BLASTX nr result

ID: Atractylodes22_contig00053915 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00053915
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    59   3e-07
ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containi...    59   3e-07
emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]    59   3e-07
ref|XP_003603234.1| Pentatricopeptide repeat-containing protein ...    59   4e-07
ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containi...    58   7e-07

>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/82 (41%), Positives = 43/82 (52%)
 Frame = +3

Query: 24  HLFFPITFFRSRFSDVTPRNCYXXXXXXXXXPWFPLISTAIARKDLLFGKSIHAVVIKHG 203
           HL  P    R+ F+      C           WF L+ +AIA  DL  GK  HA ++  G
Sbjct: 582 HLKVPSISSRTSFACPFLLFCRFSSLSSSSSQWFSLLRSAIAMADLKLGKRAHARIVTSG 641

Query: 204 YTTADRFLTNNLVSMYSKCGSL 269
               DR+LTNNL++MYSKCGSL
Sbjct: 642 -DLPDRYLTNNLITMYSKCGSL 662


>ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/82 (41%), Positives = 43/82 (52%)
 Frame = +3

Query: 24  HLFFPITFFRSRFSDVTPRNCYXXXXXXXXXPWFPLISTAIARKDLLFGKSIHAVVIKHG 203
           HL  P    R+ F+      C           WF L+ +AIA  DL  GK  HA ++  G
Sbjct: 582 HLKVPSISSRTSFACPFLLFCRFSSLSSSSSQWFSLLRSAIAMADLKLGKRAHARIVTSG 641

Query: 204 YTTADRFLTNNLVSMYSKCGSL 269
               DR+LTNNL++MYSKCGSL
Sbjct: 642 -DLPDRYLTNNLITMYSKCGSL 662


>emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
          Length = 2076

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/50 (56%), Positives = 36/50 (72%)
 Frame = +3

Query: 120 WFPLISTAIARKDLLFGKSIHAVVIKHGYTTADRFLTNNLVSMYSKCGSL 269
           WF L+ TAI+  +LL GK  HA ++  G T  D FLTNNL+++YSKCGSL
Sbjct: 87  WFSLLRTAISTHNLLLGKCTHARIVVSG-TAGDHFLTNNLLTLYSKCGSL 135


>ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355492282|gb|AES73485.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 973

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +3

Query: 120 WFPLISTAIARKDLLFGKSIHAVVIKHGYTTADRFLTNNLVSMYSKCGSL 269
           WF ++  AIA  DL+ GK  HAV++  G    DR++TNNL++MY+KCGSL
Sbjct: 16  WFSILRHAIADSDLILGKRTHAVIVTSGLNP-DRYVTNNLITMYAKCGSL 64


>ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 1582

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +3

Query: 120 WFPLISTAIARKDLLFGKSIHAVVIKHGYTTADRFLTNNLVSMYSKCGSL 269
           WF ++  AIA  DL  GK  HA ++  G+   DRFLTNNL++MYSKCGSL
Sbjct: 629 WFSILRHAIAASDLPLGKRAHARILTSGHHP-DRFLTNNLITMYSKCGSL 677


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