BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00055678
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia...   206   2e-51
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   204   5e-51
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   204   5e-51
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...   204   5e-51
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...   204   8e-51

>gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score =  206 bits (523), Expect = 2e-51
 Identities = 96/109 (88%), Positives = 106/109 (97%)
 Frame = -3

Query: 342  PVQILTRQPAEGRSRYGGLRFGEIERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI 163
            PVQILTRQPAEGRSR GGLRFGE+ERDCMIAHGAAHFLKERLFDQSDAYRIHVC+ CGLI
Sbjct: 1084 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCQQCGLI 1143

Query: 162  ALTNLKKVSFECRSCKNKTEVVQIHLPYACKLLIQELMSMAIAPRLLTK 16
            A+ NLKK+SFECRSCKNKT++VQ+++PYACKLLIQELMSMAIAPR+LTK
Sbjct: 1144 AIANLKKISFECRSCKNKTDIVQVYIPYACKLLIQELMSMAIAPRMLTK 1192


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  204 bits (520), Expect = 5e-51
 Identities = 98/115 (85%), Positives = 107/115 (93%), Gaps = 1/115 (0%)
 Frame = -3

Query: 342  PVQILTRQPAEGRSRYGGLRFGEIERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI 163
            PVQILTRQPAEGRSR GGLRFGE+ERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLI
Sbjct: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLI 1132

Query: 162  ALTNLKKVSFECRSCKNKTEVVQIHLPYACKLLIQELMSMAIAPRLLTK-VKSTK 1
            A+ NLKK SFECR CKNKT++VQ+H+PYACKLL QELM+MAIAPR+LTK VK TK
Sbjct: 1133 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPTK 1187


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  204 bits (520), Expect = 5e-51
 Identities = 99/115 (86%), Positives = 106/115 (92%), Gaps = 1/115 (0%)
 Frame = -3

Query: 342  PVQILTRQPAEGRSRYGGLRFGEIERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI 163
            PVQILTRQPAEGRSR GGLRFGE+ERDCMIAHGAAHFLKERLFDQSDAYRIHVCE CGLI
Sbjct: 1070 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLI 1129

Query: 162  ALTNLKKVSFECRSCKNKTEVVQIHLPYACKLLIQELMSMAIAPRLLTK-VKSTK 1
            A+ NLKK SFECR CKNKT++VQ+H+PYACKLL QELMSMAIAPR+LTK VK  K
Sbjct: 1130 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQAK 1184


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  204 bits (520), Expect = 5e-51
 Identities = 98/115 (85%), Positives = 107/115 (93%), Gaps = 1/115 (0%)
 Frame = -3

Query: 342  PVQILTRQPAEGRSRYGGLRFGEIERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI 163
            PVQILTRQPAEGRSR GGLRFGE+ERDCMIAHGAAHFLKERLFDQSDAYRIHVCE CGLI
Sbjct: 1079 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLI 1138

Query: 162  ALTNLKKVSFECRSCKNKTEVVQIHLPYACKLLIQELMSMAIAPRLLTK-VKSTK 1
            A+ NLKK SFECR CKNKT++VQ+H+PYACKLL QELMSMAIAPR+LTK +K +K
Sbjct: 1139 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDIKQSK 1193


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  204 bits (518), Expect = 8e-51
 Identities = 94/109 (86%), Positives = 103/109 (94%)
 Frame = -3

Query: 342  PVQILTRQPAEGRSRYGGLRFGEIERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI 163
            PVQILTRQPAEGRSR GGLRFGE+ERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI
Sbjct: 1078 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLI 1137

Query: 162  ALTNLKKVSFECRSCKNKTEVVQIHLPYACKLLIQELMSMAIAPRLLTK 16
            A+ NLKK SFECR CKNKT++VQ+++PYACKLL QELM+MAIAPR+ TK
Sbjct: 1138 AIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTK 1186