BLASTX nr result

ID: Atractylodes22_contig00050426 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00050426
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13160.1| putative non-LTR retroelement [Phaseolus vulgaris]      67   3e-09
ref|XP_002308172.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_003592888.1| hypothetical protein MTR_2g005390 [Medicago ...    59   4e-07
ref|XP_003611665.1| hypothetical protein MTR_5g016490 [Medicago ...    59   6e-07
ref|XP_003622062.1| AP-3 complex subunit mu-2 [Medicago truncatu...    59   7e-07

>gb|AER13160.1| putative non-LTR retroelement [Phaseolus vulgaris]
          Length = 216

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
 Frame = -1

Query: 572 LYERGIDIDTRLCSRCGVEVECLTHCFIQCRDSQQIWRSVFQWWGRCFQSNYSLNDILLE 393
           L  RGI +++  C  C ++ E   H FI+C  ++Q+W    +W G  F  +  L D  + 
Sbjct: 55  LSRRGIQLNSIACVLCQIKEESCQHLFIECLYAKQVWSLCLKWLGILFVQHNDLKDHFVS 114

Query: 392 AN----SFGSNSELKQLWLATMFIVFYIIWNSRNSTLFGRAEVTSKHDLVFEIQLASYYW 225
            +    S   N  LK +W A    +   IW+ RN+ LF +  V    ++    QL S+ W
Sbjct: 115 FHIAQASSKQNLVLKGVWAA----IVRCIWDQRNTILF-KQGVVDVEEIFQMAQLKSWLW 169

Query: 224 ISSRYRKFIYSWGDWL 177
           +  R     YS+ DWL
Sbjct: 170 MKHRAYFHTYSFVDWL 185


>ref|XP_002308172.1| predicted protein [Populus trichocarpa] gi|222854148|gb|EEE91695.1|
           predicted protein [Populus trichocarpa]
          Length = 670

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
 Frame = -1

Query: 572 LYERGI-DIDTRLCSRCGVEVECLTHCFIQCRDSQQIWRSVFQWWGRCFQSNYSLNDILL 396
           L  RGI DI    C  C  E E + H  + C     +W  +  WWG  +    +L  +  
Sbjct: 372 LVRRGILDISAAACPICLAEEESVDHILLHCHKHWIVWSKIINWWGLAWCCPKNLAALFS 431

Query: 395 EANSFGSNSELKQLWLATMFIVFYIIWNSRNSTLFGRAEVTSKHDLVFEIQLASY-YWIS 219
           + +S       K+ WL  +F V + +W  RN  +F ++  T  +D +F + +    +WI 
Sbjct: 432 QWDSLVYGKFQKKAWLMLLFSVAWSLWLHRNDVIFKQS--TPNYDTLFILIITRLCFWIK 489

Query: 218 SRYRKFIYSWGDWLTGS----LWKQRSNPNALFV 129
           +    F YS  D L  +     W    N   + V
Sbjct: 490 AIEPDFSYSASDLLRSAEGLLRWTNSKNQRVVVV 523


>ref|XP_003592888.1| hypothetical protein MTR_2g005390 [Medicago truncatula]
           gi|355481936|gb|AES63139.1| hypothetical protein
           MTR_2g005390 [Medicago truncatula]
          Length = 128

 Score = 59.3 bits (142), Expect = 4e-07
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
 Frame = -1

Query: 512 ECLTHCFIQCRDSQQIWRSVFQWWGRCFQSNYSLNDILLEANSFGSNSELKQLWLATMFI 333
           E  +H FI C     +W  +  W G      +++ND  ++     S+S+ +Q +L  +++
Sbjct: 3   ETTSHLFIHCTTFGSLWHLIRSWIGMSGADPFTINDHFIQFTHSTSHSKARQSFLQLIWL 62

Query: 332 V-FYIIWNSRNSTLFGRAEVTSKHDLVFEIQLASYYWISSRYRKFIYSWGDWLTGSLW 162
           +  +++WN RN+ LF   + T+  +L  +++  S +W+ +    F+Y    W +  L+
Sbjct: 63  LCVWVVWNERNNRLFNNIQ-TTVDNLADKVRFHSLWWLQANNANFMYGTQRWWSDPLF 119


>ref|XP_003611665.1| hypothetical protein MTR_5g016490 [Medicago truncatula]
           gi|355513000|gb|AES94623.1| hypothetical protein
           MTR_5g016490 [Medicago truncatula]
          Length = 215

 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
 Frame = -1

Query: 542 RLCSRCGVEVECLTHCFIQCRDSQQIWRSVFQWWGRCFQSNYSLNDILLEANSFGSNSEL 363
           R  S CG + E   H F+ C     +W+ +  W G       ++++  L+  ++ S S+ 
Sbjct: 85  RCVSGCGTD-ESAPHLFLHCNVFGSLWQHIRSWIGVSGVDPLNISEHFLQFINYTSYSKK 143

Query: 362 KQLWLATMFIV-FYIIWNSRNSTLFGRAEVTSKHDLVFEIQLASYYWISSRYRKFIYSWG 186
           ++ +L  ++++  ++IWN RN+ LF   E TS   L+ +++  SY+W+ +    F+Y   
Sbjct: 144 RRSFLQLIWLLGVWLIWNERNNRLFNDIE-TSDLQLLEKVKFHSYWWLKANNATFVYDSQ 202

Query: 185 DWLTGSL 165
            W +  L
Sbjct: 203 RWWSDPL 209


>ref|XP_003622062.1| AP-3 complex subunit mu-2 [Medicago truncatula]
           gi|355497077|gb|AES78280.1| AP-3 complex subunit mu-2
           [Medicago truncatula]
          Length = 426

 Score = 58.5 bits (140), Expect = 7e-07
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
 Frame = -1

Query: 572 LYERGI-DIDTRLC-SRCGVEVECLTHCFIQCRDSQQIWRSVFQWWGRCFQSNYSLNDIL 399
           L+ RGI   + + C + CG   E   H F+ C      W  V QW G      ++L D  
Sbjct: 284 LFRRGIIQFEAQSCVNGCGSS-EISDHLFLLCNHFDMAWYLVRQWLGIYTTDPFTLVDHF 342

Query: 398 LEANSFGSNSELK-----QLWLATMFIVFYIIWNSRNSTLFGRAEVTSKHDLVFEIQLAS 234
           ++  S    S+++      +W AT     +++W  RN +LF R + +S   L+  I+L S
Sbjct: 343 IQFGSSAGYSKVRCSFIHLIWFATS----WVMWKERNESLF-RIKQSSFPQLLENIRLLS 397

Query: 233 YYWISSRYRKFIYSWGDWLTGS 168
           +YW  ++   F Y + DW   S
Sbjct: 398 FYWHKAKCASFNYKFYDWCQNS 419


Top