BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00056536
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...    96   4e-18
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    94   2e-17
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]      92   6e-17
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza...    87   1e-15
gb|ABB47941.2| retrotransposon protein, putative, unclassified [...    87   1e-15

>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 48/105 (45%), Positives = 66/105 (62%)
 Frame = -1

Query: 317 ILRCDRTGELYPLSLPSAQVTPPSTFTALTQDLWHKRLGHPSSSLL*VLNNRHFISVKTF 138
           ILRC+  G+LY L + +  +   S F A +  LWH+RLGHPSS+ +  L+    +   T 
Sbjct: 459 ILRCNSRGDLYTLPIAAPAIAAHS-FLAQSSTLWHRRLGHPSSAAIQTLHKLAILPC-TK 516

Query: 137 SDKHLCQSCVFGKHVKLPFSDSGSVTCLPFDIIHSDLWTSPVLSS 3
            D  LC +C  GKH +LPFS S S T  PF+++H D+WTSPVLS+
Sbjct: 517 IDHSLCHACKLGKHTRLPFSRSQSSTSSPFELVHCDVWTSPVLST 561


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
 Frame = -1

Query: 317 ILRCDRTGELYPLSLPSAQVTPPSTFTALTQD--LWHKRLGHPSSSLL*VLNNRHFISVK 144
           +LRCD +G LY ++ PS+  +      A T D  +WH+RLGHPSS+LL  L +   ISV 
Sbjct: 463 LLRCDSSGPLYSVT-PSSYPSSHHALAATTSDSFIWHRRLGHPSSTLLSHLLSSLSISVP 521

Query: 143 TFSDKHLCQSCVFGKHVKLPFSDSGSVTCLPFDIIHSDLWTSPVLS 6
                 LCQ+C  GKH +LPF +S ++    F+I+HSD+WTSPV S
Sbjct: 522 KTDLTSLCQACQLGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPS 567


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 48/104 (46%), Positives = 63/104 (60%)
 Frame = -1

Query: 317 ILRCDRTGELYPLSLPSAQVTPPSTFTALTQDLWHKRLGHPSSSLL*VLNNRHFISVKTF 138
           ILRC+  G+LY L      +T  S F A +  LWH RLGHPS + +  L+    +S  T 
Sbjct: 458 ILRCNSRGDLYTLPTTVPAITAHS-FLAKSSTLWHHRLGHPSPAAVQTLHKLAILSC-TR 515

Query: 137 SDKHLCQSCVFGKHVKLPFSDSGSVTCLPFDIIHSDLWTSPVLS 6
           S+  LC +C  GKH +L FS S S T  PF+++H D+WTSPVLS
Sbjct: 516 SNNKLCHACHLGKHTRLSFSKSSSSTSSPFELVHCDVWTSPVLS 559


>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
          Length = 1803

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 LRCDRTGELYPLSLPSAQVTPPSTFTALTQDLWHKRLGHP-SSSLL*VLNNRHFISVKTF 138
           LRCD  G+LYPL LPS      S  ++ + + WH RLGHP S+SL  VL +  F   K  
Sbjct: 470 LRCDSPGDLYPLRLPSPHAL--SATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNK-- 525

Query: 137 SDKHLCQSCVFGKHVKLPFSDSGSVTCLPFDIIHSDLWTSPVLSS 3
           S  H C +C  G +V+LPF  S S T  PF ++H+D+WTSP+ S+
Sbjct: 526 SAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSN 570


>gb|ABB47941.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1414

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 LRCDRTGELYPLSLPSAQVTPPSTFTALTQDLWHKRLGHP-SSSLL*VLNNRHFISVKTF 138
           LRCD  G+LYPL LPS      S  ++ + + WH RLGHP S+SL  VL +  F   K  
Sbjct: 470 LRCDSPGDLYPLRLPSPHAL--SATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNK-- 525

Query: 137 SDKHLCQSCVFGKHVKLPFSDSGSVTCLPFDIIHSDLWTSPVLSS 3
           S  H C +C  G +V+LPF  S S T  PF ++H+D+WTSP+ S+
Sbjct: 526 SAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSN 570