BLASTX nr result
ID: Atropa21_contig00000309
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00000309
(489 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,... 288 5e-76
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,... 286 3e-75
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 205 6e-51
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 205 6e-51
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,... 188 6e-46
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis] 185 5e-45
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu... 185 5e-45
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu... 185 5e-45
gb|EMJ20400.1| hypothetical protein PRUPE_ppa017025mg [Prunus pe... 184 1e-44
gb|ESW20889.1| hypothetical protein PHAVU_005G023100g [Phaseolus... 178 8e-43
gb|ESW20887.1| hypothetical protein PHAVU_005G023100g [Phaseolus... 178 8e-43
gb|ESW20886.1| hypothetical protein PHAVU_005G023100g [Phaseolus... 178 8e-43
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr... 175 5e-42
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,... 173 2e-41
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t... 171 7e-41
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca... 170 2e-40
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca... 170 2e-40
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab... 169 3e-40
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 168 6e-40
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,... 165 5e-39
>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum tuberosum]
Length = 421
Score = 288 bits (737), Expect = 5e-76
Identities = 146/160 (91%), Positives = 155/160 (96%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GSISELVPKICNANTELSRKLRRMPSYDEIAEAL +DVSTVRLVIER RAPISIDQIVTS
Sbjct: 262 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTS 321
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
QGYMSLQ+IISGPEDT PEE VK+QMMKQDLEK+LHNVLCDREAKILKLHFGLNGD PQS
Sbjct: 322 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQS 381
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYIT 9
FEEIGR+LKLSRERIRQINCT+LSKLRES+MLD+F+MYIT
Sbjct: 382 FEEIGRVLKLSRERIRQINCTALSKLRESSMLDNFKMYIT 421
>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum lycopersicum]
Length = 442
Score = 286 bits (731), Expect = 3e-75
Identities = 145/160 (90%), Positives = 155/160 (96%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GSISELVPKICNANTELSRKLRRMPSYDEIAEAL +DVSTVRLVIER RAPISIDQIVT+
Sbjct: 283 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTT 342
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
QGYMSLQ+IISGPEDT PEE VK+QMMKQDLEK+L NVLCDREAKILKLHFGLNGDTPQS
Sbjct: 343 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQS 402
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYIT 9
FEEIGR+LKLSRERIRQINCT+LSKLRES+MLD+F+MYIT
Sbjct: 403 FEEIGRVLKLSRERIRQINCTALSKLRESSMLDNFKMYIT 442
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 205 bits (521), Expect = 6e-51
Identities = 100/159 (62%), Positives = 136/159 (85%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GSI E+V KI A T LSR+LRR+P+YDEIAE +D++VSTVRLV ER R PIS+DQ VTS
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
QG M+LQ+II GP++T P++MVK+Q+MKQ++E+ L N LC+REA IL+L+FG+NG+TP S
Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERAL-NTLCEREAYILRLYFGINGETPLS 279
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
FEEIGR++KLSRER+RQIN +LSKLR+++++D ++Y+
Sbjct: 280 FEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 318
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 205 bits (521), Expect = 6e-51
Identities = 100/159 (62%), Positives = 136/159 (85%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GSI E+V KI A T LSR+LRR+P+YDEIAE +D++VSTVRLV ER R PIS+DQ VTS
Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 327
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
QG M+LQ+II GP++T P++MVK+Q+MKQ++E+ L N LC+REA IL+L+FG+NG+TP S
Sbjct: 328 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERAL-NTLCEREAYILRLYFGINGETPLS 386
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
FEEIGR++KLSRER+RQIN +LSKLR+++++D ++Y+
Sbjct: 387 FEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 425
>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 452
Score = 188 bits (478), Expect = 6e-46
Identities = 91/159 (57%), Positives = 128/159 (80%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
G + ++ KI A +++ +R+PS+DEIAE +++ S VRLV ER R P+S+D++VT
Sbjct: 294 GHMCGVMAKITRAKKNFNQRFQRLPSHDEIAEMINVQASIVRLVCERSRLPLSLDRVVTD 353
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
QG M+LQDII GP++ +PE M+KKQ+MKQ++EKLL N L DREA++L+LHFGLNGDTPQS
Sbjct: 354 QGCMALQDIIRGPDEMMPETMLKKQLMKQEMEKLL-NRLSDREAEVLRLHFGLNGDTPQS 412
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
FEEIGR+LKLSRER+RQIN +LSKL++++ L+ ++YI
Sbjct: 413 FEEIGRLLKLSRERVRQINSIALSKLKQTSTLEDLKLYI 451
>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 422
Score = 185 bits (470), Expect = 5e-45
Identities = 91/160 (56%), Positives = 126/160 (78%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
G++ +V K+ AN L+++LRR P+YDEIA+ + + VSTVRLV ERIR PIS+D+ +T
Sbjct: 261 GNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITE 320
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
+G M+LQ+II GPE+ PE+MV+KQ+MKQ++EKLL VL DREA +L+LHFGL+GD P S
Sbjct: 321 RGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLS 380
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYIT 9
EEIGR+LKLSRERIRQIN +LSKL+++ +++ + T
Sbjct: 381 CEEIGRLLKLSRERIRQINGIALSKLQQTNIVNDLRILYT 420
>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331146|gb|ERP56881.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 423
Score = 185 bits (470), Expect = 5e-45
Identities = 93/153 (60%), Positives = 120/153 (78%)
Frame = -2
Query: 473 LVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGYMS 294
LV KI AN +LS KLRR PSYDEIA+ L++ VSTVRL ER R+PIS+DQ V Q ++
Sbjct: 269 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNSLT 328
Query: 293 LQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIG 114
LQ+II GP++T+PE MVK++++KQ+LEKL VL +REA IL+LHFGLNG TPQS EEIG
Sbjct: 329 LQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIG 388
Query: 113 RMLKLSRERIRQINCTSLSKLRESTMLDSFEMY 15
R++KLSRER+RQI T+LSKLR +++ + Y
Sbjct: 389 RLVKLSRERVRQIIGTALSKLRHKEIVEPLKAY 421
>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331145|gb|ERP56880.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 419
Score = 185 bits (470), Expect = 5e-45
Identities = 93/153 (60%), Positives = 120/153 (78%)
Frame = -2
Query: 473 LVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGYMS 294
LV KI AN +LS KLRR PSYDEIA+ L++ VSTVRL ER R+PIS+DQ V Q ++
Sbjct: 265 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNSLT 324
Query: 293 LQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIG 114
LQ+II GP++T+PE MVK++++KQ+LEKL VL +REA IL+LHFGLNG TPQS EEIG
Sbjct: 325 LQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIG 384
Query: 113 RMLKLSRERIRQINCTSLSKLRESTMLDSFEMY 15
R++KLSRER+RQI T+LSKLR +++ + Y
Sbjct: 385 RLVKLSRERVRQIIGTALSKLRHKEIVEPLKAY 417
>gb|EMJ20400.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
Length = 440
Score = 184 bits (467), Expect = 1e-44
Identities = 88/159 (55%), Positives = 129/159 (81%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
G + ++ KI A L+++ +R+PS+DEIAE + ++ STV+LV ER R PIS+D++ T
Sbjct: 282 GHVCGMMAKITKAQNSLNQRFQRLPSHDEIAEVIKVNASTVKLVCERSRPPISLDRVATV 341
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
+G M+LQ+II GPE+ +PE+M+ +Q+MKQ++EKLL L DREA +L+LHFGLNG++PQS
Sbjct: 342 RGSMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLL-KTLSDREANVLRLHFGLNGESPQS 400
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
FEEIGR+LKLSRER+RQIN +LSKLR++++LD+ ++YI
Sbjct: 401 FEEIGRLLKLSRERVRQINGIALSKLRQTSILDNLKLYI 439
>gb|ESW20889.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
Length = 367
Score = 178 bits (451), Expect = 8e-43
Identities = 88/156 (56%), Positives = 125/156 (80%)
Frame = -2
Query: 479 SELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGY 300
SE+V K+ AN LS +LRR P+YDE AE L++ ST+RLV E+ R PIS+D++VT G+
Sbjct: 212 SEMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGH 271
Query: 299 MSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEE 120
M+LQ+II GPED PE+MVK+Q+MKQ++ KLL N L REA+I+ L++GLNG+TP +F+E
Sbjct: 272 MTLQEIIPGPEDMTPEKMVKRQLMKQEVMKLL-NTLSKREAEIVTLYYGLNGETPLTFKE 330
Query: 119 IGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
IG M++LSRERIRQIN +LSKLR+++++D+ + Y+
Sbjct: 331 IGGMMQLSRERIRQINGIALSKLRQTSIIDNLKFYL 366
>gb|ESW20887.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
Length = 366
Score = 178 bits (451), Expect = 8e-43
Identities = 88/156 (56%), Positives = 125/156 (80%)
Frame = -2
Query: 479 SELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGY 300
SE+V K+ AN LS +LRR P+YDE AE L++ ST+RLV E+ R PIS+D++VT G+
Sbjct: 211 SEMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGH 270
Query: 299 MSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEE 120
M+LQ+II GPED PE+MVK+Q+MKQ++ KLL N L REA+I+ L++GLNG+TP +F+E
Sbjct: 271 MTLQEIIPGPEDMTPEKMVKRQLMKQEVMKLL-NTLSKREAEIVTLYYGLNGETPLTFKE 329
Query: 119 IGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
IG M++LSRERIRQIN +LSKLR+++++D+ + Y+
Sbjct: 330 IGGMMQLSRERIRQINGIALSKLRQTSIIDNLKFYL 365
>gb|ESW20886.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
Length = 296
Score = 178 bits (451), Expect = 8e-43
Identities = 88/156 (56%), Positives = 125/156 (80%)
Frame = -2
Query: 479 SELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGY 300
SE+V K+ AN LS +LRR P+YDE AE L++ ST+RLV E+ R PIS+D++VT G+
Sbjct: 141 SEMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGH 200
Query: 299 MSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEE 120
M+LQ+II GPED PE+MVK+Q+MKQ++ KLL N L REA+I+ L++GLNG+TP +F+E
Sbjct: 201 MTLQEIIPGPEDMTPEKMVKRQLMKQEVMKLL-NTLSKREAEIVTLYYGLNGETPLTFKE 259
Query: 119 IGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
IG M++LSRERIRQIN +LSKLR+++++D+ + Y+
Sbjct: 260 IGGMMQLSRERIRQINGIALSKLRQTSIIDNLKFYL 295
>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
gi|557541154|gb|ESR52198.1| hypothetical protein
CICLE_v10033747mg [Citrus clementina]
Length = 436
Score = 175 bits (444), Expect = 5e-42
Identities = 90/159 (56%), Positives = 126/159 (79%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GS+S +V KI AN LSR+LRRMP+ +EIAE L++ VSTVRL IER R PIS+D +T
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITD 337
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
G M+LQDII GP++T+PE+MV+KQ+MKQ+L++LL L +REA IL+LHFGL+G TP S
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELL-QTLSEREADILRLHFGLDGQTPVS 396
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
+EIGR+L LSRER+RQI +L+KL+++ + ++ ++Y+
Sbjct: 397 CKEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYM 435
>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Citrus sinensis]
Length = 436
Score = 173 bits (438), Expect = 2e-41
Identities = 89/159 (55%), Positives = 124/159 (77%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GS+S +V KI AN LSR+LRRMP+ EIAE L++ VS VRL IER R PIS+D +T
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITD 337
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
G M+LQDII GP++T+PE+MV+KQ+MKQ+L++LL L +REA IL+LHFGL+G TP S
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELL-QTLSEREADILRLHFGLDGQTPVS 396
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
+EIGR+L LSRER+RQI +L+KL+++ + ++ ++Y+
Sbjct: 397 CKEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYM 435
>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
rpoD [Medicago truncatula]
Length = 185
Score = 171 bits (434), Expect = 7e-41
Identities = 87/154 (56%), Positives = 123/154 (79%)
Frame = -2
Query: 473 LVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGYMS 294
+V KI AN L R+LRR P+Y+EIAE L+++VSTV+LV ER R PIS+D+ +T Q +
Sbjct: 32 MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 91
Query: 293 LQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIG 114
L++II GP + +PE+MV++Q+MKQ + KLL N L RE +I++L+FGLNG+TP SFEEIG
Sbjct: 92 LKEIIPGPVEMIPEKMVERQLMKQGVVKLL-NTLDKREEEIVRLYFGLNGETPLSFEEIG 150
Query: 113 RMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
++LKLSRERIRQI+ +LSKLR++T++DS + Y+
Sbjct: 151 KLLKLSRERIRQIHGIALSKLRQNTIVDSLKFYV 184
>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 267
Score = 170 bits (430), Expect = 2e-40
Identities = 86/154 (55%), Positives = 122/154 (79%)
Frame = -2
Query: 473 LVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGYMS 294
+V KI AN L R+LRR P+Y+EIAE L+++VSTV+LV ER R PIS+D+ +T Q +
Sbjct: 114 MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 173
Query: 293 LQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIG 114
L++II GP + +PE+MV++Q+MKQ + KLL N L RE +I++L+FGLNG+TP SFEEIG
Sbjct: 174 LKEIIPGPVEMIPEKMVERQLMKQGVVKLL-NTLDKREEEIVRLYFGLNGETPLSFEEIG 232
Query: 113 RMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
++LKLSRERIRQI+ +LSKL ++T++DS + Y+
Sbjct: 233 KLLKLSRERIRQIHGIALSKLEQNTLVDSLKFYV 266
>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 403
Score = 170 bits (430), Expect = 2e-40
Identities = 86/154 (55%), Positives = 122/154 (79%)
Frame = -2
Query: 473 LVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGYMS 294
+V KI AN L R+LRR P+Y+EIAE L+++VSTV+LV ER R PIS+D+ +T Q +
Sbjct: 250 MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 309
Query: 293 LQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIG 114
L++II GP + +PE+MV++Q+MKQ + KLL N L RE +I++L+FGLNG+TP SFEEIG
Sbjct: 310 LKEIIPGPVEMIPEKMVERQLMKQGVVKLL-NTLDKREEEIVRLYFGLNGETPLSFEEIG 368
Query: 113 RMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
++LKLSRERIRQI+ +LSKL ++T++DS + Y+
Sbjct: 369 KLLKLSRERIRQIHGIALSKLEQNTLVDSLKFYV 402
>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
Length = 273
Score = 169 bits (428), Expect = 3e-40
Identities = 85/158 (53%), Positives = 121/158 (76%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GS+ EL K+ A+ L+RKLRR PS +EIAE L+L VS VRL +ER R+P+S+D++V+
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQ 171
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
G M+LQ+I+ GP++T PEEMVK++ MK ++E+LL + L RE+++L L+FGLNG+TP S
Sbjct: 172 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS-LTARESRVLGLYFGLNGETPMS 230
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMY 15
FEEIG+ LKLSRER+RQIN +L KLR ++ ++Y
Sbjct: 231 FEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 268
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 168 bits (426), Expect = 6e-40
Identities = 84/158 (53%), Positives = 121/158 (76%)
Frame = -2
Query: 488 GSISELVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTS 309
GS+ EL K+ A+ L+RKLRR PS +EIAE L+L+VS VRL +ER R+P+S+D++ +
Sbjct: 258 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQ 317
Query: 308 QGYMSLQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQS 129
G M+LQ+I+ GP++T PEEMVK++ MK ++E+LL + L RE+++L L+FGLNG+TP S
Sbjct: 318 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS-LTARESRVLGLYFGLNGETPMS 376
Query: 128 FEEIGRMLKLSRERIRQINCTSLSKLRESTMLDSFEMY 15
FEEIG+ LKLSRER+RQIN +L KLR ++ ++Y
Sbjct: 377 FEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cicer arietinum]
Length = 407
Score = 165 bits (418), Expect = 5e-39
Identities = 84/154 (54%), Positives = 122/154 (79%)
Frame = -2
Query: 473 LVPKICNANTELSRKLRRMPSYDEIAEALDLDVSTVRLVIERIRAPISIDQIVTSQGYMS 294
+V KI A LS++LRR P+Y+E+AE L+++VS V+LV ER R PIS+D+ V QG ++
Sbjct: 254 MVGKIAEAKNVLSKRLRRKPTYNEMAEVLNVNVSIVKLVSERSRQPISLDKAVFDQGNLT 313
Query: 293 LQDIISGPEDTLPEEMVKKQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIG 114
L++I+ GP + +PE+MV++Q+ KQ + KLL N L REA+IL+L+FGLNG+TP SFEEIG
Sbjct: 314 LKEIMPGPVEMIPEKMVERQLKKQGVVKLL-NTLNKREAEILRLYFGLNGETPLSFEEIG 372
Query: 113 RMLKLSRERIRQINCTSLSKLRESTMLDSFEMYI 12
+ LKLSRERIRQI+ +LSKL+++T++DS + Y+
Sbjct: 373 KQLKLSRERIRQIHGIALSKLQQTTLVDSLKFYV 406