BLASTX nr result

ID: Atractylodes22_contig00055867 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00055867
         (222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containi...    69   4e-10
ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containi...    62   6e-08
ref|XP_002525211.1| pentatricopeptide repeat-containing protein,...    57   2e-06

>ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = +2

Query: 5   GTSWIETPGGMRSFMAKDVSNEKTEEIYVTLGGLFNLMREERYAVSEGCNEE 160
           GTSWIET GG+RSF+A+DVS+E++EEIY  L GL  LMREE Y + +  +EE
Sbjct: 612 GTSWIETSGGLRSFIARDVSSERSEEIYGMLEGLLGLMREEGYTLQDELDEE 663


>ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/54 (53%), Positives = 39/54 (72%)
 Frame = +2

Query: 5   GTSWIETPGGMRSFMAKDVSNEKTEEIYVTLGGLFNLMREERYAVSEGCNEESI 166
           G+SWIET GG+ SF+AKDVSN +++EIY  L GL  LMREE   + E  + E++
Sbjct: 612 GSSWIETSGGLLSFIAKDVSNGRSDEIYALLEGLLGLMREEGCVLQEELDYENV 665


>ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535508|gb|EEF37177.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/54 (51%), Positives = 36/54 (66%)
 Frame = +2

Query: 5   GTSWIETPGGMRSFMAKDVSNEKTEEIYVTLGGLFNLMREERYAVSEGCNEESI 166
           G+SWIET  G+RSF+A D   E  EEI+V L GL  LMR+E   + +  +EESI
Sbjct: 599 GSSWIETSEGLRSFIATDTCTENVEEIHVILKGLLGLMRDEGKVLQDMLDEESI 652


Top