BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00050460
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        133   1e-29
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   123   2e-26
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   119   3e-25
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...   117   1e-24
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   116   2e-24

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  133 bits (335), Expect = 1e-29
 Identities = 64/118 (54%), Positives = 85/118 (72%)
 Frame = -3

Query: 355  PDRYGFAPFDSSSYVDLIAYSLVMATEVIEDEPKNFSEAMSCDRKDKWLSAMKDEIKSLE 176
            P RYG+A        DLIAY+L+ A EV  +EP NFSEAM     DKWL AM+DE++SL+
Sbjct: 790  PVRYGYA--------DLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQ 841

Query: 175  YNHTWELVEKPADSRIISCRWIFRKKEGIPGVKSIRYKARLVARGFSQIEGIDFIDVF 2
             N TW L+  P + R+I+C+WIF++ EGIP V+  +YKARLVARGF+Q EG+DF ++F
Sbjct: 842  RNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIF 899


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  123 bits (308), Expect = 2e-26
 Identities = 53/103 (51%), Positives = 79/103 (76%)
 Frame = -3

Query: 310  DLIAYSLVMATEVIEDEPKNFSEAMSCDRKDKWLSAMKDEIKSLEYNHTWELVEKPADSR 131
            D +AY+L  A ++ E+EPK++ EA+   ++ +W +AMK+E+ S + +HTW+L+EKP   +
Sbjct: 716  DFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQK 775

Query: 130  IISCRWIFRKKEGIPGVKSIRYKARLVARGFSQIEGIDFIDVF 2
            +I C+WIF+ K GIPGV+  RYKARLVA+GFSQ EGID+ +VF
Sbjct: 776  LIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYNEVF 818


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  119 bits (297), Expect = 3e-25
 Identities = 52/118 (44%), Positives = 80/118 (67%)
 Frame = -3

Query: 355  PDRYGFAPFDSSSYVDLIAYSLVMATEVIEDEPKNFSEAMSCDRKDKWLSAMKDEIKSLE 176
            P R G  P     + D++ Y+L +A EV   EP  + EA+     +KW +AM DE++SL 
Sbjct: 759  PRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLH 818

Query: 175  YNHTWELVEKPADSRIISCRWIFRKKEGIPGVKSIRYKARLVARGFSQIEGIDFIDVF 2
             N TW+LV +P+  +II+C+W+F+KKEGI   + ++YKAR+VARGF+Q EG+D+ ++F
Sbjct: 819  KNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIF 876


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score =  117 bits (293), Expect = 1e-24
 Identities = 51/103 (49%), Positives = 76/103 (73%)
 Frame = -3

Query: 310 DLIAYSLVMATEVIEDEPKNFSEAMSCDRKDKWLSAMKDEIKSLEYNHTWELVEKPADSR 131
           D +AY+L    ++  +EPK++ EAM   ++ +W SAMK+E+ S + +HTW+L+EKP   +
Sbjct: 188 DFVAYALATEEDLEIEEPKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQK 247

Query: 130 IISCRWIFRKKEGIPGVKSIRYKARLVARGFSQIEGIDFIDVF 2
           +I C+WIF+ K GIPG++  RYK RLVA+GFSQ EGID+ +VF
Sbjct: 248 LIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQEGIDYNEVF 290


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  116 bits (290), Expect = 2e-24
 Identities = 54/104 (51%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
 Frame = -3

Query: 310  DLIAYSLVMATEVIED-EPKNFSEAMSCDRKDKWLSAMKDEIKSLEYNHTWELVEKPADS 134
            +++AY+L +A E+  + EP  +SEA+  D  ++W++AM DE++SLE NHTWELV+ P + 
Sbjct: 1005 NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 1064

Query: 133  RIISCRWIFRKKEGIPGVKSIRYKARLVARGFSQIEGIDFIDVF 2
            + I C+WIF++KEGI      RYKARL+A+G+SQI GIDF DVF
Sbjct: 1065 KPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVF 1108