BLASTX nr result

ID: Atractylodes22_contig00053701 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00053701
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAH03515.1| centromere specific histone H3 variant [Nicotian...    79   5e-13
gb|ADB03183.1| centromeric histone H3 [Hordeum marinum subsp. ma...    78   6e-13
ref|XP_002281073.1| PREDICTED: histone H3-like centromeric prote...    78   8e-13
dbj|BAH03514.1| centromere specific histone H3 variant [Nicotian...    78   8e-13
gb|AEH95351.1| centromeric histone 3 [Triticum aestivum]               77   1e-12

>dbj|BAH03515.1| centromere specific histone H3 variant [Nicotiana tabacum]
           gi|218744596|dbj|BAH03516.1| centromere specific histone
           H3 variant [Nicotiana sylvestris]
          Length = 157

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 37/51 (72%), Positives = 44/51 (86%)
 Frame = -2

Query: 200 RQRRHRFKPGTQALREIRRLQKTVNLLIPAAPFIRTVKEISNYIAPEVTRW 48
           ++++ R++PGT ALREIRR QKT NLLIPAAPFIR VKEIS + APEVTRW
Sbjct: 54  QKKKTRYRPGTVALREIRRFQKTWNLLIPAAPFIRLVKEISYFFAPEVTRW 104


>gb|ADB03183.1| centromeric histone H3 [Hordeum marinum subsp. marinum]
          Length = 139

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 33/58 (56%), Positives = 47/58 (81%)
 Frame = -2

Query: 221 GSSGAGERQRRHRFKPGTQALREIRRLQKTVNLLIPAAPFIRTVKEISNYIAPEVTRW 48
           G+ G  ++++ HRF+PGT ALREIR+ QK+V  LIP APF+R +KEI+++I PE+TRW
Sbjct: 48  GAPGQPKQRKPHRFRPGTVALREIRKYQKSVEFLIPFAPFVRLIKEITDFICPEITRW 105


>ref|XP_002281073.1| PREDICTED: histone H3-like centromeric protein HTR12 [Vitis
           vinifera] gi|297745416|emb|CBI40496.3| unnamed protein
           product [Vitis vinifera]
          Length = 156

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
 Frame = -2

Query: 326 MARTKLPAKRSTGKRKHXXXXXXXXXXXXXXRKVP----------GSSGAGERQRRHRFK 177
           M RTK  A++S  +R+                  P            +G+  +++  R++
Sbjct: 1   MTRTKHLARKSRNRRRQFAATPASPASAGPSSAPPRRPTRTATDASPTGSQGQRKPFRYR 60

Query: 176 PGTQALREIRRLQKTVNLLIPAAPFIRTVKEISNYIAPEVTRW 48
           PGT ALREIRR QKT +LLIPAAPFIRTV+EIS + APE++RW
Sbjct: 61  PGTVALREIRRFQKTTHLLIPAAPFIRTVREISYFFAPEISRW 103


>dbj|BAH03514.1| centromere specific histone H3 variant [Nicotiana tabacum]
           gi|218744598|dbj|BAH03517.1| centromere specific histone
           H3 variant [Nicotiana tomentosiformis]
          Length = 156

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 36/51 (70%), Positives = 45/51 (88%)
 Frame = -2

Query: 200 RQRRHRFKPGTQALREIRRLQKTVNLLIPAAPFIRTVKEISNYIAPEVTRW 48
           ++++ R++PGT ALREIRR QKT +LLIPAAPFIR VKEIS++ APEVTRW
Sbjct: 53  QKKKTRYRPGTVALREIRRFQKTWDLLIPAAPFIRLVKEISHFFAPEVTRW 103


>gb|AEH95351.1| centromeric histone 3 [Triticum aestivum]
          Length = 163

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 31/58 (53%), Positives = 48/58 (82%)
 Frame = -2

Query: 221 GSSGAGERQRRHRFKPGTQALREIRRLQKTVNLLIPAAPFIRTVKEISNYIAPEVTRW 48
           G++G  ++++ HRF+PGT ALREIRR QK+V+ LIP APF+R +KE++++  PE++RW
Sbjct: 54  GATGQPKQRKPHRFRPGTVALREIRRYQKSVDFLIPFAPFVRLIKEVTDFFCPEISRW 111


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