSYHDMSPEGGCSEAFRASLSDF 3022
            ++L+ +    +  CSEAF  SL  F
Sbjct: 962  KQLAAYG---KESCSEAFLNSLRKF 983


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score = 1377 bits (3563), Expect = 0.0
 Identities = 696/977 (71%), Positives = 788/977 (80%), Gaps = 17/977 (1%)
 Frame = +2

Query: 146  TKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLLDPHMGPP 325
            TK+PYIEDVGPRKIKSIQFS+ S+SEI K AEV+V++  YY+   +P+  GLLDP MGP 
Sbjct: 6    TKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGPA 65

Query: 326  NKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXXXHDKERR 505
            NK+G C TCHGNF +CPGHYGYL LALPVYNVGYL T++D               +K  +
Sbjct: 66   NKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLCK 125

Query: 506  DFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKV--QLKIIH 679
            D+LK MR+P+ + LKK ++ K +V +C+ M S  K V C +CGY+NG VKK    L IIH
Sbjct: 126  DYLKRMRSPKIDALKKGDIMKSIVKKCSAMASS-KAVKCWRCGYVNGTVKKAVAMLGIIH 184

Query: 680  ERGV---RFLDEFIGAISHKRELRASVSVPPEI-DPKTVYSLFKNMSDEDCELLYLSDRP 847
            +R       L+EF  AISH +E +AS +V   + +P  V SLFK M+D DCELLYLSDRP
Sbjct: 185  DRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRP 244

Query: 848  EKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSPNNKSL 1027
            EKL++T++ VPP  IRPSV +DG +QSNENDITERLKRIIQ NASL QE+ +T+   K L
Sbjct: 245  EKLIITNIAVPPIPIRPSVIMDG-SQSNENDITERLKRIIQANASLRQELVETNAAFKCL 303

Query: 1028 TLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRT 1207
              W  LQ+EVAQYINSDVRGVP  +Q  +PLSGF QR+KGK GRFRGNLSGKRVEYTGRT
Sbjct: 304  GGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRT 363

Query: 1208 VISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGT 1387
            VISPDPNLKITEVAIPI MARILTYPERVS HNIEKLRQCVRNGP+KYPGA+ +R+PDG+
Sbjct: 364  VISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGS 423

Query: 1388 EISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 1567
               L+   RKR ADELKFG +VDRHLEDGDIVLFNRQPSLHRMSIM HRARIMPWRTLRF
Sbjct: 424  ARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRF 483

Query: 1568 NESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLTS 1747
            NESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFLTS
Sbjct: 484  NESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 543

Query: 1748 SFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLRPYSKM 1927
            SFLITRKD FYDRA+FSLICSYMGD MD  DLPTPA +KP+ELWTGKQLF VLLRP++ +
Sbjct: 544  SFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASV 603

Query: 1928 RVYVNLTVTEKSYSGK-----------GETMCPSDGFVYFRNSELISGQLGKATLGNGNK 2074
            RVY+NL V E++YS K            ETMCP DGFVY RNSELI GQLGKATLGNGNK
Sbjct: 604  RVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNK 663

Query: 2075 DGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRN 2254
            DGLYSVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PG+ L  +K   I  +
Sbjct: 664  DGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGD 723

Query: 2255 YKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIM 2434
            YKKC++ IQ FN GKL  +PG DAAQTLEA VT  LN +RD  GK+CMK LHWRNSPLIM
Sbjct: 724  YKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIM 783

Query: 2435 SQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFD 2614
            SQCGSKGS INISQMIACVGQQSVGGRRAP+GFIDRSLPHF   SK PAAKGFVA+SF+ 
Sbjct: 784  SQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFYS 843

Query: 2615 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQF 2794
            GL+ATEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KALEDL+++YD+TVRNAS CIVQF
Sbjct: 844  GLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQF 903

Query: 2795 MYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMS 2974
            +YGDDGMDP+ ME K G PLNF RL MKVKATCPP  +K L    I +++ E+L+ HD  
Sbjct: 904  IYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHD-- 961

Query: 2975 PEGGCSEAFRASLSDFL 3025
            P G CSEAF+ SL  FL
Sbjct: 962  PAGVCSEAFKKSLKGFL 978


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1376 bits (3561), Expect = 0.0
 Identities = 688/982 (70%), Positives = 797/982 (81%), Gaps = 10/982 (1%)
 Frame = +2

Query: 116  MRRTQ-ETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVP 292
            M R Q E +  TKQPYIEDVGPRKIKS+QF+ FS +EI K AEV+V++G YY++T+KP+ 
Sbjct: 1    MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 293  NGLLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXX 472
             GLLDP MGP NK   C TCH NF +CPGHYGY+ LALPV+NVGY  T+++         
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 473  XXXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMV 652
                  +K  +DFL+ MRNP+ E L+K +L KK++ +C+T+T+G K+  CS+CGY+NG V
Sbjct: 121  SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSV 180

Query: 653  KKV--QLKIIHERGVRFLDEFIGAISHKRELRASVSVPPEI-DPKTVYSLFKNMSDEDCE 823
            KK    L I+H R      +  G +S   +LRA  +V  +I +P  V  LF+ MSDEDCE
Sbjct: 181  KKAVSMLGILHYRA---RSKDAGVVSE--DLRAPYNVSNDILNPFRVLCLFQRMSDEDCE 235

Query: 824  LLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSD 1003
            LL+LS+RPEKL++T+V VPP +IRPSV +DG +QSNENDITERLKRIIQ NAS+ QE+S 
Sbjct: 236  LLFLSNRPEKLIITNVLVPPIAIRPSVIMDG-SQSNENDITERLKRIIQQNASVSQELST 294

Query: 1004 TSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGK 1183
            ++   K L  W  LQ EVAQ INSDVRG+P  +Q  +PL+GF QRLKGKQGRFRGNL GK
Sbjct: 295  SNSQAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGK 354

Query: 1184 RVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAK 1363
            RVE+TGRTVISPDPNLKITEVA+PI MARILTYPERV++HNIEKLRQCV NGP+KYPGA+
Sbjct: 355  RVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGAR 414

Query: 1364 FIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARI 1543
             +RH DG+  SLM S RKR ADELK+G IV+RHLEDGD+VLFNRQPSLHRMSIM HR R+
Sbjct: 415  MLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRV 474

Query: 1544 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVA 1723
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPK+GEILVA
Sbjct: 475  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVA 534

Query: 1724 STQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGV 1903
            STQDFLTSSFLITRKDTFYDRA+FSL+CSYMGD MD  DLPTPA +KP+ELWTGKQLF V
Sbjct: 535  STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSV 594

Query: 1904 LLRPYSKMRVYVNLTVTEKSYSG-KG-----ETMCPSDGFVYFRNSELISGQLGKATLGN 2065
            L+RP++ M+VY+NLTV EKSYS  KG     ETMCP+DGFVYFRNSELISGQ+GKATLGN
Sbjct: 595  LVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGN 654

Query: 2066 GNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEI 2245
            GNKDGLYSVLLRDYK+HAAA CMNRLAKLSARWIGNHGFSIGIDDV PG+ LVK+KQ  I
Sbjct: 655  GNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTI 714

Query: 2246 HRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSP 2425
               Y+ C+  I  FN G L  + GCDAAQ+LE+++T  LN +R+    +CM+ LHWRNSP
Sbjct: 715  LEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSP 774

Query: 2426 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHS 2605
            LIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHF  K+K PAAKGFVA+S
Sbjct: 775  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANS 834

Query: 2606 FFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACI 2785
            F+ GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YDS+VRNA  CI
Sbjct: 835  FYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCI 894

Query: 2786 VQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYH 2965
            VQF YGDDGMDP+QME K G PLNF RLF+K KATCP  G K LS SE  E V +RLS  
Sbjct: 895  VQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKD 954

Query: 2966 DMSPEGGCSEAFRASLSDFLIK 3031
            D SPE GCS AF  SL  FL K
Sbjct: 955  DASPECGCSPAFVGSLKIFLNK 976


>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
          Length = 1368

 Score = 1340 bits (3468), Expect = 0.0
 Identities = 668/971 (68%), Positives = 771/971 (79%), Gaps = 6/971 (0%)
 Frame = +2

Query: 137  IQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLLDPHM 316
            +Q TKQPYIEDVG R+I+SI FS  S SE+LK A VEV++G+YY++ KKPV NGLLD  M
Sbjct: 1    LQSTKQPYIEDVGSRRIESINFSTLSGSEVLKTAVVEVYKGSYYDANKKPVSNGLLDMRM 60

Query: 317  GPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXXXHDK 496
            GPPNK   C TCHGNF+ECPGHYGYL LALPVYNVGYL  +VD               +K
Sbjct: 61   GPPNKRSVCGTCHGNFQECPGHYGYLALALPVYNVGYLSNIVDILKCICKNCSRVLLEEK 120

Query: 497  ERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQLKII 676
            E   FL+ MRNPR E LKK++L KK+V RCN+     K   C +CG++NGMVK+   K++
Sbjct: 121  EHHGFLRKMRNPRLEPLKKTDLFKKIVKRCNSKAGSNKLAKCPRCGHINGMVKRAPYKVM 180

Query: 677  HERGVRFLDEFIGAISHKRELRASV-SVPPEIDPKTVYSLFKNMSDEDCELLYLSDRPEK 853
            ++RG     +     S    ++AS  +    +D   V+ L +NM DEDCELLY+ DRPEK
Sbjct: 181  YDRGRVIDSQMEECQSAGPSMKASRGNTTSTLDALFVFRLLRNMLDEDCELLYIHDRPEK 240

Query: 854  LLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSPNNKSLTL 1033
            L+VT++ VPPT+IRPSVFVDGGTQSNENDITERLK II+ NA+L Q++ +T+   K +T 
Sbjct: 241  LMVTNILVPPTAIRPSVFVDGGTQSNENDITERLKYIIEANANLSQQLLETNIYKKGVTS 300

Query: 1034 WIDLQMEVAQYINSDVRGVPLHLQ-SQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRTV 1210
            W  LQ+EVAQYINSD RG+PL+   S +PLSGF QRLKGKQGRFRGNLSGKRVEYTGRTV
Sbjct: 301  WETLQIEVAQYINSDTRGLPLYGGGSSKPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 360

Query: 1211 ISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGTE 1390
            ISPDPNLKITEVA+PILMA+ILTYPERVS  NI +LR+CVR GPN+YPGAKFIR PDGTE
Sbjct: 361  ISPDPNLKITEVAVPILMAKILTYPERVSHQNIAELRECVRRGPNEYPGAKFIRQPDGTE 420

Query: 1391 ISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 1570
            ISL FSSRK HAD LK+G IVDRHL+DGDIVLFNRQPSLHRMSIM HRARIMPWRTLRFN
Sbjct: 421  ISLRFSSRKIHADALKYGDIVDRHLKDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 480

Query: 1571 ESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLTSS 1750
            ESVCNPYNADFDGDEMNMHVPQTEE+R EA+MLMGVQNNLCTPK+GE+LVASTQDFLTSS
Sbjct: 481  ESVCNPYNADFDGDEMNMHVPQTEESRAEAIMLMGVQNNLCTPKNGEVLVASTQDFLTSS 540

Query: 1751 FLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLRPYSKMR 1930
            FLITRKDTFYDR++FSLIC+++ D +   DLP PA +KPVELWTGKQ+F VLLRP    +
Sbjct: 541  FLITRKDTFYDRSAFSLICAFVSDGLGTVDLPMPAVVKPVELWTGKQIFSVLLRPDKDRK 600

Query: 1931 VYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYK 2110
            V+VNLTV EK Y   GETMCP DGFV  RNSELISGQLGKATLGNG+KDGLYS+LLRDY 
Sbjct: 601  VFVNLTVAEKIYVKSGETMCPRDGFVCIRNSELISGQLGKATLGNGSKDGLYSILLRDYG 660

Query: 2111 SHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKCEDCIQQFN 2290
            +HAAA CMNRLAKLSARWIGNHGFSIGI+DV PG+ L  +K+  I   Y +C   I+ + 
Sbjct: 661  AHAAADCMNRLAKLSARWIGNHGFSIGINDVQPGDILNTEKKTVIDDEYGQCIRYIESYK 720

Query: 2291 VGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKGSPINI 2470
             GKL + PGC+ A+TLEA++T +LNK+RD   ++CM  L WRNSPLIMSQCGSKGSPINI
Sbjct: 721  SGKLELLPGCNKAETLEAKITGTLNKIRDTTAEVCMTNLSWRNSPLIMSQCGSKGSPINI 780

Query: 2471 SQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTM 2650
             QM+ACVGQQSVGGRRAP+GF+DR+LPHF   +K P AKGFV +SF+ GL  TEFFFHTM
Sbjct: 781  CQMVACVGQQSVGGRRAPNGFLDRTLPHFERGAKDPDAKGFVQNSFYTGLLPTEFFFHTM 840

Query: 2651 GGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSQM 2830
            GGREGLVDTAVKTADTGYMSRRL+KALEDL+V YDSTVRNAS CIVQF YGDDG+DP+QM
Sbjct: 841  GGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDSTVRNASGCIVQFTYGDDGLDPAQM 900

Query: 2831 EEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVN----ERLSYHDMSPEGGCSEA 2998
            EEK G PLNF RLFMK KATCP  G+ SL   +I  I+N    E  S  D+S    CSE 
Sbjct: 901  EEKTGFPLNFERLFMKAKATCPSEGQPSLKAEDIDFIINRVIEENHSRSDISEMEKCSET 960

Query: 2999 FRASLSDFLIK 3031
            F ASL  FL K
Sbjct: 961  FEASLLRFLNK 971


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1323 bits (3425), Expect = 0.0
 Identities = 676/1000 (67%), Positives = 779/1000 (77%), Gaps = 31/1000 (3%)
 Frame = +2

Query: 116  MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPN 295
            +++  ++I  TKQPYIEDVGPRKI+SIQFS+ S+SEI+K AEV+V++G YY S + P+  
Sbjct: 5    LQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEG 64

Query: 296  GLLDPHM---------------GPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYL 430
            GLLDP M               GP NK+  C TCHG F  CPGHYGYL LALPVYNVGYL
Sbjct: 65   GLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYL 124

Query: 431  GTVVDXXXXXXXXXXXXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQK 610
             T++D               +K  +D+LK MRNP+ E L+K++L K +V +C+TM S  K
Sbjct: 125  STILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS--K 182

Query: 611  TVTCSKCGYMNGMVKKVQ--LKIIHERG--VRFLDEFIGAISHKRELRASVSVPPEI-DP 775
             V C +CGY+NGMVKK    L IIH+R      L EF  AI+H +E +A+V+V   I +P
Sbjct: 183  AVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNP 242

Query: 776  KTVYSLFKNMSDEDCELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERL 955
              V  LFK M+D DCE+LYLS+RPEKL++T++ VPP +IRPSV +DG +QSNENDITERL
Sbjct: 243  VNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERL 301

Query: 956  KRIIQTNASLHQEMSDTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQ 1135
            KRIIQTNASL QE+ + +   KSL  W  LQ+EVAQYINSDVRGVP  +Q  RPLSGF Q
Sbjct: 302  KRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQ 361

Query: 1136 RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEK 1315
            RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI MARILTYPERVS HNIEK
Sbjct: 362  RLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEK 421

Query: 1316 LRQCVRNGPNKYPGAKFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNR 1495
            LRQC++NGP+KYPGA+ IR+PDGT   L    R + A ELK G IVDRHLEDGD+VLFNR
Sbjct: 422  LRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNR 481

Query: 1496 QPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMG 1675
            QPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL+LMG
Sbjct: 482  QPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMG 541

Query: 1676 VQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPA 1855
            VQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFYDRA+FSL+C YMGD MD  DLPTPA
Sbjct: 542  VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPA 601

Query: 1856 FIKPVELWTGKQLFGVLLRPYSKMRVYVNLTVTEKSYSGK-----------GETMCPSDG 2002
             +KPVELWTGKQLF VL+RP++ MRVYVNLTV EK+YS K            ETMCP+DG
Sbjct: 602  ILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDG 661

Query: 2003 FVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGF 2182
            FVYFRNSELISGQLGKATLG                      CMNRLAKLSARWIGNHGF
Sbjct: 662  FVYFRNSELISGQLGKATLG----------------------CMNRLAKLSARWIGNHGF 699

Query: 2183 SIGIDDVTPGETLVKQKQEEIHRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSL 2362
            SIGIDDV P + L  +K + I  NY+ C   I+++N GKL ++PGCDAAQTLEA +T  L
Sbjct: 700  SIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDIL 759

Query: 2363 NKVRDDIGKICMKALHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDR 2542
            N++R+D GK CM +L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR
Sbjct: 760  NRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 819

Query: 2543 SLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLM 2722
            SLPHFP K+K PAAKGFVA+SF+ GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+
Sbjct: 820  SLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 879

Query: 2723 KALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPG 2902
            KALEDL++ YD++VRNA  CIVQF+YGDDGMDP+ ME K G PLNF RL MKVKATCPP 
Sbjct: 880  KALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPA 939

Query: 2903 GEKSLSYSEICEIVNERLSYHDMSPEGGCSEAFRASLSDF 3022
            G++ LS  ++ EIV ++L+ +    +  CSEAF  SL  F
Sbjct: 940  GQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKF 976


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1319 bits (3414), Expect = 0.0
 Identities = 671/984 (68%), Positives = 776/984 (78%), Gaps = 14/984 (1%)
 Frame = +2

Query: 116  MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPN 295
            M++  + I  TKQPYIEDVGPR+IKSIQFS  S S+ILK +E +VH G YY++ KK +  
Sbjct: 1    MQQRAQDIIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVG 60

Query: 296  GLLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXX 475
            GLLD  MG PNK+G C+TC G+F +CPGH+GYL L LPVYNVGYL T++D          
Sbjct: 61   GLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCS 120

Query: 476  XXXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVK 655
                 +K R+ +LK MRNPRTE LKK+EL K++V +C++M S  K V C +CGYMNGMVK
Sbjct: 121  RVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASS-KAVKCLRCGYMNGMVK 179

Query: 656  KVQ--LKIIHERGVR---FLDEFIGAISHKRELRASVSVPPEI-DPKTVYSLFKNMSDED 817
            K    + IIH+R      +L+E   AI H RE RA + +   I +P  V SLF+ M +ED
Sbjct: 180  KAGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEED 239

Query: 818  CELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEM 997
            CELLYL  RPEKL++T++ VPP SIRPSVF +G +QSNENDITERLK+IIQ NA L  E+
Sbjct: 240  CELLYLQGRPEKLIITTIAVPPISIRPSVFTEG-SQSNENDITERLKQIIQFNAKLRLEL 298

Query: 998  SDTSPNN-KSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNL 1174
             +      K L  W +LQ  V  YINSDVR +PL +Q  RPLSGF QRL GKQGRFR NL
Sbjct: 299  LEGRRTGIKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNL 357

Query: 1175 SGKRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYP 1354
            +GKRVE+TGRTVISPDPNLKITEVAIPI MARILTYPERV+ HNIEKLRQCV NG  KYP
Sbjct: 358  AGKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYP 417

Query: 1355 GAKFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHR 1534
            GA+ + +PDG+   L  + RKR A+ELK G IV RHLEDGD+VLFNRQPSLHRMSIM HR
Sbjct: 418  GARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHR 477

Query: 1535 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEI 1714
            ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA +LMGVQNNLCTPK+GEI
Sbjct: 478  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEI 537

Query: 1715 LVASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQL 1894
            LVASTQDFLTSSFLITRKDTFYDRA+FSL+CSYM D MD  DLPTP+ +KP+ELWTGKQL
Sbjct: 538  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQL 597

Query: 1895 FGVLLRPYSKMRVYVNLTVTEKSYSGKG-------ETMCPSDGFVYFRNSELISGQLGKA 2053
            F VLLRP++ +RVYVNL + EK+YS          ETMCP+DG+VYFRNSELISGQLGKA
Sbjct: 598  FSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKA 657

Query: 2054 TLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQK 2233
            TLGNGNKDGLYS+LLRDY ++AAATCMNRLAKLSARWIGNHGFSIGIDDV PG+ L+ +K
Sbjct: 658  TLGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEK 717

Query: 2234 QEEIHRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHW 2413
             + I   Y+ C   I  +N G+LA++ GCDA QTLE E+T  LNK+R++ G +CMK LHW
Sbjct: 718  GKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHW 777

Query: 2414 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGF 2593
            RNSPLIMSQCGSKGSPINISQMIACVGQQSVGG RAPDGFIDRSLPHFP KSK PAAKGF
Sbjct: 778  RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGF 837

Query: 2594 VAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNA 2773
            VA+SF+ GLSATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL V YD+TV++A
Sbjct: 838  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDA 897

Query: 2774 SACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNER 2953
               IVQF+YGDDG+DP+ ME K G PLNF RLFMKVKATC    ++ LS S+I  IV   
Sbjct: 898  GGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSL 957

Query: 2954 LSYHDMSPEGGCSEAFRASLSDFL 3025
            L  H+ + +G CSE+FR SLS FL
Sbjct: 958  LLKHNGTLDGICSESFRKSLSSFL 981


>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
            gi|482548169|gb|EOA12363.1| hypothetical protein
            CARUB_v10025743mg [Capsella rubella]
          Length = 1376

 Score = 1301 bits (3367), Expect = 0.0
 Identities = 657/980 (67%), Positives = 766/980 (78%), Gaps = 13/980 (1%)
 Frame = +2

Query: 125  TQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLL 304
            T+  I+ TK+PYIEDVG  KIKSI FS+ S+ E++K AEV+V + +YY+   KP   GLL
Sbjct: 3    TKMEIEYTKKPYIEDVGSLKIKSINFSMLSDLEVMKAAEVQVWKNSYYDPNCKPFEGGLL 62

Query: 305  DPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXX 484
            DP MGPPNK   C TC GNF+ CPGHYGYL L LPVYN+GY   ++D             
Sbjct: 63   DPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNIGYFNFILDILKCICKCCSNML 122

Query: 485  XHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ 664
              +K   D L+ MRNP+ E LKK+EL K VV +C+TM S Q+ +TC KCGY+NGMVKK+ 
Sbjct: 123  LDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMVKKIP 181

Query: 665  LK----IIHERGVRF---LDEFIGAISHKRELRASVS-VPPEIDPKTVYSLFKNMSDEDC 820
             +    I H+R       +DEF  AISH +E   +++ +   +DP  V  LFK MSD+DC
Sbjct: 182  AQMGIGISHDRSKIHGGEVDEFKAAISHIKESTQAINPLTYVLDPNVVLGLFKGMSDKDC 241

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            ELLY++ RPE L++T + VPP SIRPSV V GG+QSNEND++ RLK+IIQ NASLH+ +S
Sbjct: 242  ELLYIAHRPENLIITCMLVPPLSIRPSVMV-GGSQSNENDLSARLKQIIQDNASLHRILS 300

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
              + + K++ +W  +Q EVA+YINS+VRGV     S +P+SG  QRLKGKQGRFR NLSG
Sbjct: 301  QPTTSAKNMQVWDTVQSEVAKYINSEVRGVQNQPDS-KPMSGILQRLKGKQGRFRANLSG 359

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVEYTGRTVISPDPNLKITEV IPILMARILT+PE VS+HNIEKLRQCVRNGPNKYPGA
Sbjct: 360  KRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGA 419

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + +R+PDG+  +L+   RKR ADEL  G IVDRHLE+GD VLFNRQPSLHRMSIM HRAR
Sbjct: 420  RNVRYPDGSSRALVGDYRKRIADELAIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRAR 479

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPK+GEILV
Sbjct: 480  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILV 539

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFLITRKDTFYDRA+FSLICSYMGD MD  DLPTP  +KP+ELWTGKQ+F 
Sbjct: 540  ASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTVLKPIELWTGKQIFS 599

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYS----GKGETMCPSDGFVYFRNSELISGQLGKATLGNG 2068
            VLLRP + +RVYV L V EK++     G  ETMC +DG+VYFRNSELISGQLGKATLGNG
Sbjct: 600  VLLRPNASVRVYVTLNVKEKNFKKGNHGFDETMCTNDGWVYFRNSELISGQLGKATLGNG 659

Query: 2069 NKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIH 2248
            NKDGLYS+LLRDY SHAAA CMNRLAKLSARWIG HGFSIGIDDV PGE L +Q+++ I 
Sbjct: 660  NKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSRQRKDAIQ 719

Query: 2249 RNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPL 2428
              Y  C   I+ FN G L ++ G D A+TLEA +T  LN +R+D GK CM  LHWRNSPL
Sbjct: 720  SGYDDCHSIIENFNRGNLQLKAGLDGAKTLEAGITGILNTIREDTGKACMDGLHWRNSPL 779

Query: 2429 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSF 2608
            IMSQCGSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHFP  SK PAAKGFVA+SF
Sbjct: 780  IMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSF 839

Query: 2609 FDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIV 2788
            + GL+ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL V+YD+TVRNAS CI+
Sbjct: 840  YSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCIL 899

Query: 2789 QFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNERLSYH 2965
            QF YGDDGMDP+ ME K G PLNF+RLF+K++ATCPP    + LS  E+ +   E L  H
Sbjct: 900  QFTYGDDGMDPALMEGKDGAPLNFNRLFLKIQATCPPRSHHNYLSSEELSQKFEEELVRH 959

Query: 2966 DMSPEGGCSEAFRASLSDFL 3025
            D +    C++AF  SL DF+
Sbjct: 960  DKNRV--CTDAFVKSLRDFV 977


>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
            gi|557101978|gb|ESQ42341.1| hypothetical protein
            EUTSA_v10012446mg [Eutrema salsugineum]
          Length = 1375

 Score = 1299 bits (3361), Expect = 0.0
 Identities = 661/979 (67%), Positives = 772/979 (78%), Gaps = 12/979 (1%)
 Frame = +2

Query: 125  TQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLL 304
            T+  I+ TKQPYIEDVGP KIKSI FS+FS+ EI+K AEV+V R  YYES  KPV  GLL
Sbjct: 3    TKMEIEFTKQPYIEDVGPLKIKSINFSIFSDLEIMKAAEVQVWRNNYYESNFKPVEGGLL 62

Query: 305  DPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXX 484
            DP MGPPNK   C TCH +F+ CPGH+GYL L LPVYNVG+L  ++D             
Sbjct: 63   DPRMGPPNKKSICATCHADFQNCPGHFGYLKLDLPVYNVGFLNYILDILKCICKRCSNIL 122

Query: 485  XHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKV- 661
              +K   D LK MRNP+ E LKK+EL K VV +C+ M S Q+ +TC  CGY+NGMVKKV 
Sbjct: 123  IDEKLYEDHLKKMRNPKMEPLKKTELAKAVVKKCSMMAS-QRIITCKNCGYLNGMVKKVA 181

Query: 662  -QLKII---HERGVRF---LDEFIGAISHKRELRASVS-VPPEIDPKTVYSLFKNMSDED 817
             Q+ II   H+R       +DEF  AISH RE   +++ +   +DP  V  LFK MSD+D
Sbjct: 182  AQMGIIGISHDRSKIHGGEVDEFKSAISHTRESTGAINPLTYVLDPNLVLGLFKGMSDKD 241

Query: 818  CELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEM 997
            CELLY++ RPE L +  + VPP   RPSV + GGTQSNEND+TER+K+I+Q NAS  + +
Sbjct: 242  CELLYIAHRPENLFIICMFVPPLPTRPSVRI-GGTQSNENDLTERVKKILQDNASCKKIL 300

Query: 998  SDTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLS 1177
            +  + + K++ +W  +Q EVAQYINS+VRG+P    S +PLSG  QRLKGKQGRFR NLS
Sbjct: 301  NQATTSPKNMQVWDTVQSEVAQYINSEVRGIPNQPDS-KPLSGILQRLKGKQGRFRANLS 359

Query: 1178 GKRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPG 1357
            GKRVEYTGRTVISPDPNLKITEV IPILMARILT+PE VS+HNIEKLRQCVRNGPNKYPG
Sbjct: 360  GKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPG 419

Query: 1358 AKFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRA 1537
            A+ +R+PDG+  +L+   RKR ADEL  G IVDRHLE+GD VLFNRQPSLHRMSIM HRA
Sbjct: 420  ARSVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRA 479

Query: 1538 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEIL 1717
            RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPK+GEIL
Sbjct: 480  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 539

Query: 1718 VASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLF 1897
            VASTQDFLTSS+LITRKDTFYDRA+FSLICSYMGDAMD  DLPTP  +KP+ELWTGKQ+F
Sbjct: 540  VASTQDFLTSSYLITRKDTFYDRAAFSLICSYMGDAMDAIDLPTPTILKPIELWTGKQVF 599

Query: 1898 GVLLRPYSKMRVYVNLTVTEKSY-SGK-GETMCPSDGFVYFRNSELISGQLGKATLGNGN 2071
             VLLRP + +RVYV L V EK++  GK  ETMC +DG+VYFRNSELISGQLGKATLGNGN
Sbjct: 600  SVLLRPNASVRVYVTLNVKEKNFKKGKYDETMCTNDGWVYFRNSELISGQLGKATLGNGN 659

Query: 2072 KDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIHR 2251
            KDGLYSVLLRDY SHAAA CMNRLAKLSARWIG HGFS+GIDDV PGE L +++++ I++
Sbjct: 660  KDGLYSVLLRDYNSHAAAVCMNRLAKLSARWIGIHGFSLGIDDVQPGEELREEREKIINK 719

Query: 2252 NYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLI 2431
             Y+ C   I+ FN G+L ++ G D A++LE+++T  LN++R+  GK+CM+ LHWRNSPLI
Sbjct: 720  GYEDCGLKIRDFNEGRLQLKAGLDTAKSLESDITGILNRIREATGKLCMEGLHWRNSPLI 779

Query: 2432 MSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFF 2611
            MSQCGSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHFP  SK P AKGFVA+SF+
Sbjct: 780  MSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKTPEAKGFVANSFY 839

Query: 2612 DGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQ 2791
             GL+ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL V+YD+TVRNAS CI+Q
Sbjct: 840  SGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQ 899

Query: 2792 FMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNERLSYHD 2968
            F YGDDGMDP  ME K G PLNF RLF+K++ATCPP    S LS  E+ +   E L  HD
Sbjct: 900  FTYGDDGMDPVLMEGKDGAPLNFDRLFLKIQATCPPRSHHSFLSSEELLQKFEEELVRHD 959

Query: 2969 MSPEGGCSEAFRASLSDFL 3025
             S    C++AF  SL +FL
Sbjct: 960  TSRV--CTDAFVKSLREFL 976


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score = 1299 bits (3361), Expect = 0.0
 Identities = 661/980 (67%), Positives = 764/980 (77%), Gaps = 13/980 (1%)
 Frame = +2

Query: 125  TQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLL 304
            T+  I+ TKQPYIEDVGP KIKSI FS+ S+ E++K AEV+V +  YYE+  KP  NGLL
Sbjct: 3    TKMEIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLL 62

Query: 305  DPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXX 484
            D  MGPPNK   C TC GNF+ CPGHYGYL L LPVYNVG+   ++D             
Sbjct: 63   DARMGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNML 122

Query: 485  XHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ 664
              +K   D L+ MRNP+ E LKK+EL K VV +C+TM S Q+ +TC KCGY+NGMVKK+ 
Sbjct: 123  LDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMVKKIA 181

Query: 665  LK----IIHERGVRF---LDEFIGAISHKRE-LRASVSVPPEIDPKTVYSLFKNMSDEDC 820
             +    I H+R       +DE   AISH +E  RA   +   +DP  V  LFK MSD+DC
Sbjct: 182  AQMGIGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDC 241

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            ELLY++ RPE L+ T + VPP SIRPSV + GGT+SNENDITERLK IIQ NA LH+ +S
Sbjct: 242  ELLYIAHRPENLITTCMLVPPLSIRPSVMI-GGTRSNENDITERLKLIIQNNACLHRILS 300

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
              + + K++ +W  +Q EVA+YINS+VRGV  +   + PLSG  QRLKGKQGRFR NLSG
Sbjct: 301  QPTTSPKNMQVWDTVQSEVAKYINSEVRGVQ-NQPEKTPLSGLLQRLKGKQGRFRANLSG 359

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVEYTGRTVISPDPNLKITEV IPILMARILT+PE VS+HNIEKLRQCVRNGPNKYPGA
Sbjct: 360  KRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGA 419

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + +R+PDG+  +L+   RKR ADEL  G IVDRHLE+GD VLFNRQPSLHRMSIM HRAR
Sbjct: 420  RNVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRAR 479

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPK+GEILV
Sbjct: 480  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILV 539

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLT+SFLITRKDTFYDRA+FSLICSYMGD MD  DLPTP  +KP+ELWTGKQLF 
Sbjct: 540  ASTQDFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFS 599

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYS----GKGETMCPSDGFVYFRNSELISGQLGKATLGNG 2068
            VLLRP + +RVYV L V EK++     G  ETMC +DG+VYFRNSELISGQLGKATLGNG
Sbjct: 600  VLLRPNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFRNSELISGQLGKATLGNG 659

Query: 2069 NKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIH 2248
            NKDGLYS+LLRDY SHAAA CMNRLAKLSARWIG HGFSIGIDDV PGE L K++++ I 
Sbjct: 660  NKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELNKERKDSIQ 719

Query: 2249 RNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPL 2428
              Y +C   I++FN G L ++ G D A++LEAE+T  LN +R+  GK CM  LHWRNSPL
Sbjct: 720  FGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPL 779

Query: 2429 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSF 2608
            IMSQCGSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHFP  SK PAAKGFVA+SF
Sbjct: 780  IMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSF 839

Query: 2609 FDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIV 2788
            + GL+ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL V+YD+TVRNAS CI+
Sbjct: 840  YSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCIL 899

Query: 2789 QFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNERLSYH 2965
            QF YGDDGMDP+ ME K G PLNF RLF+K++ATCPP    + LS  E+ +   E L  H
Sbjct: 900  QFTYGDDGMDPALMEGKDGAPLNFDRLFLKIQATCPPRSHHNYLSSEELSQKFEEELVRH 959

Query: 2966 DMSPEGGCSEAFRASLSDFL 3025
            D S    C++AF  SL +F+
Sbjct: 960  DKSRV--CTDAFVKSLREFV 977


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score = 1289 bits (3336), Expect = 0.0
 Identities = 653/980 (66%), Positives = 766/980 (78%), Gaps = 13/980 (1%)
 Frame = +2

Query: 125  TQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLL 304
            T+  I+ TK+PYIEDVGP KIKSI FS+ S+ E++K AEV+V     Y+ + KP  NGLL
Sbjct: 3    TKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLL 62

Query: 305  DPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXX 484
            DP MGPPNK   C TC GNF+ CPGHYGYL L LPVYNVGY   ++D             
Sbjct: 63   DPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNML 122

Query: 485  XHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ 664
              +K   D L+ MRNPR E LKK+EL K VV +C+TM S Q+ +TC KCGY+NGMVKK+ 
Sbjct: 123  LDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMVKKIA 181

Query: 665  LK----IIHERGVRF---LDEFIGAISHKRELRASVS-VPPEIDPKTVYSLFKNMSDEDC 820
             +    I H+R       +DE   AISH ++  A+++ +   +DP  V  LFK MSD+DC
Sbjct: 182  AQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDC 241

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            ELLY++ RPE L++T + VPP SIRPSV + GG QSNEND+T RLK+II  NASLH+ +S
Sbjct: 242  ELLYIAYRPENLIITCMLVPPLSIRPSVMI-GGIQSNENDLTARLKQIILGNASLHKILS 300

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
              + + K++ +W  +Q+EVA+YINS+VRG   +   + PLSG  QRLKGK GRFR NLSG
Sbjct: 301  QPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSG 359

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVE+TGRTVISPDPNLKITEV IPILMA+ILT+PE VS+HNIEKLRQCVRNGPNKYPGA
Sbjct: 360  KRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGA 419

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + +R+PDG+  +L+   RKR ADEL  G IVDRHL++GD+VLFNRQPSLHRMSIM HRAR
Sbjct: 420  RNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRAR 479

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPK+GEILV
Sbjct: 480  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILV 539

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFLITRKDTFYDRA+FSLICSYMGD MD  DLPTP  +KP+ELWTGKQ+F 
Sbjct: 540  ASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFS 599

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYS----GKGETMCPSDGFVYFRNSELISGQLGKATLGNG 2068
            VLLRP + +RVYV L V EK++     G  ETMC +DG+VYFRNSELISGQLGKATLGNG
Sbjct: 600  VLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNG 659

Query: 2069 NKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIH 2248
            NKDGLYS+LLRDY SHAAA CMNRLAKLSARWIG HGFSIGIDDV PGE L K++++ I 
Sbjct: 660  NKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQ 719

Query: 2249 RNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPL 2428
              Y +C   I++FN G L ++ G D A++LEAE+T  LN +R+  GK CM  LHWRNSPL
Sbjct: 720  FGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPL 779

Query: 2429 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSF 2608
            IMSQCGSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHFP  SK PAAKGFVA+SF
Sbjct: 780  IMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSF 839

Query: 2609 FDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIV 2788
            + GL+ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL V+YD+TVRNAS CI+
Sbjct: 840  YSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCIL 899

Query: 2789 QFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNERLSYH 2965
            QF YGDDGMDP+ ME K G PLNF+RLF+KV+ATCPP    + LS  E+ +   E L  H
Sbjct: 900  QFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRH 959

Query: 2966 DMSPEGGCSEAFRASLSDFL 3025
            D S    C++AF  SL +F+
Sbjct: 960  DKSRV--CTDAFVKSLREFV 977


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score = 1289 bits (3336), Expect = 0.0
 Identities = 653/980 (66%), Positives = 766/980 (78%), Gaps = 13/980 (1%)
 Frame = +2

Query: 125  TQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNGLL 304
            T+  I+ TK+PYIEDVGP KIKSI FS+ S+ E++K AEV+V     Y+ + KP  NGLL
Sbjct: 3    TKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLL 62

Query: 305  DPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXX 484
            DP MGPPNK   C TC GNF+ CPGHYGYL L LPVYNVGY   ++D             
Sbjct: 63   DPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNML 122

Query: 485  XHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ 664
              +K   D L+ MRNPR E LKK+EL K VV +C+TM S Q+ +TC KCGY+NGMVKK+ 
Sbjct: 123  LDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMVKKIA 181

Query: 665  LK----IIHERGVRF---LDEFIGAISHKRELRASVS-VPPEIDPKTVYSLFKNMSDEDC 820
             +    I H+R       +DE   AISH ++  A+++ +   +DP  V  LFK MSD+DC
Sbjct: 182  AQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDC 241

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            ELLY++ RPE L++T + VPP SIRPSV + GG QSNEND+T RLK+II  NASLH+ +S
Sbjct: 242  ELLYIAYRPENLIITCMLVPPLSIRPSVMI-GGIQSNENDLTARLKQIILGNASLHKILS 300

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
              + + K++ +W  +Q+EVA+YINS+VRG   +   + PLSG  QRLKGK GRFR NLSG
Sbjct: 301  QPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSG 359

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVE+TGRTVISPDPNLKITEV IPILMA+ILT+PE VS+HNIEKLRQCVRNGPNKYPGA
Sbjct: 360  KRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGA 419

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + +R+PDG+  +L+   RKR ADEL  G IVDRHL++GD+VLFNRQPSLHRMSIM HRAR
Sbjct: 420  RNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRAR 479

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPK+GEILV
Sbjct: 480  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILV 539

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFLITRKDTFYDRA+FSLICSYMGD MD  DLPTP  +KP+ELWTGKQ+F 
Sbjct: 540  ASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFS 599

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYS----GKGETMCPSDGFVYFRNSELISGQLGKATLGNG 2068
            VLLRP + +RVYV L V EK++     G  ETMC +DG+VYFRNSELISGQLGKATLGNG
Sbjct: 600  VLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNG 659

Query: 2069 NKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEEIH 2248
            NKDGLYS+LLRDY SHAAA CMNRLAKLSARWIG HGFSIGIDDV PGE L K++++ I 
Sbjct: 660  NKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQ 719

Query: 2249 RNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPL 2428
              Y +C   I++FN G L ++ G D A++LEAE+T  LN +R+  GK CM  LHWRNSPL
Sbjct: 720  FGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPL 779

Query: 2429 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSF 2608
            IMSQCGSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHFP  SK PAAKGFVA+SF
Sbjct: 780  IMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSF 839

Query: 2609 FDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIV 2788
            + GL+ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL V+YD+TVRNAS CI+
Sbjct: 840  YSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCIL 899

Query: 2789 QFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS-LSYSEICEIVNERLSYH 2965
            QF YGDDGMDP+ ME K G PLNF+RLF+KV+ATCPP    + LS  E+ +   E L  H
Sbjct: 900  QFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRH 959

Query: 2966 DMSPEGGCSEAFRASLSDFL 3025
            D S    C++AF  SL +F+
Sbjct: 960  DKSRV--CTDAFVKSLREFV 977


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score = 1288 bits (3332), Expect = 0.0
 Identities = 657/995 (66%), Positives = 773/995 (77%), Gaps = 23/995 (2%)
 Frame = +2

Query: 119  RRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNG 298
            R   E I  TK+P++ED GPRKIK+++FS  SESEI K AEV+V +G+YY+S KKP+  G
Sbjct: 3    RARTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGG 62

Query: 299  LLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXX 478
            LLDP MGP NK+  C TC GNF +CPGHYGYL LALPV+NVGYL T+V+           
Sbjct: 63   LLDPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCAR 122

Query: 479  XXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKK 658
                +  R+  LK MR+      KKSEL K    +   +    K V C +CGY+NG VKK
Sbjct: 123  ILLDEDTRKKHLKKMRSS-----KKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKK 177

Query: 659  V--QLKIIHERGV---RFLDEFIGAISHKRELRASVSVPPEI-DPKTVYSLFKNMSDEDC 820
            +   L IIH+        ++E   A+S  ++ RA+ +V   I +P  V SLFK M DEDC
Sbjct: 178  LPASLTIIHDCSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDC 237

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            ELLY+++RPEKL++T+V VPP +IRPSV +D    SNENDITERLK IIQ NA L QE+ 
Sbjct: 238  ELLYVAERPEKLIMTNVVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQ 296

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
            +++ ++K L  W  LQ EVAQ+INSDVRG+P ++Q  + L+GF QRLKGK GRFRGNLSG
Sbjct: 297  ESTFSSKFLDGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSG 356

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVEYTGRTVISPDPNLKI+EVAIPI MARILTYPERV+ HNIEKLRQCVRNGP+KYPGA
Sbjct: 357  KRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGA 416

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + +R   G   SL    RKR ADEL+ G IVDRHLEDGDIVLFNRQPSLHRMSIM HRAR
Sbjct: 417  RMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 476

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGV+NNLCTPK+GEILV
Sbjct: 477  IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILV 536

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFLITRKDTFYDR++FSLICSY+GD MDP DLPTPA +KPVELW+GKQLF 
Sbjct: 537  ASTQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFS 596

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYSG---------KGETMCPSDGFVYFRNSELISGQLGKA 2053
            ++LRP++ MRVYVNLTV E++Y+          + +T+CP+DGFVYFRNSELISGQ+GK 
Sbjct: 597  IILRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKV 656

Query: 2054 TLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQK 2233
            TLGNGNKDGL+SVLLRDY++HAAA+CMNRLAKLSARWIGNHGFSIGIDDV P E L+ +K
Sbjct: 657  TLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKK 716

Query: 2234 QEEIHRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHW 2413
             E I   Y++C+  I+ FN GKL +  GCDAAQTLE  +T  LN +RD  GK+CM+ LHW
Sbjct: 717  DETISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHW 776

Query: 2414 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGF 2593
            RNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRR P+GFIDRSLPHFP KSK PAAKGF
Sbjct: 777  RNSPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGF 836

Query: 2594 VAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNA 2773
            VA+SF+ GLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK+LEDL ++YD TVRNA
Sbjct: 837  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNA 896

Query: 2774 SACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCP-PGGEKSLSYSEICEIVNE 2950
               IVQF YGDDGMDP+ ME K G+PLNF RLF+K KA CP    ++ LS S++ ++V+E
Sbjct: 897  GGSIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHE 956

Query: 2951 RLSYHDMSP-------EGGCSEAFRASLSDFLIKN 3034
            +LS  DMS        E G S  F  SL  F+  N
Sbjct: 957  KLSEFDMSRLAEKGVFEVGFSADFVESLQSFIKDN 991


>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1282 bits (3317), Expect = 0.0
 Identities = 646/992 (65%), Positives = 773/992 (77%), Gaps = 20/992 (2%)
 Frame = +2

Query: 119  RRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNG 298
            R   E I  TK+P++ED GPRKIK+++FS+ S+SEI K  EV+V +G+YY+S KKP+  G
Sbjct: 3    RGRTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGG 62

Query: 299  LLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXX 478
            LLDP MGP NK+  C TCHGNF +CPGHYGYL LALPV+NVGYLG++V+           
Sbjct: 63   LLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCAR 122

Query: 479  XXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKK 658
                +  R+  LK MR+      KKSEL K    +   +    K V C +CGY+NG VKK
Sbjct: 123  ILLDEDTRKKHLKKMRSS-----KKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKK 177

Query: 659  V--QLKIIHERGV---RFLDEFIGAISHKRELRASVSVPPEI-DPKTVYSLFKNMSDEDC 820
            +   L I+H+        ++E    +S  ++ +A+ +V   I +P  V SLF+ M DEDC
Sbjct: 178  LPASLIIMHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDC 237

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
            ELLY+++RPEKL++T++ VPP +IRPSV +D    SNENDITERLK IIQ NA L QE+ 
Sbjct: 238  ELLYVAERPEKLIITNIVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQ 296

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
            ++S ++K L  W  LQ EVAQ+INS+VRG+P ++QS + L+GF QRLKGK GRFRGNLSG
Sbjct: 297  ESSVSSKFLDGWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSG 356

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVEYTGRTVISPDPNLKI+EVAIPILMA ILTYPERV+ HNIEKLRQCVRNGP+KYPGA
Sbjct: 357  KRVEYTGRTVISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGA 416

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            + +R   G   SL    RKR ADEL+ G IVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR
Sbjct: 417  RMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 476

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPK+GEILV
Sbjct: 477  IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILV 536

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFL+TRKDTFYDR++F+ IC+++GD +D  DLPTPA +KPVELW+GKQLF 
Sbjct: 537  ASTQDFLTSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFS 596

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYSGKGE------TMCPSDGFVYFRNSELISGQLGKATLG 2062
            +LLRP++  +VYVNLTV EK+Y+   +      T+CP+DGFVYFRN+ELISGQ+GK TLG
Sbjct: 597  LLLRPHANFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLG 656

Query: 2063 NGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQEE 2242
            NGNKDGL+SVLLRDYK+HAAA+CMNRLAKLSARWIGNHGFSIGIDDV P E L+K+K E 
Sbjct: 657  NGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDET 716

Query: 2243 IHRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNS 2422
            +   YKKC++ IQ FN GKL +  GCDA QTLE ++T  LN +RD  GK+CM+ LHWRNS
Sbjct: 717  LSEGYKKCDNHIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNS 776

Query: 2423 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAH 2602
            PLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF+DRSLPHFP  +K PAAKGFVA+
Sbjct: 777  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVAN 836

Query: 2603 SFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASAC 2782
            SF+ GLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK++EDL ++YD TVRNA   
Sbjct: 837  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGS 896

Query: 2783 IVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCP-PGGEKSLSYSEICEIVNERLS 2959
            IVQF YGDDGMDP  ME K G+PLNF RLF+K KA CP    ++ LS S++C++V E+LS
Sbjct: 897  IVQFCYGDDGMDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLS 956

Query: 2960 YHDMSP-------EGGCSEAFRASLSDFLIKN 3034
               +S        E G S  F  SL  F+  N
Sbjct: 957  EFGVSREVEKGVLEVGFSADFVQSLQSFIKDN 988


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1281 bits (3315), Expect = 0.0
 Identities = 660/958 (68%), Positives = 759/958 (79%), Gaps = 18/958 (1%)
 Frame = +2

Query: 206  LFSESEILKQAEVEVHRGAYYESTKKPVPNGLLDPHMGPPNK-NGCCETCHGNFRECPGH 382
            + S +EILK AE +VH G+YY+ST+KP+  GLLDP +GP  K +  CETC  +F ECPGH
Sbjct: 1    MMSGAEILKAAECQVHLGSYYDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGH 60

Query: 383  YGYLVLALPVYNVGYLGTVVDXXXXXXXXXXXXXXHDKERRDFLKMMRNPRTEYLKKSEL 562
            +GYL L LPV+NVGY+  ++D               +K  +  LK MRNPR E+L+KSEL
Sbjct: 61   FGYLNLVLPVFNVGYMSNILDILKCICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSEL 120

Query: 563  QKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKKVQ--LKIIHERGVR---FLDEFIGAISH 727
             KK+V +C++MTS  K V C++CG MNGMVKK    L IIH+R      +L+E   AI+H
Sbjct: 121  VKKIVKKCSSMTSN-KAVKCTRCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAH 179

Query: 728  KRELRASVSVPPEI-DPKTVYSLFKNMSDEDCELLYLSDRPEKLLVTSVPVPPTSIRPSV 904
             +E RA +S+   I  P  V SLFK + +EDCE+L L DRPEKL++T++ VPP SIRPSV
Sbjct: 180  TKESRAPISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSV 239

Query: 905  FVDGGTQSNENDITERLKRIIQTNASLHQEMSDTSPN-NKSLTLWIDLQMEVAQYINSDV 1081
            F DG  QSNENDITERLK+IIQ NASL  E+ +   + NK L  W  LQ  VA Y+NSDV
Sbjct: 240  FTDG-LQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGLQAAVALYMNSDV 298

Query: 1082 RGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIL 1261
            R VP +++  +PLSGF QRLKGKQGRFRGNLSGKRVE+TGRTVISPDPNLKITEVAIPI 
Sbjct: 299  R-VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIH 357

Query: 1262 MARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGTEISLMFSSRKRHADELKF 1441
            MARIL+YPERVS HNIEKLRQ V NGP KYPGA  +R+PDG+   L+ S RK  A+EL F
Sbjct: 358  MARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTF 417

Query: 1442 GYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMN 1621
            G IVDRHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMN
Sbjct: 418  GCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMN 477

Query: 1622 MHVPQTEEARTEALMLMGV-QNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYDRASFS 1798
            MHVPQTEEARTEAL+LMGV QNNLCTPK+GEILVASTQDFLTSSFLITR+DTFYDRA+FS
Sbjct: 478  MHVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFS 537

Query: 1799 LICSYMGDAMDPADLPTPAFIKPVELWTGKQLFGVLLRPYSKMRVYVNLTVTEKSYSG-- 1972
            L+CSYM D MD  DLPTPA +KP+ELWTGKQLF VLLRP + +RVYVNL V EK YS   
Sbjct: 538  LMCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPK 597

Query: 1973 KG-----ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCMN 2137
            KG     ETMCP+DGFVY RNSELISGQLGKATLGNGNKDGLYS+LLRDY  HAAATCMN
Sbjct: 598  KGDKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMN 657

Query: 2138 RLAKLS--ARWIGNHGFSIGIDDVTPGETLVKQKQEEIHRNYKKCEDCIQQFNVGKLAVQ 2311
            RLAKL   ARWIGNHGFSIGIDDV PG+ L+  K + I   Y++C+  I+Q+N GKL ++
Sbjct: 658  RLAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLK 717

Query: 2312 PGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKGSPINISQMIACV 2491
            PGCDA QTLE+E+T  LNK+R++ G +CMK LHWRNSPLIMSQCGSKGS INISQM+ACV
Sbjct: 718  PGCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACV 777

Query: 2492 GQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLV 2671
            GQQSVGGRRAPDGFIDRSLPHFP KSK PAAKGFVA+SF+ GL ATEFFFHTM GREGLV
Sbjct: 778  GQQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLV 837

Query: 2672 DTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSQMEEKKGRP 2851
            DTAVKTADTGYMSRRL+K LEDL++ YD+TVRNAS CIVQF+YGDDG+DP+ ME K G P
Sbjct: 838  DTAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVP 897

Query: 2852 LNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMSPEGGCSEAFRASLSDFL 3025
            LN  RLF KVKATCP   E  LS  +I ++V   L  HDM+  G CSEAF+ SL+ FL
Sbjct: 898  LNLDRLFSKVKATCPVREEDYLSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFL 955


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score = 1278 bits (3307), Expect = 0.0
 Identities = 640/966 (66%), Positives = 763/966 (78%), Gaps = 14/966 (1%)
 Frame = +2

Query: 119  RRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSESEILKQAEVEVHRGAYYESTKKPVPNG 298
            R   E +  TK+P+IED+GPRKI  I +S  SE+EI K  EV+V +G YY++ +KP  +G
Sbjct: 3    RSRTEGLVFTKEPFIEDLGPRKIAGITYSTLSEAEISKIGEVQVWKGTYYDAFRKPEADG 62

Query: 299  LLDPHMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDXXXXXXXXXXX 478
            LLD  MGP NK+  C TCHGNF +C GHYGYL L  PV+NVGYL T+V            
Sbjct: 63   LLDSRMGPANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCICKGCAG 122

Query: 479  XXXHDKERRDFLKMMRNPRTEYLKKSELQKKVVNRCNTMTSGQKTVTCSKCGYMNGMVKK 658
                +  R+ +LK MRN + + L+K +L + ++ R  +     K + C +CGY+NG+VK 
Sbjct: 123  ILLDEDTRKKYLKKMRNSKLDELQKIQLLESIMKRFRSA----KFIKCQRCGYINGIVKL 178

Query: 659  VQ--LKIIHE--RGVR-FLDEFIGAISHKRELRASVSVPPE-IDPKTVYSLFKNMSDEDC 820
             +  L+I+H+   G    + E   A+SH +E RA+  +    +DPK+V+SLF  MSDEDC
Sbjct: 179  TRSTLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDC 238

Query: 821  ELLYLSDRPEKLLVTSVPVPPTSIRPSVFVDGGTQSNENDITERLKRIIQTNASLHQEMS 1000
             LLYL++RPEKL++T++ VPP  IRPSV +DG +QSNENDITE+L++IIQ NA+LH+E+ 
Sbjct: 239  ALLYLAERPEKLIITNIAVPPIVIRPSVIMDG-SQSNENDITEKLRKIIQANAALHKELE 297

Query: 1001 DTSPNNKSLTLWIDLQMEVAQYINSDVRGVPLHLQSQRPLSGFTQRLKGKQGRFRGNLSG 1180
            +++       +   LQ  VAQYINSDV+G P  +Q+ +PL+GF QR+KGKQGRFR NLSG
Sbjct: 298  ESTKFQGGFEM---LQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSG 354

Query: 1181 KRVEYTGRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGA 1360
            KRVEYTGRTVISPDPNLKITEVAIPI MARILTYPERV+ HNIEKLRQC+RNGP+KYPGA
Sbjct: 355  KRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGA 414

Query: 1361 KFIRHPDGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 1540
            K +RH  GT  +L  S RKR ADEL+FG IVDRHLEDGD+VLFNRQPSLHRMS+M HRAR
Sbjct: 415  KLLRHAGGTTWNLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRAR 474

Query: 1541 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILV 1720
            IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LM VQNNLCTPK+GEILV
Sbjct: 475  IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILV 534

Query: 1721 ASTQDFLTSSFLITRKDTFYDRASFSLICSYMGDAMDPADLPTPAFIKPVELWTGKQLFG 1900
            ASTQDFLTSSFLITRKDTFYDR++FSLICSYMGD MDP DLPTPA IKPVELW+GKQLF 
Sbjct: 535  ASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFS 594

Query: 1901 VLLRPYSKMRVYVNLTVTEKSYSGK-------GETMCPSDGFVYFRNSELISGQLGKATL 2059
            +LLRP++ +RVYVNLTV EK+++ K        +TMCP+DGFVYFRNSELISGQLGK TL
Sbjct: 595  ILLRPHANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTL 654

Query: 2060 GNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGETLVKQKQE 2239
            GNGNKDGL+SVLLRDYK+HAAA+CMNRLAK SARWIGNHGFSIGIDDV P E L+ +K+E
Sbjct: 655  GNGNKDGLFSVLLRDYKAHAAASCMNRLAKFSARWIGNHGFSIGIDDVQPKEILIHRKKE 714

Query: 2240 EIHRNYKKCEDCIQQFNVGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRN 2419
             I   Y +C+  I+ FN GKL + PGCDAAQTLEA++   LN +RD   K+CM+ LHWRN
Sbjct: 715  TITTGYSECDGFIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRN 774

Query: 2420 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVA 2599
            SPLIMSQCGSKGSPINI QM+ACVGQQSVGG RA +GF+DRSLPHF  K+K PA KGFVA
Sbjct: 775  SPLIMSQCGSKGSPINICQMVACVGQQSVGGCRAANGFVDRSLPHFTKKAKTPADKGFVA 834

Query: 2600 HSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASA 2779
            +SFF GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL ++YD TVR+ + 
Sbjct: 835  NSFFTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNG 894

Query: 2780 CIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEK-SLSYSEICEIVNERL 2956
             IVQF YGDDGMDPS ME K G+PLNF RLF+K KA CP  G+   LS S++CE++ ++L
Sbjct: 895  GIVQFCYGDDGMDPSGMEGKNGKPLNFDRLFLKSKAICPSDGDDIILSSSDVCEVIRKKL 954

Query: 2957 SYHDMS 2974
            S   MS
Sbjct: 955  SEVGMS 960